RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4595
         (286 letters)



>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase
           IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]}
          Length = 383

 Score =  110 bits (276), Expect = 1e-28
 Identities = 71/146 (48%), Positives = 82/146 (56%), Gaps = 56/146 (38%)

Query: 141 KLFRANEPLLSVFMWGVNHTINELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKSHVRGIL 200
           KLFRA+EP+LSV MWGVNHTINELS+V +PVML+PDDF+AYSK+KVDNHLFNK +     
Sbjct: 1   KLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKEN----- 55

Query: 201 LPKELAQMSSDQCYYRINELSHVTIPVMLLPDDFRAYSKLKVDNHLFNKENMPSHFKIKE 260
                                        LP  F                      K KE
Sbjct: 56  -----------------------------LPSRF----------------------KFKE 64

Query: 261 YCPLVFRNLRERFGIDDLDYKESMTR 286
           YCP+VFRNLRERFGIDD DY+ S+TR
Sbjct: 65  YCPMVFRNLRERFGIDDQDYQNSVTR 90



 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 19/25 (76%), Positives = 22/25 (88%)

Query: 26 KLFRANEPLLSVFMWGVNHTVNASS 50
          KLFRA+EP+LSV MWGVNHT+N  S
Sbjct: 1  KLFRASEPILSVLMWGVNHTINELS 25


>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 202

 Score = 25.6 bits (56), Expect = 7.3
 Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 11/107 (10%)

Query: 132 HFRVKHQKVKLFRANEPLLSVFMWGVNHTINELS--HVTIPVMLLPDDFRAYSKLK-VDN 188
                   V      + L  V    + H I+  S  +      +  + F     L+ +  
Sbjct: 77  PLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVE 136

Query: 189 HLFNKSHVRGILLPKELAQ-------MSSDQCYYRIN-ELSHVTIPV 227
                   R      E+         +S ++ +++++    H T  V
Sbjct: 137 TTGMTCQARTSYTEDEVLWGHRFFPVISLEEGFFKVDYSQFHATFEV 183


>d1l5xa_ c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) {Archaeon
           Pyrobaculum aerophilum [TaxId: 13773]}
          Length = 276

 Score = 25.5 bits (55), Expect = 8.1
 Identities = 10/34 (29%), Positives = 13/34 (38%)

Query: 41  GVNHTVNASSLSLYSSGQANSADSALRRQTGAKC 74
           G+N   N S   + SSG   +A  A      A  
Sbjct: 91  GINLGDNTSLQVILSSGTLGAAFQAALLGIPALA 124


>d2j0161 g.41.8.6 (6:9-53) Ribosomal protein L33p {Thermus
           thermophilus [TaxId: 274]}
          Length = 45

 Score = 23.0 bits (50), Expect = 9.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 248 NKENMPSHFKIKEYCP 263
           NK N P+  ++++YCP
Sbjct: 18  NKRNTPNKLELRKYCP 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0742    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,027,184
Number of extensions: 44649
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 8
Length of query: 286
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,254,276
Effective search space: 253363752
Effective search space used: 253363752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.8 bits)