BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4596
(439 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 103/180 (57%), Gaps = 11/180 (6%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGFSI GGTD+ P P IFI+ I+PGG AA G+LR+ D IL VN DV +VTH
Sbjct: 72 LGFSIAGGTDN---PHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 128
Query: 231 EAVLALLEPCPEILLKI-QHDPHPEGFQEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKN 288
AV AL E + L + + P E EI LI+ G K LG I GG+ GN
Sbjct: 129 AAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIK--GPKGLGFSIAGGV----GNQHIPG 182
Query: 289 DEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
D +++TKI GGAA +DGRL++G ++L VN + L H++AV L+ + + L V K
Sbjct: 183 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 242
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 92/211 (43%), Gaps = 17/211 (8%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGF+I+GG D GIFIS I+ GG A LSG+LR GD+IL+VNG D+ +HE
Sbjct: 320 LGFNIVGGEDGE---------GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE 370
Query: 231 EAVLALLEPCPEILLKIQHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDE 290
+A +AL + + Q+ P E + + + + G R NP
Sbjct: 371 QAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLGSGTASLRSNP----KR 426
Query: 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGF 350
G +I + K G L + + + ++ A +E R H S T GF
Sbjct: 427 GFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRV--HSDSETDDIGF 484
Query: 351 --ERGDIERRASTSEGSRSVTQSMSSLDRED 379
+ +ERR + ++ S S RED
Sbjct: 485 IPSKRRVERREWSRLKAKDWGSSSGSQGRED 515
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISL 62
G ++L VNG+ L ASH++A L+ +G +++
Sbjct: 353 GDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 385
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 111/197 (56%), Gaps = 12/197 (6%)
Query: 155 SSSLFLQDVVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMG 213
S S+ +++ L + LGFSI GGTD+ P P IFI+ I+PGG AA G+LR+
Sbjct: 1 SGSMEYEEITLERGNSGLGFSIAGGTDN---PHIGDDPSIFITKIIPGGAAAQDGRLRVN 57
Query: 214 DRILAVNGRDVSKVTHEEAVLALLEPCPEILLKI-QHDPHPEGFQEITLIRQEGEK-LGM 271
D IL VN DV +VTH AV AL E + L + + P E EI LI+ G K LG
Sbjct: 58 DSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIK--GPKGLGF 115
Query: 272 HIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEA 331
I GG+ GN D +++TKI GGAA +DGRL++G ++L VN + L H++A
Sbjct: 116 SIAGGV----GNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 171
Query: 332 VNTLRYSGHQISLTVCK 348
V L+ + + L V K
Sbjct: 172 VAALKNTYDVVYLKVAK 188
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 11/91 (12%)
Query: 169 GP--LGFSIIGGTDHSCIPFGQHKPG---IFISHIVPGGVAALSGKLRMGDRILAVNGRD 223
GP LGFSI GG + QH PG I+++ I+ GG A G+L++GD+ILAVN
Sbjct: 109 GPKGLGFSIAGGVGN------QHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG 162
Query: 224 VSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
+ V HE+AV AL + LK+ + E
Sbjct: 163 LEDVMHEDAVAALKNTYDVVYLKVAKPSNAE 193
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 103/180 (57%), Gaps = 11/180 (6%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGFSI GGTD+ P P IFI+ I+PGG AA G+LR+ D IL VN DV +VTH
Sbjct: 15 LGFSIAGGTDN---PHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 71
Query: 231 EAVLALLEPCPEILLKI-QHDPHPEGFQEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKN 288
AV AL E + L + + P E EI LI+ G K LG I GG+ GN
Sbjct: 72 AAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIK--GPKGLGFSIAGGV----GNQHIPG 125
Query: 289 DEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
D +++TKI GGAA +DGRL++G ++L VN + L H++AV L+ + + L V K
Sbjct: 126 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 185
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 103/180 (57%), Gaps = 11/180 (6%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGFSI GGTD+ P P IFI+ I+PGG AA G+LR+ D IL VN DV +VTH
Sbjct: 25 LGFSIAGGTDN---PHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 81
Query: 231 EAVLALLEPCPEILLKI-QHDPHPEGFQEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKN 288
AV AL E + L + + P E EI LI+ G K LG I GG+ GN
Sbjct: 82 AAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIK--GPKGLGFSIAGGV----GNQHIPG 135
Query: 289 DEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
D +++TKI GGAA +DGRL++G ++L VN + L H++AV L+ + + L V K
Sbjct: 136 DNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 195
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 70/98 (71%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
+E+ + + GE+LG+ I+GG RG GNP D DEG+FI+K++ GAA RDGRL+VG+RL
Sbjct: 10 LRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRL 69
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERG 353
LEVN SLLG +H EAV LR G +++ VC GFE G
Sbjct: 70 LEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFESG 107
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 30/43 (69%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERG 71
VG+RLLEVN SLLG +H EAV LR G +++ VC GFE G
Sbjct: 65 VGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFESG 107
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 171 LGFSIIGGT-DHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTH 229
LG SI GG H+ P GIFIS + P G A G+LR+G R+L VN + + +TH
Sbjct: 23 LGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTH 82
Query: 230 EEAVLAL 236
EAV L
Sbjct: 83 GEAVQLL 89
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 96/185 (51%), Gaps = 23/185 (12%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG ++ GG D P +S++ GG+AA S +L +GD I AVNG +++K H+
Sbjct: 21 LGLTVSGGIDKDGKPR--------VSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHD 72
Query: 231 EAVLALLEPCPEILLKIQHDPHPEGFQ---------EITLIRQEGEKLGMHIKGGLRGQR 281
E + L ++L+++++ P Q E+TL +EG G I+GG R
Sbjct: 73 EIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTL-HKEGNTFGFVIRGGAHDDR 131
Query: 282 GNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ 341
V IT + GG A R+G +K G RLL V+G+ LLG +H EA++ L+ G +
Sbjct: 132 -----NKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE 186
Query: 342 ISLTV 346
+L +
Sbjct: 187 ATLLI 191
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 144 VTYNFFSPSVRSSSLFLQ--DVVLPKSG-PLGFSIIGGTDHSCIPFGQHKPGIFISHIVP 200
V Y S++ SS+ + +V L K G GF I GG + +P + I+ + P
Sbjct: 89 VEYELPPVSIQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHDD---RNKSRP-VVITCVRP 144
Query: 201 GGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHD 250
GG A G ++ GDR+L+V+G + TH EA+ L + E L I++D
Sbjct: 145 GGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYD 194
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 254 EGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGM 313
+G + L+++EG LG+ + GG+ + G P ++ + GG A R +L VG
Sbjct: 6 KGSTVVELMKKEGTTLGLTVSGGID-KDGKPR--------VSNLRQGGIAARSDQLDVGD 56
Query: 314 RLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
+ VNG++L H E ++ L+ G ++ L V
Sbjct: 57 YIKAVNGINLAKFRHDEIISLLKNVGERVVLEV 89
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 23 EVVIHPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
E I P G RLL V+G+ LLG +H EA++ L+ G + +L +
Sbjct: 151 EGTIKP-GDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLI 191
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 152 SVRSSSLFLQDVVLPKSGP--LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGK 209
S+R L ++ + GP LGF+I+GGTD + + GI++S I G AAL G+
Sbjct: 1 SMRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVS---NDSGIYVSRIKENGAAALDGR 57
Query: 210 LRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQH 249
L+ GD+IL+VNG+D+ + H++AV + L++QH
Sbjct: 58 LQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQH 97
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+EI L R LG +I GG Q ND G+++++I GAA DGRL+ G ++L
Sbjct: 11 EEINLTRGP-SGLGFNIVGGTDQQ----YVSNDSGIYVSRIKENGAAALDGRLQEGDKIL 65
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
VNG L HQ+AV+ R +G+ +SL V
Sbjct: 66 SVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 95
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G ++L VNG L HQ+AV+ R +G+ +SL V
Sbjct: 61 GDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 95
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 169 GP--LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSK 226
GP LGF+I+GGTD + + GI++S I G AAL G+L+ GD+IL+VNG+D+
Sbjct: 16 GPSGLGFNIVGGTDQQYVS---NDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKN 72
Query: 227 VTHEEAVLALLEPCPEILLKIQH 249
+ H++AV + L++QH
Sbjct: 73 LLHQDAVDLFRNAGYAVSLRVQH 95
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+EI L R LG +I GG Q ND G+++++I GAA DGRL+ G ++L
Sbjct: 9 EEINLTRGP-SGLGFNIVGGTDQQ----YVSNDSGIYVSRIKENGAAALDGRLQEGDKIL 63
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFE 351
VNG L HQ+AV+ R +G+ +SL V E
Sbjct: 64 SVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLE 98
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFE 69
G ++L VNG L HQ+AV+ R +G+ +SL V E
Sbjct: 59 GDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLE 98
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGFSI GGTD+ P PGIFI+ I+PGG AA G+LR+ D IL VN DVS+V+H
Sbjct: 22 LGFSIAGGTDN---PHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHS 78
Query: 231 EAVLALLE 238
+AV AL E
Sbjct: 79 KAVEALKE 86
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
F+EITL R LG I GG NP +D G+FITKI GGAA DGRL+V +
Sbjct: 10 FEEITLERGN-SGLGFSIAGGT----DNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCI 64
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
L VN + + SH +AV L+ +G + L V
Sbjct: 65 LRVNEVDVSEVSHSKAVEALKEAGSIVRLYV 95
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 154 RSSSLFLQDVVLPKSGP--LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLR 211
R L ++ + GP LGF+I+GGTD + + GI++S I G AAL G+L+
Sbjct: 11 RVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVS---NDSGIYVSRIKENGAAALDGRLQ 67
Query: 212 MGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQH 249
GD+IL+VNG+D+ + H++AV + L++QH
Sbjct: 68 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQH 105
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+EI L R LG +I GG Q ND G+++++I GAA DGRL+ G ++L
Sbjct: 19 EEINLTRGP-SGLGFNIVGGTDQQ----YVSNDSGIYVSRIKENGAAALDGRLQEGDKIL 73
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
VNG L HQ+AV+ R +G+ +SL V
Sbjct: 74 SVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 103
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G ++L VNG L HQ+AV+ R +G+ +SL V
Sbjct: 69 GDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 103
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGFSI GG D+ +P PGIFI+ I+PGG AA+ G+L + D +L VN DVS+V H
Sbjct: 17 LGFSIAGGIDNPHVP---DDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHS 73
Query: 231 EAVLALLEPCP 241
AV AL E P
Sbjct: 74 RAVEALKEAGP 84
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
++EI L R LG I GG+ NP +D G+FITKI GGAA DGRL V +
Sbjct: 5 YEEIVLERGN-SGLGFSIAGGID----NPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCV 59
Query: 316 LEVNGMSLLGASHQEAVNTLRYSG 339
L VN + + H AV L+ +G
Sbjct: 60 LRVNEVDVSEVVHSRAVEALKEAG 83
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 58/90 (64%), Gaps = 5/90 (5%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
+T++RQ G LG+ I GG + P +DEG+FI++++ G A R G ++VG +LLEV
Sbjct: 19 LTILRQTG-GLGISIAGG---KGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 73
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
NG++L GA H EAV LR +G + + V +
Sbjct: 74 NGVALQGAEHHEAVEALRGAGTAVQMRVWR 103
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
+L ++G LG SI GG P+ GIFIS + G AA +G +R+GD++L VNG
Sbjct: 20 TILRQTGGLGISIAGG--KGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGV 76
Query: 223 DVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
+ H EAV AL + +++ + P
Sbjct: 77 ALQGAEHHEAVEALRGAGTAVQMRVWRESGP 107
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
VG +LLEVNG++L GA H EAV LR +G + + V +
Sbjct: 66 VGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWR 103
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 58/90 (64%), Gaps = 5/90 (5%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
+T++RQ G LG+ I GG + P +DEG+FI++++ G A R G ++VG +LLEV
Sbjct: 7 LTILRQTG-GLGISIAGG---KGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 61
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
NG++L GA H EAV LR +G + + V +
Sbjct: 62 NGVALQGAEHHEAVEALRGAGTAVQMRVWR 91
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 164 VLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRD 223
+L ++G LG SI GG P+ GIFIS + G AA +G +R+GD++L VNG
Sbjct: 9 ILRQTGGLGISIAGG--KGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVA 65
Query: 224 VSKVTHEEAVLALLEPCPEILLKIQHD 250
+ H EAV AL + +++ +
Sbjct: 66 LQGAEHHEAVEALRGAGTAVQMRVWRE 92
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
VG +LLEVNG++L GA H EAV LR +G + + V +
Sbjct: 54 VGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWR 91
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGFSI GGTD+ P P IFI+ I+PGG AA G+LR+ D IL VN DV +VTH
Sbjct: 14 LGFSIAGGTDN---PHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 70
Query: 231 EAVLALLEPCPEILLKIQHDPHP 253
AV AL E + L + P
Sbjct: 71 AAVEALKEAGSIVRLYVMRRKPP 93
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
++EITL R LG I GG NP +D +FITKI GGAA +DGRL+V +
Sbjct: 2 YEEITLERGN-SGLGFSIAGGT----DNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 56
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
L VN + + +H AV L+ +G + L V +
Sbjct: 57 LFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR 89
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGFSI GGTD+ P P IFI+ I+PGG AA G+LR+ D IL VN DV +VTH
Sbjct: 14 LGFSIAGGTDN---PHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 70
Query: 231 EAVLALLEPCPEILLKIQHDPHP 253
AV AL E + L + P
Sbjct: 71 AAVEALKEAGSIVRLYVMRRKPP 93
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
++EITL R LG I GG NP +D +FITKI GGAA +DGRL+V +
Sbjct: 2 YEEITLERGN-SGLGFSIAGGT----DNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 56
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
L VN + + +H AV L+ +G + L V +
Sbjct: 57 LFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR 89
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGFSI GGTD+ P P IFI+ I+PGG AA G+LR+ D IL VN DV +VTH
Sbjct: 15 LGFSIAGGTDN---PHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 71
Query: 231 EAVLALLE 238
AV AL E
Sbjct: 72 AAVEALKE 79
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
++EITL R LG I GG NP +D +FITKI GGAA +DGRL+V +
Sbjct: 3 YEEITLERGN-SGLGFSIAGGT----DNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 57
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
L VN + + +H AV L+ +G + L V +
Sbjct: 58 LFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR 90
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGF+IIGG D GIFIS I+ GG A LSG+LR GD+IL+VNG D+ +HE
Sbjct: 27 LGFNIIGGEDGE---------GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE 77
Query: 231 EAVLALLEPCPEILLKIQHDPH 252
+A +AL + + Q+ P
Sbjct: 78 QAAIALKNAGQTVTIIAQYKPE 99
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 10/76 (13%)
Query: 269 LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH 328
LG +I GG ++ EG+FI+ I +GG A G L+ G ++L VNG+ L ASH
Sbjct: 27 LGFNIIGG----------EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASH 76
Query: 329 QEAVNTLRYSGHQISL 344
++A L+ +G +++
Sbjct: 77 EQAAIALKNAGQTVTI 92
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISL 62
G ++L VNG+ L ASH++A L+ +G +++
Sbjct: 60 GDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 92
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 10/93 (10%)
Query: 161 QDVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
+ ++L K S LGF+I+GG D GIF+S I+ GG A LSG+LR GDRIL+V
Sbjct: 14 RKIILHKGSTGLGFNIVGGEDGE---------GIFVSFILAGGPADLSGELRRGDRILSV 64
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKIQHDPH 252
NG ++ THE+A AL + + Q+ P
Sbjct: 65 NGVNLRNATHEQAAAALKRAGQSVTIVAQYRPE 97
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 269 LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH 328
LG +I GG ++ EG+F++ I +GG A G L+ G R+L VNG++L A+H
Sbjct: 25 LGFNIVGG----------EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATH 74
Query: 329 QEAVNTLRYSGHQISLTV 346
++A L+ +G +++
Sbjct: 75 EQAAAALKRAGQSVTIVA 92
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G R+L VNG++L A+H++A L+ +G +++
Sbjct: 58 GDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVA 92
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 9/82 (10%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGF+I+GG D GIF+S I+ GG A LSG+LR GDRIL+VNG ++ THE
Sbjct: 28 LGFNIVGGEDGE---------GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHE 78
Query: 231 EAVLALLEPCPEILLKIQHDPH 252
+A AL + + Q+ P
Sbjct: 79 QAAAALKRAGQSVTIVAQYRPE 100
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 269 LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH 328
LG +I GG ++ EG+F++ I +GG A G L+ G R+L VNG++L A+H
Sbjct: 28 LGFNIVGG----------EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATH 77
Query: 329 QEAVNTLRYSGHQISLTV 346
++A L+ +G +++
Sbjct: 78 EQAAAALKRAGQSVTIVA 95
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G R+L VNG++L A+H++A L+ +G +++
Sbjct: 61 GDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVA 95
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGF+I+GG D GIFIS I+ GG A LSG+LR GD+IL+VNG D+ +HE
Sbjct: 27 LGFNIVGGEDGE---------GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE 77
Query: 231 EAVLALLEPCPEILLKIQHDPH 252
+A +AL + + Q+ P
Sbjct: 78 QAAIALKNAGQTVTIIAQYKPE 99
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 10/76 (13%)
Query: 269 LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH 328
LG +I GG G EG+FI+ I +GG A G L+ G ++L VNG+ L ASH
Sbjct: 27 LGFNIVGGEDG----------EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASH 76
Query: 329 QEAVNTLRYSGHQISL 344
++A L+ +G +++
Sbjct: 77 EQAAIALKNAGQTVTI 92
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISL 62
G ++L VNG+ L ASH++A L+ +G +++
Sbjct: 60 GDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 92
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 65.1 bits (157), Expect = 7e-11, Method: Composition-based stats.
Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Query: 168 SGPLGFSIIGGTDHSCIPFGQHKPG---IFISHIVPGGVAALSGKLRMGDRILAVNGRDV 224
S LGFSI GG + QH PG I+++ I+ GG A GKL++GD++LAVN +
Sbjct: 12 SKGLGFSIAGGVGN------QHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVAL 65
Query: 225 SKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQEITLIR 263
+VTHEEAV AL + LK+ E EI LI+
Sbjct: 66 EEVTHEEAVTALKNTSDFVYLKVAKPGSGEKIMEIKLIK 104
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 261 LIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNG 320
L+ + + LG I GG+ GN D +++TKI GGAA +DG+L++G +LL VN
Sbjct: 7 LVPRGSKGLGFSIAGGV----GNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNN 62
Query: 321 MSLLGASHQEAVNTLRYSGHQISLTVCK 348
++L +H+EAV L+ + + L V K
Sbjct: 63 VALEEVTHEEAVTALKNTSDFVYLKVAK 90
Score = 28.1 bits (61), Expect = 9.4, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
+G +LL VN ++L +H+EAV L+ + + L V K
Sbjct: 53 IGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAK 90
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 49/80 (61%)
Query: 168 SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKV 227
SG LGF+IIGG G GIF+S IV G AA G L++ DRI+ VNGRD+S+
Sbjct: 18 SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRA 77
Query: 228 THEEAVLALLEPCPEILLKI 247
TH++AV A I++++
Sbjct: 78 THDQAVEAFKTAKEPIVVQV 97
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 261 LIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNG 320
++ ++ LG +I GG R N + EG+F++KI G A ++G L++ R++EVNG
Sbjct: 13 VLHRDSGSLGFNIIGG-RPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNG 71
Query: 321 MSLLGASHQEAVNTLRYSGHQISLTVCK 348
L A+H +AV + + I + V +
Sbjct: 72 RDLSRATHDQAVEAFKTAKEPIVVQVLR 99
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGF+I+GG + GIFIS I+ GG A LSG+LR GD+IL+VNG D+ +HE
Sbjct: 24 LGFNIVGG---------EXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE 74
Query: 231 EAVLALLEPCPEILLKIQHDPH 252
+A +AL + + Q+ P
Sbjct: 75 QAAIALKNAGQTVTIIAQYKPE 96
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 10/76 (13%)
Query: 269 LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH 328
LG +I GG G EG+FI+ I +GG A G L+ G ++L VNG+ L ASH
Sbjct: 24 LGFNIVGGEXG----------EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASH 73
Query: 329 QEAVNTLRYSGHQISL 344
++A L+ +G +++
Sbjct: 74 EQAAIALKNAGQTVTI 89
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISL 62
G ++L VNG+ L ASH++A L+ +G +++
Sbjct: 57 GDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 89
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGFSI GG + P+ GIF+S I GG A +G L++GDR+L++NG DV++ H+
Sbjct: 20 LGFSIAGGKGST--PYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHD 77
Query: 231 EAVLALLEPCPEILLKIQHD 250
AV L P I L ++ +
Sbjct: 78 HAVSLLTAASPTIALLLERE 97
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 261 LIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNG 320
L R E LG I GG + P D G+F+++I GGAA R G L+VG R+L +NG
Sbjct: 13 LARSE-RGLGFSIAGG---KGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSING 68
Query: 321 MSLLGASHQEAVNTLRYSGHQISL 344
+ + A H AV+ L + I+L
Sbjct: 69 VDVTEARHDHAVSLLTAASPTIAL 92
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGF+I+GG + GIFIS I+ GG A LSG+LR GD+IL+VNG D+ +HE
Sbjct: 19 LGFNIVGG---------EXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE 69
Query: 231 EAVLALLEPCPEILLKIQHDPH 252
+A +AL + + Q+ P
Sbjct: 70 QAAIALKNAGQTVTIIAQYKPE 91
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 10/76 (13%)
Query: 269 LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH 328
LG +I GG G EG+FI+ I +GG A G L+ G ++L VNG+ L ASH
Sbjct: 19 LGFNIVGGEXG----------EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASH 68
Query: 329 QEAVNTLRYSGHQISL 344
++A L+ +G +++
Sbjct: 69 EQAAIALKNAGQTVTI 84
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISL 62
G ++L VNG+ L ASH++A L+ +G +++
Sbjct: 52 GDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 84
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 62.0 bits (149), Expect = 6e-10, Method: Composition-based stats.
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 8/97 (8%)
Query: 256 FQEITLIRQE---GEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKV 311
FQ +T++ + G K LG I GG+ GN D +++TKI GGAA++DGRL+V
Sbjct: 20 FQSMTVVEIKLFKGPKGLGFSIAGGV----GNQHIPGDNSIYVTKIIDGGAAQKDGRLQV 75
Query: 312 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
G RLL VN SL +H+EAV L+ + + L V K
Sbjct: 76 GDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGK 112
Score = 58.5 bits (140), Expect = 6e-09, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 11/84 (13%)
Query: 169 GP--LGFSIIGGTDHSCIPFGQHKPG---IFISHIVPGGVAALSGKLRMGDRILAVNGRD 223
GP LGFSI GG + QH PG I+++ I+ GG A G+L++GDR+L VN
Sbjct: 33 GPKGLGFSIAGGVGN------QHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYS 86
Query: 224 VSKVTHEEAVLALLEPCPEILLKI 247
+ +VTHEEAV L + LK+
Sbjct: 87 LEEVTHEEAVAILKNTSEVVYLKV 110
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
VG RLL VN SL +H+EAV L+ + + L V K
Sbjct: 75 VGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGK 112
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 62.0 bits (149), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 269 LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH 328
LG I GG+ GN D ++ITKI GGAA++DGRL++G RLL VN +L H
Sbjct: 16 LGFSIAGGI----GNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRH 71
Query: 329 QEAVNTLRYSGHQISLTVCK 348
+EAV +L+ + + L V K
Sbjct: 72 EEAVASLKNTSDMVYLKVAK 91
Score = 59.7 bits (143), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 57/96 (59%), Gaps = 12/96 (12%)
Query: 157 SLFLQDVVLPKSGP--LGFSIIGGTDHSCIPFGQHKPG---IFISHIVPGGVAALSGKLR 211
S+ + +V L K GP LGFSI GG + QH PG I+I+ I+ GG A G+L+
Sbjct: 1 SMTIMEVNLLK-GPKGLGFSIAGGIGN------QHIPGDNSIYITKIIEGGAAQKDGRLQ 53
Query: 212 MGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKI 247
+GDR+LAVN ++ V HEEAV +L + LK+
Sbjct: 54 IGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKV 89
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
+G RLL VN +L H+EAV +L+ + + L V K
Sbjct: 54 IGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 91
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 61.6 bits (148), Expect = 7e-10, Method: Composition-based stats.
Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Query: 254 EGFQEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVG 312
E EI LI+ G K LG I GG+ GN D +++TKI GGAA +DG+L++G
Sbjct: 2 EKIMEIKLIK--GPKGLGFSIAGGV----GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIG 55
Query: 313 MRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
+LL VN +SL +H+EAV L+ + + L V K
Sbjct: 56 DKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAK 91
Score = 61.6 bits (148), Expect = 8e-10, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 11/84 (13%)
Query: 169 GP--LGFSIIGGTDHSCIPFGQHKPG---IFISHIVPGGVAALSGKLRMGDRILAVNGRD 223
GP LGFSI GG + QH PG I+++ I+ GG A GKL++GD++LAVN
Sbjct: 12 GPKGLGFSIAGGVGN------QHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVS 65
Query: 224 VSKVTHEEAVLALLEPCPEILLKI 247
+ +VTHEEAV AL + LK+
Sbjct: 66 LEEVTHEEAVTALKNTSDFVYLKV 89
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
+G +LL VN +SL +H+EAV L+ + + L V K
Sbjct: 54 IGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAK 91
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 61.6 bits (148), Expect = 8e-10, Method: Composition-based stats.
Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 7/99 (7%)
Query: 251 PHPEGFQEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRL 309
P E EI LI+ G K LG I GG+ GN D +++TKI GGAA +DG+L
Sbjct: 4 PVSEKIMEIKLIK--GPKGLGFSIAGGV----GNQHWPGDNSIYVTKIIEGGAAHKDGKL 57
Query: 310 KVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
++G +LL VN ++L +H+EAV L+ + + L V K
Sbjct: 58 QIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAK 96
Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 11/84 (13%)
Query: 169 GP--LGFSIIGGTDHSCIPFGQHKPG---IFISHIVPGGVAALSGKLRMGDRILAVNGRD 223
GP LGFSI GG + QH PG I+++ I+ GG A GKL++GD++LAVN
Sbjct: 17 GPKGLGFSIAGGVGN------QHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVA 70
Query: 224 VSKVTHEEAVLALLEPCPEILLKI 247
+ +VTHEEAV AL + LK+
Sbjct: 71 LEEVTHEEAVTALKNTSDFVYLKV 94
Score = 28.5 bits (62), Expect = 7.6, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
+G +LL VN ++L +H+EAV L+ + + L V K
Sbjct: 59 IGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAK 96
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 10/90 (11%)
Query: 163 VVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
VVL K S LGF+I+GG D GIF+S I+ GG A LSG+L+ GD+IL+VNG
Sbjct: 7 VVLHKGSTGLGFNIVGGED---------GEGIFVSFILAGGPADLSGELQRGDQILSVNG 57
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
D+ +HE+A AL + + Q+ P
Sbjct: 58 IDLRGASHEQAAAALKGAGQTVTIIAQYQP 87
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 10/76 (13%)
Query: 269 LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH 328
LG +I GG ++ EG+F++ I +GG A G L+ G ++L VNG+ L GASH
Sbjct: 16 LGFNIVGG----------EDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASH 65
Query: 329 QEAVNTLRYSGHQISL 344
++A L+ +G +++
Sbjct: 66 EQAAAALKGAGQTVTI 81
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISL 62
G ++L VNG+ L GASH++A L+ +G +++
Sbjct: 49 GDQILSVNGIDLRGASHEQAAAALKGAGQTVTI 81
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 11/84 (13%)
Query: 169 GP--LGFSIIGGTDHSCIPFGQHKPG---IFISHIVPGGVAALSGKLRMGDRILAVNGRD 223
GP LGFSI GG + QH PG I+++ IV GG A GKL++GD++LAVN
Sbjct: 12 GPKGLGFSIAGGVGN------QHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVG 65
Query: 224 VSKVTHEEAVLALLEPCPEILLKI 247
+ +VTHEEAV AL + LK+
Sbjct: 66 LEEVTHEEAVTALKNTSDFVYLKV 89
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 254 EGFQEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVG 312
E EI LI+ G K LG I GG+ GN D +++T I GGAA +DG+L++G
Sbjct: 2 EKIMEIKLIK--GPKGLGFSIAGGV----GNQHIPGDNSIYVTSIVEGGAAHKDGKLQIG 55
Query: 313 MRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
+LL VN + L +H+EAV L+ + + L V K
Sbjct: 56 DKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKVAK 91
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 11/84 (13%)
Query: 169 GP--LGFSIIGGTDHSCIPFGQHKPG---IFISHIVPGGVAALSGKLRMGDRILAVNGRD 223
GP LGFSI GG + QH PG I+++ I+ GG A GKL++GD++LAVN
Sbjct: 20 GPKGLGFSIAGGVGN------QHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVC 73
Query: 224 VSKVTHEEAVLALLEPCPEILLKI 247
+ +VTHEEAV AL + LK+
Sbjct: 74 LEEVTHEEAVTALKNTSDFVYLKV 97
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 254 EGFQEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVG 312
E EI LI+ G K LG I GG+ GN D +++TKI GGAA +DG+L++G
Sbjct: 10 EKIMEIKLIK--GPKGLGFSIAGGV----GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIG 63
Query: 313 MRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
+LL VN + L +H+EAV L+ + + L V K
Sbjct: 64 DKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAK 99
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 11/84 (13%)
Query: 169 GP--LGFSIIGGTDHSCIPFGQHKPG---IFISHIVPGGVAALSGKLRMGDRILAVNGRD 223
GP LGFSI GG + QH PG I+++ I+ GG A GKL++GD++LAVN
Sbjct: 12 GPKGLGFSIAGGVGN------QHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVG 65
Query: 224 VSKVTHEEAVLALLEPCPEILLKI 247
+ +VTHEEAV AL + LK+
Sbjct: 66 LEEVTHEEAVTALKNTSDFVYLKV 89
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 254 EGFQEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVG 312
E EI LI+ G K LG I GG+ GN D +++TKI GGAA +DG+L++G
Sbjct: 2 EKIMEIKLIK--GPKGLGFSIAGGV----GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIG 55
Query: 313 MRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
+LL VN + L +H+EAV L+ + + L V K
Sbjct: 56 DKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKVAK 91
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 11/84 (13%)
Query: 169 GP--LGFSIIGGTDHSCIPFGQHKPG---IFISHIVPGGVAALSGKLRMGDRILAVNGRD 223
GP LGFSI GG + QH PG I+++ I+ GG A GKL++GD++LAVN
Sbjct: 12 GPKGLGFSIAGGVGN------QHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVC 65
Query: 224 VSKVTHEEAVLALLEPCPEILLKI 247
+ +VTHEEAV AL + LK+
Sbjct: 66 LEEVTHEEAVTALKNTSDFVYLKV 89
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 254 EGFQEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVG 312
E EI LI+ G K LG I GG+ GN D +++TKI GGAA +DG+L++G
Sbjct: 2 EKIMEIKLIK--GPKGLGFSIAGGV----GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIG 55
Query: 313 MRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
+LL VN + L +H+EAV L+ + + L V K
Sbjct: 56 DKLLAVNSVCLEEVTHEEAVTALKNTSDFVYLKVAK 91
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGFSI GGTD+ P IFI+ I+ GG AA G+LR+ D IL VN DV VTH
Sbjct: 24 LGFSIAGGTDN---PHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHS 80
Query: 231 EAVLALLEPCPEILLKIQ 248
+AV AL E + L ++
Sbjct: 81 KAVEALKEAGSIVRLYVK 98
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
++EITL R LG I GG NP +D +FITKI +GGAA +DGRL+V +
Sbjct: 12 YEEITLERGN-SGLGFSIAGGT----DNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCI 66
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
L VN + + +H +AV L+ +G + L V
Sbjct: 67 LRVNEVDVRDVTHSKAVEALKEAGSIVRLYV 97
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 7/99 (7%)
Query: 251 PHPEGFQEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRL 309
P E EI LI+ G K LG I GG+ GN D +++TKI GGAA +DG+L
Sbjct: 5 PVSEKIMEIKLIK--GPKGLGFSIAGGV----GNQHIPGDNSIYVTKIIEGGAAHKDGKL 58
Query: 310 KVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
++G +LL VN + L +H+EAV L+ + + L V K
Sbjct: 59 QIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAK 97
Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 11/84 (13%)
Query: 169 GP--LGFSIIGGTDHSCIPFGQHKPG---IFISHIVPGGVAALSGKLRMGDRILAVNGRD 223
GP LGFSI GG + QH PG I+++ I+ GG A GKL++GD++LAVN
Sbjct: 18 GPKGLGFSIAGGVGN------QHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVC 71
Query: 224 VSKVTHEEAVLALLEPCPEILLKI 247
+ +VTHEEAV AL + LK+
Sbjct: 72 LEEVTHEEAVTALKNTSDFVYLKV 95
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 11/84 (13%)
Query: 169 GP--LGFSIIGGTDHSCIPFGQHKPG---IFISHIVPGGVAALSGKLRMGDRILAVNGRD 223
GP LGFSI GG + QH PG I+++ I+ GG A GKL++GD++LAVN
Sbjct: 8 GPKGLGFSIAGGVGN------QHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVC 61
Query: 224 VSKVTHEEAVLALLEPCPEILLKI 247
+ +VTHEEAV AL + LK+
Sbjct: 62 LEEVTHEEAVTALKNTSDFVYLKV 85
Score = 58.9 bits (141), Expect = 6e-09, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Query: 258 EITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
EI LI+ G K LG I GG+ GN D +++TKI GGAA +DG+L++G +LL
Sbjct: 2 EIKLIK--GPKGLGFSIAGGV----GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLL 55
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
VN + L +H+EAV L+ + + L V K
Sbjct: 56 AVNNVCLEEVTHEEAVTALKNTSDFVYLKVAK 87
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 11/83 (13%)
Query: 169 GP--LGFSIIGGTDHSCIPFGQHKPG---IFISHIVPGGVAALSGKLRMGDRILAVNGRD 223
GP LGFSI GG + QH PG I+++ I+ GG A GKL++GD++LAVN
Sbjct: 7 GPKGLGFSIAGGVGN------QHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVC 60
Query: 224 VSKVTHEEAVLALLEPCPEILLK 246
+ +VTHEEAV AL + LK
Sbjct: 61 LEEVTHEEAVTALKNTSDFVYLK 83
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 7/80 (8%)
Query: 258 EITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
EI LI+ G K LG I GG+ GN D +++TKI GGAA +DG+L++G +LL
Sbjct: 1 EIKLIK--GPKGLGFSIAGGV----GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLL 54
Query: 317 EVNGMSLLGASHQEAVNTLR 336
VN + L +H+EAV L+
Sbjct: 55 AVNSVCLEEVTHEEAVTALK 74
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 59.3 bits (142), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGFSI GGTD+ P IFI+ I+ GG AA G+LR+ D IL VN DV VTH
Sbjct: 14 LGFSIAGGTDN---PHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHS 70
Query: 231 EAVLALLE 238
+AV AL E
Sbjct: 71 KAVEALKE 78
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
++EITL R LG I GG NP +D +FITKI +GGAA +DGRL+V +
Sbjct: 2 YEEITLERGN-SGLGFSIAGG----TDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCI 56
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
L VN + +H +AV L+ +G + L V
Sbjct: 57 LRVNEADVRDVTHSKAVEALKEAGSIVRLYV 87
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 251 PHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLK 310
P P E+ L + + LG+ + GG+ G+++ + GAA+ DGR+
Sbjct: 1 PKPGDIFEVELAKND-NSLGISVTGGVN------TSVRHGGIYVKAVIPQGAAESDGRIH 53
Query: 311 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
G R+L VNG+SL GA+H++AV TLR +G + L + KG
Sbjct: 54 KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 92
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG S+ GG + S GI++ ++P G A G++ GDR+LAVNG + TH+
Sbjct: 18 LGISVTGGVNTSV-----RHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHK 72
Query: 231 EAVLAL 236
+AV L
Sbjct: 73 QAVETL 78
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 GGIQTRVPWTGEQAGVILAAGEVV----IHPVGMRLLEVNGMSLLGASHQEAVNTLRYSG 57
GG+ T V G ++ G IH G R+L VNG+SL GA+H++AV TLR +G
Sbjct: 24 GGVNTSVRHGGIYVKAVIPQGAAESDGRIHK-GDRVLAVNGVSLEGATHKQAVETLRNTG 82
Query: 58 HQISLTVCKG 67
+ L + KG
Sbjct: 83 QVVHLLLEKG 92
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 8/86 (9%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
VV ++G LG SI GG ++ +P I IS I PG A S LR+GD IL+VNG
Sbjct: 9 VVKQEAGGLGISIKGGRENR-MP-------ILISKIFPGLAADQSRALRLGDAILSVNGT 60
Query: 223 DVSKVTHEEAVLALLEPCPEILLKIQ 248
D+ + TH++AV AL E+LL+++
Sbjct: 61 DLRQATHDQAVQALKRAGKEVLLEVK 86
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+ + +++QE LG+ IKGG +N + I+KI G AA + L++G +L
Sbjct: 5 RRVRVVKQEAGGLGISIKGG---------RENRMPILISKIFPGLAADQSRALRLGDAIL 55
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
VNG L A+H +AV L+ +G ++ L V
Sbjct: 56 SVNGTDLRQATHDQAVQALKRAGKEVLLEV 85
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 2 GGIQTRVPWTGEQAGVILAAGEVVIHPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQIS 61
GG + R+P + LAA + +G +L VNG L A+H +AV L+ +G ++
Sbjct: 23 GGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVL 82
Query: 62 LTV 64
L V
Sbjct: 83 LEV 85
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 281 RGNPLDKN--DEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYS 338
+GN +N D G+F+ I +GGAA +DGRL+V +L+ VNG SLLG ++QEA+ TLR S
Sbjct: 25 KGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLRRS 84
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLAL 236
GIF+ I+ GG A+ G+LR+ D+++AVNG + ++EA+ L
Sbjct: 37 GIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETL 81
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 32 RLLEVNGMSLLGASHQEAVNTLRYS 56
+L+ VNG SLLG ++QEA+ TLR S
Sbjct: 60 QLIAVNGESLLGKANQEAMETLRRS 84
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 281 RGNPLDKN--DEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYS 338
+GN +N D G+F+ I +GGAA +DGRL+V +L+ VNG SLLG ++QEA+ TLR S
Sbjct: 28 KGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLRRS 87
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLAL 236
GIF+ I+ GG A+ G+LR+ D+++AVNG + ++EA+ L
Sbjct: 40 GIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETL 84
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYS 56
V +L+ VNG SLLG ++QEA+ TLR S
Sbjct: 60 VNDQLIAVNGESLLGKANQEAMETLRRS 87
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
E+TL +EG G I+GG R V IT + GG A R+G +K G RLL
Sbjct: 6 EVTL-HKEGNTFGFVIRGGAHDDR-----NKSRPVVITSVRPGGPADREGTIKPGDRLLS 59
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTV 346
V+G+ LLG +H EA++ L+ G + +L +
Sbjct: 60 VDGIRLLGTTHAEAMSILKQCGQEAALLI 88
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 157 SLFLQDVVLPKSG-PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDR 215
S+ +V L K G GF I GG + +P + I+ + PGG A G ++ GDR
Sbjct: 1 SMRTVEVTLHKEGNTFGFVIRGGAHDD---RNKSRP-VVITSVRPGGPADREGTIKPGDR 56
Query: 216 ILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHD 250
+L+V+G + TH EA+ L + E L I++D
Sbjct: 57 LLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEYD 91
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 23 EVVIHPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
E I P G RLL V+G+ LLG +H EA++ L+ G + +L +
Sbjct: 48 EGTIKP-GDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLI 88
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
E+ L + +G LG+ + GG+ G+++ I GAA+ DGR+ G R+L
Sbjct: 7 EVELAKTDGS-LGISVTGGVN------TSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLA 59
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
VNG+SL GA+H++AV TLR +G + L + KG
Sbjct: 60 VNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 91
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 162 DVVLPKS-GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
+V L K+ G LG S+ GG + S GI++ I+P G A G++ GDR+LAVN
Sbjct: 7 EVELAKTDGSLGISVTGGVNTSV-----RHGGIYVKAIIPKGAAESDGRIHKGDRVLAVN 61
Query: 221 GRDVSKVTHEEAVLAL 236
G + TH++AV L
Sbjct: 62 GVSLEGATHKQAVETL 77
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 GGIQTRVPWTGEQAGVILAAGEVV----IHPVGMRLLEVNGMSLLGASHQEAVNTLRYSG 57
GG+ T V G I+ G IH G R+L VNG+SL GA+H++AV TLR +G
Sbjct: 23 GGVNTSVRHGGIYVKAIIPKGAAESDGRIHK-GDRVLAVNGVSLEGATHKQAVETLRNTG 81
Query: 58 HQISLTVCKG 67
+ L + KG
Sbjct: 82 QVVHLLLEKG 91
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 11/84 (13%)
Query: 169 GP--LGFSIIGGTDHSCIPFGQHKPG---IFISHIVPGGVAALSGKLRMGDRILAVNGRD 223
GP LGFSI GG + QH PG I+++ I+ GG A G+L++GD+ILAVN
Sbjct: 12 GPKGLGFSIAGGVGN------QHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG 65
Query: 224 VSKVTHEEAVLALLEPCPEILLKI 247
+ V HE+AV AL + LK+
Sbjct: 66 LEDVMHEDAVAALKNTYDVVYLKV 89
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 254 EGFQEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVG 312
E EI LI+ G K LG I GG+ GN D +++TKI GGAA +DGRL++G
Sbjct: 2 EKVMEIKLIK--GPKGLGFSIAGGV----GNQHIPGDNSIYVTKIIEGGAAHKDGRLQIG 55
Query: 313 MRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
++L VN + L H++AV L+ + + L V K
Sbjct: 56 DKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 91
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
E+ L + +G LG+ + GG+ G+++ I GAA+ DGR+ G R+L
Sbjct: 15 EVELAKTDGS-LGISVTGGVN------TSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLA 67
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
VNG+SL GA+H++AV TLR +G + L + KG
Sbjct: 68 VNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 99
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 162 DVVLPKS-GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
+V L K+ G LG S+ GG + S GI++ I+P G A G++ GDR+LAVN
Sbjct: 15 EVELAKTDGSLGISVTGGVNTSV-----RHGGIYVKAIIPKGAAESDGRIHKGDRVLAVN 69
Query: 221 GRDVSKVTHEEAVLAL 236
G + TH++AV L
Sbjct: 70 GVSLEGATHKQAVETL 85
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 GGIQTRVPWTGEQAGVILAAGEVV----IHPVGMRLLEVNGMSLLGASHQEAVNTLRYSG 57
GG+ T V G I+ G IH G R+L VNG+SL GA+H++AV TLR +G
Sbjct: 31 GGVNTSVRHGGIYVKAIIPKGAAESDGRIHK-GDRVLAVNGVSLEGATHKQAVETLRNTG 89
Query: 58 HQISLTVCKG 67
+ L + KG
Sbjct: 90 QVVHLLLEKG 99
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 171 LGFSIIGGTDH--SCIPFGQHK--PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSK 226
LGFSI GG D S PF + K GI+++ + GG A ++G L++GD+I+ VNG D++
Sbjct: 40 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTM 98
Query: 227 VTHEEAVLALLEPCPEIL 244
VTH++A L + E++
Sbjct: 99 VTHDQARKRLTKRSEEVV 116
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 258 EITLIRQ-EGEKLGMHIKGGL-RGQRGNPL--DKNDEGVFITKINSGGAAKRDGRLKVGM 313
EI +RQ E LG I GG+ + NP DK D+G+++T+++ GG A+ G L++G
Sbjct: 28 EIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGD 86
Query: 314 RLLEVNGMSLLGASHQEAVNTL 335
++++VNG + +H +A L
Sbjct: 87 KIMQVNGWDMTMVTHDQARKRL 108
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
G+++ I GAA+ DGR+ G R+L VNG+SL GA+H++AV TLR +G + L + KG
Sbjct: 38 GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 96
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 162 DVVLPKS-GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
+V L K+ G LG S+ D + GI++ I+P G A G++ GDR+LAVN
Sbjct: 7 EVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVN 66
Query: 221 GRDVSKVTHEEAVLAL 236
G + TH++AV L
Sbjct: 67 GVSLEGATHKQAVETL 82
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 GGIQTRVPWTGEQAGVILAAGEVV----IHPVGMRLLEVNGMSLLGASHQEAVNTLRYSG 57
GG+ T V G I+ G IH G R+L VNG+SL GA+H++AV TLR +G
Sbjct: 28 GGVNTSVRHGGIYVKAIIPKGAAESDGRIHK-GDRVLAVNGVSLEGATHKQAVETLRNTG 86
Query: 58 HQISLTVCKG 67
+ L + KG
Sbjct: 87 QVVHLLLEKG 96
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
G+++ + GAA+ DGR+ G R+L VNG+SL GA+H++AV TLR +G + L + KG
Sbjct: 43 GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 101
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLAL 236
GI++ ++P G A G++ GDR+LAVNG + TH++AV L
Sbjct: 43 GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL 87
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 GGIQTRVPWTGEQAGVILAAGEVV----IHPVGMRLLEVNGMSLLGASHQEAVNTLRYSG 57
GG+ T V G ++ G IH G R+L VNG+SL GA+H++AV TLR +G
Sbjct: 33 GGVNTSVRHGGIYVKAVIPQGAAESDGRIHK-GDRVLAVNGVSLEGATHKQAVETLRNTG 91
Query: 58 HQISLTVCKG 67
+ L + KG
Sbjct: 92 QVVHLLLEKG 101
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 249 HDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGR 308
H H QEI + ++ +LG I GG+ G RGNP +D+G+F+T++ G A +
Sbjct: 3 HMGHELAKQEIRVRVEKDPELGFSISGGV-GGRGNPFRPDDDGIFVTRVQPEGPASK--L 59
Query: 309 LKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
L+ G ++++ NG S + H +AV+ L+ + + L + +
Sbjct: 60 LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 99
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V + K LGFSI GG PF GIF++ + P G A S L+ GD+I+ NG
Sbjct: 15 VRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGY 72
Query: 223 DVSKVTHEEAVLAL 236
+ H +AV L
Sbjct: 73 SFINIEHGQAVSLL 86
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 171 LGFSIIGGTDH--SCIPFGQHK--PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSK 226
LGFSI GG D S PF + K GI+++ + GG A ++G L++GD+I+ VNG D++
Sbjct: 29 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTM 87
Query: 227 VTHEEAVLALLEPCPEIL 244
VTH++A L + E++
Sbjct: 88 VTHDQARKRLTKRSEEVV 105
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 258 EITLIRQ-EGEKLGMHIKGGL-RGQRGNPL--DKNDEGVFITKINSGGAAKRDGRLKVGM 313
EI +RQ E LG I GG+ + NP DK D+G+++T+++ GG A+ G L++G
Sbjct: 17 EIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGD 75
Query: 314 RLLEVNGMSLLGASHQEAVNTL 335
++++VNG + +H +A L
Sbjct: 76 KIMQVNGWDMTMVTHDQARKRL 97
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 171 LGFSIIGGTDH--SCIPFGQHK--PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSK 226
LGFSI GG D S PF + K GI+++ + GG A ++G L++GD+I+ VNG D++
Sbjct: 19 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTM 77
Query: 227 VTHEEAVLALLEPCPEIL 244
VTH++A L + E++
Sbjct: 78 VTHDQARKRLTKRSEEVV 95
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 258 EITLIRQ-EGEKLGMHIKGGL-RGQRGNPL--DKNDEGVFITKINSGGAAKRDGRLKVGM 313
EI +RQ E LG I GG+ + NP DK D+G+++T+++ GG A+ G L++G
Sbjct: 7 EIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGD 65
Query: 314 RLLEVNGMSLLGASHQEAVNTL 335
++++VNG + +H +A L
Sbjct: 66 KIMQVNGWDMTMVTHDQARKRL 87
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 171 LGFSIIGGTDH--SCIPFGQHK--PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSK 226
LGFSI GG D S PF + K GI+++ + GG A ++G L++GD+I+ VNG D++
Sbjct: 21 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTM 79
Query: 227 VTHEEAVLALLEPCPEIL 244
VTH++A L + E++
Sbjct: 80 VTHDQARKRLTKRSEEVV 97
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 258 EITLIRQ-EGEKLGMHIKGGL-RGQRGNPL--DKNDEGVFITKINSGGAAKRDGRLKVGM 313
EI +RQ E LG I GG+ + NP DK D+G+++T+++ GG A+ G L++G
Sbjct: 9 EIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGD 67
Query: 314 RLLEVNGMSLLGASHQEAVNTLRYSGHQI 342
++++VNG + +H +A L ++
Sbjct: 68 KIMQVNGWDMTMVTHDQARKRLTKRSEEV 96
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
G+++ + GAA+ DGR+ G R+L VNG+SL GA+H++AV TLR +G + L + KG
Sbjct: 34 GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 92
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG S+ GG + S GI++ ++P G A G++ GDR+LAVNG + TH+
Sbjct: 18 LGISVTGGVNTSV-----RHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHK 72
Query: 231 EAVLAL 236
+AV L
Sbjct: 73 QAVETL 78
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2 GGIQTRVPWTGEQAGVILAAGEVV----IHPVGMRLLEVNGMSLLGASHQEAVNTLRYSG 57
GG+ T V G ++ G IH G R+L VNG+SL GA+H++AV TLR +G
Sbjct: 24 GGVNTSVRHGGIYVKAVIPQGAAESDGRIHK-GDRVLAVNGVSLEGATHKQAVETLRNTG 82
Query: 58 HQISLTVCKG 67
+ L + KG
Sbjct: 83 QVVHLLLEKG 92
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 171 LGFSIIGGTDH--SCIPFGQHK--PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSK 226
LGFSI GG D S PF + K GI+++ + GG A ++G L++GD+I+ VNG D++
Sbjct: 29 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTM 87
Query: 227 VTHEEAVLALLEPCPEIL 244
VTH++A L + E++
Sbjct: 88 VTHDQARKRLTKRSEEVV 105
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 258 EITLIRQ-EGEKLGMHIKGGL-RGQRGNPL--DKNDEGVFITKINSGGAAKRDGRLKVGM 313
EI +RQ E LG I GG+ + NP DK D+G+++T+++ GG A+ G L++G
Sbjct: 17 EIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGD 75
Query: 314 RLLEVNGMSLLGASHQEAVNTL 335
++++VNG + +H +A L
Sbjct: 76 KIMQVNGWDMTMVTHDQARKRL 97
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 268 KLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGAS 327
+LG I GG+ G RGNP +D+G+F+T++ G A + L+ G ++++ NG S +
Sbjct: 4 ELGFSISGGV-GGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIE 60
Query: 328 HQEAVNTLRYSGHQISLTVCKGFERG---DIERRASTSEGSRSVTQSMSSLD 376
H +AV+ L+ + + L + + G +I R GS V+ ++L+
Sbjct: 61 HGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLE 112
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGFSI GG PF GIF++ + P G A S L+ GD+I+ NG + H
Sbjct: 5 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHG 62
Query: 231 EAVLAL 236
+AV L
Sbjct: 63 QAVSLL 68
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 268 KLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGAS 327
+LG I GG+ G RGNP +D+G+F+T++ G A + L+ G ++++ NG S +
Sbjct: 3 ELGFSISGGV-GGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIE 59
Query: 328 HQEAVNTLRYSGHQISLTVCKGFERG---DIERRASTSEGSRSVTQSMSSLD 376
H +AV+ L+ + + L + + G +I R GS V+ ++L+
Sbjct: 60 HGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLE 111
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGFSI GG PF GIF++ + P G A S L+ GD+I+ NG + H
Sbjct: 4 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHG 61
Query: 231 EAVLAL 236
+AV L
Sbjct: 62 QAVSLL 67
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 194 FISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEP--CPEILLKIQHD- 250
IS+I A G L++GDR++A+NG T EEA L + ++ L+I+ D
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDV 98
Query: 251 -----PHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKR 305
P F + L ++ +LG+ I + G+PL I+ I G A R
Sbjct: 99 AESVIPSSGTFH-VKLPKKHSVELGITISSPSSRKPGDPL-------VISDIKKGSVAHR 150
Query: 306 DGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
G L++G +LL ++ + L S ++AV L+ + L + K
Sbjct: 151 TGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRK 193
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 190 KPG--IFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEIL-LK 246
KPG + IS I G VA +G L +GD++LA++ + + E+AV +L+ C +++ LK
Sbjct: 132 KPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAV-QILQQCEDLVKLK 190
Query: 247 IQHD 250
I+ D
Sbjct: 191 IRKD 194
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 171 LGFSIIGGTDH--SCIPFGQHK--PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSK 226
LGFSI GG D S PF + K GI+++ + GG A ++G L++GD+I+ VNG D++
Sbjct: 29 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTM 87
Query: 227 VTHEEAVLALLEPCPEIL 244
VTH++A L + E++
Sbjct: 88 VTHDQARKRLTKRSEEVV 105
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 258 EITLIRQ-EGEKLGMHIKGGL-RGQRGNPL--DKNDEGVFITKINSGGAAKRDGRLKVGM 313
EI +RQ E LG I GG+ + NP DK D+G+++T+++ GG A+ G L++G
Sbjct: 17 EIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGD 75
Query: 314 RLLEVNGMSLLGASHQEAVNTL 335
++++VNG + +H +A L
Sbjct: 76 KIMQVNGWDMTMVTHDQARKRL 97
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 171 LGFSIIGGTDH--SCIPFGQHK--PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSK 226
LGFSI GG D S PF + K GI+++ + GG A ++G L++GD+I+ VNG D++
Sbjct: 30 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTM 88
Query: 227 VTHEEAVLALLEPCPEIL 244
VTH++A L + E++
Sbjct: 89 VTHDQARKRLTKRSEEVV 106
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 258 EITLIRQ-EGEKLGMHIKGGL-RGQRGNPL--DKNDEGVFITKINSGGAAKRDGRLKVGM 313
EI +RQ E LG I GG+ + NP DK D+G+++T+++ GG A+ G L++G
Sbjct: 18 EIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGD 76
Query: 314 RLLEVNGMSLLGASHQEAVNTL 335
++++VNG + +H +A L
Sbjct: 77 KIMQVNGWDMTMVTHDQARKRL 98
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 255 GFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMR 314
G EI + ++ +LG I GG+ G RGNP +D+G+F+T++ G A + L+ G +
Sbjct: 1 GSMEIRVRVEKDPELGFSISGGV-GGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDK 57
Query: 315 LLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
+++ NG S + H +AV+ L+ + + L + +
Sbjct: 58 IIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 91
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V + K LGFSI GG PF GIF++ + P G A S L+ GD+I+ NG
Sbjct: 7 VRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGY 64
Query: 223 DVSKVTHEEAVLAL 236
+ H +AV L
Sbjct: 65 SFINIEHGQAVSLL 78
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 269 LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH 328
LG+ I GG + PL+ + I ++ GAA RDGRL G ++LEVNG+ L +SH
Sbjct: 30 LGLSIVGG----KDTPLN----AIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSH 81
Query: 329 QEAVNTLRYSGHQISLTVCK 348
+EA+ LR + ++ L V +
Sbjct: 82 EEAITALRQTPQKVRLVVYR 101
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG SI+GG D P I I + G AA G+L GD+IL VNG D+ +HE
Sbjct: 30 LGLSIVGGKD---TPLN----AIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHE 82
Query: 231 EAVLALLEPCPEILLKIQHD 250
EA+ AL + ++ L + D
Sbjct: 83 EAITALRQTPQKVRLVVYRD 102
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
G ++LEVNG+ L +SH+EA+ LR + ++ L V +
Sbjct: 64 AGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYR 101
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 9/90 (10%)
Query: 163 VVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
V LPK+ LGF+I+GG + Q+ P I+IS ++PGGVA G L+ GD++L+VNG
Sbjct: 9 VELPKTDEGLGFNIMGGKE-------QNSP-IYISRVIPGGVADRHGGLKRGDQLLSVNG 60
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
V HE+AV L + L ++ P
Sbjct: 61 VSVEGEQHEKAVELLKAAQGSVKLVVRSGP 90
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 267 EKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGA 326
E LG +I GG + + ++I+++ GG A R G LK G +LL VNG+S+ G
Sbjct: 16 EGLGFNIMGG---------KEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGE 66
Query: 327 SHQEAVNTLRYSGHQISLTVCKGFERG 353
H++AV L+ + + L V G G
Sbjct: 67 QHEKAVELLKAAQGSVKLVVRSGPSSG 93
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERG 71
G +LL VNG+S+ G H++AV L+ + + L V G G
Sbjct: 52 GDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSGPSSG 93
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 8/82 (9%)
Query: 168 SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKV 227
+G LG SI GG ++K I IS I G A + L +GD IL+VNG D+S
Sbjct: 15 AGGLGISIKGGR--------ENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSA 66
Query: 228 THEEAVLALLEPCPEILLKIQH 249
TH+EAV AL + E++L++++
Sbjct: 67 THDEAVQALKKTGKEVVLEVKY 88
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+ +T+ + + LG+ IKGG R N + + I+KI G AA + L VG +L
Sbjct: 6 RRVTVRKADAGGLGISIKGG----RENKMP-----ILISKIFKGLAADQTEALFVGDAIL 56
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
VNG L A+H EAV L+ +G ++ L V
Sbjct: 57 SVNGEDLSSATHDEAVQALKKTGKEVVLEV 86
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 2 GGIQTRVPWTGEQAGVILAAGEVVIHPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQIS 61
GG + ++P + LAA + VG +L VNG L A+H EAV L+ +G ++
Sbjct: 24 GGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV 83
Query: 62 LTV 64
L V
Sbjct: 84 LEV 86
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 9/66 (13%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGFSI GG++H GI++S + PG +A G LR+GD+IL VN + +++VTH
Sbjct: 23 LGFSIRGGSEHGV--------GIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHA 73
Query: 231 EAVLAL 236
EAV AL
Sbjct: 74 EAVKAL 79
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 10/72 (13%)
Query: 267 EKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGA 326
E LG I+GG ++ G++++ + G A+++G L+VG ++L VN SL
Sbjct: 21 EGLGFSIRGG---------SEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARV 70
Query: 327 SHQEAVNTLRYS 338
+H EAV L+ S
Sbjct: 71 THAEAVKALKGS 82
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 24/163 (14%)
Query: 98 LDTDVFKQGQWSTVVTAHQRLDTG-----YGLPSNSTVAAHISSSLKPSI----LVTYNF 148
++ D K + + HQ +D L N + +++P I V Y+
Sbjct: 17 IENDAEKDYLYDVLRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQVEYDQ 76
Query: 149 FSPSVRSSSLFLQDVVLPKSGP--LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAAL 206
+P RS L ++V L + P LG S+ GG + C G+FISH++ GG A
Sbjct: 77 LTPR-RSRKL--KEVRLDRLHPEGLGLSVRGGLEFGC--------GLFISHLIKGGQADS 125
Query: 207 SGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQH 249
G L++GD I+ +NG +S THEE V+ L+ + +K++H
Sbjct: 126 VG-LQVGDEIVRINGYSISSCTHEE-VINLIRTEKTVSIKVRH 166
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 17/127 (13%)
Query: 217 LAVNGRDVSKVTHEEAVLALLEPC-PEILLK--IQHDP----HPEGFQEITLIRQEGEKL 269
+AV D+ V +E + L L + P I LK +++D +E+ L R E L
Sbjct: 39 VAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQVEYDQLTPRRSRKLKEVRLDRLHPEGL 98
Query: 270 GMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQ 329
G+ ++GGL + G+FI+ + GG A G L+VG ++ +NG S+ +H+
Sbjct: 99 GLSVRGGL---------EFGCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHE 148
Query: 330 EAVNTLR 336
E +N +R
Sbjct: 149 EVINLIR 155
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 269 LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH 328
LG+ +KG + G D G+FI I GGAA +DGRL++ +L+ VNG +LLG S+
Sbjct: 39 LGVSLKGNKSRETGT-----DLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSN 93
Query: 329 QEAVNTLRYS 338
EA+ TLR S
Sbjct: 94 HEAMETLRRS 103
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 18/96 (18%)
Query: 149 FSPSVRSSSLFLQDVVLPKSGP--LGFSIIG------GTDHSCIPFGQHKPGIFISHIVP 200
++ S+ SS ++ L SG LG S+ G GTD GIFI I+
Sbjct: 15 YALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDL----------GIFIKSIIH 64
Query: 201 GGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLAL 236
GG A G+LRM D+++AVNG + ++ EA+ L
Sbjct: 65 GGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETL 100
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 32 RLLEVNGMSLLGASHQEAVNTLRYS 56
+L+ VNG +LLG S+ EA+ TLR S
Sbjct: 79 QLIAVNGETLLGKSNHEAMETLRRS 103
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 16/91 (17%)
Query: 155 SSSLFLQDVVLPKS-----GP--LGFSIIGG--TDHSCIPFGQHKPGIFISHIVPGGVAA 205
+ +L+ Q + KS GP LGFSI+GG + H +P I++ + G A+
Sbjct: 15 TENLYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLP-------IYVKTVFAKGAAS 67
Query: 206 LSGKLRMGDRILAVNGRDVSKVTHEEAVLAL 236
G+L+ GD+I+AVNG+ + VTHEEAV L
Sbjct: 68 EDGRLKRGDQIIAVNGQSLEGVTHEEAVAIL 98
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+ ITL R + LG I GG G+P D +++ + + GAA DGRLK G +++
Sbjct: 27 KSITLERGP-DGLGFSIVGGY----GSP--HGDLPIYVKTVFAKGAASEDGRLKRGDQII 79
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
VNG SL G +H+EAV L+ + ++L V
Sbjct: 80 AVNGQSLEGVTHEEAVAILKRTKGTVTLMV 109
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G +++ VNG SL G +H+EAV L+ + ++L V
Sbjct: 75 GDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 109
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 170 PLGFSIIGGTDHSCIPFGQHK-PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVS 225
PLGF I G+ P G K PGIFIS +VPGG+A +G L + D +L VNG +VS
Sbjct: 43 PLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVS 99
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 247 IQHDPHPEGFQEITLIRQEGEK-LGMHIKGGLRGQRGNP--LDKNDEGVFITKINSGGAA 303
I D PE + + L + EK LG +I+ G R P L+K G+FI+++ GG A
Sbjct: 21 IDVDILPETHRRVRLCKYGTEKPLGFYIRDG-SSVRVTPHGLEKV-PGIFISRLVPGGLA 78
Query: 304 KRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERG 353
+ G L V +LEVNG+ + G S + + + + + +TV +R
Sbjct: 79 QSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRN 128
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 10/68 (14%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG SI+G ++ G+F+S IV GG+A G+L GD+IL VNG DV T +
Sbjct: 18 LGLSIVGK---------RNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNAT-Q 67
Query: 231 EAVLALLE 238
EAV ALL+
Sbjct: 68 EAVAALLK 75
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
I L ++ G+ LG+ I G +ND GVF++ I GG A DGRL G ++L V
Sbjct: 8 IGLQKKPGKGLGLSIVG----------KRNDTGVFVSDIVKGGIADADGRLMQGDQILMV 57
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTV 346
NG + A+ + L+ S ++L V
Sbjct: 58 NGEDVRNATQEAVAALLKCSLGTVTLEV 85
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 269 LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH 328
LGM + G+ G P G++I + G A DGRL +G R+LEVNG SLLG +
Sbjct: 21 LGMGLIDGMHTHLGAP------GLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGY 74
Query: 329 QEAVNTLRYSGHQISLTVCK 348
AV+ +R+ G ++ V K
Sbjct: 75 LRAVDLIRHGGKKMRFLVAK 94
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 191 PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAV 233
PG++I ++PG AA G+L +GDRIL VNG + + + AV
Sbjct: 36 PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAV 78
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 4 IQTRVPWTGEQAGVILAAGEVVIHPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLT 63
IQT +P + A L+ G+ R+LEVNG SLLG + AV+ +R+ G ++
Sbjct: 40 IQTLLPGSPAAADGRLSLGD--------RILEVNGSSLLGLGYLRAVDLIRHGGKKMRFL 91
Query: 64 VCK 66
V K
Sbjct: 92 VAK 94
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 51.6 bits (122), Expect = 9e-07, Method: Composition-based stats.
Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 16/94 (17%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHK-------PGIFISHIVPGGVAALSGKLRMGDR 215
V L K+G F I CI G+ K GIFI IVP A L G+L++GDR
Sbjct: 9 VTLDKTGKKSFGI-------CIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDR 61
Query: 216 ILAVNGRDVSKVTHEEAVLALLEPCP-EILLKIQ 248
IL++NG+DV T E+AV+ L++ +I L+IQ
Sbjct: 62 ILSLNGKDVRNST-EQAVIDLIKEADFKIELEIQ 94
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
+TL + + G+ I +RG+ + + G+FI I A GRLKVG R+L +
Sbjct: 9 VTLDKTGKKSFGICI---VRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTV 346
NG + ++ Q ++ ++ + +I L +
Sbjct: 66 NGKDVRNSTEQAVIDLIKEADFKIELEI 93
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 8/82 (9%)
Query: 168 SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKV 227
+G LG SI GG ++K I IS I G A + L +GD IL+VNG D+S
Sbjct: 11 AGGLGISIKGGR--------ENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSA 62
Query: 228 THEEAVLALLEPCPEILLKIQH 249
TH+EAV AL + E++L++++
Sbjct: 63 THDEAVQALKKTGKEVVLEVKY 84
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+ +T+ + + LG+ IKGG +N + I+KI G AA + L VG +L
Sbjct: 2 RRVTVRKADAGGLGISIKGG---------RENKMPILISKIFKGLAADQTEALFVGDAIL 52
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
VNG L A+H EAV L+ +G ++ L V
Sbjct: 53 SVNGEDLSSATHDEAVQALKKTGKEVVLEV 82
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 2 GGIQTRVPWTGEQAGVILAAGEVVIHPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQIS 61
GG + ++P + LAA + VG +L VNG L A+H EAV L+ +G ++
Sbjct: 20 GGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV 79
Query: 62 LTV 64
L V
Sbjct: 80 LEV 82
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 8/82 (9%)
Query: 168 SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKV 227
+G LG SI GG ++K I IS I G A + L +GD IL+VNG D+S
Sbjct: 11 AGGLGISIKGGR--------ENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSA 62
Query: 228 THEEAVLALLEPCPEILLKIQH 249
TH+EAV AL + E++L++++
Sbjct: 63 THDEAVQALKKTGKEVVLEVKY 84
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+ +T+ + + LG+ IKGG +N + I+KI G AA + L VG +L
Sbjct: 2 RRVTVRKADAGGLGISIKGG---------RENKMPILISKIFKGLAADQTEALFVGDAIL 52
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
VNG L A+H EAV L+ +G ++ L V
Sbjct: 53 SVNGEDLSSATHDEAVQALKKTGKEVVLEV 82
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 2 GGIQTRVPWTGEQAGVILAAGEVVIHPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQIS 61
GG + ++P + LAA + VG +L VNG L A+H EAV L+ +G ++
Sbjct: 20 GGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV 79
Query: 62 LTV 64
L V
Sbjct: 80 LEV 82
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKND--EGVFITKINSGGAAKRDGRLKVGMR 314
+ + L R+ + LG+ I GG RG G+ L + G+FI + A ++G LK G R
Sbjct: 6 RRVELWREPSKSLGISIVGG-RGM-GSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 63
Query: 315 LLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
++EV+GM L ASH++AV +R +G+ + V
Sbjct: 64 IVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 95
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 168 SGPLGFSIIGGTDH-SCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSK 226
S LG SI+GG S + G+ GIFI H++ A +G L+ GDRI+ V+G D+
Sbjct: 15 SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRD 74
Query: 227 VTHEEAVLALLEPCPEILLKIQ 248
+HE+AV A+ + ++ +Q
Sbjct: 75 ASHEQAVEAIRKAGNPVVFMVQ 96
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G R++EV+GM L ASH++AV +R +G+ + V
Sbjct: 61 GDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 95
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKND--EGVFITKINSGGAAKRDGRLKVGMR 314
+ + L R+ + LG+ I GG RG G+ L + G+FI + A ++G LK G R
Sbjct: 26 RRVELWREPSKSLGISIVGG-RGM-GSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 83
Query: 315 LLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
++EV+GM L ASH++AV +R +G+ + V
Sbjct: 84 IVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 168 SGPLGFSIIGGTDH-SCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSK 226
S LG SI+GG S + G+ GIFI H++ A +G L+ GDRI+ V+G D+
Sbjct: 35 SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRD 94
Query: 227 VTHEEAVLALLEPCPEILLKIQ 248
+HE+AV A+ + ++ +Q
Sbjct: 95 ASHEQAVEAIRKAGNPVVFMVQ 116
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G R++EV+GM L ASH++AV +R +G+ + V
Sbjct: 81 GDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 8/82 (9%)
Query: 168 SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKV 227
+G LG SI GG ++K I IS I G A + L +GD IL+VNG D+S
Sbjct: 88 AGGLGISIKGGR--------ENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSA 139
Query: 228 THEEAVLALLEPCPEILLKIQH 249
TH+EAV AL + E++L++++
Sbjct: 140 THDEAVQALKKTGKEVVLEVKY 161
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+ +T+ + + LG+ IKGG +N + I+KI G AA + L VG +L
Sbjct: 79 RRVTVRKADAGGLGISIKGG---------RENKMPILISKIFKGLAADQTEALFVGDAIL 129
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
VNG L A+H EAV L+ +G ++ L V
Sbjct: 130 SVNGEDLSSATHDEAVQALKKTGKEVVLEV 159
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 19 LAAGEVVIHPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
LAA + VG +L VNG L A+H EAV L+ +G ++ L V
Sbjct: 114 LAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 159
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 189 HKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLAL 236
KPGIFISH+ PG ++A G L +GD+I+ VNG D S + H+EAV L
Sbjct: 39 QKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVL 85
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
I+L+ G LG I G P+ K G+FI+ + G + G L++G +++EV
Sbjct: 21 ISLVGSRG--LGCSISSG-------PIQK--PGIFISHVKPGSLSAEVG-LEIGDQIVEV 68
Query: 319 NGMSLLGASHQEAVNTLRYS-GHQISLTVCKGFERGDIERRASTS 362
NG+ H+EAVN L+ S IS+ G E +R +S
Sbjct: 69 NGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRELFMTDRSGPSS 113
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYS-GHQISLTVCKGFERGDIERRASTS 80
+G +++EVNG+ H+EAVN L+ S IS+ G E +R +S
Sbjct: 61 IGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRELFMTDRSGPSS 113
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 269 LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH 328
LG+ I G + ++ P G+F+ I A + DGR+++G +++ V+G +L G ++
Sbjct: 17 LGITIAGYIGDKKLEP-----SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTN 71
Query: 329 QEAVNTLRYSGHQISLTVCK 348
Q+AV LR++G + LT+ +
Sbjct: 72 QQAVEVLRHTGQTVLLTLMR 91
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKI 247
GIF+ I G++++GD+I+AV+G ++ T+++AV L +LL +
Sbjct: 34 GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 89
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
+G +++ V+G +L G ++Q+AV LR++G + LT+ +
Sbjct: 54 IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 91
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 189 HKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLAL 236
KPGIFISH+ PG ++A G L +GD+I+ VNG D S + H+EAV L
Sbjct: 25 QKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVL 71
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 277 LRGQRG-------NPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQ 329
L G RG P+ K G+FI+ + G + G L++G +++EVNG+ H+
Sbjct: 9 LVGSRGLGCSISSGPIQK--PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHK 65
Query: 330 EAVNTLRYS-GHQISLTVCKGFE 351
EAVN L+ S IS+ G E
Sbjct: 66 EAVNVLKSSRSLTISIVAAAGRE 88
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYS-GHQISLTVCKGFE 69
+G +++EVNG+ H+EAVN L+ S IS+ G E
Sbjct: 47 IGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRE 88
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 170 PLGFSIIGGTDHSCIPFGQHK-PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVT 228
PLGF I GT G K PGIFIS +VPGG+A +G L + D ++ VNG +V+ T
Sbjct: 18 PLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKT 77
Query: 229 HEEAVLALLEPCPEILLKIQ 248
++ ++ +++ ++
Sbjct: 78 LDQVTDMMVANSSNLIITVK 97
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 254 EGFQEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVG 312
E + + L++ +K LG +I+ G + + G+FI+++ GG A+ G L V
Sbjct: 3 ETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVN 62
Query: 313 MRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFER 352
++EVNG+ + G + + + + + + +TV +R
Sbjct: 63 DEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPANQR 102
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 170 PLGFSIIGGTDHSCIPFGQHK-PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVT 228
PLGF I GT G K PGIFIS +VPGG+A +G L + D ++ VNG +V+ T
Sbjct: 16 PLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKT 75
Query: 229 HEEAVLALLEPCPEILLKIQ 248
++ ++ +++ ++
Sbjct: 76 LDQVTDMMVANSSNLIITVK 95
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 254 EGFQEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVG 312
E + + L++ +K LG +I+ G + + G+FI+++ GG A+ G L V
Sbjct: 1 ETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVN 60
Query: 313 MRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
++EVNG+ + G + + + + + + +TV
Sbjct: 61 DEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITV 94
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 269 LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH 328
LG+ I GG G + I ++ GAA +DGRL G ++LEVNG+ L A+H
Sbjct: 17 LGLSIVGGSDTLLG--------AIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATH 68
Query: 329 QEAVNTLRYSGHQISLTV 346
EA+N LR + ++ LT+
Sbjct: 69 DEAINVLRQTPQRVRLTL 86
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG SI+GG+D I I + G A G+L GD+IL VNG D+ K TH+
Sbjct: 17 LGLSIVGGSDTLL-------GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHD 69
Query: 231 EAVLALLEPCPEILLKIQHDPHP 253
EA+ L + + L + D P
Sbjct: 70 EAINVLRQTPQRVRLTLYRDEAP 92
Score = 36.2 bits (82), Expect = 0.033, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 14/57 (24%)
Query: 22 GEVVIHPV--------------GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G ++IH V G ++LEVNG+ L A+H EA+N LR + ++ LT+
Sbjct: 30 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTL 86
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 9/82 (10%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGF+I+GG D GIFIS I+ GG A LSG+LR GDRI++VN D+ +HE
Sbjct: 20 LGFNIVGGEDGE---------GIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHE 70
Query: 231 EAVLALLEPCPEILLKIQHDPH 252
+A AL + + Q+ P
Sbjct: 71 QAAAALKNAGQAVTIVAQYRPE 92
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 269 LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH 328
LG +I GG ++ EG+FI+ I +GG A G L+ G R++ VN + L ASH
Sbjct: 20 LGFNIVGG----------EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASH 69
Query: 329 QEAVNTLRYSGHQISLT 345
++A L+ +G +++
Sbjct: 70 EQAAAALKNAGQAVTIV 86
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
G+F+ + GGAA+RDGR++V +++EV+G+SL+G + A LR + + + +
Sbjct: 112 GIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGR 169
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 171 LGFSIIG---GTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKV 227
LG SIIG G D G K GIF+ + GG A G++++ D+I+ V+G + V
Sbjct: 93 LGISIIGMGVGADA-----GLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGV 147
Query: 228 THEEAVLAL 236
T A L
Sbjct: 148 TQNFAATVL 156
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 18/127 (14%)
Query: 135 SSSLKPSILVTYNFFSPSVRSSSLFLQDVVLPKS------------GPLGFSIIGGTDHS 182
S + PSI + ++F R S + ++P++ PLGF I GT
Sbjct: 2 SKTKAPSISIPHDF-----RQVSAIIDVDIVPETHRRVRLLKHGSDKPLGFYIRDGTSVR 56
Query: 183 CIPFGQHK-PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCP 241
G K PGIFIS +VPGG+A +G L + D ++ VNG +V+ T ++ ++
Sbjct: 57 VTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSS 116
Query: 242 EILLKIQ 248
+++ ++
Sbjct: 117 NLIITVK 123
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 247 IQHDPHPEGFQEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKR 305
I D PE + + L++ +K LG +I+ G + + G+FI+++ GG A+
Sbjct: 22 IDVDIVPETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAES 81
Query: 306 DGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFER 352
G L V ++EVNG+ + G + + + + + + +TV +R
Sbjct: 82 TGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPANQR 128
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 18/127 (14%)
Query: 135 SSSLKPSILVTYNFFSPSVRSSSLFLQDVVLPKS------------GPLGFSIIGGTDHS 182
S + PSI + ++F R S + ++P++ PLGF I GT
Sbjct: 2 SKTKAPSISIPHDF-----RCVSAIIDVDIVPETHRRVRLCKHGSDKPLGFYIRDGTSVR 56
Query: 183 CIPFGQHK-PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCP 241
G K PGIFIS +VPGG+A +G L + D ++ VNG +V+ T ++ ++
Sbjct: 57 VTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSS 116
Query: 242 EILLKIQ 248
+++ ++
Sbjct: 117 NLIITVK 123
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 247 IQHDPHPEGFQEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKR 305
I D PE + + L + +K LG +I+ G + + G+FI+++ GG A+
Sbjct: 22 IDVDIVPETHRRVRLCKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAES 81
Query: 306 DGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFER 352
G L V ++EVNG+ + G + + + + + + +TV +R
Sbjct: 82 TGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPANQR 128
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
G+F+ + GGAA+RDGR++V +++EV+G+SL+G + A LR + + + +
Sbjct: 41 GIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGR 98
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 155 SSSLFLQDVVLPKS-GPLGFSIIG---GTDHSCIPFGQHKPGIFISHIVPGGVAALSGKL 210
SS L L V L K LG SIIG G D G K GIF+ + GG A G++
Sbjct: 5 SSGLELFPVELEKDEDGLGISIIGMGVGADA-----GLEKLGIFVKTVTEGGAAQRDGRI 59
Query: 211 RMGDRILAVNGRDVSKVTHEEAVLAL 236
++ D+I+ V+G + VT A L
Sbjct: 60 QVNDQIVEVDGISLVGVTQNFAATVL 85
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 11/90 (12%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+++ L+ +G LG+ I+GG + G++IT ++ G A+ G LKVG ++L
Sbjct: 22 KKVNLVLGDGRSLGLTIRGGA---------EYGLGIYITGVDPGSEAEGSG-LKVGDQIL 71
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
EVNG S L H EAV L+ S H I LTV
Sbjct: 72 EVNGRSFLNILHDEAVRLLKSSRHLI-LTV 100
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 10/87 (11%)
Query: 162 DVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
++VL LG +I GG ++ GI+I+ + PG A SG L++GD+IL VNG
Sbjct: 25 NLVLGDGRSLGLTIRGGAEYGL--------GIYITGVDPGSEAEGSG-LKVGDQILEVNG 75
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQ 248
R + H+EAV LL+ ++L ++
Sbjct: 76 RSFLNILHDEAV-RLLKSSRHLILTVK 101
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
VG ++LEVNG S L H EAV L+ S H I LTV
Sbjct: 66 VGDQILEVNGRSFLNILHDEAVRLLKSSRHLI-LTV 100
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
G+F+ + GGAA+RDGR++V +++EV+G+SL+G + A LR + + + +
Sbjct: 36 GIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGR 93
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 171 LGFSIIG---GTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKV 227
LG SIIG G D G K GIF+ + GG A G++++ D+I+ V+G + V
Sbjct: 17 LGISIIGMGVGADA-----GLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGV 71
Query: 228 THEEAVLAL 236
T A L
Sbjct: 72 TQNFAATVL 80
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V L K +G SI+ + GQ K GI++ +V GG A + G+L GD++L+V+GR
Sbjct: 9 VTLKKQNGMGLSIV-----AAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 63
Query: 223 DVSKVTHEEA 232
+ ++ E A
Sbjct: 64 SLVGLSQERA 73
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
+TL +Q G +G+ I +G DK G+++ + GGAA DGRL G +LL V
Sbjct: 9 VTLKKQNG--MGLSIVAA----KGAGQDKL--GIYVKSVVKGGAADVDGRLAAGDQLLSV 60
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
+G SL+G S + A + + ++L V K
Sbjct: 61 DGRSLVGLSQERAAELMTRTSSVVTLEVAK 90
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V L K +G SI+ + GQ K GI++ +V GG A + G+L GD++L+V+GR
Sbjct: 9 VTLKKQNGMGLSIV-----AAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 63
Query: 223 DVSKVTHEEA 232
+ ++ E A
Sbjct: 64 SLVGLSQERA 73
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
+TL +Q G +G+ I +G DK G+++ + GGAA DGRL G +LL V
Sbjct: 9 VTLKKQNG--MGLSIVAA----KGAGQDKL--GIYVKSVVKGGAADVDGRLAAGDQLLSV 60
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
+G SL+G S + A + + ++L V K
Sbjct: 61 DGRSLVGLSQERAAELMTRTSSVVTLEVAK 90
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 9/54 (16%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDV 224
LGF+I+GG D GIFIS I+ GG A LSG+LR GDRI++VN D+
Sbjct: 17 LGFNIVGGEDGE---------GIFISFILAGGPADLSGELRKGDRIISVNSVDL 61
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 269 LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH 328
LG +I GG ++ EG+FI+ I +GG A G L+ G R++ VN + L ASH
Sbjct: 17 LGFNIVGG----------EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASH 66
Query: 329 QEAVNTLRYSGHQISLT 345
++A L+ +G +++
Sbjct: 67 EQAAAALKNAGQAVTIV 83
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 282 GNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ 341
G D+ D G++I I GGA DGR++ G LL+VN ++ S+ +AV LR Q
Sbjct: 18 GQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQ 77
Query: 342 ---ISLTVCKGFE 351
ISLTV K ++
Sbjct: 78 TGPISLTVAKAWD 90
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG SI+G ++ + GI+I I+ GG A G++ GD +L VN + ++++
Sbjct: 12 LGISIVGQSND------RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSND 65
Query: 231 EAVLALLE 238
+AV L E
Sbjct: 66 DAVRVLRE 73
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 17/150 (11%)
Query: 186 FGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILL 245
+G P + I++++ GG A SGKL +GD+I+++NG + + L C I+
Sbjct: 24 WGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLP--------LSTCQSIIK 75
Query: 246 KIQHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKR 305
+++ ++ ++R + + LR Q G + I + GG A+R
Sbjct: 76 GLKNQSR----VKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNG----IICSLMRGGIAER 127
Query: 306 DGRLKVGMRLLEVNGMSLLGASHQEAVNTL 335
G ++VG R++E+NG S++ H++ V+ L
Sbjct: 128 GG-VRVGHRIIEINGQSVVATPHEKIVHIL 156
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 194 FISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLK 246
I ++ GG+A G +R+G RI+ +NG+ V HE+ V L EI +K
Sbjct: 115 IICSLMRGGIAE-RGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMK 166
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 6/97 (6%)
Query: 162 DVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
+++ P SG LGFS++G + + + GIF+ I G VA G+L+ D+ILA+NG
Sbjct: 25 ELLKPPSGGLGFSVVGLRSEN-----RGELGIFVQEIQEGSVAHRDGRLKETDQILAING 79
Query: 222 RDVSK-VTHEEAVLALLEPCPEILLKIQHDPHPEGFQ 257
+ + + +TH++A+ L + + L I P+ ++
Sbjct: 80 QALDQTITHQQAISILQKAKDTVQLVIARGSLPQYYK 116
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 286 DKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSL-LGASHQEAVNTLRYSGHQISL 344
++ + G+F+ +I G A RDGRLK ++L +NG +L +HQ+A++ L+ + + L
Sbjct: 45 NRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQL 104
Query: 345 TVCKG 349
+ +G
Sbjct: 105 VIARG 109
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGF 350
G+F+ + GGAA RDGR++V L+EV+G SL+G + A + LR + ++ + +
Sbjct: 36 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR-- 93
Query: 351 ERGDIERRASTSEGSRSVTQSM 372
ER SE ++ + Q++
Sbjct: 94 -----ERPGEQSEVAQLIQQTL 110
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 171 LGFSIIG---GTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKV 227
LG SIIG G D G K GIF+ + GG A G++++ D ++ V+G + V
Sbjct: 17 LGISIIGMGAGAD-----MGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGV 71
Query: 228 THEEAVLALLEPCPEILLKIQHDPHPEGFQEITLIRQ 264
T A L + I + E + LI+Q
Sbjct: 72 TQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQ 108
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 292 VFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ--ISLTVCK 348
+++ I GAA +DGRLK G RL+EVNG+ L+G S +E V+ LR + + +SL V +
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFR 118
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGFSI + G P I++ +I+P G A G+L+ GDR++ VNG D+ + E
Sbjct: 43 LGFSIT----SRDVTIGGSAP-IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQE 97
Query: 231 EAVLAL----LEPCPEILLKIQHD 250
E V L +E +L+ Q D
Sbjct: 98 EVVSLLRSTKMEGTVSLLVFRQED 121
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQ--ISLTVCK 66
G RL+EVNG+ L+G S +E V+ LR + + +SL V +
Sbjct: 80 GDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFR 118
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V L K +G SI+ + GQ K GI++ +V GG A + G+L GD++L+V+GR
Sbjct: 15 VTLKKQNGMGLSIV-----AAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 69
Query: 223 DVSKVTHEEAVLALLEPCPEILLKI 247
+ ++ E A + + L++
Sbjct: 70 SLVGLSQERAAELMTRTSSVVTLEV 94
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
+TL +Q G +G+ I +G DK G+++ + GGAA DGRL G +LL V
Sbjct: 15 VTLKKQNG--MGLSIVAA----KGAGQDKL--GIYVKSVVKGGAADVDGRLAAGDQLLSV 66
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIER 357
+G SL+G S + A + + ++L V K +G I R
Sbjct: 67 DGRSLVGLSQERAAELMTRTSSVVTLEVAK---QGAIRR 102
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
G+F+ + GGAA RDGR++V L+EV+G SL+G + A + LR + ++ + +
Sbjct: 112 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR 169
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 171 LGFSIIG---GTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKV 227
LG SIIG G D G K GIF+ + GG A G++++ D ++ V+G + V
Sbjct: 93 LGISIIGMGAGAD-----MGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGV 147
Query: 228 THEEAVLAL 236
T A L
Sbjct: 148 TQSFAASVL 156
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
G+F+ + GGAA RDGR++V L+EV+G SL+G + A + LR + ++ + +
Sbjct: 112 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR 169
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 171 LGFSIIG---GTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKV 227
LG SIIG G D G K GIF+ + GG A G++++ D ++ V+G + V
Sbjct: 93 LGISIIGMGAGAD-----MGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGV 147
Query: 228 THEEAVLAL 236
T A L
Sbjct: 148 TQSFAASVL 156
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V L K +G SI+ + GQ K GI++ +V GG A + G+L GD++L+V+GR
Sbjct: 15 VTLKKQNGMGLSIV-----AAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 69
Query: 223 DVSKVTHEEA 232
+ ++ E A
Sbjct: 70 SLVGLSQERA 79
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
+TL +Q G +G+ I +G DK G+++ + GGAA DGRL G +LL V
Sbjct: 15 VTLKKQNG--MGLSIVAA----KGAGQDK--LGIYVKSVVKGGAADVDGRLAAGDQLLSV 66
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
+G SL+G S + A + + ++L V K
Sbjct: 67 DGRSLVGLSQERAAELMTRTSSVVTLEVAK 96
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 168 SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKV 227
S PLG SI+ G K GI++S + G +A +G L GD++L NG ++
Sbjct: 29 SEPLGISIVSG----------EKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSA 77
Query: 228 THEEAVLALLEPCPEILLKIQHDPH 252
T ++A L + + C I + Q++PH
Sbjct: 78 TEQQARLIIGQQCDTITILAQYNPH 102
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 12/70 (17%)
Query: 262 IRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGM 321
+++ E LG+ I G +G G++++K+ G A + G L+ G +LLE NG+
Sbjct: 25 VQKGSEPLGISIVSGEKG-----------GIYVSKVTVGSIAHQAG-LEYGDQLLEFNGI 72
Query: 322 SLLGASHQEA 331
+L A+ Q+A
Sbjct: 73 NLRSATEQQA 82
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2
(Homologous To Drosophila Dsh)
Length = 100
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 282 GNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ 341
G ++ D G++I I GGA DGR++ G LL+VN M+ S+ +AV LR H+
Sbjct: 25 GQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK 84
Query: 342 ---ISLTVCKGFE 351
I LTV K +E
Sbjct: 85 PGPIVLTVAKCWE 97
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG SI+G ++ + GI+I I+ GG A G++ GD +L VN + ++++
Sbjct: 19 LGISIVGQSNE------RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSND 72
Query: 231 EAVLALLEPCPEILLKIQHDPHP 253
+AV +L I H P P
Sbjct: 73 DAV--------RVLRDIVHKPGP 87
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 292 VFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ--ISLTVCK 348
+++ I GAA +DGRLK G RL+EVNG+ L G S +E V+ LR + + +SL V +
Sbjct: 35 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFR 93
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGFSI + G P I++ +I+P G A G+L+ GDR++ VNG D++ + E
Sbjct: 18 LGFSIT----SRDVTIGGSAP-IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQE 72
Query: 231 EAV 233
E V
Sbjct: 73 EVV 75
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQ--ISLTVCK 66
G RL+EVNG+ L G S +E V+ LR + + +SL V +
Sbjct: 55 GDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFR 93
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 292 VFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ--ISLTVCK 348
+++ I GAA +DGRLK G RL+EVNG+ L G S +E V+ LR + + +SL V +
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFR 99
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGFSI + G P I++ +I+P G A G+L+ GDR++ VNG D++ + E
Sbjct: 24 LGFSIT----SRDVTIGGSAP-IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQE 78
Query: 231 EAVLAL----LEPCPEILLKIQHDP-HP 253
E V L +E +L+ Q + HP
Sbjct: 79 EVVSLLRSTKMEGTVSLLVFRQEEAFHP 106
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQ--ISLTVCK 66
G RL+EVNG+ L G S +E V+ LR + + +SL V +
Sbjct: 61 GDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFR 99
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
E+ +I E +K G+ + L G + D++ +F+ IN G A DGR+++G LLE
Sbjct: 25 ELHIIELEKDKNGLGLS--LAGNK----DRSRMSIFVVGINPEGPAAADGRMRIGDELLE 78
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
+N L G SHQ A ++ + ++ L +
Sbjct: 79 INNQILYGRSHQNASAIIKTAPSKVKLVFIR 109
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG S+ G D S + IF+ I P G AA G++R+GD +L +N + + +H+
Sbjct: 38 LGLSLAGNKDRSRM-------SIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQ 90
Query: 231 EAVLALLEPCP 241
A A+++ P
Sbjct: 91 NAS-AIIKTAP 100
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 9/105 (8%)
Query: 255 GFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMR 314
G + + + + + LG+ I GG+ G+PL D +FI ++ G A + +L+VG R
Sbjct: 24 GLRTVEMKKGPTDSLGISIAGGV----GSPL--GDVPIFIAMMHPTGVAAQTQKLRVGDR 77
Query: 315 LLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRA 359
++ + G S G +H +AVN L+ + I + V G GD+ +
Sbjct: 78 IVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAG---GDVSETS 119
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 167 KSGP---LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRD 223
K GP LG SI GG P G IFI+ + P GVAA + KLR+GDRI+ + G
Sbjct: 31 KKGPTDSLGISIAGGVGS---PLGDVP--IFIAMMHPTGVAAQTQKLRVGDRIVTICGTS 85
Query: 224 VSKVTHEEAVLALLEPCPEILLKI 247
+TH +AV L I +++
Sbjct: 86 TEGMTHTQAVNLLKNASGSIEMQV 109
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 20/103 (19%)
Query: 242 EILLKIQHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGG 301
E ++ IQ DP GE LGM + GG + D +++ + GG
Sbjct: 25 EKVVNIQKDP--------------GESLGMTVAGGASHREW------DLPIYVISVEPGG 64
Query: 302 AAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISL 344
RDGR+K G LL V+G+ L S EAV L+ + I L
Sbjct: 65 VISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVL 107
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG ++ GG H + I++ + PGGV + G+++ GD +L V+G ++++V+
Sbjct: 38 LGMTVAGGASHR-----EWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRS 92
Query: 231 EAVLALLEPCPEILLK 246
EAV L I+LK
Sbjct: 93 EAVALLKRTSSSIVLK 108
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 147 NFFSPSVRSSSLFLQDVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAAL 206
N + +R L +D LG SI GG +H +P I IS I PG A
Sbjct: 22 NLYFQGIRKVLLLKED-----HEGLGISITGGKEHG-VP-------ILISEIHPGQPADR 68
Query: 207 SGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKI 247
G L +GD ILAVNG ++ H+EAV L + EI ++
Sbjct: 69 CGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 109
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 9/94 (9%)
Query: 254 EGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGM 313
+G +++ L++++ E LG+ I GG + G P + I++I+ G A R G L VG
Sbjct: 26 QGIRKVLLLKEDHEGLGISITGG--KEHGVP-------ILISEIHPGQPADRCGGLHVGD 76
Query: 314 RLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 347
+L VNG++L H+EAV L +I V
Sbjct: 77 AILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 110
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+ L+R++G+ LG+ I G + G G+++ + G AA +G ++V +++
Sbjct: 18 NVELVRKDGQSLGIRIVGYV----GTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVA 73
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
V+G+++ G ++ + V LR +G + LT+ +
Sbjct: 74 VDGVNIQGFANHDVVEVLRNAGQVVHLTLVR 104
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 171 LGFSIIG--GTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVT 228
LG I+G GT H+ GI++ ++PG A +G +++ D+I+AV+G ++
Sbjct: 29 LGIRIVGYVGTSHTG-----EASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFA 83
Query: 229 HEEAVLAL 236
+ + V L
Sbjct: 84 NHDVVEVL 91
>pdb|2PKT|A Chain A, Crystal Structure Of The Human Clp-36 (Pdlim1) Bound To
The C-Terminal Peptide Of Human Alpha-Actinin-1
Length = 91
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 9/76 (11%)
Query: 157 SLFLQDVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRI 216
S+ Q + L GP GF ++GG D +P + IS + PG AAL+ L +GD I
Sbjct: 1 SMTTQQIDLQGPGPWGFRLVGGKDF-------EQP-LAISRVTPGSKAALA-NLCIGDVI 51
Query: 217 LAVNGRDVSKVTHEEA 232
A++G + S +TH EA
Sbjct: 52 TAIDGENTSNMTHLEA 67
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 282 GNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ 341
G ++ D G++I I GGA DGR++ G LL+VN M+ S+ +AV LR H+
Sbjct: 25 GQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK 84
Query: 342 ---ISLTVCKGFERGDI 355
I LTV K G+I
Sbjct: 85 PGPIVLTVAKSGGGGEI 101
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG SI+G ++ + GI+I I+ GG A G++ GD +L VN + ++++
Sbjct: 19 LGISIVGQSNE------RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSND 72
Query: 231 EAVLALLEPCPEILLKIQHDPHP 253
+AV +L I H P P
Sbjct: 73 DAV--------RVLRDIVHKPGP 87
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 282 GNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ 341
G ++ D G++I I GGA DGR++ G LL+VN M+ S+ +AV LR H+
Sbjct: 25 GQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK 84
Query: 342 ---ISLTVCK 348
I LTV K
Sbjct: 85 PGPIVLTVAK 94
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG SI+G ++ + GI+I I+ GG A G++ GD +L VN + ++++
Sbjct: 19 LGISIVGQSNE------RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSND 72
Query: 231 EAVLALLEPCPEILLKIQHDPHP 253
+AV +L I H P P
Sbjct: 73 DAV--------RVLRDIVHKPGP 87
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its
Inhibitor
Length = 90
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 282 GNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ 341
G D+ D G++I I GGA DGR++ G LL+VN ++ S+ +AV LR Q
Sbjct: 21 GQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQ 80
Query: 342 ---ISLTVCK 348
ISLTV K
Sbjct: 81 TGPISLTVAK 90
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG SI+G ++ + GI+I I+ GG A G++ GD +L VN + ++++
Sbjct: 15 LGISIVGQSND------RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSND 68
Query: 231 EAVLALLEPCPE 242
+AV L E +
Sbjct: 69 DAVRVLREIVSQ 80
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 259 ITLIRQEGEKLGMHIKGGL----RGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMR 314
+ + R+ LG+ I GG R + G L +G+FI ++ A + LK G +
Sbjct: 19 VEIFREPNVSLGISIVGGQTVIKRLKNGEEL----KGIFIKQVLEDSPAGKTNALKTGDK 74
Query: 315 LLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
+LEV+G+ L ASH EAV ++ +G+ + V
Sbjct: 75 ILEVSGVDLQNASHSEAVEAIKNAGNPVVFIV 106
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 171 LGFSIIGG-TDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTH 229
LG SI+GG T + G+ GIFI ++ A + L+ GD+IL V+G D+ +H
Sbjct: 29 LGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASH 88
Query: 230 EEAVLALLEPCPEILLKIQ 248
EAV A+ ++ +Q
Sbjct: 89 SEAVEAIKNAGNPVVFIVQ 107
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 21 AGEVVIHPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
AG+ G ++LEV+G+ L ASH EAV ++ +G+ + V
Sbjct: 63 AGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIV 106
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGF I+GG G+ + IVPGG+A G+L+ GD IL + G +V +T E
Sbjct: 28 LGFGIVGG----------KTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSE 77
Query: 231 EAVLALLEPCPEILLKIQHDP 251
+ L + + + DP
Sbjct: 78 QVAQVLRNCGNSVRMLVARDP 98
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 13/109 (11%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
+E+ LI +G LG I GG GV + I GG A RDGRL+ G +
Sbjct: 16 VEEVELI-NDGSGLGFGIVGG-----------KTSGVVVRTIVPGGLADRDGRLQTGDHI 63
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEG 364
L++ G ++ G + ++ LR G+ + + V + GDI + S G
Sbjct: 64 LKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVAR-DPAGDISVTSGPSSG 111
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 247 IQHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRD 306
+ DP F+ IT+ ++ G LG+ I GG+ G PL V+I ++ GG +D
Sbjct: 10 LDRDP---AFRVITVTKETG--LGLKILGGINRNEG-PL------VYIHEVIPGGDCYKD 57
Query: 307 GRLKVGMRLLEVNGMSLLGASHQEA 331
GRLK G +L+ +N S++G S +EA
Sbjct: 58 GRLKPGDQLVSINKESMIGVSFEEA 82
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
+ + K LG I+GG + + P ++I ++PGG G+L+ GD+++++N
Sbjct: 19 ITVTKETGLGLKILGGINRN------EGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKE 72
Query: 223 DVSKVTHEEA 232
+ V+ EEA
Sbjct: 73 SMIGVSFEEA 82
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 282 GNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ 341
G ++ D G++I I GGA DGR++ G LL+VN M+ S+ +AV LR H+
Sbjct: 25 GQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK 84
Query: 342 ---ISLTVCK 348
I LTV K
Sbjct: 85 PGPIVLTVAK 94
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG SI+G ++ + GI+I I+ GG A G++ GD +L VN + ++++
Sbjct: 19 LGISIVGQSNE------RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSND 72
Query: 231 EAVLALLEPCPEILLKIQHDPHP 253
+AV +L I H P P
Sbjct: 73 DAV--------RVLRDIVHKPGP 87
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 282 GNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ 341
G ++ D G++I I GGA DGR++ G LL+VN ++ S+ +AV LR H+
Sbjct: 19 GQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLRDIVHK 78
Query: 342 ---ISLTVCK 348
I LTV K
Sbjct: 79 PGPIVLTVAK 88
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG SI+G ++ + GI+I I GG A G++ GD +L VN + +++
Sbjct: 13 LGISIVGQSNE------RGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSND 66
Query: 231 EAVLALLEPCPEILLKIQHDPHP 253
+AV +L I H P P
Sbjct: 67 DAV--------RVLRDIVHKPGP 81
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG SI GG +H +P I IS I PG A G L +GD ILAVNG ++ H+
Sbjct: 23 LGISITGGKEHG-VP-------ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHK 74
Query: 231 EAVLALLEPCPEILLKI 247
EAV L + EI ++
Sbjct: 75 EAVTILSQQRGEIEFEV 91
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
+++ L++++ E LG+ I GG + G P + I++I+ G A R G L VG +
Sbjct: 10 IRKVLLLKEDHEGLGISITGG--KEHGVP-------ILISEIHPGQPADRCGGLHVGDAI 60
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 347
L VNG++L H+EAV L +I V
Sbjct: 61 LAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 92
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 44.7 bits (104), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 282 GNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ 341
G ++ D G++I I GGA DGR++ G LL+VN M+ S+ +AV LR H+
Sbjct: 25 GQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK 84
Query: 342 ---ISLTVCK 348
I LTV K
Sbjct: 85 PGPIVLTVAK 94
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG SI+G ++ + GI+I I+ GG A G++ GD +L VN + ++++
Sbjct: 19 LGISIVGQSNE------RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSND 72
Query: 231 EAVLALLEPCPEILLKIQHDPHP 253
+AV +L I H P P
Sbjct: 73 DAV--------RVLRDIVHKPGP 87
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
Length = 98
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 282 GNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ 341
G ++ D G++I I GGA DGR++ G LL+VN ++ S+ +AV LR H+
Sbjct: 21 GQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLRDIVHK 80
Query: 342 ---ISLTVCK 348
I LTV K
Sbjct: 81 PGPIVLTVAK 90
Score = 37.4 bits (85), Expect = 0.015, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG SI+G ++ + GI+I I GG A G++ GD +L VN + +++
Sbjct: 15 LGISIVGQSNE------RGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSND 68
Query: 231 EAVLALLEPCPEILLKIQHDPHP 253
+AV +L I H P P
Sbjct: 69 DAV--------RVLRDIVHKPGP 83
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 12/87 (13%)
Query: 263 RQEGEKLGMHIKGGLRGQRGNPLDKNDE-GVFITKINSGGAAKRDGRLKVGMRLLEVNGM 321
R GE+LG+ + + + DE GVFI + GG A +DGRL R+L +NG
Sbjct: 12 RDSGEQLGIKL-----------VRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGH 60
Query: 322 SLLGASHQEAVNTLRYSGHQISLTVCK 348
L + + A ++ SG +++LT+ +
Sbjct: 61 DLKYGTPELAAQIIQASGERVNLTIAR 87
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG ++ TD +PG+FI ++ GG+AA G+L DR+LA+NG D+ T E
Sbjct: 18 LGIKLVRRTD---------EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPE 68
Query: 231 EAVLALLEPCPEILLKIQHDPHPE 254
A + + L I PE
Sbjct: 69 LAAQIIQASGERVNLTIARPGKPE 92
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG SI GG +H +P I IS I PG A G L +GD ILAVNG ++ H+
Sbjct: 16 LGISITGGKEHG-VP-------ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHK 67
Query: 231 EAVLALLEPCPEILLKI 247
EAV L + EI ++
Sbjct: 68 EAVTILSQQRGEIEFEV 84
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
+++ L++++ E LG+ I GG + G P + I++I+ G A R G L VG +
Sbjct: 3 IRKVLLLKEDHEGLGISITGG--KEHGVP-------ILISEIHPGQPADRCGGLHVGDAI 53
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
L VNG++L H+EAV L +I V
Sbjct: 54 LAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 84
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 282 GNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ 341
G ++ D G++I I GGA DGR++ G LL+VN ++ S+ +AV LR H+
Sbjct: 21 GQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLRDIVHK 80
Query: 342 ---ISLTVCK 348
I LTV K
Sbjct: 81 PGPIVLTVAK 90
Score = 37.4 bits (85), Expect = 0.017, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG SI+G ++ + GI+I I GG A G++ GD +L VN + +++
Sbjct: 15 LGISIVGQSNE------RGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSND 68
Query: 231 EAVLALLEPCPEILLKIQHDPHP 253
+AV +L I H P P
Sbjct: 69 DAV--------RVLRDIVHKPGP 83
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Query: 167 KSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALS-GKLRMGDRILAVNGRDVS 225
++G GF++ GG D K + +S + PG A L +L GD+++ +NGRD++
Sbjct: 14 ENGRFGFNVKGGYDQ--------KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 65
Query: 226 KVTHEEAVLALLEPC 240
+ TH++ VL + C
Sbjct: 66 EHTHDQVVLFIKASC 80
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG ++ TD + GI+IS I P +AA G++R GDRI+ +NG +V E
Sbjct: 34 LGLTVCYRTDD------EDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NRE 85
Query: 231 EAVLAL 236
EAV L
Sbjct: 86 EAVALL 91
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Query: 286 DKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTL 335
D++D G++I++I+ A +DGR++ G R++++NG+ + + +EAV L
Sbjct: 44 DEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEV--QNREEAVALL 91
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Query: 167 KSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALS-GKLRMGDRILAVNGRDVS 225
++G GF++ GG D K + +S + PG A L +L GD+++ +NGRD++
Sbjct: 25 ENGRFGFNVKGGYDQ--------KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 76
Query: 226 KVTHEEAVLALLEPC 240
+ TH++ VL + C
Sbjct: 77 EHTHDQVVLFIKASC 91
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Kiaa1526 Protein
Length = 103
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 262 IRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGM 321
+++ LG+ I+GG ++ PL + I I GG+A G+LKVG +LEVNG+
Sbjct: 12 VKKSAATLGIAIEGGANTRQ--PLPR------IVTIQRGGSAHNCGQLKVGHVILEVNGL 63
Query: 322 SLLGASHQEAVNTL 335
+L G H+EA +
Sbjct: 64 TLRGKEHREAARII 77
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 2 GGIQTRVPW----TGEQAGVILAAGEVVIHPVGMRLLEVNGMSLLGASHQEAVNTL 53
GG TR P T ++ G G++ VG +LEVNG++L G H+EA +
Sbjct: 25 GGANTRQPLPRIVTIQRGGSAHNCGQL---KVGHVILEVNGLTLRGKEHREAARII 77
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 13/98 (13%)
Query: 159 FLQDVVLPKSGP---LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDR 215
FL +V K P LGF+I GG GIFIS ++P A +G L+ GD+
Sbjct: 14 FLPRIVTLKKPPGAQLGFNIRGGKASQL--------GIFISKVIPDSDAHRAG-LQEGDQ 64
Query: 216 ILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
+LAVN D + H +AV +L+ EI ++++ P
Sbjct: 65 VLAVNDVDFQDIEHSKAV-EILKTAREISMRVRFFSGP 101
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
+TL + G +LG +I+GG Q G+FI+K+ A R G L+ G ++L V
Sbjct: 19 VTLKKPPGAQLGFNIRGGKASQL---------GIFISKVIPDSDAHRAG-LQEGDQVLAV 68
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTV 346
N + H +AV L+ + +IS+ V
Sbjct: 69 NDVDFQDIEHSKAVEILK-TAREISMRV 95
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Query: 167 KSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALS-GKLRMGDRILAVNGRDVS 225
++G GF++ GG D K + +S + PG A L +L GD+++ +NGRD++
Sbjct: 27 ENGRFGFNVKGGYDQ--------KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 78
Query: 226 KVTHEEAVLALLEPC 240
+ TH++ VL + C
Sbjct: 79 EHTHDQVVLFIKASC 93
>pdb|2DB5|A Chain A, Solution Structure Of The First Pdz Domain Of Inad-Like
Protein
Length = 128
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 162 DVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
D+ P +G LGFS++ + K IF+ + PG VA +L+ D+ILA+N
Sbjct: 30 DIERPSTGGLGFSVVALRSQNL-----GKVDIFVKDVQPGSVADRDQRLKENDQILAINH 84
Query: 222 RDVSK-VTHEEAVLALLEPCPEILLKIQHDP 251
+ + ++H++A+ L + + L + +P
Sbjct: 85 TPLDQNISHQQAIALLQQTTGSLRLIVAREP 115
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 292 VFITKINSGGAAKRDGRLKVGMRLLEVNGMSL-LGASHQEAVNTLRYSGHQISLTVCKGF 350
+F+ + G A RD RLK ++L +N L SHQ+A+ L+ + + L V
Sbjct: 56 IFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVA--- 112
Query: 351 ERGDIERRASTS 362
R + ++STS
Sbjct: 113 -REPVHTKSSTS 123
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 262 IRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGM 321
+++ G LG+ I G P D + I+ + GG A+R G + +G R+L +N
Sbjct: 11 LKRYGGPLGITISG-----TEEPFDP----IIISSLTKGGLAERTGAIHIGDRILAINSS 61
Query: 322 SLLGASHQEAVNTLRYSGHQISLTVCK 348
SL G EA++ L+ +G ++L + K
Sbjct: 62 SLKGKPLSEAIHLLQMAGETVTLKIKK 88
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 169 GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVT 228
GPLG +I GT+ P I IS + GG+A +G + +GDRILA+N +
Sbjct: 16 GPLGITI-SGTEEPFDP-------IIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKP 67
Query: 229 HEEAVLALLEPCPEILLKI--QHDPHP 253
EA+ L + LKI Q D P
Sbjct: 68 LSEAIHLLQMAGETVTLKIKKQTDAQP 94
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 26 IHPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
IH +G R+L +N SL G EA++ L+ +G ++L + K
Sbjct: 49 IH-IGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKK 88
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 13/76 (17%)
Query: 161 QDVVL-PKSGPLGFSIIGGTDHSCIPFGQHKPG--IFISHIVPGGVAALSGKLRMGDRIL 217
QD+ L K GF I+GG + PG I+I HIVP G A G+LR GD ++
Sbjct: 4 QDIFLWRKETGFGFRILGGNE----------PGEPIYIGHIVPLGAADTDGRLRSGDELI 53
Query: 218 AVNGRDVSKVTHEEAV 233
+V+G V +H+ V
Sbjct: 54 SVDGTPVIGKSHQLVV 69
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
Q+I L R+E G I GG ++ E ++I I GAA DGRL+ G L+
Sbjct: 4 QDIFLWRKE-TGFGFRILGG---------NEPGEPIYIGHIVPLGAADTDGRLRSGDELI 53
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQ--ISLTV 346
V+G ++G SHQ V ++ + Q ++LTV
Sbjct: 54 SVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTV 85
>pdb|1V5L|A Chain A, Solution Structure Of Pdz Domain Of Mouse Alpha-Actinin-2
Associated Lim Protein
Length = 103
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 162 DVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
+VVLP P GF + GG D F Q + I+ I PG AA + L GD ILA++G
Sbjct: 8 NVVLPGPAPWGFRLSGGID-----FNQP---LVITRITPGSKAA-AANLCPGDVILAIDG 58
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQH 249
+TH +A + ++ LKI
Sbjct: 59 FGTESMTHADAQDRIKAASYQLCLKIDR 86
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
Query: 256 FQEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMR 314
F T+ ++G K G I+GG R +D +++ ++ G A R+GR++VG +
Sbjct: 10 FDYFTVDMEKGAKGFGFSIRGG----REYKMD-----LYVLRLAEDGPAIRNGRMRVGDQ 60
Query: 315 LLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
++E+NG S +H A+ ++ G ++ L + +G
Sbjct: 61 IIEINGESTRDMTHARAIELIKSGGRRVRLLLKRG 95
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
GFSI GG ++K +++ + G A +G++R+GD+I+ +NG +TH
Sbjct: 24 FGFSIRGGR--------EYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHA 75
Query: 231 EAV 233
A+
Sbjct: 76 RAI 78
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 22/160 (13%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPE-ILLKIQHD 250
GIF+ + A+L G LR GD++L +NG + + + ++A L + E I + I+
Sbjct: 28 GIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDR 86
Query: 251 PHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLK 310
P + IT+ + +G K G IT I +A R+G L
Sbjct: 87 PFE---RTITMHKDSTGHVGFIFKNGK----------------ITSIVKDSSAARNGLL- 126
Query: 311 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGF 350
+ E+NG +++G + + L SG +++T+ F
Sbjct: 127 TEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAF 166
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 167 KSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSK 226
+ GP G+ +D S +PG +I + PG AA SG LR DR++ VNG++V
Sbjct: 11 RKGPQGYGFNLHSDKS-------RPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEG 62
Query: 227 VTHEEAVLAL 236
+ H E V ++
Sbjct: 63 LRHAEVVASI 72
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 286 DKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLT 345
DK+ G +I ++ G A R G L+ RL+EVNG ++ G H E V +++ + L
Sbjct: 24 DKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 82
Query: 346 V 346
V
Sbjct: 83 V 83
>pdb|2Q3G|A Chain A, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
pdb|2Q3G|B Chain B, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
Length = 89
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
VVL P GF + GG D + +P IS + PGG AA +G + +GD +L+++G
Sbjct: 7 VVLEGPAPWGFRLQGGKDFN-VPLS-------ISRLTPGGKAAQAG-VAVGDWVLSIDGE 57
Query: 223 DVSKVTHEEA 232
+ +TH EA
Sbjct: 58 NAGSLTHIEA 67
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
FQ + E E+ LRG R +D +++ ++ G A+R G++++G +
Sbjct: 20 FQSMDFYTVELERGAKGFGFSLRGGREYNMD-----LYVLRLAEDGPAERSGKMRIGDEI 74
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
LE+NG + H A+ ++ G ++ L + +G
Sbjct: 75 LEINGETTKNMKHSRAIELIKNGGRRVRLFLKRG 108
Score = 37.0 bits (84), Expect = 0.023, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
GFS+ GG +++ +++ + G A SGK+R+GD IL +NG + H
Sbjct: 37 FGFSLRGGREYNM--------DLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHS 88
Query: 231 EAV 233
A+
Sbjct: 89 RAI 91
>pdb|2EDP|A Chain A, Solution Structure Of The Pdz Domain From Human Shroom
Family Member 4
Length = 100
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V L P GF++ GG +H C P + +S I GG AALS K+R GD ++ +NG
Sbjct: 15 VQLQGGAPWGFTLKGGLEH-CEP-------LTVSKIEDGGKAALSQKMRTGDELVNINGT 66
Query: 223 DVSKVTHEEAVL 234
+ E +L
Sbjct: 67 PLYGSRQEALIL 78
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
FQ + + Q G G +KGGL ++ E + ++KI GG A +++ G L
Sbjct: 10 FQYVPVQLQGGAPWGFTLKGGL---------EHCEPLTVSKIEDGGKAALSQKMRTGDEL 60
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
+ +NG L G S QEA+ ++ S + L V
Sbjct: 61 VNINGTPLYG-SRQEALILIKGSFRILKLIV 90
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex
With An Elks1b C-Terminal Peptide
Length = 114
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+ T+ ++ G LG+ + GG D G FITK+ G A G L+ G +L
Sbjct: 27 KRTTMPKESGALLGLKVVGG------KMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVL 80
Query: 317 EVNGMSLLGASHQEAVNTLRYS 338
E NG L GA+++E N + S
Sbjct: 81 EWNGKPLPGATNEEVYNIILES 102
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 171 LGFSIIGG--TDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVT 228
LG ++GG TD + G FI+ + G +A + G LR GD +L NG+ + T
Sbjct: 39 LGLKVVGGKMTDLGRL-------GAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGAT 91
Query: 229 HEEAVLALLE 238
+EE +LE
Sbjct: 92 NEEVYNIILE 101
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 258 EITLIRQEGEKLGMHIKGGL-RGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
++ + R+E E G I L R + G+ + + I +I G A R +LKVG R+L
Sbjct: 13 DVVIHRKENEGFGFVIISSLNRPESGSTITVPHK---IGRIIDGSPADRCAKLKVGDRIL 69
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
VNG S++ H + V ++ +G ++L +
Sbjct: 70 AVNGQSIINMPHADIVKLIKDAGLSVTLRI 99
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 195 ISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKI 247
I I+ G A KL++GDRILAVNG+ + + H + V + + + L+I
Sbjct: 47 IGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRI 99
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
VG R+L VNG S++ H + V ++ +G ++L +
Sbjct: 64 VGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRI 99
>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain
Length = 85
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V L GP GF + GG D + +P + IS I PG AA S +L GD ++A++G
Sbjct: 5 VTLTGPGPWGFRLQGGKDFN-MP-------LTISRITPGSKAAQS-QLSQGDLVVAIDGV 55
Query: 223 DVSKVTHEEA 232
+ +TH EA
Sbjct: 56 NTDTMTHLEA 65
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 266 GEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLG 325
G LG+ I GG + P + G +I KI GG+A++ G+L GM++LE NG+ L
Sbjct: 29 GNGLGIRIVGG----KEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTS 84
Query: 326 ASHQE 330
+++E
Sbjct: 85 KTYEE 89
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG I+GG + IP + G +I+ I+PGG A +GKL G ++L NG ++ T+E
Sbjct: 32 LGIRIVGGKE---IPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYE 88
Query: 231 E 231
E
Sbjct: 89 E 89
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 294 ITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 347
++ + GGAA R G ++ G R+LEVNG+++ GA+H++ V+ +R ++ LTV
Sbjct: 47 VSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 189 HKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKI 247
+ P +S ++PGG A +G +R GDRIL VNG +V TH++ V + E++L +
Sbjct: 41 YAPLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 65
G R+LEVNG+++ GA+H++ V+ +R ++ LTV
Sbjct: 64 GDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein
Length = 90
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V L GP GF + GG D + +P + IS I PG AA S +L GD ++A++G
Sbjct: 12 VTLTGPGPWGFRLQGGKDFN-MP-------LTISRITPGSKAAQS-QLSQGDLVVAIDGV 62
Query: 223 DVSKVTHEEA 232
+ +TH EA
Sbjct: 63 NTDTMTHLEA 72
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 294 ITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 347
++ + GGAA R G ++ G R+LEVNG+++ GA+H++ V+ +R ++ LTV
Sbjct: 47 VSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 189 HKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKI 247
+ P +S ++PGG A +G +R GDRIL VNG +V TH++ V + E++L +
Sbjct: 41 YAPLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 65
G R+LEVNG+++ GA+H++ V+ +R ++ LTV
Sbjct: 64 GDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 294 ITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 347
++ + GGAA R G ++ G R+LEVNG+++ GA+H++ V+ +R ++ LTV
Sbjct: 47 VSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 189 HKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKI 247
+ P +S ++PGG A +G +R GDRIL VNG +V TH++ V + E++L +
Sbjct: 41 YAPLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 65
G R+LEVNG+++ GA+H++ V+ +R ++ LTV
Sbjct: 64 GDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+E L +QEG+ G ++ ++K+ +G I I G A++ G L G R+L
Sbjct: 15 RECKLSKQEGQNYGFFLR----------IEKDTDGHLIRVIEEGSPAEKAGLLD-GDRVL 63
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
+NG+ + H + V +R SG+ ++L V G
Sbjct: 64 RINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 96
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
G R+L +NG+ + H + V +R SG+ ++L V G
Sbjct: 59 GDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 96
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+ T+ + G LG+ + GG D G FITK+ G A G L+ G +L
Sbjct: 27 KRTTMPKDSGALLGLKVVGG------KMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVL 80
Query: 317 EVNGMSLLGASHQEAVNTLRYS 338
E NG L GA+++E N + S
Sbjct: 81 EWNGKPLPGATNEEVYNIILES 102
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 171 LGFSIIGG--TDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVT 228
LG ++GG TD + G FI+ + G +A + G LR GD +L NG+ + T
Sbjct: 39 LGLKVVGGKMTDLGRL-------GAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGAT 91
Query: 229 HEEAVLALL----EPCPEILLKIQHDP 251
+EE +L EP EI++ P
Sbjct: 92 NEEVYNIILESKSEPQVEIIVSRPSGP 118
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGFS+ GG D I + + P G+A+ G ++ G+ +L++NG+ + TH
Sbjct: 29 LGFSLAGGAD-------LENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHH 81
Query: 231 EAVLALLEPCPE 242
+A LA+L E
Sbjct: 82 DA-LAILRQARE 92
>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And
Claudins Upon Binding To The 1st Pdz Domain Of Zonula
Occludens 1
Length = 100
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNP-LDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+TL R G G+ I GG R NP + + I+ + GG A +G+L+ R+
Sbjct: 14 VTLHRAPGFGFGIAISGG----RDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAM 67
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTV 346
VNG+S+ H AV LR SG +T+
Sbjct: 68 VNGVSMDNVEHAFAVQQLRKSGKNAKITI 96
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 155 SSSLFLQDVVLPKSGP---LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLR 211
S ++ Q V P G +I GG D+ G+ I IS ++ GG A G+L+
Sbjct: 5 SDHIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGE--TSIVISDVLKGGPA--EGQLQ 60
Query: 212 MGDRILAVNGRDVSKVTHEEAVLAL 236
DR+ VNG + V H AV L
Sbjct: 61 ENDRVAMVNGVSMDNVEHAFAVQQL 85
>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived
Ligand (Wrrttwv)
Length = 107
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNP-LDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+TL R G G+ I GG R NP + + I+ + GG A +G+L+ R+
Sbjct: 11 VTLHRAPGFGFGIAISGG----RDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAM 64
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRAS 360
VNG+S+ H AV LR SG +T+ + ++G RR +
Sbjct: 65 VNGVSMDNVEHAFAVQQLRKSGKNAKITIRR--KKGGGWRRTT 105
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 155 SSSLFLQDVVLPKSGP---LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLR 211
S ++ Q V P G +I GG D+ G+ I IS ++ GG A G+L+
Sbjct: 2 SHMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGE--TSIVISDVLKGGPA--EGQLQ 57
Query: 212 MGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQ 248
DR+ VNG + V H AV L + + I+
Sbjct: 58 ENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIR 94
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 255 GFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMR 314
G +E L +QEG+ G ++ ++K+ +G I I G A++ G L G R
Sbjct: 1 GPRESKLSKQEGQNYGFFLR----------IEKDTDGHLIRVIEEGSPAEKAGLLD-GDR 49
Query: 315 LLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
+L +NG+ + H + V +R SG+ ++L V G
Sbjct: 50 VLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 84
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
G R+L +NG+ + H + V +R SG+ ++L V G
Sbjct: 47 GDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 84
>pdb|2H3M|A Chain A, Crystal Structure Of Zo-1 Pdz1
Length = 97
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNP-LDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+TL R G G+ I GG R NP + + I+ + GG A +G+L+ R+
Sbjct: 11 VTLHRAPGFGFGIAISGG----RDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAM 64
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTV 346
VNG+S+ H AV LR SG +T+
Sbjct: 65 VNGVSMDNVEHAFAVQQLRKSGKNAKITI 93
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
G +I GG D+ G+ I IS ++ GG A G+L+ DR+ VNG + V H
Sbjct: 21 FGIAISGGRDNPHFQSGE--TSIVISDVLKGGPA--EGQLQENDRVAMVNGVSMDNVEHA 76
Query: 231 EAVLAL 236
AV L
Sbjct: 77 FAVQQL 82
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 15/74 (20%)
Query: 190 KPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQH 249
KP + IS ++ GG A SG ++ GD ILAVN R + ++++ A+ E+L I
Sbjct: 25 KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSAL--------EVLRGIAS 76
Query: 250 DPH-------PEGF 256
+ H PEGF
Sbjct: 77 ETHVVLILRGPEGF 90
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 15/74 (20%)
Query: 190 KPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQH 249
KP + IS ++ GG A SG ++ GD ILAVN R + ++++ A+ E+L I
Sbjct: 27 KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSAL--------EVLRGIAS 78
Query: 250 DPH-------PEGF 256
+ H PEGF
Sbjct: 79 ETHVVLILRGPEGF 92
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V K +G + GG D GIF++ ++ AA G L GD+IL VN
Sbjct: 5 VKFRKGDSVGLRLAGGND----------VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNV 53
Query: 223 DVSKVTHEEAVLALLE 238
D + + EEAVL LL+
Sbjct: 54 DFTNIIREEAVLFLLD 69
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+E L +QEG+ G ++ ++K+ +G I I G A++ G L G R+L
Sbjct: 4 RESKLSKQEGQNYGFFLR----------IEKDTDGHLIRVIEEGSPAEKAGLLD-GDRVL 52
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
+NG+ + H + V +R SG+ ++L V G
Sbjct: 53 RINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 85
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
G R+L +NG+ + H + V +R SG+ ++L V G
Sbjct: 48 GDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 85
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 290 EGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQIS-LTVCK 348
+GV++T I G A R G L L+EVNG ++ ASH+E V ++ SG ++ L V K
Sbjct: 32 KGVYMTDITPQGVAMRAGVL-ADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDK 90
Query: 349 GFERGDIERRASTSEG 364
++ +E+++ S G
Sbjct: 91 ETDKRHVEQKSGPSSG 106
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 188 QHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAV 233
Q K G++++ I P GVA +G L D ++ VNG +V +HEE V
Sbjct: 29 QGKKGVYMTDITPQGVAMRAGVL-ADDHLIEVNGENVEDASHEEVV 73
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 33 LLEVNGMSLLGASHQEAVNTLRYSGHQIS-LTVCKGFERGDIERRASTSEG 82
L+EVNG ++ ASH+E V ++ SG ++ L V K ++ +E+++ S G
Sbjct: 56 LIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDKRHVEQKSGPSSG 106
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
Length = 111
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
+G SI GG Q+ PG++I + AAL G + GD I VNGR + T
Sbjct: 19 IGISIGGG--------AQYCPGLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKV 70
Query: 231 EAVLALLEPCPEILL---KIQHDP 251
E + E E+ + K+Q DP
Sbjct: 71 EVAKMIQEVKGEVTIHYNKLQADP 94
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 260 TLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVN 319
T +R+ G + GG D+ DE + I + G A DG+++ G ++ VN
Sbjct: 22 TKLRKSSRGFGFTVVGG---------DEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVN 72
Query: 320 GMSLLGASHQEAVNTLRY--SGHQISLTVCKGFERGDIERRASTSEGSRSVTQSMSSLDR 377
+LG +H + V + G + L +C+G+ + + S+ S++ LD+
Sbjct: 73 DTCVLGHTHAQVVKIFQSIPIGASVDLELCRGY-----PLPFDPDDPNTSLVTSVAILDK 127
Query: 378 E 378
E
Sbjct: 128 E 128
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIF--ISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVT 228
GF+++GG +P F I +V G AAL GK+ GD I++VN V T
Sbjct: 31 FGFTVVGG----------DEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHT 80
Query: 229 HEEAV 233
H + V
Sbjct: 81 HAQVV 85
>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived
Ligand (wrrttyl)
Length = 107
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNP-LDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+TL R G G+ I GG R NP + + I+ + GG A +G+L+ R+
Sbjct: 11 VTLHRAPGFGFGIAISGG----RDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAM 64
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRAS 360
VNG+S+ H AV LR SG +T+ + ++G RR +
Sbjct: 65 VNGVSMDNVEHAFAVQQLRKSGKNAKITIRR--KKGGGWRRTT 105
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 155 SSSLFLQDVVLPKSGP---LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLR 211
S ++ Q V P G +I GG D+ G+ I IS ++ GG A G+L+
Sbjct: 2 SHMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGE--TSIVISDVLKGGPA--EGQLQ 57
Query: 212 MGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQ 248
DR+ VNG + V H AV L + + I+
Sbjct: 58 ENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIR 94
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 260 TLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVN 319
T +++ G I GG D+ DE + + + G A +DG+++ G ++ +N
Sbjct: 23 TTLKKSNMGFGFTIIGG---------DEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYIN 73
Query: 320 GMSLLGASHQEAVNTLRYS--GHQISLTVCKGF 350
+ +LG +H + V + G ++L +C+G+
Sbjct: 74 EVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGY 106
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIF--ISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVT 228
GF+IIGG +P F + ++P G AA GK+ GD I+ +N V T
Sbjct: 32 FGFTIIGG----------DEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHT 81
Query: 229 HEEAVLALLEPCP 241
H + V+ L + P
Sbjct: 82 HAD-VVKLFQSVP 93
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated Peptide
Length = 127
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 15/74 (20%)
Query: 190 KPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQH 249
KP + IS ++ GG A SG ++ GD ILAVN R + ++++ A+ E+L I
Sbjct: 32 KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSAL--------EVLRGIAS 83
Query: 250 DPH-------PEGF 256
+ H PEGF
Sbjct: 84 ETHVVLILRGPEGF 97
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V K +G + GG D GIF++ ++ AA G L GD+IL VN
Sbjct: 13 VKFRKGDSVGLRLAGGND----------VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNV 61
Query: 223 DVSKVTHEEAVLALLE 238
D + + EEAVL LL+
Sbjct: 62 DFTNIIREEAVLFLLD 77
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 20/159 (12%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
GIF+ + A+L G LR GD++L +NG + + + ++A L + E + D
Sbjct: 28 GIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITXTIRDR 86
Query: 252 HPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKV 311
E + IT + +G K G IT I +A R+G L
Sbjct: 87 PFE--RTITXHKDSTGHVGFIFKNGK----------------ITSIVKDSSAARNGLL-T 127
Query: 312 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGF 350
+ E+NG +++G + + L SG +++T+ F
Sbjct: 128 EHNICEINGQNVIGLKDSQIADILSTSGTVVTITIXPAF 166
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 301 GAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
G A+R GRL+VG +L +NG S G +H +AV +R G Q+ L +
Sbjct: 49 GPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVI 94
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 202 GVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQ 248
G A G+L +GD +L +NG +TH +AV + P++ L I+
Sbjct: 49 GPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIR 95
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 293 FITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 347
++ ++ GG A R G L++G L+EVNG +++ H++ VN +R G+ + + V
Sbjct: 68 YLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 121
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 194 FISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKI 247
++ + GGVA +G LRMGD ++ VNG++V KV H + V + + +++K+
Sbjct: 68 YLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 120
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 33 LLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 65
L+EVNG +++ H++ VN +R G+ + + V
Sbjct: 89 LIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 121
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 12/97 (12%)
Query: 255 GFQEITL-IRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGM 313
G++E+ + +R+ G I GG D+ + + I + + G+A RDGRL G
Sbjct: 7 GYKELDVHLRRMESGFGFRILGG---------DEPGQPILIGAVIAMGSADRDGRLHPGD 57
Query: 314 RLLEVNGMSLLGASHQEAVNTLRYSGH--QISLTVCK 348
L+ V+G+ + G +H+ ++ + ++ Q++LTV +
Sbjct: 58 ELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRR 94
>pdb|3R0H|A Chain A, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|B Chain B, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|C Chain C, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|D Chain D, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|E Chain E, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|F Chain F, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|G Chain G, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|H Chain H, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
Length = 206
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 77/193 (39%), Gaps = 42/193 (21%)
Query: 170 PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVS---- 225
P+G + GG ++ G I+H+ P G A +L++ D I +NG +
Sbjct: 30 PMGVIVCGGKNNHVTT------GCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSM 83
Query: 226 ---------KVTHEEAV-LALLEPCPEILLKIQHDPHPEGFQEITLIRQEGEKLGMHIKG 275
T+E+AV L + P L K D L+++ G++LG+
Sbjct: 84 TTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVD----------LMKKAGKELGLS--- 130
Query: 276 GLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTL 335
L N+ G I + G + D +L+ G + + NG +L G Q
Sbjct: 131 ---------LSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALF 181
Query: 336 RYSGHQISLTVCK 348
+ + ++S+ V +
Sbjct: 182 KGANGKVSMEVTR 194
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V K +G + GG D GIF++ ++ AA G L GD+IL VN
Sbjct: 6 VKFRKGDSVGLRLAGGND----------VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNV 54
Query: 223 DVSKVTHEEAVLALLE 238
D + + EEAVL LL+
Sbjct: 55 DFTNIIREEAVLFLLD 70
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 165 LPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDV 224
+ K G L ++ GG D P G+ + +S + GG A G + GD I+A+NG+ V
Sbjct: 24 IKKEGSLDLALEGGVDS---PVGK----VVVSAVYEGGAAERHGGVVKGDEIMAINGKIV 76
Query: 225 SKVTHEEAVLAL 236
+ T EA AL
Sbjct: 77 TDYTLAEAEAAL 88
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LG SI G D S GI++ ++PG AAL G++ D+IL V+ +V +
Sbjct: 27 LGISISGMRDQSTT---GEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQS 83
Query: 231 EAVLAL 236
+ V L
Sbjct: 84 DVVEVL 89
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 259 ITLIRQ-EGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+ L R+ + LG+ I G R G+++ + G AA DGR++ ++L
Sbjct: 16 VELFREKDTSSLGISISG----MRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILR 71
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQI 342
V+ +++ G + + V LR +G+ +
Sbjct: 72 VDDVNVQGMAQSDVVEVLRNAGNPV 96
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
+G SI GG Q+ P ++I + AAL G + GD I VNGR + T
Sbjct: 33 IGISIGGG--------AQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKV 84
Query: 231 EAVLALLEPCPEILL---KIQHDP 251
E + E E+ + K+Q DP
Sbjct: 85 EVAKMIQEVKGEVTIHYNKLQADP 108
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 167 KSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSK 226
K +G + GG D GIF++ ++ AA G L GD+IL VN D +
Sbjct: 37 KGDSVGLRLAGGND----------VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTN 85
Query: 227 VTHEEAVLALLE 238
+ EEAVL LL+
Sbjct: 86 IIREEAVLFLLD 97
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 293 FITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
++ ++ GG A R G L++G L+EVNG +++ H++ VN +R G+ + + V
Sbjct: 48 YLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 100
Score = 35.4 bits (80), Expect = 0.060, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 194 FISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKI 247
++ + GGVA +G LRMGD ++ VNG++V KV H + V + + +++K+
Sbjct: 48 YLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 100
Score = 28.5 bits (62), Expect = 7.6, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
+G L+EVNG +++ H++ VN +R G+ + + V
Sbjct: 65 MGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 100
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 293 FITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
++ ++ GG A R G L++G L+EVNG +++ H++ VN +R G+ + + V
Sbjct: 48 YLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 100
Score = 35.4 bits (80), Expect = 0.060, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 194 FISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKI 247
++ + GGVA +G LRMGD ++ VNG++V KV H + V + + +++K+
Sbjct: 48 YLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 100
Score = 28.5 bits (62), Expect = 7.6, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
+G L+EVNG +++ H++ VN +R G+ + + V
Sbjct: 65 MGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 100
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
++ ++ R G LG+ + GG + G FITK+ G A G L+ G +
Sbjct: 37 LKDGSVPRDSGAMLGLKVVGGKMTESGRLC------AFITKVKKGSLADTVGHLRPGDEV 90
Query: 316 LEVNGMSLLGASHQEAVNTLRYSG--HQISLTVCK 348
LE NG L GA+ +E N + S Q+ L V +
Sbjct: 91 LEWNGRLLQGATFEEVYNIILESKPEPQVELVVSR 125
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 194 FISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPE 242
FI+ + G +A G LR GD +L NGR + T EE +LE PE
Sbjct: 68 FITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPE 116
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
G F+ +++ G AK+ G ++ G RL+ V G S+ G H+E V+ ++ G +SLTV
Sbjct: 31 GQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTV 85
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 190 KPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAV 233
+PG F+ + PG A +G ++ GDR++AV G V + HEE V
Sbjct: 29 RPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETV 71
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G RL+ V G S+ G H+E V+ ++ G +SLTV
Sbjct: 50 AGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTV 85
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 287 KNDE---GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQIS 343
K DE + + +I GGAA R G + VG L EVNG+ + +E + L S I+
Sbjct: 22 KKDEQTGAIIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAIT 81
Query: 344 LTVCKG 349
+ G
Sbjct: 82 FKIIPG 87
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 193 IFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKI 247
I ++ I GG A SG + +GD + VNG V EE + L + I KI
Sbjct: 30 IIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKI 84
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 37.4 bits (85), Expect = 0.016, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 167 KSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSK 226
K +G + GG D GIF++ ++ AA G L GD+IL VN D +
Sbjct: 12 KGDSVGLRLAGGND----------VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTN 60
Query: 227 VTHEEAVLALLE 238
+ EEAVL LL+
Sbjct: 61 IIREEAVLFLLD 72
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 268 KLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGAS 327
+LG ++GG ++ G+F++K+ G +A+R G L VG ++ EVNG+SL +
Sbjct: 23 RLGFSVRGG---------SEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTT 72
Query: 328 HQEAVNTLRYS 338
AV L S
Sbjct: 73 MGSAVKVLTSS 83
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 168 SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKV 227
+G LGFS+ GG++H GIF+S + G A +G L +GD+I VNG +
Sbjct: 21 AGRLGFSVRGGSEHGL--------GIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLEST 71
Query: 228 THEEAVLAL 236
T AV L
Sbjct: 72 TMGSAVKVL 80
>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse
Tjp2
Length = 117
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDE-GVFITKINSGGAAKRDGRLKVGMR 314
+++ T+ Q+ K G I + G R NP +N E + I+ + GG A DG L+ R
Sbjct: 13 WEQYTVTLQKDSKRGFGI--AVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQENDR 68
Query: 315 LLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
++ VNG + H AV LR SG ++ V +
Sbjct: 69 VVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKR 102
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
G ++ GG D+ G+ I IS ++PGG A G L+ DR++ VNG + V H
Sbjct: 28 FGIAVSGGRDNPHFENGETS--IVISDVLPGGPA--DGLLQENDRVVMVNGTPMEDVLHS 83
Query: 231 EAVLAL 236
AV L
Sbjct: 84 FAVQQL 89
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 25/31 (80%)
Query: 191 PGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
P + +++++ GG AA SGKL +GD+I+++NG
Sbjct: 216 PTVILANMMNGGPAARSGKLSIGDQIMSING 246
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 249 HDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGR 308
H + E +E+ L + +GE LG+ + + L V + + +GG A R G+
Sbjct: 185 HFSNSENCKELQLEKHKGEILGVVVV------ESSILPT----VILANMMNGGPAARSGK 234
Query: 309 LKVGMRLLEVNGMSLLG 325
L +G +++ +NG SL+G
Sbjct: 235 LSIGDQIMSINGTSLVG 251
>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim Domain
2
Length = 94
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 156 SSLFLQDVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDR 215
SS DV P P GF I GG D H P I ++ + G A + LR GD
Sbjct: 5 SSGLTVDVAGP--APWGFRISGGRDF-------HTP-IIVTKVTERGKAE-AADLRPGDI 53
Query: 216 ILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
I+A+NG+ + H EA + + + L++ P
Sbjct: 54 IVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSGP 91
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
Q +I+++ G+ + G D VF+ + GAA R G ++ G R++
Sbjct: 8 QRCVIIQKDDNGFGLTVSG-------------DNPVFVQSVKEDGAAMRAG-VQTGDRII 53
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
+VNG + ++H E V ++ SG ++LTV
Sbjct: 54 KVNGTLVTHSNHLEVVKLIK-SGSYVALTV 82
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 193 IFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
+F+ + G AA+ ++ GDRI+ VNG V+ H E V+ L++ + L +Q P
Sbjct: 30 VFVQSVKEDG-AAMRAGVQTGDRIIKVNGTLVTHSNHLE-VVKLIKSGSYVALTVQGRP 86
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 254 EGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGM 313
+ +E+ L ++ GE LG+ + + G+ L I + GG A+R G L +G
Sbjct: 8 DNCREVHLEKRRGEGLGVAL---VESGWGSLLPT----AVIANLLHGGPAERSGALSIGD 60
Query: 314 RLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
RL +NG SL+G +R + Q S+T+
Sbjct: 61 RLTAINGTSLVGLPLAACQAAVRETKSQTSVTL 93
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 186 FGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
+G P I++++ GG A SG L +GDR+ A+NG
Sbjct: 32 WGSLLPTAVIANLLHGGPAERSGALSIGDRLTAING 67
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
Length = 91
Score = 35.8 bits (81), Expect = 0.053, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 347
G FI ++ GG A G L+ ++EVNG+++L +++ V+ ++ SG ++L VC
Sbjct: 28 GSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVC 83
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 24/33 (72%)
Query: 33 LLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 65
++EVNG+++L +++ V+ ++ SG ++L VC
Sbjct: 51 IIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVC 83
Score = 28.1 bits (61), Expect = 9.2, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 191 PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAV 233
PG FI + GG A L+G L D I+ VNG +V +E+ V
Sbjct: 27 PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVV 68
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 347
G FI ++ GG A G L+ ++EVNG+++L +++ V+ ++ SG ++L VC
Sbjct: 32 GSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVC 87
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 24/33 (72%)
Query: 33 LLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 65
++EVNG+++L +++ V+ ++ SG ++L VC
Sbjct: 55 IIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVC 87
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 35.4 bits (80), Expect = 0.062, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 347
G FI ++ GG A G L+ ++EVNG+++L +++ V+ ++ SG ++L VC
Sbjct: 28 GSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVC 83
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 24/33 (72%)
Query: 33 LLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 65
++EVNG+++L +++ V+ ++ SG ++L VC
Sbjct: 51 IIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVC 83
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 167 KSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSK 226
K GP G+ +D S KPG FI + P A SG LR DRI+ VNG +
Sbjct: 16 KKGPSGYGFNLHSDKS-------KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEG 67
Query: 227 VTHEEAVLAL 236
H + V A+
Sbjct: 68 KQHGDVVSAI 77
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Query: 255 GFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMR 314
G Q +I+++ G + G D V + + GGAA + G +K G R
Sbjct: 7 GVQRCVIIQKDQHGFGFTVSG-------------DRIVLVQSVRPGGAAMKAG-VKEGDR 52
Query: 315 LLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
+++VNG + +SH E V ++ SG ++LT+
Sbjct: 53 IIKVNGTMVTNSSHLEVVKLIK-SGAYVALTL 83
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 193 IFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAV 233
+ + + PGG AA+ ++ GDRI+ VNG V+ +H E V
Sbjct: 31 VLVQSVRPGG-AAMKAGVKEGDRIIKVNGTMVTNSSHLEVV 70
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
F+++ + +Q+GE LG+ I + G+ L V I + GG A++ G+L +G ++
Sbjct: 2 FKDVFIEKQKGEILGVVI---VESGWGSILPT----VIIANMMHGGPAEKSGKLNIGDQI 54
Query: 316 LEVNGMSLLG 325
+ +NG SL+G
Sbjct: 55 MSINGTSLVG 64
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 186 FGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
+G P + I++++ GG A SGKL +GD+I+++NG
Sbjct: 24 WGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSING 59
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 283 NPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLR-YSGHQ 341
+PLD + I + + G A+R G L G RL+ VN L S EAV L+
Sbjct: 37 DPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGL 96
Query: 342 ISLTVCKGFERG 353
+ L +C G G
Sbjct: 97 VHLGICSGPSSG 108
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
LGFSI+ D P + I I +V GVA SG L GDR+++VN + +
Sbjct: 28 LGFSILDYQD----PLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLA 83
Query: 231 EAV 233
EAV
Sbjct: 84 EAV 86
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid Beta
A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 186 FGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDV 224
+G P + I++++ GG A SGKL +GD+I+++NG +
Sbjct: 28 WGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSL 66
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 263 RQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMS 322
+Q+GE LG+ I + G+ L V I + GG A++ G+L +G +++ +NG S
Sbjct: 13 KQKGEILGVVI---VESGWGSILPT----VIIANMMHGGPAEKSGKLNIGDQIMSINGTS 65
Query: 323 LLG 325
L+G
Sbjct: 66 LVG 68
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 190 KPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAV 233
K G +I + PG A +G L GDR++ VNG +V K TH++ V
Sbjct: 25 KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVV 67
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 286 DKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLT 345
+K G +I + G A++ G L G RL+EVNG ++ +HQ+ V+ +R + + + L
Sbjct: 22 EKGKLGQYIRLVEPGSPAEKAGLL-AGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL 80
Query: 346 V 346
V
Sbjct: 81 V 81
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 167 KSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSK 226
K GP G+ +D S KPG FI + P A SG LR DRI+ VNG +
Sbjct: 16 KKGPSGYGFNLHSDKS-------KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEG 67
Query: 227 VTHEEAVLAL 236
H + V A+
Sbjct: 68 KQHGDVVSAI 77
>pdb|2YUB|A Chain A, Solution Structure Of The Pdz Domain From Mouse Lim Domain
Kinase
Length = 118
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 197 HIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGF 256
HI P A+ GDRIL +NG V + EE A+ + + L I+HDP P+
Sbjct: 55 HISPNNRNAI----HPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVPQRL 110
Query: 257 QE 258
+
Sbjct: 111 DQ 112
>pdb|1U39|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 80
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 293 FITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTL 335
I + GG A+R G ++VG R++E+NG S++ H++ V+ L
Sbjct: 25 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHIL 66
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 194 FISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLK 246
I ++ GG+A G +R+G RI+ +NG+ V HE+ V L EI +K
Sbjct: 25 IICSLMRGGIAE-RGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMK 76
>pdb|2V1W|A Chain A, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
pdb|2V1W|B Chain B, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
Length = 90
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 161 QDVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
V L P GF ++GG D S + IS + G AAL+ L GD I A+N
Sbjct: 4 HSVTLRGPSPWGFRLVGGRDFSA--------PLTISRVHAGSKAALAA-LCPGDLIQAIN 54
Query: 221 GRDVSKVTHEEA 232
G +TH EA
Sbjct: 55 GESTELMTHLEA 66
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 190 KPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAV 233
K G +I + PG A +G L GDR++ VNG +V K TH++ V
Sbjct: 26 KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVV 68
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 286 DKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLT 345
+K G +I + G A++ G L G RL+EVNG ++ +HQ+ V+ +R + + + L
Sbjct: 23 EKGKLGQYIRLVEPGSPAEKAGLL-AGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL 81
Query: 346 V 346
V
Sbjct: 82 V 82
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 190 KPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAV 233
K G +I + PG A +G L GDR++ VNG +V K TH++ V
Sbjct: 26 KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVV 68
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 286 DKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLT 345
+K G +I + G A++ G L G RL+EVNG ++ +HQ+ V+ +R + + + L
Sbjct: 23 EKGKLGQYIRLVEPGSPAEKAGLL-AGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL 81
Query: 346 V 346
V
Sbjct: 82 V 82
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 190 KPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAV 233
K G +I + PG A +G L GDR++ VNG +V K TH++ V
Sbjct: 26 KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVV 68
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 286 DKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLT 345
+K G +I + G A++ G L G RL+EVNG ++ +HQ+ V+ +R + + + L
Sbjct: 23 EKGKLGQYIRLVEPGSPAEKAGLL-AGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL 81
Query: 346 V 346
V
Sbjct: 82 V 82
>pdb|2EEG|A Chain A, Solution Structure Of Pdz Domain Of Pdz And Lim Domain
Protein
Length = 94
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 156 SSLFLQDVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDR 215
SS V L P GF ++GG D S + IS + G AAL+ L GD
Sbjct: 5 SSGMPHSVTLRGPSPWGFRLVGGRDFSAP--------LTISRVHAGSKAALA-ALCPGDL 55
Query: 216 ILAVNGRDVSKVTHEEA 232
I A+NG +TH EA
Sbjct: 56 IQAINGESTELMTHLEA 72
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 292 VFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTL 335
V I++I GGAA++ G L G +LE+NG+ + G E + L
Sbjct: 50 VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLL 93
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 184 IPFG----QHKPGIFISHIVPGGVAALSGKLRMGDRILAVN-----GRDVSKV 227
IP G + IS IV GG A SG L GD +L +N G+DV++V
Sbjct: 37 IPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEV 89
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 167 KSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSK 226
K GP G+ +D S KPG FI + P A SG LR DRI+ VNG +
Sbjct: 11 KKGPSGYGFNLHSDKS-------KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEG 62
Query: 227 VTHEEAVLAL 236
H + V A+
Sbjct: 63 KQHGDVVSAI 72
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 162 DVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
DV P P GF I GG D H P I ++ + G A LR GD I+A+NG
Sbjct: 6 DVAGP--APWGFRITGGRDF-------HTP-IMVTKVAERG-KAKDADLRPGDIIVAING 54
Query: 222 RDVSKVTHEEAVLALLE-PCPEILLKIQHD 250
+ H EA + + P P L++Q D
Sbjct: 55 ESAEGMLHAEAQSKIRQSPSP---LRLQLD 81
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 292 VFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISL 344
+ +TK+ G AK D L+ G ++ +NG S G H EA + +R S + L
Sbjct: 27 IMVTKVAERGKAK-DADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRL 78
>pdb|1Y7N|A Chain A, Solution Structure Of The Second Pdz Domain Of The Human
Neuronal Adaptor X11alpha
Length = 90
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 293 FITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTL 335
I + GG A+R G ++VG R++E+NG S++ H++ V+ L
Sbjct: 34 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHIL 75
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 194 FISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLK 246
I ++ GG+A G +R+G RI+ +NG+ V HE+ V L EI +K
Sbjct: 34 IICSLMRGGIAE-RGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMK 85
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 167 KSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSK 226
K GP G+ +D S KPG FI + P A SG LR DRI+ VNG +
Sbjct: 16 KKGPSGYGFNLHSDKS-------KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEG 67
Query: 227 VTHEEAVLAL 236
H + V A+
Sbjct: 68 KQHGDVVSAI 77
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
+T+ +Q+ E G I+ R Q N ++ I KI A G L+ G L +
Sbjct: 19 VTVEKQDNETFGFEIQS-YRPQNQNAC-SSEMFTLICKIQEDSPAHCAG-LQAGDVLANI 75
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISL 344
NG+S G ++++ V+ +R SG+ +++
Sbjct: 76 NGVSTEGFTYKQVVDLIRSSGNLLTI 101
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 33.9 bits (76), Expect = 0.20, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
+G SI GG Q+ P ++I + AAL G + GD I VNGR + T
Sbjct: 38 IGISIGGG--------AQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKV 89
Query: 231 EAVLALLEPCPEILL 245
E + E E+ +
Sbjct: 90 EVAKMIQEVKGEVTI 104
>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A
C-Terminal Extension From Human Beta-Tropomyosin
Length = 87
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 162 DVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
DV P P GF I GG D H P I ++ + G A LR GD I+A+NG
Sbjct: 7 DVAGP--APWGFRITGGRDF-------HTP-IMVTKVAERGKAK-DADLRPGDIIVAING 55
Query: 222 RDVSKVTHEEAVLALLE-PCPEILLKIQHD 250
+ H EA + + P P L++Q D
Sbjct: 56 ESAEGMLHAEAQSKIRQSPSP---LRLQLD 82
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 292 VFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISL 344
+ +TK+ G AK D L+ G ++ +NG S G H EA + +R S + L
Sbjct: 28 IMVTKVAERGKAK-DADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRL 79
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 260 TLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVN 319
T +R+ G + GG D+ DE + I + G A DG+++ G ++ VN
Sbjct: 4 TKLRKSSRGFGFTVVGG---------DEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVN 54
Query: 320 GMSLLGASHQEAVNTLRY--SGHQISLTVCK 348
+LG +H + V + G + L +C+
Sbjct: 55 DTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIF--ISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVT 228
GF+++GG + P F I +V G AAL GK+ GD I++VN V T
Sbjct: 13 FGFTVVGGDE----------PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHT 62
Query: 229 HEEAV 233
H + V
Sbjct: 63 HAQVV 67
>pdb|2UZC|A Chain A, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|B Chain B, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|C Chain C, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|D Chain D, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|E Chain E, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
Length = 88
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V L P GF + GG D + +P + IS + GG AA +R+GD +L+++G
Sbjct: 7 VSLVGPAPWGFRLQGGKDFN-MP-------LTISSLKDGGKAA-QANVRIGDVVLSIDGI 57
Query: 223 DVSKVTHEEA 232
+ +TH EA
Sbjct: 58 NAQGMTHLEA 67
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 171 LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHE 230
+G SI GG Q+ P ++I + AAL G + GD I VNGR + T
Sbjct: 16 IGISIGGG--------AQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKV 67
Query: 231 EAVLALLEPCPEILL 245
E + E E+ +
Sbjct: 68 EVAKMIQEVKGEVTI 82
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 190 KPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAV 233
+ G FI + PG A + LR GDR++ VNG +V TH + V
Sbjct: 24 RRGQFIRRVEPGSPAE-AAALRAGDRLVEVNGVNVEGETHHQVV 66
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
G F+S ++PG +A +G ++ GD I ++NG+ ++ + +A EP ++ L + +
Sbjct: 264 GAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNG 322
Query: 252 HP 253
P
Sbjct: 323 KP 324
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 210 LRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEIL 244
LR GD+ILAVN +V K +HE+ V+ L+ C +L
Sbjct: 41 LRAGDQILAVNEINVKKASHED-VVKLIGKCSGVL 74
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 194 FISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEA 232
IS+I A G L++GDR++A+NG T EEA
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEA 77
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 293 FITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFER 352
I+ I + A+R G L++G R++ +NG+ ++ +EA LR S +T+ F+
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDV 98
Query: 353 GD 354
+
Sbjct: 99 AE 100
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse Glutamate
Receptor Interacting Protein 1a-L (Grip1) Homolog
Length = 122
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 194 FISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEA 232
IS+I A G L++GDR++A+NG T EEA
Sbjct: 48 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEA 86
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 293 FITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFER 352
I+ I + A+R G L++G R++ +NG+ ++ +EA LR S +T+ F+
Sbjct: 48 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDV 107
Query: 353 GD 354
+
Sbjct: 108 AE 109
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
G F+S ++PG +A +G ++ GD I ++NG+ ++ + +A EP ++ L + +
Sbjct: 264 GAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNG 322
Query: 252 HP 253
P
Sbjct: 323 KP 324
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 261 LIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNG 320
+I G+K G ++ +R G+ D + + G A+ G L+ G + +NG
Sbjct: 7 VIHSSGKKYGFSLRA-IRVYMGDS-DVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHING 63
Query: 321 MSLLGASHQEAVNTLRYSGHQISL 344
S+LG H + V L SG++ISL
Sbjct: 64 ESVLGLVHMDVVELLLKSGNKISL 87
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
Query: 12 GEQAGVILAAGEVVIHPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISL 62
++AG L AG+++ H +NG S+LG H + V L SG++ISL
Sbjct: 47 AQEAG--LRAGDLITH--------INGESVLGLVHMDVVELLLKSGNKISL 87
>pdb|2YT8|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3 (Neuron-
Specific X11l2 Protein) (Neuronal Munc18-1-Interacting
Protein 3) (Mint-3) (Adapter Protein X11gamma)
Length = 94
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 293 FITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTL 335
I + GG A+R G ++VG R++E+NG S++ H + L
Sbjct: 30 IICSLLRGGIAERGG-IRVGHRIIEINGQSVVATPHARIIELL 71
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 194 FISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLK 246
I ++ GG+A G +R+G RI+ +NG+ V H + L E E+ +K
Sbjct: 30 IICSLLRGGIAE-RGGIRVGHRIIEINGQSVVATPHARIIELLTEAYGEVHIK 81
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 193 IFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE 238
IF+ + GG A +G L GDRI+ VNG V T+ + V+AL++
Sbjct: 63 IFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQ-VIALIQ 106
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 170 PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTH 229
P+G ++ SC ++ I+ GG+ G L +GD IL +NG +V+ +
Sbjct: 25 PMGITLKLNEKQSCT----------VARILHGGMIHRQGSLHVGDEILEINGTNVTNHSV 74
Query: 230 EEAVLALLEPCPEILLKI 247
++ A+ E I LK+
Sbjct: 75 DQLQKAMKETKGMISLKV 92
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 294 ITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
+ +I GG R G L VG +LE+NG ++ S + ++ + ISL V
Sbjct: 40 VARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKV 92
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 293 FITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYS--GHQISLTV 346
+ I A+R G L+VG R+L +NG++ + +EA LR + H++ L V
Sbjct: 48 LVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAHKVVLEV 103
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 194 FISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEA 232
+ I P A G L++GDR+L++NG T EEA
Sbjct: 48 LVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEA 86
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed
With The Glycophorin C F127c Peptide
Length = 97
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 183 CIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPE 242
C+ + K ++ I+ GG+ G L +GD IL +NG +V+ + ++ A+ E
Sbjct: 29 CLKLNE-KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGM 87
Query: 243 ILLKI 247
I LK+
Sbjct: 88 ISLKV 92
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 294 ITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
+ +I GG R G L VG +LE+NG ++ S + ++ + ISL V
Sbjct: 40 VARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKV 92
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 293 FITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFER 352
F+ +++ A+ G L G + VNG+++ G H+E V+ ++ SG+ + L G E
Sbjct: 40 FVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLYGTEE 98
Query: 353 GDI 355
+
Sbjct: 99 SQL 101
>pdb|1WF7|A Chain A, Solution Structure Of The Pdz Domain Of Enigma Homologue
Protein
Length = 103
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 170 PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTH 229
P GF + GG D + +P + IS + GG A+ +R+GD +L+++G +TH
Sbjct: 16 PWGFRLQGGKDFN-MP-------LTISSLKDGGKAS-QAHVRIGDVVLSIDGISAQGMTH 66
Query: 230 EEA 232
EA
Sbjct: 67 LEA 69
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 294 ITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERG 353
I+ + GG A + +++G +L ++G+S G +H EA N ++ +++T+
Sbjct: 33 ISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTL------- 84
Query: 354 DIERRASTSEGSRSVTQSMSS 374
+RAS + S V+ SS
Sbjct: 85 ---QRASAAAKSEPVSSGPSS 102
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 194 FISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE 238
+ H+ GG A+ +G LR GD I VNG V + H E V +L+
Sbjct: 39 MVWHVEDGGPASEAG-LRQGDLITHVNGEPVHGLVHTEVVELILK 82
>pdb|3CDD|A Chain A, Crystal Structure Of Prophage Muso2, 43 Kda Tail Protein
From Shewanella Oneidensis
pdb|3CDD|B Chain B, Crystal Structure Of Prophage Muso2, 43 Kda Tail Protein
From Shewanella Oneidensis
pdb|3CDD|C Chain C, Crystal Structure Of Prophage Muso2, 43 Kda Tail Protein
From Shewanella Oneidensis
pdb|3CDD|D Chain D, Crystal Structure Of Prophage Muso2, 43 Kda Tail Protein
From Shewanella Oneidensis
pdb|3CDD|E Chain E, Crystal Structure Of Prophage Muso2, 43 Kda Tail Protein
From Shewanella Oneidensis
pdb|3CDD|F Chain F, Crystal Structure Of Prophage Muso2, 43 Kda Tail Protein
From Shewanella Oneidensis
Length = 361
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 103 FKQGQWSTVVTAHQRLDTGY---GLPS--NSTVAAHISSSLKPSILVTYNFFSPSVRSSS 157
KQGQ TV +R+ TGY +PS ST+ +S K + LV + PS + ++
Sbjct: 57 IKQGQACTVDIGGERVITGYVDDWVPSYDESTITISVSGRDKTADLVDCSIDYPSGQFNN 116
Query: 158 LFLQDVVLPKSGPLGFSIIGGTD 180
L + P G +I TD
Sbjct: 117 QTLTQIADIVCKPFGIKVIVNTD 139
>pdb|2Q8P|A Chain A, Crystal Structure Of Selenomethionine Labelled S. Aureus
Isde Complexed With Heme
Length = 260
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 191 PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLA----LLEPCPEILLK 246
P + I VPG + K +GD + G +V KV + + + LL P+I+L+
Sbjct: 138 PKVLILXGVPGSYLVATDKSYIGDLVKIAGGENVIKVKDRQYISSNTENLLNINPDIILR 197
Query: 247 IQH 249
+ H
Sbjct: 198 LPH 200
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 170 PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTH 229
P+G ++ + CI ++ I+ GG+ G L +GD I +NG V+ T
Sbjct: 14 PMGITLKMNELNHCI----------VARIMHGGMIHRQGTLHVGDEIREINGISVANQTV 63
Query: 230 EEAVLALLEPCPEILLKI 247
E+ L E I KI
Sbjct: 64 EQLQKMLREMRGSITFKI 81
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 293 FITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGF 350
+ +I GG R G L VG + E+NG+S+ + ++ LR I+ + +
Sbjct: 28 IVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSY 85
>pdb|2Q8Q|A Chain A, Crystal Structure Of S. Aureus Isde Complexed With Heme
Length = 260
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 191 PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLA----LLEPCPEILLK 246
P + I VPG + K +GD + G +V KV + + + LL P+I+L+
Sbjct: 138 PKVLILMGVPGSYLVATDKSYIGDLVKIAGGENVIKVKDRQYISSNTENLLNINPDIILR 197
Query: 247 IQH 249
+ H
Sbjct: 198 LPH 200
>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|B Chain B, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|C Chain C, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|D Chain D, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
Length = 102
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 262 IRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGM 321
I++ G+K G ++ +R G+ D + + GG A+ G L G + VNG
Sbjct: 11 IQRSGKKYGFTLRA-IRVYMGD-TDVYSVHHIVWHVEEGGPAQEAG-LCAGDLITHVNGE 67
Query: 322 SLLGASHQEAVNTLRYSGHQISLT 345
+ G H E V + SG+++++T
Sbjct: 68 PVHGMVHPEVVELILKSGNKVAVT 91
>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
Length = 493
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Query: 148 FFSPSVRSSSLFLQDVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFIS-----HIVPGG 202
+ P + F D + K+ L F G + S I F P ++S HI GG
Sbjct: 50 YMRPPLSKELWFSDDPNVTKT--LRFKQWNGKERS-IYF--QPPSFYVSAQDLPHIENGG 104
Query: 203 VAALSGK----LRMGDRILAVNGRDVSKVTHEEAVLA 235
VA L+GK L + D ++ +N D S++T+E+ ++A
Sbjct: 105 VAVLTGKKVVQLDVRDNMVKLN--DGSQITYEKCLIA 139
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 293 FITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
F+ +++ A+ G L G + VNG+++ G H+E V+ ++ SG+ + L G
Sbjct: 40 FVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLYG 95
>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis
Inducing Factor (Aif)
Length = 514
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Query: 148 FFSPSVRSSSLFLQDVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFIS-----HIVPGG 202
+ P + F D + K+ L F G + S I F P ++S HI GG
Sbjct: 68 YMRPPLSKELWFSDDPNVTKT--LRFKQWNGKERS-IYF--QPPSFYVSAQDLPHIENGG 122
Query: 203 VAALSGK----LRMGDRILAVNGRDVSKVTHEEAVLA 235
VA L+GK L + D ++ +N D S++T+E+ ++A
Sbjct: 123 VAVLTGKKVVQLDVRDNMVKLN--DGSQITYEKCLIA 157
>pdb|2KL1|A Chain A, Solution Structure Of Gtr34c From Geobacillus
Thermodenitrificans. Northeast Structural Genomics
Consortium Target Gtr34c
Length = 94
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVS 225
G+++ ++P AA G+L GDRI A++G+ ++
Sbjct: 6 GVYVMSVLPNMPAA--GRLEAGDRIAAIDGQPIN 37
>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
pdb|3E17|B Chain B, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
Length = 88
Score = 28.1 bits (61), Expect = 8.9, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 292 VFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFE 351
+F+ ++ G A +DG L G +L++NG S +A + S ++ L V + E
Sbjct: 23 IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDLE 82
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 293 FITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLT 345
+ + G A + G LK G + +NG + G H E + L SG+++S+T
Sbjct: 36 IVWNVEEGSPACQAG-LKAGDLITHINGEPVHGLVHTEVIELLLKSGNKVSIT 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,125,200
Number of Sequences: 62578
Number of extensions: 488566
Number of successful extensions: 1731
Number of sequences better than 100.0: 248
Number of HSP's better than 100.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1075
Number of HSP's gapped (non-prelim): 600
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)