Query psy4596
Match_columns 439
No_of_seqs 417 out of 2715
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 20:57:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3209|consensus 100.0 2.8E-31 6.2E-36 262.3 24.4 292 22-352 517-840 (984)
2 KOG3209|consensus 100.0 1E-30 2.2E-35 258.3 24.7 236 21-349 687-982 (984)
3 KOG3580|consensus 99.9 3.9E-25 8.4E-30 215.3 23.7 320 2-349 22-489 (1027)
4 KOG3580|consensus 99.8 1.8E-20 3.9E-25 183.0 15.0 181 158-357 7-286 (1027)
5 PRK10139 serine endoprotease; 99.7 4.6E-16 9.9E-21 157.4 18.9 166 169-350 267-447 (455)
6 TIGR02037 degP_htrA_DO peripla 99.7 2.1E-16 4.6E-21 160.0 16.4 174 169-351 234-422 (428)
7 PRK10942 serine endoprotease; 99.7 1.6E-15 3.5E-20 154.2 18.2 168 169-350 288-465 (473)
8 PRK10779 zinc metallopeptidase 99.6 3.7E-14 8E-19 144.0 17.1 141 192-351 127-280 (449)
9 KOG3605|consensus 99.5 1.6E-14 3.4E-19 143.3 9.5 163 159-347 645-812 (829)
10 TIGR02037 degP_htrA_DO peripla 99.5 1.5E-13 3.3E-18 139.1 15.2 157 14-252 256-422 (428)
11 TIGR00054 RIP metalloprotease 99.5 3.7E-13 8E-18 135.4 16.2 135 190-351 127-262 (420)
12 PF00595 PDZ: PDZ domain (Also 99.5 4.2E-13 9E-18 103.3 9.4 80 259-347 2-81 (81)
13 PRK10942 serine endoprotease; 99.4 2.2E-12 4.8E-17 131.3 16.2 60 191-253 408-467 (473)
14 PRK10139 serine endoprotease; 99.4 2.7E-12 5.8E-17 130.1 16.0 59 191-252 390-448 (455)
15 PRK10779 zinc metallopeptidase 99.4 5.8E-12 1.3E-16 128.0 15.1 143 21-253 138-281 (449)
16 KOG3550|consensus 99.3 3.5E-12 7.6E-17 104.5 8.4 81 258-347 92-172 (207)
17 PF00595 PDZ: PDZ domain (Also 99.3 8E-12 1.7E-16 96.1 9.8 78 163-248 2-81 (81)
18 TIGR00054 RIP metalloprotease 99.3 5.7E-11 1.2E-15 119.7 14.5 59 192-253 204-263 (420)
19 KOG3605|consensus 99.3 2.2E-11 4.8E-16 121.2 10.1 119 21-245 686-809 (829)
20 KOG3551|consensus 99.1 2.5E-10 5.4E-15 107.5 8.0 83 257-348 86-168 (506)
21 KOG3549|consensus 99.1 1.3E-09 2.7E-14 101.4 12.0 86 254-348 53-138 (505)
22 KOG3550|consensus 99.1 6.3E-10 1.4E-14 91.3 8.3 85 159-251 90-175 (207)
23 KOG3553|consensus 99.0 3.4E-10 7.3E-15 86.2 5.7 80 268-349 36-116 (124)
24 cd00136 PDZ PDZ domain, also c 99.0 1.7E-09 3.8E-14 80.4 9.2 67 268-346 2-69 (70)
25 KOG3553|consensus 99.0 1.1E-10 2.3E-15 88.8 2.2 81 170-252 36-118 (124)
26 cd00992 PDZ_signaling PDZ doma 99.0 3.7E-09 8E-14 81.2 10.7 78 259-346 4-81 (82)
27 PF13180 PDZ_2: PDZ domain; PD 99.0 2.8E-09 6.2E-14 82.0 9.9 72 170-253 2-75 (82)
28 cd00992 PDZ_signaling PDZ doma 99.0 8.2E-09 1.8E-13 79.3 11.1 78 161-247 2-81 (82)
29 smart00228 PDZ Domain present 98.9 1.6E-08 3.5E-13 78.0 11.9 80 162-250 4-84 (85)
30 smart00228 PDZ Domain present 98.9 1.4E-08 3E-13 78.4 10.8 79 260-349 6-84 (85)
31 cd00136 PDZ PDZ domain, also c 98.9 1.8E-08 4E-13 74.8 9.6 67 170-247 2-69 (70)
32 PF13180 PDZ_2: PDZ domain; PD 98.9 1.7E-08 3.8E-13 77.6 8.9 60 290-352 14-75 (82)
33 KOG3551|consensus 98.8 9E-09 2E-13 97.2 8.2 82 161-250 86-169 (506)
34 KOG3571|consensus 98.8 1.1E-08 2.4E-13 99.6 7.9 84 264-354 258-344 (626)
35 KOG3549|consensus 98.8 1.5E-08 3.3E-13 94.3 7.9 86 159-252 54-141 (505)
36 KOG3606|consensus 98.8 5E-08 1.1E-12 88.0 10.7 103 254-356 157-260 (358)
37 cd00988 PDZ_CTP_protease PDZ d 98.8 5E-08 1.1E-12 75.5 8.9 59 290-349 13-72 (85)
38 cd00988 PDZ_CTP_protease PDZ d 98.7 1.3E-07 2.8E-12 73.1 10.9 69 170-250 3-72 (85)
39 KOG1892|consensus 98.7 3.4E-08 7.4E-13 102.4 8.0 79 265-349 941-1019(1629)
40 KOG1892|consensus 98.7 6.9E-08 1.5E-12 100.2 9.2 98 147-250 922-1019(1629)
41 cd00991 PDZ_archaeal_metallopr 98.7 1.6E-07 3.6E-12 71.6 8.8 60 191-253 10-71 (79)
42 cd00991 PDZ_archaeal_metallopr 98.6 2.5E-07 5.5E-12 70.5 8.9 59 289-350 9-69 (79)
43 cd00987 PDZ_serine_protease PD 98.6 2.1E-07 4.5E-12 72.7 8.3 79 170-251 2-83 (90)
44 cd00989 PDZ_metalloprotease PD 98.6 4E-07 8.6E-12 69.3 8.8 59 191-252 12-71 (79)
45 cd00990 PDZ_glycyl_aminopeptid 98.5 5.4E-07 1.2E-11 68.8 9.0 57 192-252 13-69 (80)
46 cd00987 PDZ_serine_protease PD 98.5 3.8E-07 8.3E-12 71.2 7.0 59 289-350 23-83 (90)
47 KOG3651|consensus 98.4 8.9E-07 1.9E-11 81.3 8.8 82 258-348 7-88 (429)
48 KOG3606|consensus 98.4 5.3E-07 1.2E-11 81.5 6.9 93 159-251 158-254 (358)
49 cd00990 PDZ_glycyl_aminopeptid 98.4 8.5E-07 1.8E-11 67.7 6.9 57 290-350 12-68 (80)
50 KOG3571|consensus 98.4 1.2E-06 2.6E-11 85.8 9.4 88 157-250 247-339 (626)
51 cd00986 PDZ_LON_protease PDZ d 98.4 1.7E-06 3.7E-11 65.9 8.3 58 192-253 9-68 (79)
52 cd00989 PDZ_metalloprotease PD 98.3 2.3E-06 5E-11 65.0 8.0 57 291-350 13-70 (79)
53 KOG3552|consensus 98.3 6.5E-07 1.4E-11 93.1 6.0 57 291-349 76-132 (1298)
54 cd00986 PDZ_LON_protease PDZ d 98.3 3.8E-06 8.2E-11 64.0 8.3 57 290-350 8-66 (79)
55 KOG3552|consensus 98.3 6.9E-07 1.5E-11 92.9 5.2 78 159-250 55-132 (1298)
56 TIGR02038 protease_degS peripl 98.3 2.9E-06 6.3E-11 83.7 8.7 82 169-253 255-339 (351)
57 KOG3651|consensus 98.3 3.9E-06 8.4E-11 77.2 8.5 80 161-248 6-87 (429)
58 TIGR03279 cyano_FeS_chp putati 98.2 2E-05 4.3E-10 78.1 13.6 140 195-346 2-146 (433)
59 PRK10898 serine endoprotease; 98.2 9.1E-06 2E-10 80.1 10.4 82 169-253 256-340 (353)
60 KOG4371|consensus 98.2 6.5E-06 1.4E-10 86.9 9.0 165 163-349 1151-1329(1332)
61 PLN00049 carboxyl-terminal pro 98.2 1.2E-05 2.7E-10 80.3 10.6 77 170-252 86-163 (389)
62 PLN00049 carboxyl-terminal pro 98.2 7.6E-06 1.6E-10 81.8 9.0 59 291-350 103-162 (389)
63 COG0793 Prc Periplasmic protea 98.2 6.2E-06 1.3E-10 82.5 8.3 73 265-349 98-171 (406)
64 TIGR00225 prc C-terminal pepti 98.1 1.6E-05 3.4E-10 78.1 10.4 72 170-253 52-124 (334)
65 TIGR00225 prc C-terminal pepti 98.1 7.6E-06 1.6E-10 80.3 8.2 59 291-350 63-122 (334)
66 COG0793 Prc Periplasmic protea 98.1 1.7E-05 3.6E-10 79.4 10.5 72 169-251 100-172 (406)
67 KOG0609|consensus 98.1 1.2E-05 2.5E-10 80.1 7.8 83 258-351 125-207 (542)
68 PF04495 GRASP55_65: GRASP55/6 98.0 5.9E-05 1.3E-09 63.6 10.9 99 169-276 26-130 (138)
69 TIGR01713 typeII_sec_gspC gene 98.0 2.2E-05 4.7E-10 73.7 8.3 60 191-253 191-252 (259)
70 TIGR02860 spore_IV_B stage IV 97.9 0.00013 2.7E-09 72.0 12.8 78 192-275 106-197 (402)
71 PRK11186 carboxy-terminal prot 97.9 5.1E-05 1.1E-09 80.0 10.4 70 170-251 245-321 (667)
72 KOG4371|consensus 97.9 2.5E-05 5.4E-10 82.7 7.8 142 27-250 1187-1329(1332)
73 PRK11186 carboxy-terminal prot 97.9 2.4E-05 5.1E-10 82.5 7.6 58 291-349 256-320 (667)
74 TIGR02038 protease_degS peripl 97.9 2.7E-05 5.8E-10 76.8 7.4 58 290-350 278-337 (351)
75 KOG1421|consensus 97.9 0.00014 3E-09 74.2 12.3 132 193-337 305-446 (955)
76 PRK10898 serine endoprotease; 97.9 4.9E-05 1.1E-09 75.0 8.6 58 290-350 279-338 (353)
77 TIGR01713 typeII_sec_gspC gene 97.8 4.2E-05 9.2E-10 71.8 7.2 59 290-351 191-251 (259)
78 KOG3834|consensus 97.8 0.00012 2.7E-09 70.9 10.1 141 192-347 16-165 (462)
79 KOG3542|consensus 97.8 3.1E-05 6.7E-10 78.5 5.7 74 264-348 545-618 (1283)
80 KOG3542|consensus 97.7 5.9E-05 1.3E-09 76.5 6.7 80 159-248 535-617 (1283)
81 KOG4407|consensus 97.6 9.6E-05 2.1E-09 79.8 5.7 104 193-349 98-201 (1973)
82 KOG0606|consensus 97.6 0.00015 3.2E-09 78.1 6.9 83 262-347 632-714 (1205)
83 PF14685 Tricorn_PDZ: Tricorn 97.4 0.00097 2.1E-08 51.4 8.3 59 192-252 13-81 (88)
84 KOG0609|consensus 97.4 0.00054 1.2E-08 68.6 8.4 82 159-250 122-205 (542)
85 KOG3129|consensus 97.4 0.00099 2.2E-08 58.6 8.3 71 192-266 140-212 (231)
86 KOG1320|consensus 97.3 0.0069 1.5E-07 60.9 14.6 151 191-351 287-458 (473)
87 TIGR03279 cyano_FeS_chp putati 97.3 0.00049 1.1E-08 68.4 6.1 49 294-347 2-50 (433)
88 PF04495 GRASP55_65: GRASP55/6 97.2 0.0013 2.8E-08 55.5 7.5 74 266-348 25-100 (138)
89 COG0265 DegQ Trypsin-like seri 97.2 0.002 4.3E-08 63.7 9.7 79 170-253 250-331 (347)
90 TIGR02860 spore_IV_B stage IV 97.2 0.0014 3E-08 64.8 8.4 48 300-350 123-171 (402)
91 KOG1421|consensus 97.2 0.009 2E-07 61.4 14.0 73 172-249 385-459 (955)
92 KOG0606|consensus 97.1 0.0012 2.6E-08 71.3 7.2 85 162-248 629-714 (1205)
93 KOG3938|consensus 97.0 0.001 2.2E-08 60.6 4.8 80 257-348 128-209 (334)
94 COG3480 SdrC Predicted secrete 96.9 0.0055 1.2E-07 57.7 9.3 81 192-276 131-216 (342)
95 KOG3129|consensus 96.8 0.0034 7.3E-08 55.4 6.5 62 292-354 141-204 (231)
96 PF14685 Tricorn_PDZ: Tricorn 96.7 0.0035 7.6E-08 48.4 5.3 58 291-350 13-80 (88)
97 KOG1738|consensus 96.7 0.0038 8.3E-08 63.7 7.0 77 264-351 210-286 (638)
98 KOG3834|consensus 96.6 0.029 6.4E-07 54.9 11.8 148 21-267 27-183 (462)
99 COG3975 Predicted protease wit 96.5 0.005 1.1E-07 61.8 6.2 61 281-350 453-513 (558)
100 KOG3938|consensus 96.4 0.0044 9.6E-08 56.5 4.8 79 160-248 127-208 (334)
101 PRK09681 putative type II secr 96.4 0.0041 8.9E-08 58.4 4.4 53 16-69 208-267 (276)
102 PRK09681 putative type II secr 96.4 0.006 1.3E-07 57.3 5.4 48 203-253 219-268 (276)
103 COG0265 DegQ Trypsin-like seri 96.3 0.015 3.2E-07 57.5 8.1 59 289-350 269-329 (347)
104 COG3975 Predicted protease wit 96.2 0.012 2.6E-07 59.2 7.0 53 192-253 463-515 (558)
105 COG3480 SdrC Predicted secrete 95.9 0.029 6.2E-07 53.0 7.5 58 291-352 131-190 (342)
106 KOG3532|consensus 95.9 0.025 5.4E-07 58.2 7.4 57 291-350 399-455 (1051)
107 KOG3532|consensus 95.7 0.035 7.6E-07 57.1 7.5 55 192-249 399-453 (1051)
108 COG3031 PulC Type II secretory 95.1 0.042 9.1E-07 49.7 5.3 52 200-254 216-269 (275)
109 PF12812 PDZ_1: PDZ-like domai 94.7 0.25 5.4E-06 37.3 8.0 45 292-339 32-76 (78)
110 KOG1320|consensus 94.7 0.1 2.2E-06 52.7 7.5 59 192-253 399-459 (473)
111 COG3031 PulC Type II secretory 94.3 0.19 4.1E-06 45.6 7.5 52 300-354 217-270 (275)
112 KOG1738|consensus 94.2 0.092 2E-06 54.0 6.0 71 170-250 214-284 (638)
113 PF12812 PDZ_1: PDZ-like domai 93.9 0.15 3.2E-06 38.5 5.2 66 170-239 10-75 (78)
114 KOG4407|consensus 91.3 0.19 4.1E-06 55.6 3.6 55 193-248 145-199 (1973)
115 COG0750 Predicted membrane-ass 83.8 3.3 7.2E-05 41.1 7.2 53 194-249 132-188 (375)
116 COG0750 Predicted membrane-ass 83.1 3.4 7.4E-05 41.1 7.0 53 293-348 132-188 (375)
117 PF11874 DUF3394: Domain of un 81.0 18 0.0004 31.9 9.7 78 228-318 61-149 (183)
118 PF11874 DUF3394: Domain of un 80.1 28 0.00062 30.8 10.6 39 170-220 112-150 (183)
119 KOG2921|consensus 74.7 4.1 8.9E-05 39.9 4.2 46 289-337 219-265 (484)
120 KOG2921|consensus 71.6 6.1 0.00013 38.8 4.5 44 191-237 220-264 (484)
121 PF01079 Hint: Hint module; I 54.1 17 0.00037 33.2 3.9 88 198-317 21-114 (217)
122 COG0461 PyrE Orotate phosphori 37.1 49 0.0011 29.8 4.0 38 24-61 106-143 (201)
123 KOG0792|consensus 33.9 20 0.00044 39.8 1.3 69 168-239 715-797 (1144)
124 KOG0792|consensus 33.1 25 0.00054 39.2 1.8 71 266-340 715-799 (1144)
125 PRK13810 orotate phosphoribosy 32.2 91 0.002 27.7 5.0 36 26-61 118-153 (187)
126 COG5233 GRH1 Peripheral Golgi 27.5 36 0.00079 32.6 1.6 30 293-323 66-95 (417)
127 PRK13810 orotate phosphoribosy 27.4 1.2E+02 0.0025 27.0 4.8 37 307-343 117-153 (187)
128 COG5233 GRH1 Peripheral Golgi 26.8 41 0.00088 32.3 1.8 31 194-225 66-96 (417)
129 KOG3369|consensus 26.1 52 0.0011 28.6 2.2 31 16-46 41-71 (199)
130 TIGR01744 XPRTase xanthine pho 25.7 88 0.0019 27.9 3.7 34 27-60 114-147 (191)
131 cd04486 YhcR_OBF_like YhcR_OBF 23.6 78 0.0017 23.6 2.6 29 14-43 32-60 (78)
132 COG3127 Predicted ABC-type tra 23.2 90 0.0019 33.8 3.7 25 299-324 602-627 (829)
133 PRK09219 xanthine phosphoribos 22.9 1E+02 0.0022 27.5 3.6 34 27-60 114-147 (189)
No 1
>KOG3209|consensus
Probab=100.00 E-value=2.8e-31 Score=262.28 Aligned_cols=292 Identities=27% Similarity=0.376 Sum_probs=201.3
Q ss_pred CcccccCCCCEEEEECCeecCCCCHHHHHHHHhh--cCCeEEEEEEeccccCccccccCCCCCCCCccccCCCCCcCCCc
Q psy4596 22 GEVVIHPVGMRLLEVNGMSLLGASHQEAVNTLRY--SGHQISLTVCKGFERGDIERRASTSEGSRSVTQSMSSLDREDLD 99 (439)
Q Consensus 22 ~~~~gL~~GD~Il~VNG~~v~~~~~~~~v~~l~~--~~~~v~L~V~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (439)
-..-+|+.||.|+++|++++..++|.+++++|+. .|..+.|+|.|++.. .++.+.. ..++.+.
T Consensus 517 ~~c~gl~eGd~IVei~~rnvr~L~h~qvvdmlke~piG~r~~Llv~RGgp~----------s~~ktpk----~~~r~~~- 581 (984)
T KOG3209|consen 517 QDCPGLSEGDLIVEINERNVRALTHTQVVDMLKECPIGSRVHLLVKRGGPP----------SPSKTPK----AADRKEN- 581 (984)
T ss_pred ccCCCCCCCCeEEecccccccccchHHHHHHHHhccCCcceeEEEecCCCC----------CCCcCcc----hhhhccC-
Confidence 3455799999999999999999999999999998 778999999996521 1111111 0111000
Q ss_pred ccccccCccceeeeccccCCCCCCCCCCCCc--ccc---------cCCCCCc-ccccccCcCCCCCCC--CCceeEEEEE
Q psy4596 100 TDVFKQGQWSTVVTAHQRLDTGYGLPSNSTV--AAH---------ISSSLKP-SILVTYNFFSPSVRS--SSLFLQDVVL 165 (439)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~s~~~-~~~~~~~~~~~~~~~--~~~~~~~v~l 165 (439)
+++....... +..+...++|++..+ +.+ .+.+... +.....++..++..+ ......+|.|
T Consensus 582 -----~~s~~~s~sa-p~i~q~~Pfpp~~rs~~pd~t~~~~qrkpdp~~~we~Sraiyesr~~Ps~tsn~~pdk~ldV~L 655 (984)
T KOG3209|consen 582 -----QGSNQMSSSA-PLIPQKLPFPPTSRSEEPDNTRNTLQRKPDPTEEWEKSRAIYESRMRPSSTSNQKPDKELDVFL 655 (984)
T ss_pred -----CCCccccccc-cccCCCCCCCCcccccCCcccccccccCCChHHHhhhcccchhccCCCCCccccCCccceeEEE
Confidence 0110000000 001111112221000 000 0000000 111111111111100 1125667888
Q ss_pred ecCC-CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhC--CCCe
Q psy4596 166 PKSG-PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE--PCPE 242 (439)
Q Consensus 166 ~~~~-~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~--~~~~ 242 (439)
+|.. +|||.|.++.+ +..+++|..|.+.++|+..|||+.||.|+.|+|.+|.+.+|.+++.+|.. ..+.
T Consensus 656 ~rkesGFGFRiLGG~e--------p~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArngh 727 (984)
T KOG3209|consen 656 RRKESGFGFRILGGDE--------PGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGH 727 (984)
T ss_pred EeeccccceEEecCCC--------CCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCc
Confidence 8876 99999999876 34579999999999999999999999999999999999999999998874 3678
Q ss_pred EEEEEecCCC-------------CCCcceeeeeeccCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCC
Q psy4596 243 ILLKIQHDPH-------------PEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRL 309 (439)
Q Consensus 243 v~l~v~r~~~-------------~~~~~~v~l~~~~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L 309 (439)
|.|+|+|.-. +.....+++.++++++|||.|..... ..+.-|..|.+||||+++|+|
T Consensus 728 V~LtVRRkv~~~~~~rsp~~s~~~~~~yDV~lhR~ENeGFGFVi~sS~~----------kp~sgiGrIieGSPAdRCgkL 797 (984)
T KOG3209|consen 728 VNLTVRRKVRTGPARRSPRNSAAPSGPYDVVLHRKENEGFGFVIMSSQN----------KPESGIGRIIEGSPADRCGKL 797 (984)
T ss_pred eEEEEeeeeeeccccCCcccccCCCCCeeeEEecccCCceeEEEEeccc----------CCCCCccccccCChhHhhccc
Confidence 9999987421 12235788999999999999875321 112239999999999999999
Q ss_pred CCCCEEEEECCEEcCCCCHHHHHHHHhcCCCeEEEEEecCCcc
Q psy4596 310 KVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFER 352 (439)
Q Consensus 310 ~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 352 (439)
++||+|++|||+++.+++|.+++++||.+|-.|+|++....+.
T Consensus 798 kVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~ee~ 840 (984)
T KOG3209|consen 798 KVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTIIPPEEA 840 (984)
T ss_pred cccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEcChhcc
Confidence 9999999999999999999999999999999999999876543
No 2
>KOG3209|consensus
Probab=99.98 E-value=1e-30 Score=258.33 Aligned_cols=236 Identities=28% Similarity=0.477 Sum_probs=185.5
Q ss_pred cCcccccCCCCEEEEECCeecCCCCHHHHHHHHhh--cCCeEEEEEEeccccCccccccCCCCCCCCccccCCCCCcCCC
Q psy4596 21 AGEVVIHPVGMRLLEVNGMSLLGASHQEAVNTLRY--SGHQISLTVCKGFERGDIERRASTSEGSRSVTQSMSSLDREDL 98 (439)
Q Consensus 21 a~~~~gL~~GD~Il~VNG~~v~~~~~~~~v~~l~~--~~~~v~L~V~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (439)
|.+++.|+.||.|+.|||++|.+.+|.+|++++.. -...|.|+|+|...... +
T Consensus 687 Ae~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtVRRkv~~~~---------------~---------- 741 (984)
T KOG3209|consen 687 AEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTVRRKVRTGP---------------A---------- 741 (984)
T ss_pred ccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEEeeeeeecc---------------c----------
Confidence 67888999999999999999999999999999987 34679999998321000 0
Q ss_pred cccccccCccceeeeccccCCCCCCCCCCCCcccccCCCCCcccccccCcCCCCCCCCCceeEEEEEecCC--CccEEEe
Q psy4596 99 DTDVFKQGQWSTVVTAHQRLDTGYGLPSNSTVAAHISSSLKPSILVTYNFFSPSVRSSSLFLQDVVLPKSG--PLGFSII 176 (439)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~--~lG~~i~ 176 (439)
...+... .......+|.|++.. +|||.|.
T Consensus 742 -----------------~rsp~~s--------------------------------~~~~~~yDV~lhR~ENeGFGFVi~ 772 (984)
T KOG3209|consen 742 -----------------RRSPRNS--------------------------------AAPSGPYDVVLHRKENEGFGFVIM 772 (984)
T ss_pred -----------------cCCcccc--------------------------------cCCCCCeeeEEecccCCceeEEEE
Confidence 0000000 000124678898865 9999998
Q ss_pred eCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCCCCeEEEEEecCCCCC--
Q psy4596 177 GGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE-- 254 (439)
Q Consensus 177 ~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~-- 254 (439)
..... ++.-|..|.+||||+++|+|++||+|++|||++|.+++|.+.+.+++.++-.|+|+|.......
T Consensus 773 sS~~k---------p~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~ee~~~~ 843 (984)
T KOG3209|consen 773 SSQNK---------PESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTIIPPEEAGPP 843 (984)
T ss_pred ecccC---------CCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEcChhccCCC
Confidence 75432 2233999999999999999999999999999999999999999999999999999997321100
Q ss_pred ------------------------------------------------------CcceeeeeeccCcccceeecCCccCC
Q psy4596 255 ------------------------------------------------------GFQEITLIRQEGEKLGMHIKGGLRGQ 280 (439)
Q Consensus 255 ------------------------------------------------------~~~~v~l~~~~~~~lG~~i~~~~~~~ 280 (439)
.+.++. +.+...+|||+|+||.
T Consensus 844 ~~~~sa~~~s~~t~~~~~~q~~glp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~Ve-lErG~kGFGFSiRGGr--- 919 (984)
T KOG3209|consen 844 TSMTSAEKQSPFTQNGPYEQQYGLPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVE-LERGAKGFGFSIRGGR--- 919 (984)
T ss_pred CCCcchhhcCcccccCCHhHccCCCCCCccccccCCCCccccceeccccccccCCeeEEE-eeccccccceEeeccc---
Confidence 001222 3344678999999985
Q ss_pred CCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCeEEEEEecC
Q psy4596 281 RGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349 (439)
Q Consensus 281 ~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~ 349 (439)
.+..+.||-.+..+|||.++|++++||+|++|||++..+|+|+.|+++||+.+..+.|.+.|+
T Consensus 920 ------eynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~vll~Lr~g 982 (984)
T KOG3209|consen 920 ------EYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRVLLLLRRG 982 (984)
T ss_pred ------ccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEEEEEeccC
Confidence 245589999999999999999999999999999999999999999999999888777776654
No 3
>KOG3580|consensus
Probab=99.94 E-value=3.9e-25 Score=215.33 Aligned_cols=320 Identities=21% Similarity=0.262 Sum_probs=200.7
Q ss_pred CCcccccccccC-----cceeEEec-----CcccccCCCCEEEEECCeecCCCCHHHHHHHHhhcCCeEEEEEEeccccC
Q psy4596 2 GGIQTRVPWTGE-----QAGVILAA-----GEVVIHPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERG 71 (439)
Q Consensus 2 ~~~~~~~~~~~~-----~~Gi~vsa-----~~~~gL~~GD~Il~VNG~~v~~~~~~~~v~~l~~~~~~v~L~V~R~~~~~ 71 (439)
+||+++...... ...|+|++ -..+.||.||+|+.|||++++++.|..|++.|+.+++...++|.|+.+..
T Consensus 22 FGIAiSGGRDnPhf~~getSiViSDVlpGGPAeG~LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRprkvq 101 (1027)
T KOG3580|consen 22 FGIAISGGRDNPHFENGETSIVISDVLPGGPAEGLLQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPRKVQ 101 (1027)
T ss_pred ceeEeecCCCCCCccCCceeEEEeeccCCCCcccccccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccceee
Confidence 588888866642 45899983 24556999999999999999999999999999999999999999854332
Q ss_pred ccccccCCC--CCCCCccccCCC---------CCcCCCcccccccCccceeeeccccCCCCCCCCCCCCcccccCCCCCc
Q psy4596 72 DIERRASTS--EGSRSVTQSMSS---------LDREDLDTDVFKQGQWSTVVTAHQRLDTGYGLPSNSTVAAHISSSLKP 140 (439)
Q Consensus 72 ~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 140 (439)
-...++++. ...+........ ....++..+.....+|...................-......+.+ .
T Consensus 102 vpa~~asPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~~R~rsrer~ls~~~~gprs--~ 179 (1027)
T KOG3580|consen 102 VPALQASPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSRERDLSRDRRGPRS--R 179 (1027)
T ss_pred ccccCCCCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCccccccccccccccCCCCCcc--c
Confidence 222222220 000000000000 000001111111111111110000000000000000000000000 0
Q ss_pred ccccccCcCCCCCCCCCceeEEEEEecCC---CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEE
Q psy4596 141 SILVTYNFFSPSVRSSSLFLQDVVLPKSG---PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRIL 217 (439)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~---~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il 217 (439)
.-.....+...|.......+..+.|.|.. .||+.+.. .|||..+...|.|++.|.|+.||.|+
T Consensus 180 ~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrLgS--------------qIFvKeit~~gLAardgnlqEGDiiL 245 (1027)
T KOG3580|consen 180 SREHPSSRSPSPEPRGRPGPIKVLLVKSRANEEYGLRLGS--------------QIFVKEITRTGLAARDGNLQEGDIIL 245 (1027)
T ss_pred ccccccCCCCCCCccCCCCcceEEEEeeccchhhcccccc--------------hhhhhhhcccchhhccCCcccccEEE
Confidence 01111112222222222334455665532 77877643 48999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHHHHHhCCCCeEEEEEecCCCCC-------------------------------------------
Q psy4596 218 AVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE------------------------------------------- 254 (439)
Q Consensus 218 ~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~------------------------------------------- 254 (439)
+|||+...+|+..++..++.++...+.|+|.|+....
T Consensus 246 kINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~qtLiNiP~l~d~dSe~~disEi~tms~rs~spp~rrs~~~s~d~~ 325 (1027)
T KOG3580|consen 246 KINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQTLINIPSLNDSDSEIEDISEIETMSDRSFSPPERRSQYSSYDYH 325 (1027)
T ss_pred EECcEeeccccchhHHHHHHhccCceEEEEEecCCceeeecCCCccccccccchhhhhccccccCCCchhhhhccCcccc
Confidence 9999999999999999999988888999888653110
Q ss_pred -----------C-----------------c--------------------------------------------------
Q psy4596 255 -----------G-----------------F-------------------------------------------------- 256 (439)
Q Consensus 255 -----------~-----------------~-------------------------------------------------- 256 (439)
. +
T Consensus 326 s~s~h~p~~Ps~r~~~~~R~s~~gat~tPvks~~d~~~~~V~e~t~e~~~~q~p~lP~pk~~~~~~~~pS~~~m~~ygys 405 (1027)
T KOG3580|consen 326 SSSEHLPERPSSREDTPSRLSRMGATPTPVKSTGDIAGTVVPETTKEPRYQQEPPLPQPKAAPRTFLRPSPEDMAIYGYS 405 (1027)
T ss_pred CchhcCCCCCCccccchhhcccCCCCCCCccCccccCCccccccccCcccccCCCCCCcccCcceeeecCHHHHHHhcCC
Confidence 0 0
Q ss_pred -ceeeeeeccCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy4596 257 -QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTL 335 (439)
Q Consensus 257 -~~v~l~~~~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l 335 (439)
.+..+.-..+..+|+.+.||. +.||||..|..|+||+..| |+.||+||.||.++..++..+++|.+|
T Consensus 406 P~tk~VrF~KGdSvGLRLAGGN-----------DVGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfL 473 (1027)
T KOG3580|consen 406 PNTKMVRFKKGDSVGLRLAGGN-----------DVGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFL 473 (1027)
T ss_pred CCceeEEeecCCeeeeEeccCC-----------ceeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHH
Confidence 001122233455788888875 6699999999999999999 999999999999999999999999999
Q ss_pred hc--CCCeEEEEEecC
Q psy4596 336 RY--SGHQISLTVCKG 349 (439)
Q Consensus 336 ~~--~~~~v~l~v~r~ 349 (439)
-. .|+.|+|+.++.
T Consensus 474 L~lPkGEevtilaQ~k 489 (1027)
T KOG3580|consen 474 LELPKGEEVTILAQSK 489 (1027)
T ss_pred hcCCCCcEEeehhhhh
Confidence 87 668888876643
No 4
>KOG3580|consensus
Probab=99.84 E-value=1.8e-20 Score=183.00 Aligned_cols=181 Identities=26% Similarity=0.400 Sum_probs=147.6
Q ss_pred ceeEEEEEecCC--CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy4596 158 LFLQDVVLPKSG--PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLA 235 (439)
Q Consensus 158 ~~~~~v~l~~~~--~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~ 235 (439)
|+..+++|+|.. +|||.|.++.+++... .+...++|+.|.||+|| .|+|+.||+|+.|||+++.++.|..+++.
T Consensus 7 WEQhTvTL~kdp~rGFGIAiSGGRDnPhf~--~getSiViSDVlpGGPA--eG~LQenDrvvMVNGvsMenv~haFAvQq 82 (1027)
T KOG3580|consen 7 WEQHTVTLQKDPKRGFGIAISGGRDNPHFE--NGETSIVISDVLPGGPA--EGLLQENDRVVMVNGVSMENVLHAFAVQQ 82 (1027)
T ss_pred hhhheeeeecCCCCcceeEeecCCCCCCcc--CCceeEEEeeccCCCCc--ccccccCCeEEEEcCcchhhhHHHHHHHH
Confidence 466789999976 8999999999877532 34557999999999999 57799999999999999999999999999
Q ss_pred HhCCCCeEEEEEecCCCCC-------------------------------------------------------------
Q psy4596 236 LLEPCPEILLKIQHDPHPE------------------------------------------------------------- 254 (439)
Q Consensus 236 l~~~~~~v~l~v~r~~~~~------------------------------------------------------------- 254 (439)
|+++++...++|.|.....
T Consensus 83 LrksgK~A~ItvkRprkvqvpa~~asPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~~R~ 162 (1027)
T KOG3580|consen 83 LRKSGKVAAITVKRPRKVQVPALQASPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERA 162 (1027)
T ss_pred HHhhccceeEEecccceeeccccCCCCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCccccc
Confidence 9999999999998642100
Q ss_pred ------------------------------------CcceeeeeeccCcccceeecCCccCCCCCCCCCCCCCeEEEEeC
Q psy4596 255 ------------------------------------GFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKIN 298 (439)
Q Consensus 255 ------------------------------------~~~~v~l~~~~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~ 298 (439)
....+.+..+.++.||+.+ .+.|||+.+.
T Consensus 163 rsrer~ls~~~~gprs~~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrL---------------gSqIFvKeit 227 (1027)
T KOG3580|consen 163 RSRERDLSRDRRGPRSRSREHPSSRSPSPEPRGRPGPIKVLLVKSRANEEYGLRL---------------GSQIFVKEIT 227 (1027)
T ss_pred cccccccccCCCCCcccccccccCCCCCCCccCCCCcceEEEEeeccchhhcccc---------------cchhhhhhhc
Confidence 0011222333344444433 3479999999
Q ss_pred CCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCeEEEEEecCCccCcccc
Q psy4596 299 SGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIER 357 (439)
Q Consensus 299 ~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~~~~ 357 (439)
..|.|++.|+|+.||.||+|||+...+++..++..+|.++...+.|+|+|...+..+..
T Consensus 228 ~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~qtLiNi 286 (1027)
T KOG3580|consen 228 RTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQTLINI 286 (1027)
T ss_pred ccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCceeeec
Confidence 99999999999999999999999999999999999999999999999999876655544
No 5
>PRK10139 serine endoprotease; Provisional
Probab=99.71 E-value=4.6e-16 Score=157.40 Aligned_cols=166 Identities=23% Similarity=0.370 Sum_probs=124.8
Q ss_pred CCccEEEeeCCCCCCCCCCCC-CCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHh--CCCCeEEE
Q psy4596 169 GPLGFSIIGGTDHSCIPFGQH-KPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALL--EPCPEILL 245 (439)
Q Consensus 169 ~~lG~~i~~~~~~~~~~~g~~-~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~--~~~~~v~l 245 (439)
+.||+.+...++.....+++. ..|++|..|.++|||+++| |++||+|++|||+++. ++.++...+. ..++.+.+
T Consensus 267 ~~LGv~~~~l~~~~~~~lgl~~~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l 343 (455)
T PRK10139 267 GLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKL 343 (455)
T ss_pred cceeEEEEECCHHHHHhcCCCCCCceEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEE
Confidence 478998887765555555554 3499999999999999999 9999999999999999 7788777665 45778999
Q ss_pred EEecCCCCCCcceeeeeeccCc------------ccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCC
Q psy4596 246 KIQHDPHPEGFQEITLIRQEGE------------KLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGM 313 (439)
Q Consensus 246 ~v~r~~~~~~~~~v~l~~~~~~------------~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD 313 (439)
+|.|++.. .++.+...... ..|+.+... .......|++|..|.++|||+++| |++||
T Consensus 344 ~V~R~G~~---~~l~v~~~~~~~~~~~~~~~~~~~~g~~l~~~-------~~~~~~~Gv~V~~V~~~spA~~aG-L~~GD 412 (455)
T PRK10139 344 GLLRNGKP---LEVEVTLDTSTSSSASAEMITPALQGATLSDG-------QLKDGTKGIKIDEVVKGSPAAQAG-LQKDD 412 (455)
T ss_pred EEEECCEE---EEEEEEECCCCCcccccccccccccccEeccc-------ccccCCCceEEEEeCCCChHHHcC-CCCCC
Confidence 99998754 22322211110 012222210 001113589999999999999999 99999
Q ss_pred EEEEECCEEcCCCCHHHHHHHHhcCCCeEEEEEecCC
Q psy4596 314 RLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGF 350 (439)
Q Consensus 314 ~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~ 350 (439)
+|++|||+++. +++++.+.|++..+.+.|++.|+.
T Consensus 413 ~I~~Ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~g 447 (455)
T PRK10139 413 VIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGN 447 (455)
T ss_pred EEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECC
Confidence 99999999995 559999999886688999998864
No 6
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.71 E-value=2.1e-16 Score=159.97 Aligned_cols=174 Identities=28% Similarity=0.389 Sum_probs=128.8
Q ss_pred CCccEEEeeCCCCCCCCCCCCC-CcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHh--CCCCeEEE
Q psy4596 169 GPLGFSIIGGTDHSCIPFGQHK-PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALL--EPCPEILL 245 (439)
Q Consensus 169 ~~lG~~i~~~~~~~~~~~g~~~-~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~--~~~~~v~l 245 (439)
+.||+.+...++..+..+|++. .|++|..|.++|||+++| |++||+|++|||.++. ++.++...+. ..+..+.+
T Consensus 234 ~~lGi~~~~~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~--~~~~~~~~l~~~~~g~~v~l 310 (428)
T TIGR02037 234 GWLGVTIQEVTSDLAKSLGLEKQRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPIS--SFADLRRAIGTLKPGKKVTL 310 (428)
T ss_pred CcCceEeecCCHHHHHHcCCCCCCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEE
Confidence 4789998887766666666643 589999999999999999 9999999999999999 6666666554 45788999
Q ss_pred EEecCCCCCCcceeeeeecc-------CcccceeecCCccCC---CCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEE
Q psy4596 246 KIQHDPHPEGFQEITLIRQE-------GEKLGMHIKGGLRGQ---RGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315 (439)
Q Consensus 246 ~v~r~~~~~~~~~v~l~~~~-------~~~lG~~i~~~~~~~---~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~I 315 (439)
++.|++..... .+.+.... ...+|+.+..-.... .+.+ ....|++|..|.++|+|+++| |++||+|
T Consensus 311 ~v~R~g~~~~~-~v~l~~~~~~~~~~~~~~lGi~~~~l~~~~~~~~~l~--~~~~Gv~V~~V~~~SpA~~aG-L~~GDvI 386 (428)
T TIGR02037 311 GILRKGKEKTI-TVTLGASPEEQASSSNPFLGLTVANLSPEIRKELRLK--GDVKGVVVTKVVSGSPAARAG-LQPGDVI 386 (428)
T ss_pred EEEECCEEEEE-EEEECcCCCccccccccccceEEecCCHHHHHHcCCC--cCcCceEEEEeCCCCHHHHcC-CCCCCEE
Confidence 99998754221 12211111 123566664321111 1111 112589999999999999999 9999999
Q ss_pred EEECCEEcCCCCHHHHHHHHhc--CCCeEEEEEecCCc
Q psy4596 316 LEVNGMSLLGASHQEAVNTLRY--SGHQISLTVCKGFE 351 (439)
Q Consensus 316 l~VNg~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 351 (439)
++|||+++. +.+++.++|++ .++.+.|+|.|...
T Consensus 387 ~~Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g~ 422 (428)
T TIGR02037 387 LSVNQQPVS--SVAELRKVLDRAKKGGRVALLILRGGA 422 (428)
T ss_pred EEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 999999995 55889998886 46889999998643
No 7
>PRK10942 serine endoprotease; Provisional
Probab=99.67 E-value=1.6e-15 Score=154.15 Aligned_cols=168 Identities=21% Similarity=0.295 Sum_probs=123.2
Q ss_pred CCccEEEeeCCCCCCCCCCCC-CCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHh--CCCCeEEE
Q psy4596 169 GPLGFSIIGGTDHSCIPFGQH-KPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALL--EPCPEILL 245 (439)
Q Consensus 169 ~~lG~~i~~~~~~~~~~~g~~-~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~--~~~~~v~l 245 (439)
+.||+.+...+...+..++++ ..|++|..|.++|+|+++| |++||+|++|||+++. ++.++...+. ..+..+.+
T Consensus 288 g~lGv~~~~l~~~~a~~~~l~~~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l 364 (473)
T PRK10942 288 GELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTL 364 (473)
T ss_pred ceeeeEeeecCHHHHHhcCCCCCCceEEEEECCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEE
Confidence 467888777655444445554 3599999999999999999 9999999999999999 6777766664 35778999
Q ss_pred EEecCCCCCCcceeeeeeccC-------cccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEE
Q psy4596 246 KIQHDPHPEGFQEITLIRQEG-------EKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318 (439)
Q Consensus 246 ~v~r~~~~~~~~~v~l~~~~~-------~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~V 318 (439)
.|.|++..... .+.+..... ..+|+....-.. .....|++|.+|.++|+|+++| |++||+|++|
T Consensus 365 ~v~R~G~~~~v-~v~l~~~~~~~~~~~~~~lGl~g~~l~~-------~~~~~gvvV~~V~~~S~A~~aG-L~~GDvIv~V 435 (473)
T PRK10942 365 GLLRDGKPVNV-NVELQQSSQNQVDSSNIFNGIEGAELSN-------KGGDKGVVVDNVKPGTPAAQIG-LKKGDVIIGA 435 (473)
T ss_pred EEEECCeEEEE-EEEeCcCcccccccccccccceeeeccc-------ccCCCCeEEEEeCCCChHHHcC-CCCCCEEEEE
Confidence 99998754221 122211100 013332211000 0112489999999999999999 9999999999
Q ss_pred CCEEcCCCCHHHHHHHHhcCCCeEEEEEecCC
Q psy4596 319 NGMSLLGASHQEAVNTLRYSGHQISLTVCKGF 350 (439)
Q Consensus 319 Ng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~ 350 (439)
||+++. +.+++.+.+++.+..+.|+|.|+.
T Consensus 436 Ng~~V~--s~~dl~~~l~~~~~~v~l~V~R~g 465 (473)
T PRK10942 436 NQQPVK--NIAELRKILDSKPSVLALNIQRGD 465 (473)
T ss_pred CCEEcC--CHHHHHHHHHhCCCeEEEEEEECC
Confidence 999995 459999999987788999998864
No 8
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.59 E-value=3.7e-14 Score=144.05 Aligned_cols=141 Identities=21% Similarity=0.285 Sum_probs=105.0
Q ss_pred cEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHh--CCCCeEEEEEecCCCCCCcceeeeeecc----
Q psy4596 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALL--EPCPEILLKIQHDPHPEGFQEITLIRQE---- 265 (439)
Q Consensus 192 g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~--~~~~~v~l~v~r~~~~~~~~~v~l~~~~---- 265 (439)
..+|..|.++|||+++| |++||+|++|||+++. ++.+....+. ..+..+.+++.|++..... ++++....
T Consensus 127 ~~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~--~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~-~v~l~~~~~~~~ 202 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETP--DWDAVRLALVSKIGDESTTITVAPFGSDQRR-DKTLDLRHWAFE 202 (449)
T ss_pred CccccccCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhhccCCceEEEEEeCCccceE-EEEecccccccC
Confidence 35799999999999999 9999999999999999 5555554433 4567899999998865322 12221000
Q ss_pred ------CcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc-C
Q psy4596 266 ------GEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY-S 338 (439)
Q Consensus 266 ------~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~ 338 (439)
...+|+.- .....+.+|..|.++|||+++| |++||+|++|||+++. +++++.+.++. .
T Consensus 203 ~~~~~~~~~lGl~~------------~~~~~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~~~~ 267 (449)
T PRK10779 203 PDKQDPVSSLGIRP------------RGPQIEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVRDNP 267 (449)
T ss_pred ccccchhhcccccc------------cCCCcCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCC
Confidence 01133211 1112357899999999999999 9999999999999995 55888888876 5
Q ss_pred CCeEEEEEecCCc
Q psy4596 339 GHQISLTVCKGFE 351 (439)
Q Consensus 339 ~~~v~l~v~r~~~ 351 (439)
++.+.|++.|+..
T Consensus 268 ~~~v~l~v~R~g~ 280 (449)
T PRK10779 268 GKPLALEIERQGS 280 (449)
T ss_pred CCEEEEEEEECCE
Confidence 5789999988753
No 9
>KOG3605|consensus
Probab=99.54 E-value=1.6e-14 Score=143.28 Aligned_cols=163 Identities=29% Similarity=0.504 Sum_probs=129.9
Q ss_pred eeEEEEEecC-C-CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy4596 159 FLQDVVLPKS-G-PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLAL 236 (439)
Q Consensus 159 ~~~~v~l~~~-~-~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l 236 (439)
.-++|.|.|. | .||+.|...- +|.-.+-++|.....+|||+++|+|-.||+|++|||.++-++.......++
T Consensus 645 ~qKEVvv~K~kGEiLGVViVESG------WGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~I 718 (829)
T KOG3605|consen 645 NQKEVVLEKHKGEILGVVIVESG------WGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSII 718 (829)
T ss_pred ccceeeeecccCceeeEEEEecC------ccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHH
Confidence 4556777664 3 8898887531 222233588999999999999999999999999999999999988888788
Q ss_pred hCC--CCeEEEEEecCCCCCCcceeeeeec-cCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCC
Q psy4596 237 LEP--CPEILLKIQHDPHPEGFQEITLIRQ-EGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGM 313 (439)
Q Consensus 237 ~~~--~~~v~l~v~r~~~~~~~~~v~l~~~-~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD 313 (439)
+.. ...|.|+|.+.+.. .++.+.+. ....|||++..| +|-+...||.|++.| +|+|.
T Consensus 719 k~~KnQT~VkltiV~cpPV---~~V~I~RPd~kyQLGFSVQNG----------------iICSLlRGGIAERGG-VRVGH 778 (829)
T KOG3605|consen 719 KGLKNQTAVKLNIVSCPPV---TTVLIRRPDLRYQLGFSVQNG----------------IICSLLRGGIAERGG-VRVGH 778 (829)
T ss_pred hcccccceEEEEEecCCCc---eEEEeecccchhhccceeeCc----------------EeehhhcccchhccC-ceeee
Confidence 753 45688999988755 44554433 356799999764 367889999999999 99999
Q ss_pred EEEEECCEEcCCCCHHHHHHHHhcCCCeEEEEEe
Q psy4596 314 RLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 347 (439)
Q Consensus 314 ~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~ 347 (439)
||++|||++|....|+.+|++|..+=..|.++..
T Consensus 779 RIIEINgQSVVA~pHekIV~lLs~aVGEIhMKTM 812 (829)
T KOG3605|consen 779 RIIEINGQSVVATPHEKIVQLLSNAVGEIHMKTM 812 (829)
T ss_pred eEEEECCceEEeccHHHHHHHHHHhhhhhhhhcc
Confidence 9999999999999999999999986666666543
No 10
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.52 E-value=1.5e-13 Score=139.12 Aligned_cols=157 Identities=21% Similarity=0.228 Sum_probs=106.7
Q ss_pred cceeEEe------cCcccccCCCCEEEEECCeecCCCCHHHHHHHHhhcCCeEEEEEEeccccCccccccCCCCCCCCcc
Q psy4596 14 QAGVILA------AGEVVIHPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVT 87 (439)
Q Consensus 14 ~~Gi~vs------a~~~~gL~~GD~Il~VNG~~v~~~~~~~~v~~l~~~~~~v~L~V~R~~~~~~~~~~~~~~~~~~~~~ 87 (439)
..|++|. +|..+||++||+|++|||+++.++.+..........+..++|+|.|+.+...+....
T Consensus 256 ~~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l---------- 325 (428)
T TIGR02037 256 QRGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKGKEKTITVTL---------- 325 (428)
T ss_pred CCceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEE----------
Confidence 4688887 466778999999999999999976543322222346789999999954221111100
Q ss_pred ccCCCCCcCCCcccccccCccceeeeccccCCCCCCCCCCCCcccccCCCCCcccccccCcCCCCCCCCCceeEEEEEec
Q psy4596 88 QSMSSLDREDLDTDVFKQGQWSTVVTAHQRLDTGYGLPSNSTVAAHISSSLKPSILVTYNFFSPSVRSSSLFLQDVVLPK 167 (439)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 167 (439)
...+.. . .. ..
T Consensus 326 ----------------------------~~~~~~---~--~~------------------------------------~~ 336 (428)
T TIGR02037 326 ----------------------------GASPEE---Q--AS------------------------------------SS 336 (428)
T ss_pred ----------------------------CcCCCc---c--cc------------------------------------cc
Confidence 000000 0 00 00
Q ss_pred CCCccEEEeeCCCCCCCCCCCCC--CcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhC--CCCeE
Q psy4596 168 SGPLGFSIIGGTDHSCIPFGQHK--PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE--PCPEI 243 (439)
Q Consensus 168 ~~~lG~~i~~~~~~~~~~~g~~~--~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~--~~~~v 243 (439)
...+|+.+..........++.+. .|++|..|.++|+|+++| |++||+|++|||+++. ++.++...+.. .++.+
T Consensus 337 ~~~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~--s~~d~~~~l~~~~~g~~v 413 (428)
T TIGR02037 337 NPFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVS--SVAELRKVLDRAKKGGRV 413 (428)
T ss_pred ccccceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEE
Confidence 13568777765433322233332 589999999999999999 9999999999999999 77777777764 47889
Q ss_pred EEEEecCCC
Q psy4596 244 LLKIQHDPH 252 (439)
Q Consensus 244 ~l~v~r~~~ 252 (439)
.|+|.|++.
T Consensus 414 ~l~v~R~g~ 422 (428)
T TIGR02037 414 ALLILRGGA 422 (428)
T ss_pred EEEEEECCE
Confidence 999999864
No 11
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.51 E-value=3.7e-13 Score=135.44 Aligned_cols=135 Identities=19% Similarity=0.282 Sum_probs=105.3
Q ss_pred CCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCCCCeEEEEEecCCCCCCcceeeeeeccCccc
Q psy4596 190 KPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQEITLIRQEGEKL 269 (439)
Q Consensus 190 ~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~~~~v~l~~~~~~~l 269 (439)
..+.+|..|.++|||+++| |++||+|++|||.++. ++.+....+......+.+.+.|++... .+.+ .+
T Consensus 127 ~~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~--~~~dl~~~ia~~~~~v~~~I~r~g~~~---~l~v------~l 194 (420)
T TIGR00054 127 EVGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIP--GFKDVRQQIADIAGEPMVEILAERENW---TFEV------MK 194 (420)
T ss_pred CCCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhhcccceEEEEEecCce---Eecc------cc
Confidence 3478999999999999999 9999999999999999 677776665543377888888876541 1111 12
Q ss_pred ceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc-CCCeEEEEEec
Q psy4596 270 GMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY-SGHQISLTVCK 348 (439)
Q Consensus 270 G~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~r 348 (439)
++.. .. ...++.|.+|.++|||+++| |++||+|++|||+++. +++++...++. .++.+.|++.|
T Consensus 195 ~~~~--~~----------~~~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~--s~~dl~~~l~~~~~~~v~l~v~R 259 (420)
T TIGR00054 195 ELIP--RG----------PKIEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLR--SWTDFVSAVKENPGKSMDIKVER 259 (420)
T ss_pred ccee--cC----------CCcCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCceEEEEEE
Confidence 2211 10 12378999999999999999 9999999999999995 55899888886 55789999988
Q ss_pred CCc
Q psy4596 349 GFE 351 (439)
Q Consensus 349 ~~~ 351 (439)
+..
T Consensus 260 ~g~ 262 (420)
T TIGR00054 260 NGE 262 (420)
T ss_pred CCE
Confidence 754
No 12
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.46 E-value=4.2e-13 Score=103.30 Aligned_cols=80 Identities=40% Similarity=0.712 Sum_probs=69.7
Q ss_pred eeeeeccCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcC
Q psy4596 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYS 338 (439)
Q Consensus 259 v~l~~~~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~ 338 (439)
+.+.+.....|||.+.++.... ..++||.+|.++|+|+++| |++||+|++|||+++.++++.+++.+|+.+
T Consensus 2 v~l~k~~~~~lG~~l~~~~~~~--------~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~ 72 (81)
T PF00595_consen 2 VTLEKSGNGPLGFTLRGGSDND--------EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSA 72 (81)
T ss_dssp EEEEESTTSBSSEEEEEESTSS--------SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHS
T ss_pred EEEEeCCCCCcCEEEEecCCCC--------cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCC
Confidence 4455557788999999865221 2489999999999999999 999999999999999999999999999999
Q ss_pred CCeEEEEEe
Q psy4596 339 GHQISLTVC 347 (439)
Q Consensus 339 ~~~v~l~v~ 347 (439)
+..++|+|+
T Consensus 73 ~~~v~L~V~ 81 (81)
T PF00595_consen 73 SNPVTLTVQ 81 (81)
T ss_dssp TSEEEEEEE
T ss_pred CCcEEEEEC
Confidence 999999884
No 13
>PRK10942 serine endoprotease; Provisional
Probab=99.44 E-value=2.2e-12 Score=131.33 Aligned_cols=60 Identities=28% Similarity=0.379 Sum_probs=53.5
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCCCCeEEEEEecCCCC
Q psy4596 191 PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253 (439)
Q Consensus 191 ~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 253 (439)
.|++|..|.++|+|+++| |++||+|++|||+++. ++.++...+......+.|+|.|++..
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~--s~~dl~~~l~~~~~~v~l~V~R~g~~ 467 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVK--NIAELRKILDSKPSVLALNIQRGDSS 467 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCEE
Confidence 479999999999999999 9999999999999999 78888888877667888999998743
No 14
>PRK10139 serine endoprotease; Provisional
Probab=99.43 E-value=2.7e-12 Score=130.07 Aligned_cols=59 Identities=32% Similarity=0.361 Sum_probs=53.1
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCCCCeEEEEEecCCC
Q psy4596 191 PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPH 252 (439)
Q Consensus 191 ~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 252 (439)
.|++|..|.++|+|+++| |++||+|++|||+++. ++.++...+.+..+.+.|++.|++.
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~ 448 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGNE 448 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCE
Confidence 479999999999999999 9999999999999999 8888888887656788899999874
No 15
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.39 E-value=5.8e-12 Score=128.04 Aligned_cols=143 Identities=17% Similarity=0.243 Sum_probs=97.4
Q ss_pred cCcccccCCCCEEEEECCeecCCCCHHHHHHHHhhcCCeEEEEEEeccccCccccccCCCCCCCCccccCCCCCcCCCcc
Q psy4596 21 AGEVVIHPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQSMSSLDREDLDT 100 (439)
Q Consensus 21 a~~~~gL~~GD~Il~VNG~~v~~~~~~~~v~~l~~~~~~v~L~V~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (439)
+|+.+|||+||+|++|||+++.+++........+..+++++++|.|+++....+....
T Consensus 138 pA~kAGLk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~---------------------- 195 (449)
T PRK10779 138 IAAQAQIAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTLD---------------------- 195 (449)
T ss_pred HHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEec----------------------
Confidence 5778889999999999999999997655555555577889999999643221111000
Q ss_pred cccccCccceeeeccccCCCCCCCCCCCCcccccCCCCCcccccccCcCCCCCCCCCceeEEEEEecCCCccEEEeeCCC
Q psy4596 101 DVFKQGQWSTVVTAHQRLDTGYGLPSNSTVAAHISSSLKPSILVTYNFFSPSVRSSSLFLQDVVLPKSGPLGFSIIGGTD 180 (439)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~lG~~i~~~~~ 180 (439)
..+.... +.. . . ....+|+. ...+
T Consensus 196 ----------------~~~~~~~-~~~-~---------------------~---------------~~~~lGl~--~~~~ 219 (449)
T PRK10779 196 ----------------LRHWAFE-PDK-Q---------------------D---------------PVSSLGIR--PRGP 219 (449)
T ss_pred ----------------ccccccC-ccc-c---------------------c---------------hhhccccc--ccCC
Confidence 0000000 000 0 0 00235552 2111
Q ss_pred CCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhC-CCCeEEEEEecCCCC
Q psy4596 181 HSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE-PCPEILLKIQHDPHP 253 (439)
Q Consensus 181 ~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~~ 253 (439)
..+++|..|.++|||+++| |++||+|++|||+++. ++.+....+.. .++.+.+++.|++..
T Consensus 220 ---------~~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~~ 281 (449)
T PRK10779 220 ---------QIEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGKPLALEIERQGSP 281 (449)
T ss_pred ---------CcCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCEEEEEEEECCEE
Confidence 2257999999999999999 9999999999999999 78888777764 567899999998754
No 16
>KOG3550|consensus
Probab=99.35 E-value=3.5e-12 Score=104.45 Aligned_cols=81 Identities=35% Similarity=0.597 Sum_probs=73.7
Q ss_pred eeeeeeccCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc
Q psy4596 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY 337 (439)
Q Consensus 258 ~v~l~~~~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~ 337 (439)
.++.+++.+++|||.+.||+. -.++|||+.|.|||.|++.|.|+-||++|+|||.+|.+..|+.++++||+
T Consensus 92 rvvelpktdeglgfnvmggke---------qnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellka 162 (207)
T KOG3550|consen 92 RVVELPKTDEGLGFNVMGGKE---------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKA 162 (207)
T ss_pred ceeecCccccccceeeccCcc---------cCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHH
Confidence 456667778999999999874 35689999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEe
Q psy4596 338 SGHQISLTVC 347 (439)
Q Consensus 338 ~~~~v~l~v~ 347 (439)
+-+.|.|+|.
T Consensus 163 a~gsvklvvr 172 (207)
T KOG3550|consen 163 AVGSVKLVVR 172 (207)
T ss_pred hcCcEEEEEe
Confidence 9999999885
No 17
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.34 E-value=8e-12 Score=96.10 Aligned_cols=78 Identities=42% Similarity=0.801 Sum_probs=68.1
Q ss_pred EEEec-CC-CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCCC
Q psy4596 163 VVLPK-SG-PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPC 240 (439)
Q Consensus 163 v~l~~-~~-~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~ 240 (439)
|++.| .. +|||++.++.+.. ..++||..|.++|+|+++| |++||+|++|||.++.++++.+++..++.+.
T Consensus 2 v~l~k~~~~~lG~~l~~~~~~~-------~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~ 73 (81)
T PF00595_consen 2 VTLEKSGNGPLGFTLRGGSDND-------EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSAS 73 (81)
T ss_dssp EEEEESTTSBSSEEEEEESTSS-------SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHST
T ss_pred EEEEeCCCCCcCEEEEecCCCC-------cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCC
Confidence 56666 33 9999999976632 2479999999999999999 9999999999999999999999999999888
Q ss_pred CeEEEEEe
Q psy4596 241 PEILLKIQ 248 (439)
Q Consensus 241 ~~v~l~v~ 248 (439)
..+.|+|+
T Consensus 74 ~~v~L~V~ 81 (81)
T PF00595_consen 74 NPVTLTVQ 81 (81)
T ss_dssp SEEEEEEE
T ss_pred CcEEEEEC
Confidence 88888874
No 18
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.28 E-value=5.7e-11 Score=119.66 Aligned_cols=59 Identities=25% Similarity=0.440 Sum_probs=52.4
Q ss_pred cEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhC-CCCeEEEEEecCCCC
Q psy4596 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE-PCPEILLKIQHDPHP 253 (439)
Q Consensus 192 g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~~ 253 (439)
+++|..|.++|||+++| |++||+|++|||+++. ++.+....+.. .+..+.+++.|++..
T Consensus 204 g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~~ 263 (420)
T TIGR00054 204 EPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLR--SWTDFVSAVKENPGKSMDIKVERNGET 263 (420)
T ss_pred CcEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCceEEEEEECCEE
Confidence 68999999999999999 9999999999999999 78888877765 567789999998754
No 19
>KOG3605|consensus
Probab=99.26 E-value=2.2e-11 Score=121.21 Aligned_cols=119 Identities=28% Similarity=0.530 Sum_probs=99.5
Q ss_pred cCcccccCCCCEEEEECCeecCCCCHHHHHHHHhh--cCCeEEEEEEeccccCccccccCCCCCCCCccccCCCCCcCCC
Q psy4596 21 AGEVVIHPVGMRLLEVNGMSLLGASHQEAVNTLRY--SGHQISLTVCKGFERGDIERRASTSEGSRSVTQSMSSLDREDL 98 (439)
Q Consensus 21 a~~~~gL~~GD~Il~VNG~~v~~~~~~~~v~~l~~--~~~~v~L~V~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (439)
|+|.+.|-.||+|++|||.++.++....+..++|+ ....|+|.|.+
T Consensus 686 AarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~-------------------------------- 733 (829)
T KOG3605|consen 686 AARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVS-------------------------------- 733 (829)
T ss_pred hhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEEEEec--------------------------------
Confidence 68999999999999999999999999888888887 34568888876
Q ss_pred cccccccCccceeeeccccCCCCCCCCCCCCcccccCCCCCcccccccCcCCCCCCCCCceeEEEEEecCC---CccEEE
Q psy4596 99 DTDVFKQGQWSTVVTAHQRLDTGYGLPSNSTVAAHISSSLKPSILVTYNFFSPSVRSSSLFLQDVVLPKSG---PLGFSI 175 (439)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~---~lG~~i 175 (439)
++| +.+|.|.|.. .|||++
T Consensus 734 ---------------------------------------------------cpP-------V~~V~I~RPd~kyQLGFSV 755 (829)
T KOG3605|consen 734 ---------------------------------------------------CPP-------VTTVLIRRPDLRYQLGFSV 755 (829)
T ss_pred ---------------------------------------------------CCC-------ceEEEeecccchhhcccee
Confidence 111 2456666655 899999
Q ss_pred eeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCCCCeEEE
Q psy4596 176 IGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILL 245 (439)
Q Consensus 176 ~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l 245 (439)
..| +|.++..||.|++.| +|+|.||++|||++|-...|...+.+|..+-..|.+
T Consensus 756 QNG---------------iICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhM 809 (829)
T KOG3605|consen 756 QNG---------------IICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHM 809 (829)
T ss_pred eCc---------------EeehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhh
Confidence 863 688899999999999 999999999999999999999999998876444433
No 20
>KOG3551|consensus
Probab=99.09 E-value=2.5e-10 Score=107.46 Aligned_cols=83 Identities=37% Similarity=0.583 Sum_probs=75.0
Q ss_pred ceeeeeeccCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHh
Q psy4596 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLR 336 (439)
Q Consensus 257 ~~v~l~~~~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~ 336 (439)
+.+.+.+.+.++||++|+||.. +..+|.|++|.+|-+|++.+.|..||.||+|||.++.+.+|+|+|+.||
T Consensus 86 R~V~V~K~d~gGLGISIKGGre---------NkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLK 156 (506)
T KOG3551|consen 86 RRVRVVKQDAGGLGISIKGGRE---------NKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALK 156 (506)
T ss_pred ceeEEEEecCCcceEEeecCcc---------cCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHH
Confidence 4577777888999999999863 3558999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEec
Q psy4596 337 YSGHQISLTVCK 348 (439)
Q Consensus 337 ~~~~~v~l~v~r 348 (439)
++|..|.|.|.-
T Consensus 157 raGkeV~levKy 168 (506)
T KOG3551|consen 157 RAGKEVLLEVKY 168 (506)
T ss_pred hhCceeeeeeee
Confidence 999999888763
No 21
>KOG3549|consensus
Probab=99.08 E-value=1.3e-09 Score=101.43 Aligned_cols=86 Identities=38% Similarity=0.555 Sum_probs=77.7
Q ss_pred CCcceeeeeeccCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy4596 254 EGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVN 333 (439)
Q Consensus 254 ~~~~~v~l~~~~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ 333 (439)
...+++++.+..-++||++|+||. +...+++|++|...-+|+..|.|-+||.||+|||+.|....|+|+++
T Consensus 53 s~eRtVtirRQ~vGGlGLSIKGGa---------EHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~ 123 (505)
T KOG3549|consen 53 SKERTVTIRRQKVGGLGLSIKGGA---------EHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVN 123 (505)
T ss_pred CCceeEEEEeeecCcceeeecccc---------ccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHH
Confidence 334678888888999999999986 23568999999999999999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEEec
Q psy4596 334 TLRYSGHQISLTVCK 348 (439)
Q Consensus 334 ~l~~~~~~v~l~v~r 348 (439)
+||++|+.|+|+|..
T Consensus 124 iLRNAGdeVtlTV~~ 138 (505)
T KOG3549|consen 124 ILRNAGDEVTLTVKH 138 (505)
T ss_pred HHHhcCCEEEEEeHh
Confidence 999999999999963
No 22
>KOG3550|consensus
Probab=99.06 E-value=6.3e-10 Score=91.34 Aligned_cols=85 Identities=40% Similarity=0.670 Sum_probs=75.9
Q ss_pred eeEEEEEecCC-CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHh
Q psy4596 159 FLQDVVLPKSG-PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALL 237 (439)
Q Consensus 159 ~~~~v~l~~~~-~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~ 237 (439)
.++.|.|.|.. +|||.+.++++. ..++||+.|.||+.|++-|.|+.||.+++|||.++.+-.|..++.+|+
T Consensus 90 hprvvelpktdeglgfnvmggkeq--------nspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellk 161 (207)
T KOG3550|consen 90 HPRVVELPKTDEGLGFNVMGGKEQ--------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLK 161 (207)
T ss_pred CCceeecCccccccceeeccCccc--------CCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHH
Confidence 45668888866 999999999874 457999999999999998779999999999999999999999999999
Q ss_pred CCCCeEEEEEecCC
Q psy4596 238 EPCPEILLKIQHDP 251 (439)
Q Consensus 238 ~~~~~v~l~v~r~~ 251 (439)
.+...+.|+|+..+
T Consensus 162 aa~gsvklvvrytp 175 (207)
T KOG3550|consen 162 AAVGSVKLVVRYTP 175 (207)
T ss_pred HhcCcEEEEEecCh
Confidence 99899999988654
No 23
>KOG3553|consensus
Probab=99.05 E-value=3.4e-10 Score=86.16 Aligned_cols=80 Identities=28% Similarity=0.582 Sum_probs=67.8
Q ss_pred ccceeecCCccCCC-CCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCeEEEEE
Q psy4596 268 KLGMHIKGGLRGQR-GNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346 (439)
Q Consensus 268 ~lG~~i~~~~~~~~-g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v 346 (439)
.+||.|-||.+..+ .+++.-.+.||||..|..||||+.+| |+.+|.|++|||.+..-++|++++..|++ ...+.+.|
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k-~~vl~mLV 113 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITK-EEVLRMLV 113 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhH-hHHHHHHH
Confidence 47999999887654 45556667899999999999999999 99999999999999999999999999998 35556666
Q ss_pred ecC
Q psy4596 347 CKG 349 (439)
Q Consensus 347 ~r~ 349 (439)
.|.
T Consensus 114 aR~ 116 (124)
T KOG3553|consen 114 ARQ 116 (124)
T ss_pred Hhh
Confidence 554
No 24
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.03 E-value=1.7e-09 Score=80.42 Aligned_cols=67 Identities=31% Similarity=0.588 Sum_probs=58.7
Q ss_pred ccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCC-CeEEEEE
Q psy4596 268 KLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSG-HQISLTV 346 (439)
Q Consensus 268 ~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~l~v 346 (439)
.+||.+.... ..+++|.+|.+++||+.+| |++||+|++|||.++.++++.++.++|+... ..+.|++
T Consensus 2 ~~G~~~~~~~-----------~~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGT-----------EGGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCC-----------CCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 4788877643 1389999999999999999 9999999999999999999999999999854 7888876
No 25
>KOG3553|consensus
Probab=99.02 E-value=1.1e-10 Score=88.83 Aligned_cols=81 Identities=36% Similarity=0.593 Sum_probs=69.2
Q ss_pred CccEEEeeCCC--CCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy4596 170 PLGFSIIGGTD--HSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKI 247 (439)
Q Consensus 170 ~lG~~i~~~~~--~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v 247 (439)
.+||.|.++.| ....||+....|+||..|..||||+.+| ||.+|.|++|||.++.-++|.+++..+++ ...+.++|
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k-~~vl~mLV 113 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITK-EEVLRMLV 113 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhH-hHHHHHHH
Confidence 58999999864 5567888888899999999999999999 99999999999999999999999988876 44556666
Q ss_pred ecCCC
Q psy4596 248 QHDPH 252 (439)
Q Consensus 248 ~r~~~ 252 (439)
.|...
T Consensus 114 aR~~l 118 (124)
T KOG3553|consen 114 ARQSL 118 (124)
T ss_pred Hhhcc
Confidence 66543
No 26
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.02 E-value=3.7e-09 Score=81.22 Aligned_cols=78 Identities=45% Similarity=0.853 Sum_probs=64.8
Q ss_pred eeeeeccCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcC
Q psy4596 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYS 338 (439)
Q Consensus 259 v~l~~~~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~ 338 (439)
+.+.+.....|||.+.+.... ..+++|..|.++++|+++| |++||+|++|||.++..+++.++...++..
T Consensus 4 ~~l~~~~~~~~G~~~~~~~~~---------~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~ 73 (82)
T cd00992 4 VTLRKDPGGGLGFSLRGGKDS---------GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNS 73 (82)
T ss_pred EEEEeCCCCCcCEEEeCcccC---------CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhC
Confidence 344444467799998765321 2479999999999999999 999999999999999999999999999997
Q ss_pred CCeEEEEE
Q psy4596 339 GHQISLTV 346 (439)
Q Consensus 339 ~~~v~l~v 346 (439)
...+.|++
T Consensus 74 ~~~v~l~v 81 (82)
T cd00992 74 GDEVTLTV 81 (82)
T ss_pred CCeEEEEE
Confidence 77887776
No 27
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.01 E-value=2.8e-09 Score=82.02 Aligned_cols=72 Identities=33% Similarity=0.559 Sum_probs=59.3
Q ss_pred CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHh--CCCCeEEEEE
Q psy4596 170 PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALL--EPCPEILLKI 247 (439)
Q Consensus 170 ~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~--~~~~~v~l~v 247 (439)
+||+.+....+ ..|++|..|.++|||+++| |++||+|++|||.++. +..++...+. ..+..+.|++
T Consensus 2 ~lGv~~~~~~~---------~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v 69 (82)
T PF13180_consen 2 GLGVTVQNLSD---------TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTV 69 (82)
T ss_dssp E-SEEEEECSC---------SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEE
T ss_pred EECeEEEEccC---------CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEE
Confidence 57888877543 2379999999999999999 9999999999999998 7777777774 4688999999
Q ss_pred ecCCCC
Q psy4596 248 QHDPHP 253 (439)
Q Consensus 248 ~r~~~~ 253 (439)
.|++..
T Consensus 70 ~R~g~~ 75 (82)
T PF13180_consen 70 LRDGEE 75 (82)
T ss_dssp EETTEE
T ss_pred EECCEE
Confidence 998754
No 28
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.97 E-value=8.2e-09 Score=79.28 Aligned_cols=78 Identities=51% Similarity=0.788 Sum_probs=64.6
Q ss_pred EEEEEecC--CCccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhC
Q psy4596 161 QDVVLPKS--GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE 238 (439)
Q Consensus 161 ~~v~l~~~--~~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~ 238 (439)
+.+.+.+. +.|||.+....+. ..+++|..|.++|+|+++| |++||+|++|||.++.++++.++...+..
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~--------~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~ 72 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDS--------GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKN 72 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccC--------CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHh
Confidence 34566665 4999999876432 2379999999999999999 99999999999999999999999998887
Q ss_pred CCCeEEEEE
Q psy4596 239 PCPEILLKI 247 (439)
Q Consensus 239 ~~~~v~l~v 247 (439)
....+.|.+
T Consensus 73 ~~~~v~l~v 81 (82)
T cd00992 73 SGDEVTLTV 81 (82)
T ss_pred CCCeEEEEE
Confidence 666666665
No 29
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.94 E-value=1.6e-08 Score=78.02 Aligned_cols=80 Identities=44% Similarity=0.661 Sum_probs=66.0
Q ss_pred EEEEecCC-CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCCC
Q psy4596 162 DVVLPKSG-PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPC 240 (439)
Q Consensus 162 ~v~l~~~~-~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~ 240 (439)
.+.+.+.. .|||.+...... ..+++|..|.++|+|+++| |++||+|++|||..+.++++.+....+...+
T Consensus 4 ~~~~~~~~~~~G~~~~~~~~~--------~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~ 74 (85)
T smart00228 4 LVELEKGGGGLGFSLVGGKDE--------GGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAG 74 (85)
T ss_pred EEEEEECCCcccEEEECCCCC--------CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 45566654 899998765321 1479999999999999999 9999999999999999998988887777766
Q ss_pred CeEEEEEecC
Q psy4596 241 PEILLKIQHD 250 (439)
Q Consensus 241 ~~v~l~v~r~ 250 (439)
..+.|.+.|+
T Consensus 75 ~~~~l~i~r~ 84 (85)
T smart00228 75 GKVTLTVLRG 84 (85)
T ss_pred CeEEEEEEeC
Confidence 6888888875
No 30
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.92 E-value=1.4e-08 Score=78.38 Aligned_cols=79 Identities=39% Similarity=0.635 Sum_probs=65.4
Q ss_pred eeeeccCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCC
Q psy4596 260 TLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSG 339 (439)
Q Consensus 260 ~l~~~~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~ 339 (439)
.+.+.. ..||+.+...... ..+++|..|.++++|+++| |++||+|++|||+++.++++.+...+++..+
T Consensus 6 ~~~~~~-~~~G~~~~~~~~~---------~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~ 74 (85)
T smart00228 6 ELEKGG-GGLGFSLVGGKDE---------GGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAG 74 (85)
T ss_pred EEEECC-CcccEEEECCCCC---------CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 333343 6789988764310 1489999999999999999 9999999999999999999999999998877
Q ss_pred CeEEEEEecC
Q psy4596 340 HQISLTVCKG 349 (439)
Q Consensus 340 ~~v~l~v~r~ 349 (439)
..+.|++.|.
T Consensus 75 ~~~~l~i~r~ 84 (85)
T smart00228 75 GKVTLTVLRG 84 (85)
T ss_pred CeEEEEEEeC
Confidence 7899988764
No 31
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.88 E-value=1.8e-08 Score=74.83 Aligned_cols=67 Identities=42% Similarity=0.654 Sum_probs=57.3
Q ss_pred CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCC-CCeEEEEE
Q psy4596 170 PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEP-CPEILLKI 247 (439)
Q Consensus 170 ~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~l~v 247 (439)
+|||.+....+ .+++|..|.+++||+.+| |++||+|++|||.++.++++.++...++.. +..+.|++
T Consensus 2 ~~G~~~~~~~~----------~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE----------GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCC----------CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 57888887533 279999999999999999 999999999999999988889999888864 46777765
No 32
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.85 E-value=1.7e-08 Score=77.61 Aligned_cols=60 Identities=32% Similarity=0.501 Sum_probs=51.9
Q ss_pred CCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc--CCCeEEEEEecCCcc
Q psy4596 290 EGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY--SGHQISLTVCKGFER 352 (439)
Q Consensus 290 ~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 352 (439)
.+++|.+|.++|||+++| |++||+|++|||.++. +..++...|.. .+..+.|++.|....
T Consensus 14 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v~R~g~~ 75 (82)
T PF13180_consen 14 GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTVLRDGEE 75 (82)
T ss_dssp SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEEEETTEE
T ss_pred CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 489999999999999999 9999999999999994 55888888864 679999999997543
No 33
>KOG3551|consensus
Probab=98.84 E-value=9e-09 Score=97.15 Aligned_cols=82 Identities=44% Similarity=0.613 Sum_probs=73.1
Q ss_pred EEEEEecC--CCccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhC
Q psy4596 161 QDVVLPKS--GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE 238 (439)
Q Consensus 161 ~~v~l~~~--~~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~ 238 (439)
+.|.+.|. |+||++|.++.++ +.+|+|++|.+|-.|++++.|..||.|++|||.++.+.+|++++++|++
T Consensus 86 R~V~V~K~d~gGLGISIKGGreN--------kMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKr 157 (506)
T KOG3551|consen 86 RRVRVVKQDAGGLGISIKGGREN--------KMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKR 157 (506)
T ss_pred ceeEEEEecCCcceEEeecCccc--------CCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHh
Confidence 56666664 4999999999885 4589999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecC
Q psy4596 239 PCPEILLKIQHD 250 (439)
Q Consensus 239 ~~~~v~l~v~r~ 250 (439)
.++.|.|.|..-
T Consensus 158 aGkeV~levKy~ 169 (506)
T KOG3551|consen 158 AGKEVLLEVKYM 169 (506)
T ss_pred hCceeeeeeeee
Confidence 999998887643
No 34
>KOG3571|consensus
Probab=98.81 E-value=1.1e-08 Score=99.61 Aligned_cols=84 Identities=33% Similarity=0.504 Sum_probs=70.8
Q ss_pred ccCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc---CCC
Q psy4596 264 QEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY---SGH 340 (439)
Q Consensus 264 ~~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~---~~~ 340 (439)
..-.-|||+|+|... ...+.||||.+|.++|+.+.+||+.+||+||+||.++..+++.++||..|+. ...
T Consensus 258 e~vnfLGiSivgqsn-------~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~g 330 (626)
T KOG3571|consen 258 ETVNFLGISIVGQSN-------ARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPG 330 (626)
T ss_pred cccccceeEeecccC-------cCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCC
Confidence 333458999998432 1236699999999999999999999999999999999999999999999997 557
Q ss_pred eEEEEEecCCccCc
Q psy4596 341 QISLTVCKGFERGD 354 (439)
Q Consensus 341 ~v~l~v~r~~~~~~ 354 (439)
+++|+|.+.+++..
T Consensus 331 Pi~ltvAk~~DP~~ 344 (626)
T KOG3571|consen 331 PIKLTVAKCWDPNP 344 (626)
T ss_pred CeEEEEeeccCCCC
Confidence 89999998876433
No 35
>KOG3549|consensus
Probab=98.79 E-value=1.5e-08 Score=94.34 Aligned_cols=86 Identities=36% Similarity=0.509 Sum_probs=75.5
Q ss_pred eeEEEEEec--CCCccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy4596 159 FLQDVVLPK--SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLAL 236 (439)
Q Consensus 159 ~~~~v~l~~--~~~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l 236 (439)
..++|+|.+ -|+||++|.||.++ ..+++|++|..+-.|+..|.|-+||-|++|||+.|..+.|++++.+|
T Consensus 54 ~eRtVtirRQ~vGGlGLSIKGGaEH--------n~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iL 125 (505)
T KOG3549|consen 54 KERTVTIRRQKVGGLGLSIKGGAEH--------NLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNIL 125 (505)
T ss_pred CceeEEEEeeecCcceeeecccccc--------CccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHH
Confidence 345666655 46999999999876 34799999999999999999999999999999999999999999999
Q ss_pred hCCCCeEEEEEecCCC
Q psy4596 237 LEPCPEILLKIQHDPH 252 (439)
Q Consensus 237 ~~~~~~v~l~v~r~~~ 252 (439)
+++++.++|+|..-..
T Consensus 126 RNAGdeVtlTV~~lr~ 141 (505)
T KOG3549|consen 126 RNAGDEVTLTVKHLRA 141 (505)
T ss_pred HhcCCEEEEEeHhhhc
Confidence 9999999999975433
No 36
>KOG3606|consensus
Probab=98.78 E-value=5e-08 Score=88.01 Aligned_cols=103 Identities=24% Similarity=0.408 Sum_probs=80.6
Q ss_pred CCcceeeeeec-cCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHH
Q psy4596 254 EGFQEITLIRQ-EGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAV 332 (439)
Q Consensus 254 ~~~~~v~l~~~-~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~ 332 (439)
+..+.+.+.+. ....|||.|+.|.....-....+...||||+...|||.|+..|-|.++|.+|+|||+.|.+.+.+++.
T Consensus 157 EtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVT 236 (358)
T KOG3606|consen 157 ETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVT 236 (358)
T ss_pred hhhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHH
Confidence 33344444333 34568998888776544433444567999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEEEecCCccCccc
Q psy4596 333 NTLRYSGHQISLTVCKGFERGDIE 356 (439)
Q Consensus 333 ~~l~~~~~~v~l~v~r~~~~~~~~ 356 (439)
.|+-+....+.++|..........
T Consensus 237 DMMvANshNLIiTVkPANQRnnvv 260 (358)
T KOG3606|consen 237 DMMVANSHNLIITVKPANQRNNVV 260 (358)
T ss_pred HHHhhcccceEEEeccccccccee
Confidence 999998899999997765554433
No 37
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.76 E-value=5e-08 Score=75.49 Aligned_cols=59 Identities=31% Similarity=0.552 Sum_probs=53.7
Q ss_pred CCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc-CCCeEEEEEecC
Q psy4596 290 EGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY-SGHQISLTVCKG 349 (439)
Q Consensus 290 ~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~ 349 (439)
.+++|..|.+++||+++| |++||+|++|||.++.++++.++...++. .+..+.|++.|.
T Consensus 13 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 13 GGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred CeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 479999999999999999 99999999999999999988999998876 568899999875
No 38
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.75 E-value=1.3e-07 Score=73.14 Aligned_cols=69 Identities=26% Similarity=0.500 Sum_probs=57.8
Q ss_pred CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhC-CCCeEEEEEe
Q psy4596 170 PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE-PCPEILLKIQ 248 (439)
Q Consensus 170 ~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~ 248 (439)
+||+.+... ..+++|..|.++++|+++| |++||+|++|||.++.++++.++...+.. .+..+.+.+.
T Consensus 3 ~lG~~~~~~-----------~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~ 70 (85)
T cd00988 3 GIGLELKYD-----------DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLK 70 (85)
T ss_pred EEEEEEEEc-----------CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEE
Confidence 577777642 2369999999999999999 99999999999999997766888877764 4678899998
Q ss_pred cC
Q psy4596 249 HD 250 (439)
Q Consensus 249 r~ 250 (439)
|+
T Consensus 71 r~ 72 (85)
T cd00988 71 RG 72 (85)
T ss_pred cC
Confidence 87
No 39
>KOG1892|consensus
Probab=98.70 E-value=3.4e-08 Score=102.43 Aligned_cols=79 Identities=33% Similarity=0.617 Sum_probs=68.2
Q ss_pred cCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCeEEE
Q psy4596 265 EGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISL 344 (439)
Q Consensus 265 ~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l 344 (439)
.+.++|++|...+. .| ....||||++|.+|++|+.+|||+.||++|.|||+++.+++.+.+..++..+|..|+|
T Consensus 941 KnnGmGLSIVAAkG--aG----q~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV~l 1014 (1629)
T KOG1892|consen 941 KNNGMGLSIVAAKG--AG----QRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNVVHL 1014 (1629)
T ss_pred ccCCceEEEEeecc--CC----ccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCCeEEE
Confidence 34778888865321 11 1256999999999999999999999999999999999999999999999999999999
Q ss_pred EEecC
Q psy4596 345 TVCKG 349 (439)
Q Consensus 345 ~v~r~ 349 (439)
.|.+.
T Consensus 1015 eVaKq 1019 (1629)
T KOG1892|consen 1015 EVAKQ 1019 (1629)
T ss_pred ehhhh
Confidence 99865
No 40
>KOG1892|consensus
Probab=98.67 E-value=6.9e-08 Score=100.25 Aligned_cols=98 Identities=28% Similarity=0.498 Sum_probs=82.8
Q ss_pred CcCCCCCCCCCceeEEEEEecCCCccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCC
Q psy4596 147 NFFSPSVRSSSLFLQDVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSK 226 (439)
Q Consensus 147 ~~~~~~~~~~~~~~~~v~l~~~~~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~ 226 (439)
+.+..|.+. ..++..|+|.|.+++|++|...+. -|....||||.+|.+|++|+..|||..||.+++|||.++.+
T Consensus 922 n~l~q~~~~-~pei~~vtL~KnnGmGLSIVAAkG-----aGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiG 995 (1629)
T KOG1892|consen 922 NELAQPLRK-EPEIITVTLKKNNGMGLSIVAAKG-----AGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIG 995 (1629)
T ss_pred hhccchhhc-CCceEEEEEeccCCceEEEEeecc-----CCccccceEEEEeccCCccccccccccCceeeeecCccccc
Confidence 344444432 235788999999999999997654 24456699999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCeEEEEEecC
Q psy4596 227 VTHEEAVLALLEPCPEILLKIQHD 250 (439)
Q Consensus 227 ~~~~~~~~~l~~~~~~v~l~v~r~ 250 (439)
++.+.+..+|.+.+..|.|.|...
T Consensus 996 isQErAA~lmtrtg~vV~leVaKq 1019 (1629)
T KOG1892|consen 996 ISQERAARLMTRTGNVVHLEVAKQ 1019 (1629)
T ss_pred ccHHHHHHHHhccCCeEEEehhhh
Confidence 999999999999999999998754
No 41
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.66 E-value=1.6e-07 Score=71.57 Aligned_cols=60 Identities=27% Similarity=0.386 Sum_probs=52.2
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhC--CCCeEEEEEecCCCC
Q psy4596 191 PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE--PCPEILLKIQHDPHP 253 (439)
Q Consensus 191 ~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 253 (439)
.|++|..|.++|+|+++| |++||+|++|||.++. ++.++...+.. .+..+.+++.|++..
T Consensus 10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g~~ 71 (79)
T cd00991 10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPSTTK 71 (79)
T ss_pred CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECCEE
Confidence 389999999999999999 9999999999999999 77888777764 367889999987643
No 42
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.62 E-value=2.5e-07 Score=70.53 Aligned_cols=59 Identities=24% Similarity=0.366 Sum_probs=51.9
Q ss_pred CCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc--CCCeEEEEEecCC
Q psy4596 289 DEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY--SGHQISLTVCKGF 350 (439)
Q Consensus 289 ~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~ 350 (439)
..|++|..|.++|+|+++| |++||+|++|||.++. ++.++...|.. .+..+.|++.|..
T Consensus 9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g 69 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPST 69 (79)
T ss_pred CCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECC
Confidence 4589999999999999999 9999999999999996 55888888886 3688999998764
No 43
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.61 E-value=2.1e-07 Score=72.75 Aligned_cols=79 Identities=32% Similarity=0.462 Sum_probs=58.8
Q ss_pred CccEEEeeCCCCCCCCCCCC-CCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhC--CCCeEEEE
Q psy4596 170 PLGFSIIGGTDHSCIPFGQH-KPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE--PCPEILLK 246 (439)
Q Consensus 170 ~lG~~i~~~~~~~~~~~g~~-~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~--~~~~v~l~ 246 (439)
.+|+.+....+.....++.. ..|++|..|.++++|+++| |++||+|++|||.++. ++.++...+.. .+..+.+.
T Consensus 2 ~~G~~~~~~~~~~~~~~~~~~~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~--~~~~~~~~l~~~~~~~~i~l~ 78 (90)
T cd00987 2 WLGVTVQDLTPDLAEELGLKDTKGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVK--SVADLRRALAELKPGDKVTLT 78 (90)
T ss_pred ccceEEeECCHHHHHHcCCCCCCEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEE
Confidence 35777766553222111221 2489999999999999999 9999999999999999 66666666654 36788899
Q ss_pred EecCC
Q psy4596 247 IQHDP 251 (439)
Q Consensus 247 v~r~~ 251 (439)
+.|++
T Consensus 79 v~r~g 83 (90)
T cd00987 79 VLRGG 83 (90)
T ss_pred EEECC
Confidence 88876
No 44
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.57 E-value=4e-07 Score=69.29 Aligned_cols=59 Identities=36% Similarity=0.561 Sum_probs=50.3
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCC-CCeEEEEEecCCC
Q psy4596 191 PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEP-CPEILLKIQHDPH 252 (439)
Q Consensus 191 ~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 252 (439)
.+++|..|.++|+|+++| |++||+|++|||.++. ++.++...+... +..+.+++.|++.
T Consensus 12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~~~ 71 (79)
T cd00989 12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERNGE 71 (79)
T ss_pred cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEECCE
Confidence 358999999999999999 9999999999999999 777777777643 5678888888763
No 45
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.55 E-value=5.4e-07 Score=68.79 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=46.7
Q ss_pred cEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCCCCeEEEEEecCCC
Q psy4596 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPH 252 (439)
Q Consensus 192 g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 252 (439)
+++|..|.++|+|+.+| |++||+|++|||.++.+ +.++...+ ..+..+.+++.|++.
T Consensus 13 ~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g~ 69 (80)
T cd00990 13 LGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDDR 69 (80)
T ss_pred cEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECCE
Confidence 69999999999999999 99999999999999984 55444332 356788888888763
No 46
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.49 E-value=3.8e-07 Score=71.24 Aligned_cols=59 Identities=31% Similarity=0.522 Sum_probs=50.4
Q ss_pred CCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcC--CCeEEEEEecCC
Q psy4596 289 DEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYS--GHQISLTVCKGF 350 (439)
Q Consensus 289 ~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~ 350 (439)
..|++|..|.++++|+++| |++||.|++|||.++.++ .++.+.+... +..+.|++.|..
T Consensus 23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~v~r~g 83 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLTVLRGG 83 (90)
T ss_pred CCEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence 3489999999999999999 999999999999999654 6777777763 788999998753
No 47
>KOG3651|consensus
Probab=98.44 E-value=8.9e-07 Score=81.27 Aligned_cols=82 Identities=24% Similarity=0.468 Sum_probs=72.7
Q ss_pred eeeeeeccCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc
Q psy4596 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY 337 (439)
Q Consensus 258 ~v~l~~~~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~ 337 (439)
.+.+.+....-+|++|-||. ++...+||-.|..++||++.|+++.||.|+.|||.+|.+.+..++.++|+.
T Consensus 7 ~v~ltKD~~nliGISIGGGa---------pyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~ 77 (429)
T KOG3651|consen 7 TVELTKDEKNLIGISIGGGA---------PYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQV 77 (429)
T ss_pred cEEEeeccccceeEEecCCC---------CcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHH
Confidence 56677777778899998764 345578999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEec
Q psy4596 338 SGHQISLTVCK 348 (439)
Q Consensus 338 ~~~~v~l~v~r 348 (439)
+-+.|.+..-+
T Consensus 78 ~~~eV~IhyNK 88 (429)
T KOG3651|consen 78 SLNEVKIHYNK 88 (429)
T ss_pred hccceEEEehh
Confidence 99999998754
No 48
>KOG3606|consensus
Probab=98.42 E-value=5.3e-07 Score=81.49 Aligned_cols=93 Identities=37% Similarity=0.625 Sum_probs=78.0
Q ss_pred eeEEEEEecCC---CccEEEeeCCCCCCCCCCCCC-CcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHH
Q psy4596 159 FLQDVVLPKSG---PLGFSIIGGTDHSCIPFGQHK-PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVL 234 (439)
Q Consensus 159 ~~~~v~l~~~~---~lG~~i~~~~~~~~~~~g~~~-~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ 234 (439)
.-+.|.|+|-| +|||.|..+..-...+-|+.+ +|+||+...||+.|+..|.|.+.|.|++|||+.|.+.+..++..
T Consensus 158 tHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTD 237 (358)
T KOG3606|consen 158 THRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTD 237 (358)
T ss_pred hhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHH
Confidence 34568888876 899999998765555556644 59999999999999999988999999999999999999999999
Q ss_pred HHhCCCCeEEEEEecCC
Q psy4596 235 ALLEPCPEILLKIQHDP 251 (439)
Q Consensus 235 ~l~~~~~~v~l~v~r~~ 251 (439)
.|......+.++|....
T Consensus 238 MMvANshNLIiTVkPAN 254 (358)
T KOG3606|consen 238 MMVANSHNLIITVKPAN 254 (358)
T ss_pred HHhhcccceEEEecccc
Confidence 88877777777776543
No 49
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.41 E-value=8.5e-07 Score=67.69 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=46.4
Q ss_pred CCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCeEEEEEecCC
Q psy4596 290 EGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGF 350 (439)
Q Consensus 290 ~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~ 350 (439)
.+++|..|.++|+|+.+| |++||+|++|||.++.+ +.+++..+ ..+..+.|++.|..
T Consensus 12 ~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g 68 (80)
T cd00990 12 GLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDD 68 (80)
T ss_pred CcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECC
Confidence 369999999999999999 99999999999999965 34444433 25678899998754
No 50
>KOG3571|consensus
Probab=98.41 E-value=1.2e-06 Score=85.77 Aligned_cols=88 Identities=33% Similarity=0.482 Sum_probs=72.7
Q ss_pred CceeEEEEEecCC--CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHH
Q psy4596 157 SLFLQDVVLPKSG--PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVL 234 (439)
Q Consensus 157 ~~~~~~v~l~~~~--~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ 234 (439)
.+++.+|.|.-.. .||++|.+.+... +..||||..|.++|+.+..||+.+||.||+||.+.+.+++..+++.
T Consensus 247 slnIITV~LnMe~vnfLGiSivgqsn~r------gDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVr 320 (626)
T KOG3571|consen 247 SLNIITVTLNMETVNFLGISIVGQSNAR------GDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVR 320 (626)
T ss_pred ceeEEEEEecccccccceeEeecccCcC------CCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHH
Confidence 3456677776655 7999999965432 3569999999999999999999999999999999999999999999
Q ss_pred HHhC---CCCeEEEEEecC
Q psy4596 235 ALLE---PCPEILLKIQHD 250 (439)
Q Consensus 235 ~l~~---~~~~v~l~v~r~ 250 (439)
.|+. ...++.|+|...
T Consensus 321 vLREaV~~~gPi~ltvAk~ 339 (626)
T KOG3571|consen 321 VLREAVSRPGPIKLTVAKC 339 (626)
T ss_pred HHHHHhccCCCeEEEEeec
Confidence 8874 355688888653
No 51
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.40 E-value=1.7e-06 Score=65.87 Aligned_cols=58 Identities=28% Similarity=0.479 Sum_probs=49.8
Q ss_pred cEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhC--CCCeEEEEEecCCCC
Q psy4596 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE--PCPEILLKIQHDPHP 253 (439)
Q Consensus 192 g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 253 (439)
|++|..|.++|+|+. | |++||.|++|||.++. ++.++...+.. .+..+.+++.|++..
T Consensus 9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g~~ 68 (79)
T cd00986 9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREEKE 68 (79)
T ss_pred CEEEEEECCCCchhh-C-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 799999999999986 8 9999999999999999 77777777763 467889999987644
No 52
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.35 E-value=2.3e-06 Score=65.02 Aligned_cols=57 Identities=30% Similarity=0.500 Sum_probs=49.4
Q ss_pred CeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcC-CCeEEEEEecCC
Q psy4596 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYS-GHQISLTVCKGF 350 (439)
Q Consensus 291 gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~ 350 (439)
.++|..|.++|+|+.+| |++||.|++|||.++. ++.++...|+.. +..+.|++.|..
T Consensus 13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~~ 70 (79)
T cd00989 13 EPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERNG 70 (79)
T ss_pred CcEEEeECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEECC
Confidence 58899999999999999 9999999999999996 458888888764 678889988753
No 53
>KOG3552|consensus
Probab=98.34 E-value=6.5e-07 Score=93.07 Aligned_cols=57 Identities=28% Similarity=0.551 Sum_probs=54.8
Q ss_pred CeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCeEEEEEecC
Q psy4596 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349 (439)
Q Consensus 291 gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~ 349 (439)
+++|..|++|||+. |.|++||+||.|||.+|.+..++.+++++|++...|.|+|++.
T Consensus 76 PviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qP 132 (1298)
T KOG3552|consen 76 PVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQP 132 (1298)
T ss_pred ceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEecc
Confidence 79999999999986 8899999999999999999999999999999999999999985
No 54
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.30 E-value=3.8e-06 Score=63.99 Aligned_cols=57 Identities=25% Similarity=0.447 Sum_probs=48.8
Q ss_pred CCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc--CCCeEEEEEecCC
Q psy4596 290 EGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY--SGHQISLTVCKGF 350 (439)
Q Consensus 290 ~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~ 350 (439)
.|++|..|.++|+|+. | |++||.|++|||.++. +++++...|+. .+..+.|++.|..
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g 66 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREE 66 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECC
Confidence 3799999999999986 8 9999999999999996 45888888874 4678999998754
No 55
>KOG3552|consensus
Probab=98.30 E-value=6.9e-07 Score=92.89 Aligned_cols=78 Identities=28% Similarity=0.471 Sum_probs=69.3
Q ss_pred eeEEEEEecCCCccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhC
Q psy4596 159 FLQDVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE 238 (439)
Q Consensus 159 ~~~~v~l~~~~~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~ 238 (439)
+++.|.+.+...|||.+..+. +++|..|.+|||+ -|+|++||+|++|||.+|.++.+..++.+++.
T Consensus 55 ~pr~vq~~r~~~lGFgfvagr------------PviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRa 120 (1298)
T KOG3552|consen 55 EPRQVQLQRNASLGFGFVAGR------------PVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRA 120 (1298)
T ss_pred cchhhhhhccccccceeecCC------------ceEEEEecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHH
Confidence 367788888888888888752 4999999999998 57899999999999999999999999999999
Q ss_pred CCCeEEEEEecC
Q psy4596 239 PCPEILLKIQHD 250 (439)
Q Consensus 239 ~~~~v~l~v~r~ 250 (439)
+...|.|+|.+.
T Consensus 121 ce~sv~ltV~qP 132 (1298)
T KOG3552|consen 121 CESSVNLTVCQP 132 (1298)
T ss_pred HhhhcceEEecc
Confidence 999999999874
No 56
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.27 E-value=2.9e-06 Score=83.66 Aligned_cols=82 Identities=26% Similarity=0.368 Sum_probs=65.1
Q ss_pred CCccEEEeeCCCCCCCCCCCCC-CcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHh--CCCCeEEE
Q psy4596 169 GPLGFSIIGGTDHSCIPFGQHK-PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALL--EPCPEILL 245 (439)
Q Consensus 169 ~~lG~~i~~~~~~~~~~~g~~~-~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~--~~~~~v~l 245 (439)
+.||+.+..........++++. .|++|..|.++|||+++| |++||+|++|||+++. ++.++...+. +.+..+.+
T Consensus 255 ~~lGv~~~~~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l 331 (351)
T TIGR02038 255 GYIGVSGEDINSVVAQGLGLPDLRGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMV 331 (351)
T ss_pred eEeeeEEEECCHHHHHhcCCCccccceEeecCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEE
Confidence 3688887766544444455543 489999999999999999 9999999999999999 7777766665 45788999
Q ss_pred EEecCCCC
Q psy4596 246 KIQHDPHP 253 (439)
Q Consensus 246 ~v~r~~~~ 253 (439)
++.|++..
T Consensus 332 ~v~R~g~~ 339 (351)
T TIGR02038 332 TVLRQGKQ 339 (351)
T ss_pred EEEECCEE
Confidence 99998643
No 57
>KOG3651|consensus
Probab=98.25 E-value=3.9e-06 Score=77.16 Aligned_cols=80 Identities=31% Similarity=0.432 Sum_probs=69.0
Q ss_pred EEEEEecCC--CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhC
Q psy4596 161 QDVVLPKSG--PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE 238 (439)
Q Consensus 161 ~~v~l~~~~--~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~ 238 (439)
..|+|.|+. -+|++|.||.+. -+.+||..|..++||++.|+++.||.|++|||..|.+-+-.++...+..
T Consensus 6 ~~v~ltKD~~nliGISIGGGapy--------CPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~ 77 (429)
T KOG3651|consen 6 ETVELTKDEKNLIGISIGGGAPY--------CPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQV 77 (429)
T ss_pred CcEEEeeccccceeEEecCCCCc--------CCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHH
Confidence 457888865 779999998653 3578999999999999999999999999999999999999999988887
Q ss_pred CCCeEEEEEe
Q psy4596 239 PCPEILLKIQ 248 (439)
Q Consensus 239 ~~~~v~l~v~ 248 (439)
..+.+.+.+.
T Consensus 78 ~~~eV~IhyN 87 (429)
T KOG3651|consen 78 SLNEVKIHYN 87 (429)
T ss_pred hccceEEEeh
Confidence 7788877664
No 58
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.23 E-value=2e-05 Score=78.09 Aligned_cols=140 Identities=20% Similarity=0.207 Sum_probs=88.9
Q ss_pred EEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCCCCeEEEEEe-cCCCCCCcceeeeeeccCcccceee
Q psy4596 195 ISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQ-HDPHPEGFQEITLIRQEGEKLGMHI 273 (439)
Q Consensus 195 V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~-r~~~~~~~~~v~l~~~~~~~lG~~i 273 (439)
|..|.|+|+|+++| |++||+|++|||.++. +|.+....+. +..+.+.|. |++.. .++.+.+..+..||+..
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~--Dw~D~~~~l~--~e~l~L~V~~rdGe~---~~l~Ie~~~dedlG~~f 73 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPR--DLIDYQFLCA--DEELELEVLDANGES---HQIEIEKDLDEDLGLEF 73 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHhc--CCcEEEEEEcCCCeE---EEEEEecCCCCCCcEEe
Confidence 56789999999999 9999999999999999 8888776663 456888886 55532 45666777778899888
Q ss_pred cCCccCCCCCCCCCCCCC-eEEEEeCCCCchhhcCCCCCCCEE---EEECCEEcCCCCHHHHHHHHhcCCCeEEEEE
Q psy4596 274 KGGLRGQRGNPLDKNDEG-VFITKINSGGAAKRDGRLKVGMRL---LEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346 (439)
Q Consensus 274 ~~~~~~~~g~~~~~~~~g-i~I~~v~~~s~A~~~G~L~~GD~I---l~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v 346 (439)
....-. +...+.+... .||...-+ |.=..-= +|--|.= |.=|-..+++++.+++-.+++.-=.++-+.|
T Consensus 74 ~~~~~d--~~~~C~N~C~FCFidQlP~-gmR~sLY-~KDDDyRLSFL~GnyiTLTNl~~~d~~RI~~~~lspl~iSV 146 (433)
T TIGR03279 74 TTALFD--GLIQCNNRCPFCFIDQQPP-GKRESLY-LKDDDYRLSFLYGSYLTLTNLPPAEWQRIEQLRLSPLYVSV 146 (433)
T ss_pred ccccCC--cccccCCcCceEeccCCCC-CCcCcce-eccCcchhhhhccceeeecCCCHHHHHHHHHcCCCCEEEEE
Confidence 653311 1111111111 24444322 2211111 3333322 2337778888888888888777445555555
No 59
>PRK10898 serine endoprotease; Provisional
Probab=98.19 E-value=9.1e-06 Score=80.13 Aligned_cols=82 Identities=22% Similarity=0.297 Sum_probs=61.3
Q ss_pred CCccEEEeeCCCCCCCCCCCC-CCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHh--CCCCeEEE
Q psy4596 169 GPLGFSIIGGTDHSCIPFGQH-KPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALL--EPCPEILL 245 (439)
Q Consensus 169 ~~lG~~i~~~~~~~~~~~g~~-~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~--~~~~~v~l 245 (439)
+.||+.+..........++.. ..|++|..|.++|||+++| |++||+|++|||.++. ++.+....+. ..+..+.|
T Consensus 256 ~~lGi~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~~l~~~l~~~~~g~~v~l 332 (353)
T PRK10898 256 GYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAI--SALETMDQVAEIRPGSVIPV 332 (353)
T ss_pred cccceEEEECCHHHHHhcCCCCCCeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEE
Confidence 477887765533222222222 2589999999999999999 9999999999999999 6666655554 45778999
Q ss_pred EEecCCCC
Q psy4596 246 KIQHDPHP 253 (439)
Q Consensus 246 ~v~r~~~~ 253 (439)
++.|++..
T Consensus 333 ~v~R~g~~ 340 (353)
T PRK10898 333 VVMRDDKQ 340 (353)
T ss_pred EEEECCEE
Confidence 99998643
No 60
>KOG4371|consensus
Probab=98.17 E-value=6.5e-06 Score=86.89 Aligned_cols=165 Identities=25% Similarity=0.428 Sum_probs=125.2
Q ss_pred EEEecC-CCccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCCCC
Q psy4596 163 VVLPKS-GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCP 241 (439)
Q Consensus 163 v~l~~~-~~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~ 241 (439)
+.+.+. +.||..+..... -+.|....-.+.-..-. |+.||.++.+||+.+..--|.+++..++..++
T Consensus 1151 ~~~~r~~~~l~~~~a~~~~-----------~~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~ 1218 (1332)
T KOG4371|consen 1151 VELDRNEGSLGVQIASLSG-----------RVCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGD 1218 (1332)
T ss_pred ccCCCCCCCCCceeccCcc-----------ceehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccCc
Confidence 344443 478877765322 24444444333334445 99999999999999998889999988888889
Q ss_pred eEEEEEecCCCCC-------------CcceeeeeeccCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCC
Q psy4596 242 EILLKIQHDPHPE-------------GFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGR 308 (439)
Q Consensus 242 ~v~l~v~r~~~~~-------------~~~~v~l~~~~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~ 308 (439)
.+.|-|.|.+... .+..+.++.+...++|+.+.... ...++||..+...+.|...|.
T Consensus 1219 ~~~~~~~r~~~~~~d~~~~s~~~~~~~l~~~~~~~~p~~~~~~~~~~~~----------~s~~~~~~~~~~~~~a~~~~~ 1288 (1332)
T KOG4371|consen 1219 RVVLGVQRPPPAYSDQHHASSTSASAPLISVMLLKKPMATLGLSLAKRT----------MSDGIFIRNIAQDSAASSEGT 1288 (1332)
T ss_pred eEEEEeecCCcccccchhhhhhcccchhhhheeeecccccccccccccC----------cCCceeeeccccccccccccc
Confidence 9999999875421 12345556666777888776532 244899999999999999999
Q ss_pred CCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCeEEEEEecC
Q psy4596 309 LKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349 (439)
Q Consensus 309 L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~ 349 (439)
|+.||++...+|+++.+.+..+.++.++-.-+++.+++.|.
T Consensus 1289 ~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1289 LRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTRE 1329 (1332)
T ss_pred ccccceeeccCCccCCCCChHHHHHHhhhccCchhheehhh
Confidence 99999999999999999999999998887778888888764
No 61
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.15 E-value=1.2e-05 Score=80.31 Aligned_cols=77 Identities=27% Similarity=0.406 Sum_probs=60.0
Q ss_pred CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhC-CCCeEEEEEe
Q psy4596 170 PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE-PCPEILLKIQ 248 (439)
Q Consensus 170 ~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~ 248 (439)
++|+.+....... ....+++|..|.++|||+++| |++||+|++|||.++.++++.++...+.. .+..+.|+|.
T Consensus 86 GiG~~~~~~~~~~-----~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~ 159 (389)
T PLN00049 86 GVGLEVGYPTGSD-----GPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLR 159 (389)
T ss_pred EEEEEEEEccCCC-----CccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEE
Confidence 6777765422110 011269999999999999999 99999999999999998888887777763 5778999999
Q ss_pred cCCC
Q psy4596 249 HDPH 252 (439)
Q Consensus 249 r~~~ 252 (439)
|++.
T Consensus 160 r~g~ 163 (389)
T PLN00049 160 RGPE 163 (389)
T ss_pred ECCE
Confidence 8764
No 62
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.15 E-value=7.6e-06 Score=81.84 Aligned_cols=59 Identities=32% Similarity=0.521 Sum_probs=53.7
Q ss_pred CeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc-CCCeEEEEEecCC
Q psy4596 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY-SGHQISLTVCKGF 350 (439)
Q Consensus 291 gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~ 350 (439)
+++|..|.++|||+++| |++||+|++|||+++.+++..++..+|+. .+..+.|++.|..
T Consensus 103 g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g 162 (389)
T PLN00049 103 GLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP 162 (389)
T ss_pred cEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence 78999999999999999 99999999999999999988999888875 6678999998753
No 63
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.15 E-value=6.2e-06 Score=82.47 Aligned_cols=73 Identities=27% Similarity=0.415 Sum_probs=63.3
Q ss_pred cCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc-CCCeEE
Q psy4596 265 EGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY-SGHQIS 343 (439)
Q Consensus 265 ~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~ 343 (439)
.-.++|+.+.-.. ..++.|.++.+++||+++| |++||+|+.|||.++.+++.++++..|+. .|..|+
T Consensus 98 ~~~GiG~~i~~~~-----------~~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~ 165 (406)
T COG0793 98 EFGGIGIELQMED-----------IGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVT 165 (406)
T ss_pred cccceeEEEEEec-----------CCCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEE
Confidence 3456777775432 1479999999999999999 99999999999999999999999999997 678999
Q ss_pred EEEecC
Q psy4596 344 LTVCKG 349 (439)
Q Consensus 344 l~v~r~ 349 (439)
|++.|.
T Consensus 166 L~i~r~ 171 (406)
T COG0793 166 LTILRA 171 (406)
T ss_pred EEEEEc
Confidence 999996
No 64
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.12 E-value=1.6e-05 Score=78.08 Aligned_cols=72 Identities=22% Similarity=0.371 Sum_probs=58.7
Q ss_pred CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhC-CCCeEEEEEe
Q psy4596 170 PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE-PCPEILLKIQ 248 (439)
Q Consensus 170 ~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~ 248 (439)
++|+.+... ..+++|..|.++|||+++| |++||+|++|||.++.+++..++...+.. .+..+.|++.
T Consensus 52 ~lG~~~~~~-----------~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~ 119 (334)
T TIGR00225 52 GIGIQVGMD-----------DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEIL 119 (334)
T ss_pred EEEEEEEEE-----------CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEE
Confidence 678877642 1268999999999999999 99999999999999997766676666653 5778999999
Q ss_pred cCCCC
Q psy4596 249 HDPHP 253 (439)
Q Consensus 249 r~~~~ 253 (439)
|++..
T Consensus 120 R~g~~ 124 (334)
T TIGR00225 120 RAGKS 124 (334)
T ss_pred eCCCC
Confidence 88644
No 65
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.12 E-value=7.6e-06 Score=80.32 Aligned_cols=59 Identities=29% Similarity=0.494 Sum_probs=53.4
Q ss_pred CeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc-CCCeEEEEEecCC
Q psy4596 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY-SGHQISLTVCKGF 350 (439)
Q Consensus 291 gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~ 350 (439)
+++|..|.++|||+++| |++||+|++|||.++.+++..++...++. .+..+.|++.|..
T Consensus 63 ~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g 122 (334)
T TIGR00225 63 EIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG 122 (334)
T ss_pred EEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence 68999999999999999 99999999999999999887888888865 6788999998864
No 66
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.11 E-value=1.7e-05 Score=79.43 Aligned_cols=72 Identities=26% Similarity=0.439 Sum_probs=62.3
Q ss_pred CCccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHh-CCCCeEEEEE
Q psy4596 169 GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALL-EPCPEILLKI 247 (439)
Q Consensus 169 ~~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~-~~~~~v~l~v 247 (439)
+++|+.+.-... .++.|.++.+++||+++| |++||+|+.|||.++.+++..+++..++ ..+..++|++
T Consensus 100 ~GiG~~i~~~~~----------~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i 168 (406)
T COG0793 100 GGIGIELQMEDI----------GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTI 168 (406)
T ss_pred cceeEEEEEecC----------CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEE
Confidence 377888776431 368999999999999999 9999999999999999999988998887 4688999999
Q ss_pred ecCC
Q psy4596 248 QHDP 251 (439)
Q Consensus 248 ~r~~ 251 (439)
.|..
T Consensus 169 ~r~~ 172 (406)
T COG0793 169 LRAG 172 (406)
T ss_pred EEcC
Confidence 9973
No 67
>KOG0609|consensus
Probab=98.05 E-value=1.2e-05 Score=80.14 Aligned_cols=83 Identities=34% Similarity=0.546 Sum_probs=72.5
Q ss_pred eeeeeeccCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc
Q psy4596 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY 337 (439)
Q Consensus 258 ~v~l~~~~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~ 337 (439)
.+.+.+..+..+|.+++... ...+||..|..||.|++.|.|+.||.|++|||+++.+....++..+|+.
T Consensus 125 iv~i~k~~~eplG~Tik~~e-----------~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~ 193 (542)
T KOG0609|consen 125 IVRIVKNTGEPLGATIRVEE-----------DTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRN 193 (542)
T ss_pred EEEEeecCCCccceEEEecc-----------CCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHh
Confidence 45566677888999998643 2259999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCc
Q psy4596 338 SGHQISLTVCKGFE 351 (439)
Q Consensus 338 ~~~~v~l~v~r~~~ 351 (439)
+.+.+++++...+.
T Consensus 194 ~~G~itfkiiP~~~ 207 (542)
T KOG0609|consen 194 SRGSITFKIIPSYR 207 (542)
T ss_pred CCCcEEEEEccccc
Confidence 98999999987643
No 68
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=98.04 E-value=5.9e-05 Score=63.59 Aligned_cols=99 Identities=21% Similarity=0.301 Sum_probs=61.3
Q ss_pred CCccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCC-CCEEEEECCeeCCCCCHHHHHHHHh-CCCCeEEEE
Q psy4596 169 GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRM-GDRILAVNGRDVSKVTHEEAVLALL-EPCPEILLK 246 (439)
Q Consensus 169 ~~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~-GD~Il~VNg~~v~~~~~~~~~~~l~-~~~~~v~l~ 246 (439)
+.||+++.-.....+ ...+.-|..|.|+|||+.|| |++ .|.|+.+++..+.+. .++...+. ..++.+.|.
T Consensus 26 g~LG~sv~~~~~~~~-----~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~--~~l~~~v~~~~~~~l~L~ 97 (138)
T PF04495_consen 26 GLLGISVRFESFEGA-----EEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDE--DDLFELVEANENKPLQLY 97 (138)
T ss_dssp SSS-EEEEEEE-TTG-----CCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--ST--CHHHHHHHHTTTS-EEEE
T ss_pred CCCcEEEEEeccccc-----ccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCH--HHHHHHHHHcCCCcEEEE
Confidence 478999886543211 24478899999999999999 998 699999999999854 44444444 457889999
Q ss_pred EecCCCCCCcceeeeeecc----CcccceeecCC
Q psy4596 247 IQHDPHPEGFQEITLIRQE----GEKLGMHIKGG 276 (439)
Q Consensus 247 v~r~~~~~~~~~v~l~~~~----~~~lG~~i~~~ 276 (439)
|.... ....+++.+.+.. .+-||++|..|
T Consensus 98 Vyns~-~~~vR~V~i~P~~~WgG~GlLGc~ig~G 130 (138)
T PF04495_consen 98 VYNSK-TDSVREVTITPSRNWGGRGLLGCHIGYG 130 (138)
T ss_dssp EEETT-TTCEEEEEE---TTSSSSTSSSEEEE-S
T ss_pred EEECC-CCeEEEEEEEcCCCCCCCeeeeEEecce
Confidence 87653 3344567776653 33478877554
No 69
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.00 E-value=2.2e-05 Score=73.74 Aligned_cols=60 Identities=27% Similarity=0.288 Sum_probs=51.9
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhC--CCCeEEEEEecCCCC
Q psy4596 191 PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE--PCPEILLKIQHDPHP 253 (439)
Q Consensus 191 ~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 253 (439)
.|+.|..+.++++|+++| |++||+|++|||.++. ++.++...+.+ .+..+.|+|.|++..
T Consensus 191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G~~ 252 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDGQR 252 (259)
T ss_pred eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECCEE
Confidence 489999999999999999 9999999999999999 66666666553 567899999998754
No 70
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.95 E-value=0.00013 Score=72.00 Aligned_cols=78 Identities=18% Similarity=0.359 Sum_probs=57.7
Q ss_pred cEEEEEEC--------CCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhC-CCCeEEEEEecCCCCCCcceeeee
Q psy4596 192 GIFISHIV--------PGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE-PCPEILLKIQHDPHPEGFQEITLI 262 (439)
Q Consensus 192 g~~V~~V~--------~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~~~~~~~v~l~ 262 (439)
|++|.... .++||+.+| |++||.|++|||.++. ++.++...+.. .+..+.|++.|++.. ..+.+.
T Consensus 106 GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~--s~~DL~~iL~~~~g~~V~LtV~R~Ge~---~tv~V~ 179 (402)
T TIGR02860 106 GVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIK--NMDDLANLINKAGGEKLTLTIERGGKI---IETVIK 179 (402)
T ss_pred EEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCeEEEEEEECCEE---EEEEEE
Confidence 67775542 258999999 9999999999999999 88888877765 367899999998754 233332
Q ss_pred e-----ccCcccceeecC
Q psy4596 263 R-----QEGEKLGMHIKG 275 (439)
Q Consensus 263 ~-----~~~~~lG~~i~~ 275 (439)
+ .....+|+.++.
T Consensus 180 Pv~~~~d~~ykLGl~VrD 197 (402)
T TIGR02860 180 PVKDKEEGRYRIGLYIRD 197 (402)
T ss_pred EeeeCCCCCEEEEEEEEc
Confidence 1 233468887765
No 71
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.92 E-value=5.1e-05 Score=80.00 Aligned_cols=70 Identities=27% Similarity=0.351 Sum_probs=55.6
Q ss_pred CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhc-CCCCCCCEEEEEC--Ce---eCCCCCHHHHHHHHhC-CCCe
Q psy4596 170 PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALS-GKLRMGDRILAVN--GR---DVSKVTHEEAVLALLE-PCPE 242 (439)
Q Consensus 170 ~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~-G~L~~GD~Il~VN--g~---~v~~~~~~~~~~~l~~-~~~~ 242 (439)
++|+.+.... .+++|..|.|||||+++ | |++||+|++|| |. ++.++...+++..|+. .+..
T Consensus 245 GIGa~l~~~~-----------~~~~V~~vipGsPA~ka~g-Lk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~ 312 (667)
T PRK11186 245 GIGAVLQMDD-----------DYTVINSLVAGGPAAKSKK-LSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSK 312 (667)
T ss_pred EEEEEEEEeC-----------CeEEEEEccCCChHHHhCC-CCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCE
Confidence 6677765421 25899999999999998 7 99999999999 43 5567778888888874 5788
Q ss_pred EEEEEecCC
Q psy4596 243 ILLKIQHDP 251 (439)
Q Consensus 243 v~l~v~r~~ 251 (439)
|.|+|.|.+
T Consensus 313 V~LtV~r~~ 321 (667)
T PRK11186 313 VRLEILPAG 321 (667)
T ss_pred EEEEEEeCC
Confidence 999998843
No 72
>KOG4371|consensus
Probab=97.92 E-value=2.5e-05 Score=82.65 Aligned_cols=142 Identities=30% Similarity=0.402 Sum_probs=98.0
Q ss_pred cCCCCEEEEECCeecCCCCHHHHHHHHhhcCCeEEEEEEeccccCccccccCCCCCCCCccccCCCCCcCCCcccccccC
Q psy4596 27 HPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQSMSSLDREDLDTDVFKQG 106 (439)
Q Consensus 27 L~~GD~Il~VNG~~v~~~~~~~~v~~l~~~~~~v~L~V~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (439)
|+.||.++.|||+-+++.-|.+|+..++..++.|.|-|.|+. ..+-.+. .
T Consensus 1187 ~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~d~~----------------------------~ 1236 (1332)
T KOG4371|consen 1187 IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPP--PAYSDQH----------------------------H 1236 (1332)
T ss_pred cchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCC--cccccch----------------------------h
Confidence 789999999999999999999999999999999999999942 0000000 0
Q ss_pred ccceeeeccccCCCCCCCCCCCCcccccCCCCCcccccccCcCCCCCCCCCceeEEEEEecCC-CccEEEeeCCCCCCCC
Q psy4596 107 QWSTVVTAHQRLDTGYGLPSNSTVAAHISSSLKPSILVTYNFFSPSVRSSSLFLQDVVLPKSG-PLGFSIIGGTDHSCIP 185 (439)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~-~lG~~i~~~~~~~~~~ 185 (439)
..++ .. ..| ......|.+.- .+|+.+.....
T Consensus 1237 ~s~~------------------------~~-------------~~~------l~~~~~~~~p~~~~~~~~~~~~~----- 1268 (1332)
T KOG4371|consen 1237 ASST------------------------SA-------------SAP------LISVMLLKKPMATLGLSLAKRTM----- 1268 (1332)
T ss_pred hhhh------------------------cc-------------cch------hhhheeeecccccccccccccCc-----
Confidence 0000 00 000 11112233333 77887765432
Q ss_pred CCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCCCCeEEEEEecC
Q psy4596 186 FGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHD 250 (439)
Q Consensus 186 ~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~ 250 (439)
..|++|..+...+.|...|++|+||+++..+|+++...........++-.-+.+.+++.|.
T Consensus 1269 ----s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1269 ----SDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTRE 1329 (1332)
T ss_pred ----CCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhheehhh
Confidence 3479999999988898889999999999999999998877666555554455566666553
No 73
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.91 E-value=2.4e-05 Score=82.49 Aligned_cols=58 Identities=21% Similarity=0.411 Sum_probs=51.7
Q ss_pred CeEEEEeCCCCchhhc-CCCCCCCEEEEECC-----EEcCCCCHHHHHHHHhc-CCCeEEEEEecC
Q psy4596 291 GVFITKINSGGAAKRD-GRLKVGMRLLEVNG-----MSLLGASHQEAVNTLRY-SGHQISLTVCKG 349 (439)
Q Consensus 291 gi~I~~v~~~s~A~~~-G~L~~GD~Il~VNg-----~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~ 349 (439)
+++|.+|.+||||+++ | |++||+|++||+ .++.+++.++++.+|+. .|..|.|+|.|.
T Consensus 256 ~~~V~~vipGsPA~ka~g-Lk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 256 YTVINSLVAGGPAAKSKK-LSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred eEEEEEccCCChHHHhCC-CCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 6899999999999998 6 999999999994 46778999999999997 678899999874
No 74
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.90 E-value=2.7e-05 Score=76.83 Aligned_cols=58 Identities=24% Similarity=0.453 Sum_probs=51.1
Q ss_pred CCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc--CCCeEEEEEecCC
Q psy4596 290 EGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY--SGHQISLTVCKGF 350 (439)
Q Consensus 290 ~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~ 350 (439)
.|++|..|.++|||+++| |++||+|++|||+++. ++.++.+.++. .++.+.|++.|..
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~g 337 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMVTVLRQG 337 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 489999999999999999 9999999999999995 45888777764 6789999999864
No 75
>KOG1421|consensus
Probab=97.90 E-value=0.00014 Score=74.16 Aligned_cols=132 Identities=21% Similarity=0.215 Sum_probs=91.0
Q ss_pred EEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhC-CCCeEEEEEecCCCCCCcceeeeeeccCccc--
Q psy4596 193 IFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE-PCPEILLKIQHDPHPEGFQEITLIRQEGEKL-- 269 (439)
Q Consensus 193 ~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~~~~~~~v~l~~~~~~~l-- 269 (439)
.+|..|.++|+|.+. |++||.+++||+.-+. +...+.+.|-+ .++.+.|+|.|.+.. .++.+...+-...
T Consensus 305 LvV~~vL~~gpa~k~--Le~GDillavN~t~l~--df~~l~~iLDegvgk~l~LtI~Rggqe---lel~vtvqdlh~itp 377 (955)
T KOG1421|consen 305 LVVETVLPEGPAEKK--LEPGDILLAVNSTCLN--DFEALEQILDEGVGKNLELTIQRGGQE---LELTVTVQDLHGITP 377 (955)
T ss_pred EEEEEeccCCchhhc--cCCCcEEEEEcceehH--HHHHHHHHHhhccCceEEEEEEeCCEE---EEEEEEeccccCCCC
Confidence 578899999999986 9999999999988887 56666666654 689999999999864 3333332222211
Q ss_pred --ceeecCCccC-----CCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc
Q psy4596 270 --GMHIKGGLRG-----QRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY 337 (439)
Q Consensus 270 --G~~i~~~~~~-----~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~ 337 (439)
-+.++|..-. ..-....+ ..|+||++-. ++++...+ +. |-.|.+||+.++-++ +.++..++.
T Consensus 378 ~R~levcGav~hdlsyq~ar~y~lP-~~GvyVa~~~-gsf~~~~~-~y-~~ii~~vanK~tPdL--daFidvlk~ 446 (955)
T KOG1421|consen 378 DRFLEVCGAVFHDLSYQLARLYALP-VEGVYVASPG-GSFRHRGP-RY-GQIIDSVANKPTPDL--DAFIDVLKE 446 (955)
T ss_pred ceEEEEcceEecCCCHHHHhhcccc-cCcEEEccCC-CCccccCC-cc-eEEEEeecCCcCCCH--HHHHHHHHh
Confidence 1223332111 01111111 2399999877 88887777 66 888889999999544 888888887
No 76
>PRK10898 serine endoprotease; Provisional
Probab=97.87 E-value=4.9e-05 Score=74.99 Aligned_cols=58 Identities=19% Similarity=0.417 Sum_probs=49.9
Q ss_pred CCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc--CCCeEEEEEecCC
Q psy4596 290 EGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY--SGHQISLTVCKGF 350 (439)
Q Consensus 290 ~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~ 350 (439)
.|++|..|.++|||+++| |++||+|++|||+++.+ ..++.+.|.. .+..+.|++.|..
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~~l~~~l~~~~~g~~v~l~v~R~g 338 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDD 338 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence 589999999999999999 99999999999999954 4666666654 6688999999864
No 77
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.84 E-value=4.2e-05 Score=71.78 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=51.3
Q ss_pred CCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc--CCCeEEEEEecCCc
Q psy4596 290 EGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY--SGHQISLTVCKGFE 351 (439)
Q Consensus 290 ~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 351 (439)
.|+.|..+.++++|+++| |++||+|++|||+++.++ +++.+++.. .+..+.|+|.|+..
T Consensus 191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~~~v~l~V~R~G~ 251 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDP--EQAFQALQMLREETNLTLTVERDGQ 251 (259)
T ss_pred eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCeEEEEEEECCE
Confidence 489999999999999999 999999999999999654 778777776 44789999998753
No 78
>KOG3834|consensus
Probab=97.82 E-value=0.00012 Score=70.89 Aligned_cols=141 Identities=14% Similarity=0.238 Sum_probs=98.0
Q ss_pred cEEEEEECCCChhhhcCCCCC-CCEEEEECCeeCCCCCHHHHHH-HHhCCCCeEEEEEecCCCCCCcceeeeeeccCcc-
Q psy4596 192 GIFISHIVPGGVAALSGKLRM-GDRILAVNGRDVSKVTHEEAVL-ALLEPCPEILLKIQHDPHPEGFQEITLIRQEGEK- 268 (439)
Q Consensus 192 g~~V~~V~~~s~A~~~G~L~~-GD~Il~VNg~~v~~~~~~~~~~-~l~~~~~~v~l~v~r~~~~~~~~~v~l~~~~~~~- 268 (439)
|.-|.+|..+|+|.++| |.+ -|.|++|||..+. ...+..+ .++.....|.|+|.... ....+++.+.....++
T Consensus 16 g~hvlkVqedSpa~~ag-lepffdFIvSI~g~rL~--~dnd~Lk~llk~~sekVkltv~n~k-t~~~R~v~I~ps~~wgg 91 (462)
T KOG3834|consen 16 GYHVLKVQEDSPAHKAG-LEPFFDFIVSINGIRLN--KDNDTLKALLKANSEKVKLTVYNSK-TQEVRIVEIVPSNNWGG 91 (462)
T ss_pred eEEEEEeecCChHHhcC-cchhhhhhheeCccccc--CchHHHHHHHHhcccceEEEEEecc-cceeEEEEecccccccc
Confidence 67788999999999999 776 5999999999998 4444444 44444444888887543 3334556666666677
Q ss_pred --cceeecCCccCCCCCCCCCCCCCe-EEEEeCCCCchhhcCCCC-CCCEEEEE-CCEEcCCCCHHHHHHHHhc-CCCeE
Q psy4596 269 --LGMHIKGGLRGQRGNPLDKNDEGV-FITKINSGGAAKRDGRLK-VGMRLLEV-NGMSLLGASHQEAVNTLRY-SGHQI 342 (439)
Q Consensus 269 --lG~~i~~~~~~~~g~~~~~~~~gi-~I~~v~~~s~A~~~G~L~-~GD~Il~V-Ng~~v~~~~~~~~~~~l~~-~~~~v 342 (439)
||++|+=..... ....+ -|-+|.+++||+++| |+ -+|.|+-+ |... -..++...+|.. -++++
T Consensus 92 qllGvsvrFcsf~~-------A~~~vwHvl~V~p~SPaalAg-l~~~~DYivG~~~~~~---~~~eDl~~lIeshe~kpL 160 (462)
T KOG3834|consen 92 QLLGVSVRFCSFDG-------AVESVWHVLSVEPNSPAALAG-LRPYTDYIVGIWDAVM---HEEEDLFTLIESHEGKPL 160 (462)
T ss_pred cccceEEEeccCcc-------chhheeeeeecCCCCHHHhcc-cccccceEecchhhhc---cchHHHHHHHHhccCCCc
Confidence 898886432100 01122 377999999999999 88 89999988 5432 344666666665 55777
Q ss_pred EEEEe
Q psy4596 343 SLTVC 347 (439)
Q Consensus 343 ~l~v~ 347 (439)
.|.|.
T Consensus 161 klyVY 165 (462)
T KOG3834|consen 161 KLYVY 165 (462)
T ss_pred ceeEe
Confidence 77765
No 79
>KOG3542|consensus
Probab=97.79 E-value=3.1e-05 Score=78.47 Aligned_cols=74 Identities=32% Similarity=0.530 Sum_probs=62.2
Q ss_pred ccCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCeEE
Q psy4596 264 QEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQIS 343 (439)
Q Consensus 264 ~~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~ 343 (439)
.....+-|.+.||.. ...||||..|.||+.|+++| |+-||+|++|||++..+++...+.++|+++ -.++
T Consensus 545 sre~pl~f~L~GGsE---------kGfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn-thLt 613 (1283)
T KOG3542|consen 545 SREDPLMFRLVGGSE---------KGFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN-THLT 613 (1283)
T ss_pred cccCCceeEeccCcc---------ccceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC-ceEE
Confidence 345567888888752 34589999999999999999 999999999999999999999999999985 4566
Q ss_pred EEEec
Q psy4596 344 LTVCK 348 (439)
Q Consensus 344 l~v~r 348 (439)
|+|..
T Consensus 614 ltvKt 618 (1283)
T KOG3542|consen 614 LTVKT 618 (1283)
T ss_pred EEEec
Confidence 66653
No 80
>KOG3542|consensus
Probab=97.74 E-value=5.9e-05 Score=76.51 Aligned_cols=80 Identities=34% Similarity=0.636 Sum_probs=67.3
Q ss_pred eeEEEEEecC---CCccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy4596 159 FLQDVVLPKS---GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLA 235 (439)
Q Consensus 159 ~~~~v~l~~~---~~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~ 235 (439)
..+.|+|.|. ..+-|.+.||.+. ..|+||..|.|++.|+++| |+.||.|++|||+...+++...+..+
T Consensus 535 K~RqviLtk~sre~pl~f~L~GGsEk--------GfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~ei 605 (1283)
T KOG3542|consen 535 KPRQVILTKASREDPLMFRLVGGSEK--------GFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEI 605 (1283)
T ss_pred cceeEEEecccccCCceeEeccCccc--------cceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHH
Confidence 4577888873 3899999998763 3489999999999999999 99999999999999999999999987
Q ss_pred HhCCCCeEEEEEe
Q psy4596 236 LLEPCPEILLKIQ 248 (439)
Q Consensus 236 l~~~~~~v~l~v~ 248 (439)
|+. ...+.|+|.
T Consensus 606 Lrn-nthLtltvK 617 (1283)
T KOG3542|consen 606 LRN-NTHLTLTVK 617 (1283)
T ss_pred hcC-CceEEEEEe
Confidence 764 455666665
No 81
>KOG4407|consensus
Probab=97.57 E-value=9.6e-05 Score=79.82 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=84.7
Q ss_pred EEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCCCCeEEEEEecCCCCCCcceeeeeeccCccccee
Q psy4596 193 IFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQEITLIRQEGEKLGMH 272 (439)
Q Consensus 193 ~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~~~~v~l~~~~~~~lG~~ 272 (439)
+++..+..++++..+| +..||.|..|||..+.+.+ ......++.
T Consensus 98 ~~~~Q~~s~~~~~nsG-~~s~~~v~~itG~e~~~~T-S~~~~~vk~---------------------------------- 141 (1973)
T KOG4407|consen 98 TNWPQEASSAAGSNSG-SSSSVGVAGITGLEPTSPT-SLPPYQVKA---------------------------------- 141 (1973)
T ss_pred cccchhcccCcccccC-cccccceeeecccccCCCc-cccHHHHhh----------------------------------
Confidence 5677777888899999 9999999999999887544 111111110
Q ss_pred ecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCeEEEEEecC
Q psy4596 273 IKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349 (439)
Q Consensus 273 i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~ 349 (439)
-.-+||.+|.++++|..+. ||.||+++.||.+++.++.+.+++.++++....+.|.|...
T Consensus 142 ----------------~eT~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P~ 201 (1973)
T KOG4407|consen 142 ----------------METIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVPK 201 (1973)
T ss_pred ----------------hhhhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCCCCCCceeccc
Confidence 1148999999999999998 99999999999999999999999999999888888877643
No 82
>KOG0606|consensus
Probab=97.56 E-value=0.00015 Score=78.11 Aligned_cols=83 Identities=25% Similarity=0.380 Sum_probs=69.4
Q ss_pred eeccCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCe
Q psy4596 262 IRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ 341 (439)
Q Consensus 262 ~~~~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~ 341 (439)
+.....+|||+++. .+.+.|... .+...+.|.+|.++|||..+| |++||.|+.|||+++.++.|.+++++|-+.+..
T Consensus 632 i~~~~~~yGft~~a-irVy~Gd~d-~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~ 708 (1205)
T KOG0606|consen 632 IHFSGKKYGFTLRA-IRVYMGDKD-VYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSGNK 708 (1205)
T ss_pred eeccccccCceeee-EEEecCCcc-cceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcCCe
Confidence 34456779988754 355566543 345578899999999999999 999999999999999999999999999999999
Q ss_pred EEEEEe
Q psy4596 342 ISLTVC 347 (439)
Q Consensus 342 v~l~v~ 347 (439)
+.+.+.
T Consensus 709 v~~~tt 714 (1205)
T KOG0606|consen 709 VTLRTT 714 (1205)
T ss_pred eEEEee
Confidence 988775
No 83
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=97.43 E-value=0.00097 Score=51.43 Aligned_cols=59 Identities=34% Similarity=0.546 Sum_probs=39.3
Q ss_pred cEEEEEECCC--------ChhhhcC-CCCCCCEEEEECCeeCCCCCHHHHHHHHh-CCCCeEEEEEecCCC
Q psy4596 192 GIFISHIVPG--------GVAALSG-KLRMGDRILAVNGRDVSKVTHEEAVLALL-EPCPEILLKIQHDPH 252 (439)
Q Consensus 192 g~~V~~V~~~--------s~A~~~G-~L~~GD~Il~VNg~~v~~~~~~~~~~~l~-~~~~~v~l~v~r~~~ 252 (439)
+..|.+|.++ ||..+.| .+++||.|++|||+++. .......+|. ++++.+.|+|.+.+.
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~--~~~~~~~lL~~~agk~V~Ltv~~~~~ 81 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVT--ADANPYRLLEGKAGKQVLLTVNRKPG 81 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-B--TTB-HHHHHHTTTTSEEEEEEE-STT
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECC--CCCCHHHHhcccCCCEEEEEEecCCC
Confidence 5778888886 6767776 35699999999999998 4444444555 678999999998765
No 84
>KOG0609|consensus
Probab=97.42 E-value=0.00054 Score=68.57 Aligned_cols=82 Identities=34% Similarity=0.454 Sum_probs=70.5
Q ss_pred eeEEEEEecC-C-CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy4596 159 FLQDVVLPKS-G-PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLAL 236 (439)
Q Consensus 159 ~~~~v~l~~~-~-~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l 236 (439)
..+.|.+.|. + .+|.++.-.... .++|..|..||.+.+.|.|..||.|++|||..+.+....++..+|
T Consensus 122 ~vriv~i~k~~~eplG~Tik~~e~~----------~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l 191 (542)
T KOG0609|consen 122 AVRIVRIVKNTGEPLGATIRVEEDT----------KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELL 191 (542)
T ss_pred eeEEEEEeecCCCccceEEEeccCC----------ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHH
Confidence 4566777776 5 999999864321 489999999999999999999999999999999999999999999
Q ss_pred hCCCCeEEEEEecC
Q psy4596 237 LEPCPEILLKIQHD 250 (439)
Q Consensus 237 ~~~~~~v~l~v~r~ 250 (439)
....+.+++.+...
T Consensus 192 ~~~~G~itfkiiP~ 205 (542)
T KOG0609|consen 192 RNSRGSITFKIIPS 205 (542)
T ss_pred HhCCCcEEEEEccc
Confidence 98888899988654
No 85
>KOG3129|consensus
Probab=97.36 E-value=0.00099 Score=58.64 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=50.9
Q ss_pred cEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHh--CCCCeEEEEEecCCCCCCcceeeeeeccC
Q psy4596 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALL--EPCPEILLKIQHDPHPEGFQEITLIRQEG 266 (439)
Q Consensus 192 g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~--~~~~~v~l~v~r~~~~~~~~~v~l~~~~~ 266 (439)
=++|..|.|+|||+.+| |+.||.|+.+....-.+.....-+..+. ..++.+.++|.|.+.. ..+.+.+..+
T Consensus 140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~---v~L~ltP~~W 212 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQK---VVLSLTPKKW 212 (231)
T ss_pred eEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCE---EEEEeCcccc
Confidence 47899999999999999 9999999999876665433222222232 4577889999998765 4445554443
No 86
>KOG1320|consensus
Probab=97.29 E-value=0.0069 Score=60.90 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=89.5
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHH-------HHHHhCCCCeEEEEEecCCCCC-Cc---cee
Q psy4596 191 PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEA-------VLALLEPCPEILLKIQHDPHPE-GF---QEI 259 (439)
Q Consensus 191 ~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~-------~~~l~~~~~~v~l~v~r~~~~~-~~---~~v 259 (439)
.|+.|.++.+-+.|-.. ++.||.|+.++|..|. ...... -..++.+.+.+.+.+.|...-. .+ ...
T Consensus 287 ~g~~i~~~~qtd~ai~~--~nsg~~ll~~DG~~Ig-Vn~~~~~ri~~~~~iSf~~p~d~vl~~v~r~~e~~~~lr~~~~~ 363 (473)
T KOG1320|consen 287 TGVLISKINQTDAAINP--GNSGGPLLNLDGEVIG-VNTRKVTRIGFSHGISFKIPIDTVLVIVLRLGEFQISLRPVKPL 363 (473)
T ss_pred cceeeeeecccchhhhc--ccCCCcEEEecCcEee-eeeeeeEEeeccccceeccCchHhhhhhhhhhhhceeeccccCc
Confidence 68999999998888776 7999999999999884 111000 0012223344444444432100 00 000
Q ss_pred eeeecc--------CcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHH
Q psy4596 260 TLIRQE--------GEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEA 331 (439)
Q Consensus 260 ~l~~~~--------~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~ 331 (439)
...... ..+|-|...+...... .....+++|..|.+++++...+ +++||+|+.|||.+|.++ .++
T Consensus 364 ~p~~~~~g~~s~~i~~g~vf~~~~~~~~~~----~~~~q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~--~~l 436 (473)
T KOG1320|consen 364 VPVHQYIGLPSYYIFAGLVFVPLTKSYIFP----SGVVQLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL--KHL 436 (473)
T ss_pred ccccccCCceeEEEecceEEeecCCCcccc----ccceeEEEEEEeccCCCccccc-ccCCCEEEEECCEEeech--HHH
Confidence 000000 0112222222110000 0012368999999999999999 999999999999999777 888
Q ss_pred HHHHhcCC--CeEEEEEecCCc
Q psy4596 332 VNTLRYSG--HQISLTVCKGFE 351 (439)
Q Consensus 332 ~~~l~~~~--~~v~l~v~r~~~ 351 (439)
..+|+.+. +.|.++..|..+
T Consensus 437 ~~~i~~~~~~~~v~vl~~~~~e 458 (473)
T KOG1320|consen 437 YELIEECSTEDKVAVLDRRSAE 458 (473)
T ss_pred HHHHHhcCcCceEEEEEecCcc
Confidence 88888855 466666665543
No 87
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.26 E-value=0.00049 Score=68.40 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=40.5
Q ss_pred EEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCeEEEEEe
Q psy4596 294 ITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 347 (439)
Q Consensus 294 I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~ 347 (439)
|..|.|+|+|+.+| |++||+|++|||+.+.+ +.++...+. +..+.|+|.
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~D--w~D~~~~l~--~e~l~L~V~ 50 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRD--LIDYQFLCA--DEELELEVL 50 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHhc--CCcEEEEEE
Confidence 67889999999999 99999999999999954 477766663 456777775
No 88
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.22 E-value=0.0013 Score=55.49 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=50.4
Q ss_pred CcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCC-CCEEEEECCEEcCCCCHHHHHHHHhc-CCCeEE
Q psy4596 266 GEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKV-GMRLLEVNGMSLLGASHQEAVNTLRY-SGHQIS 343 (439)
Q Consensus 266 ~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~-GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~ 343 (439)
.+.+|++++-..... ....+.-|-+|.|+|||+.+| |++ .|.|+.+++..+.+. +++.+.+++ .+.++.
T Consensus 25 ~g~LG~sv~~~~~~~------~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~--~~l~~~v~~~~~~~l~ 95 (138)
T PF04495_consen 25 QGLLGISVRFESFEG------AEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDE--DDLFELVEANENKPLQ 95 (138)
T ss_dssp SSSS-EEEEEEE-TT------GCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--ST--CHHHHHHHHTTTS-EE
T ss_pred CCCCcEEEEEecccc------cccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCH--HHHHHHHHHcCCCcEE
Confidence 356899887543211 113367799999999999999 998 699999999998754 788888887 568899
Q ss_pred EEEec
Q psy4596 344 LTVCK 348 (439)
Q Consensus 344 l~v~r 348 (439)
|.|-.
T Consensus 96 L~Vyn 100 (138)
T PF04495_consen 96 LYVYN 100 (138)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99864
No 89
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.002 Score=63.68 Aligned_cols=79 Identities=30% Similarity=0.412 Sum_probs=59.2
Q ss_pred CccEEEeeCCCCCCCCCCCC-CCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHh--CCCCeEEEE
Q psy4596 170 PLGFSIIGGTDHSCIPFGQH-KPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALL--EPCPEILLK 246 (439)
Q Consensus 170 ~lG~~i~~~~~~~~~~~g~~-~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~--~~~~~v~l~ 246 (439)
.+|+.+.......+ +|.. ..|++|..|.+++||+++| ++.||.|+++||.++. +..+....+. ..+..+.+.
T Consensus 250 ~lgv~~~~~~~~~~--~g~~~~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~--~~~~l~~~v~~~~~g~~v~~~ 324 (347)
T COG0265 250 YLGVIGEPLTADIA--LGLPVAAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVA--SLSDLVAAVASNRPGDEVALK 324 (347)
T ss_pred ccceEEEEcccccc--cCCCCCCceEEEecCCCChHHHcC-CCCCCEEEEECCEEcc--CHHHHHHHHhccCCCCEEEEE
Confidence 55666554443332 2322 3489999999999999999 9999999999999999 6666665554 357889999
Q ss_pred EecCCCC
Q psy4596 247 IQHDPHP 253 (439)
Q Consensus 247 v~r~~~~ 253 (439)
+.|++..
T Consensus 325 ~~r~g~~ 331 (347)
T COG0265 325 LLRGGKE 331 (347)
T ss_pred EEECCEE
Confidence 9998544
No 90
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.19 E-value=0.0014 Score=64.75 Aligned_cols=48 Identities=23% Similarity=0.509 Sum_probs=41.7
Q ss_pred CCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc-CCCeEEEEEecCC
Q psy4596 300 GGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY-SGHQISLTVCKGF 350 (439)
Q Consensus 300 ~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~ 350 (439)
++||+.+| |++||.|++|||.++. +++++.+.+++ .+..+.|++.|..
T Consensus 123 ~SPAa~AG-Lq~GDiIvsING~~V~--s~~DL~~iL~~~~g~~V~LtV~R~G 171 (402)
T TIGR02860 123 HSPGEEAG-IQIGDRILKINGEKIK--NMDDLANLINKAGGEKLTLTIERGG 171 (402)
T ss_pred CCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCeEEEEEEECC
Confidence 68999999 9999999999999995 55889888887 4578999998864
No 91
>KOG1421|consensus
Probab=97.17 E-value=0.009 Score=61.43 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=49.3
Q ss_pred cEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCC--CCeEEEEEec
Q psy4596 172 GFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEP--CPEILLKIQH 249 (439)
Q Consensus 172 G~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~--~~~v~l~v~r 249 (439)
|..+.......+..+-.+..|+||.+-- ++++...+ +. |-.|.+||++++. +....+..++.- +..+.+...+
T Consensus 385 Gav~hdlsyq~ar~y~lP~~GvyVa~~~-gsf~~~~~-~y-~~ii~~vanK~tP--dLdaFidvlk~L~dg~rV~vry~h 459 (955)
T KOG1421|consen 385 GAVFHDLSYQLARLYALPVEGVYVASPG-GSFRHRGP-RY-GQIIDSVANKPTP--DLDAFIDVLKELPDGARVPVRYHH 459 (955)
T ss_pred ceEecCCCHHHHhhcccccCcEEEccCC-CCccccCC-cc-eEEEEeecCCcCC--CHHHHHHHHHhccCCCeeeEEEEE
Confidence 5555555544444444556699999866 78887776 66 9999999999999 555666667653 4555555443
No 92
>KOG0606|consensus
Probab=97.08 E-value=0.0012 Score=71.34 Aligned_cols=85 Identities=24% Similarity=0.236 Sum_probs=66.7
Q ss_pred EEEEecCC-CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCCC
Q psy4596 162 DVVLPKSG-PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPC 240 (439)
Q Consensus 162 ~v~l~~~~-~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~ 240 (439)
.|.+.+.+ .|||++....-+.-... ....-..|..|.++|||..+| |+.||.|+.|||.++.++.|.+++.++.+.+
T Consensus 629 pI~i~~~~~~yGft~~airVy~Gd~d-~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~g 706 (1205)
T KOG0606|consen 629 PITIHFSGKKYGFTLRAIRVYMGDKD-VYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSG 706 (1205)
T ss_pred ceeeeccccccCceeeeEEEecCCcc-cceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcC
Confidence 47788877 99988776442210000 011246899999999999999 9999999999999999999999999999888
Q ss_pred CeEEEEEe
Q psy4596 241 PEILLKIQ 248 (439)
Q Consensus 241 ~~v~l~v~ 248 (439)
..+.+.+.
T Consensus 707 n~v~~~tt 714 (1205)
T KOG0606|consen 707 NKVTLRTT 714 (1205)
T ss_pred CeeEEEee
Confidence 88777664
No 93
>KOG3938|consensus
Probab=96.99 E-value=0.001 Score=60.56 Aligned_cols=80 Identities=25% Similarity=0.457 Sum_probs=64.5
Q ss_pred ceeeeeeccCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHh
Q psy4596 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLR 336 (439)
Q Consensus 257 ~~v~l~~~~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~ 336 (439)
.++.+.+. ...||++|...- ..-.||+.|.+||.-++--.+.+||.|-+|||+++.++.|-++..+||
T Consensus 128 kEv~v~Ks-edalGlTITDNG-----------~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLK 195 (334)
T KOG3938|consen 128 KEVEVVKS-EDALGLTITDNG-----------AGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLK 195 (334)
T ss_pred eeEEEEec-ccccceEEeeCC-----------cceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHH
Confidence 45555544 456899987531 123699999999999888789999999999999999999999999999
Q ss_pred c--CCCeEEEEEec
Q psy4596 337 Y--SGHQISLTVCK 348 (439)
Q Consensus 337 ~--~~~~v~l~v~r 348 (439)
. .++..+|.+..
T Consensus 196 el~rge~ftlrLie 209 (334)
T KOG3938|consen 196 ELPRGETFTLRLIE 209 (334)
T ss_pred hcccCCeeEEEeec
Confidence 8 56777777654
No 94
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=96.93 E-value=0.0055 Score=57.66 Aligned_cols=81 Identities=22% Similarity=0.458 Sum_probs=61.2
Q ss_pred cEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHh--CCCCeEEEEEecCCCCCCcceeeeeec---cC
Q psy4596 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALL--EPCPEILLKIQHDPHPEGFQEITLIRQ---EG 266 (439)
Q Consensus 192 g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~--~~~~~v~l~v~r~~~~~~~~~v~l~~~---~~ 266 (439)
|+|+..|..++++ .|.|..||.|++|||+++. +..+....+. +.++.+++.+.|........++++... ..
T Consensus 131 gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~~~~~~~~~~tl~~~~~~g~ 206 (342)
T COG3480 131 GVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERHNETPEIVTITLIKNDDNGK 206 (342)
T ss_pred eEEEEEccCCcch--hceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEeccCCCceEEEEEEeeccCCc
Confidence 7999999999998 4669999999999999999 7788887776 468999999997444433334444333 34
Q ss_pred cccceeecCC
Q psy4596 267 EKLGMHIKGG 276 (439)
Q Consensus 267 ~~lG~~i~~~ 276 (439)
.++|+++...
T Consensus 207 ~giGIsl~d~ 216 (342)
T COG3480 207 AGIGISLVDA 216 (342)
T ss_pred ceeeeEeecC
Confidence 4577777554
No 95
>KOG3129|consensus
Probab=96.81 E-value=0.0034 Score=55.37 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=45.9
Q ss_pred eEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCC-HHHHHHHHhc-CCCeEEEEEecCCccCc
Q psy4596 292 VFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGAS-HQEAVNTLRY-SGHQISLTVCKGFERGD 354 (439)
Q Consensus 292 i~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~-~~~~~~~l~~-~~~~v~l~v~r~~~~~~ 354 (439)
.+|.+|.|+|||+.+| |+.||.|+++....-.+.. ...+....+. .+..+.++|.|....-.
T Consensus 141 a~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~ 204 (231)
T KOG3129|consen 141 AVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVV 204 (231)
T ss_pred EEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEE
Confidence 5899999999999999 9999999998776554443 3333333333 55788899988765443
No 96
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.72 E-value=0.0035 Score=48.36 Aligned_cols=58 Identities=26% Similarity=0.389 Sum_probs=36.3
Q ss_pred CeEEEEeCCC--------CchhhcC-CCCCCCEEEEECCEEcCCCCHHHHHHHHhc-CCCeEEEEEecCC
Q psy4596 291 GVFITKINSG--------GAAKRDG-RLKVGMRLLEVNGMSLLGASHQEAVNTLRY-SGHQISLTVCKGF 350 (439)
Q Consensus 291 gi~I~~v~~~--------s~A~~~G-~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~ 350 (439)
+..|..|.+| ||-...| .+++||.|++|||++|... .....+|.. ++..|.|+|.+..
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk~V~Ltv~~~~ 80 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAGKQVLLTVNRKP 80 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTTSEEEEEEE-ST
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCCCEEEEEEecCC
Confidence 4557777665 5555555 2559999999999999654 455566665 7789999998753
No 97
>KOG1738|consensus
Probab=96.72 E-value=0.0038 Score=63.70 Aligned_cols=77 Identities=25% Similarity=0.276 Sum_probs=66.4
Q ss_pred ccCcccceeecCCccCCCCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCeEE
Q psy4596 264 QEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQIS 343 (439)
Q Consensus 264 ~~~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~ 343 (439)
....++|+.|..-. +..++|+.+.+++||+....+..||.+++||++-+.++.+.-+|+.|+....-|.
T Consensus 210 kp~eglg~~I~Ssy-----------dg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~ 278 (638)
T KOG1738|consen 210 SPSEGLGLYIDSSY-----------DGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIE 278 (638)
T ss_pred CcccCCceEEeeec-----------CCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccce
Confidence 45677888886532 5578999999999999999999999999999999999999999999999888888
Q ss_pred EEEecCCc
Q psy4596 344 LTVCKGFE 351 (439)
Q Consensus 344 l~v~r~~~ 351 (439)
+++.+++.
T Consensus 279 l~lkKrp~ 286 (638)
T KOG1738|consen 279 LTLKKRPV 286 (638)
T ss_pred eeeeccCC
Confidence 88876643
No 98
>KOG3834|consensus
Probab=96.60 E-value=0.029 Score=54.88 Aligned_cols=148 Identities=17% Similarity=0.149 Sum_probs=93.3
Q ss_pred cCcccccCC-CCEEEEECCeecCCCCHHHHHHHHhhcCCeEEEEEEeccccCccccccCCCCCCCCccccCCCCCcCCCc
Q psy4596 21 AGEVVIHPV-GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQSMSSLDREDLD 99 (439)
Q Consensus 21 a~~~~gL~~-GD~Il~VNG~~v~~~~~~~~v~~l~~~~~~v~L~V~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (439)
.+..+||.+ =|.|++|||+-+..- .+....+|+..-+.|+|+|....
T Consensus 27 pa~~aglepffdFIvSI~g~rL~~d-nd~Lk~llk~~sekVkltv~n~k------------------------------- 74 (462)
T KOG3834|consen 27 PAHKAGLEPFFDFIVSINGIRLNKD-NDTLKALLKANSEKVKLTVYNSK------------------------------- 74 (462)
T ss_pred hHHhcCcchhhhhhheeCcccccCc-hHHHHHHHHhcccceEEEEEecc-------------------------------
Confidence 455555665 689999999988864 56677778876566999997510
Q ss_pred ccccccCccceeeeccccCCCCCCCCCCCCcccccCCCCCcccccccCcCCCCCCCCCceeEEEEEecCC-----CccEE
Q psy4596 100 TDVFKQGQWSTVVTAHQRLDTGYGLPSNSTVAAHISSSLKPSILVTYNFFSPSVRSSSLFLQDVVLPKSG-----PLGFS 174 (439)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~-----~lG~~ 174 (439)
..+.+.+.+.... -||++
T Consensus 75 ---------------------------------------------------------t~~~R~v~I~ps~~wggqllGvs 97 (462)
T KOG3834|consen 75 ---------------------------------------------------------TQEVRIVEIVPSNNWGGQLLGVS 97 (462)
T ss_pred ---------------------------------------------------------cceeEEEEecccccccccccceE
Confidence 0033445554433 36777
Q ss_pred EeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCC-CCCEEEEE-CCeeCCCCCHHHHHHHHh-CCCCeEEEEEecCC
Q psy4596 175 IIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLR-MGDRILAV-NGRDVSKVTHEEAVLALL-EPCPEILLKIQHDP 251 (439)
Q Consensus 175 i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~-~GD~Il~V-Ng~~v~~~~~~~~~~~l~-~~~~~v~l~v~r~~ 251 (439)
|+-.....+ ...-.-|-+|.++|||+.+| |+ -+|.|+-+ |.+.- ...+...++. ..++.+.|.|..-.
T Consensus 98 vrFcsf~~A-----~~~vwHvl~V~p~SPaalAg-l~~~~DYivG~~~~~~~---~~eDl~~lIeshe~kpLklyVYN~D 168 (462)
T KOG3834|consen 98 VRFCSFDGA-----VESVWHVLSVEPNSPAALAG-LRPYTDYIVGIWDAVMH---EEEDLFTLIESHEGKPLKLYVYNHD 168 (462)
T ss_pred EEeccCccc-----hhheeeeeecCCCCHHHhcc-cccccceEecchhhhcc---chHHHHHHHHhccCCCcceeEeecC
Confidence 764332111 11123477899999999999 88 67999988 55433 3444444444 45778888876543
Q ss_pred CCCCcceeeeeeccCc
Q psy4596 252 HPEGFQEITLIRQEGE 267 (439)
Q Consensus 252 ~~~~~~~v~l~~~~~~ 267 (439)
.. ..+++.+.....|
T Consensus 169 ~d-~~ReVti~pn~aw 183 (462)
T KOG3834|consen 169 TD-SCREVTITPNSAW 183 (462)
T ss_pred CC-ccceEEeeccccc
Confidence 22 2356666655443
No 99
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.52 E-value=0.005 Score=61.81 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=43.2
Q ss_pred CCCCCCCCCCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCeEEEEEecCC
Q psy4596 281 RGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGF 350 (439)
Q Consensus 281 ~g~~~~~~~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~ 350 (439)
.|........+..|..|.++|||+++| |.+||.|+.|||.+-.... -+++..|.+.+-+..
T Consensus 453 LGl~v~~~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~l~~--------~~~~d~i~v~~~~~~ 513 (558)
T COG3975 453 LGLKVKSEGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQLDR--------YKVNDKIQVHVFREG 513 (558)
T ss_pred cceEecccCCeeEEEecCCCChhHhcc-CCCccEEEEEcCccccccc--------cccccceEEEEccCC
Confidence 333333445578999999999999999 9999999999998221111 025677777776543
No 100
>KOG3938|consensus
Probab=96.44 E-value=0.0044 Score=56.48 Aligned_cols=79 Identities=28% Similarity=0.341 Sum_probs=62.6
Q ss_pred eEEEEEecCC-CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhC
Q psy4596 160 LQDVVLPKSG-PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE 238 (439)
Q Consensus 160 ~~~v~l~~~~-~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~ 238 (439)
..+|.+.|.. .||++|...-- .-.||..|.++|.-.+--.+++||.|-+|||..+-++.|.++...|+.
T Consensus 127 ~kEv~v~KsedalGlTITDNG~----------GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKe 196 (334)
T KOG3938|consen 127 AKEVEVVKSEDALGLTITDNGA----------GYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKE 196 (334)
T ss_pred ceeEEEEecccccceEEeeCCc----------ceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHh
Confidence 5677788876 99999986321 137999999999988866699999999999999999999999999986
Q ss_pred C--CCeEEEEEe
Q psy4596 239 P--CPEILLKIQ 248 (439)
Q Consensus 239 ~--~~~v~l~v~ 248 (439)
. +...+|.+.
T Consensus 197 l~rge~ftlrLi 208 (334)
T KOG3938|consen 197 LPRGETFTLRLI 208 (334)
T ss_pred cccCCeeEEEee
Confidence 4 444444443
No 101
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=96.36 E-value=0.0041 Score=58.36 Aligned_cols=53 Identities=17% Similarity=0.146 Sum_probs=39.9
Q ss_pred eeEEecC------cccccCCCCEEEEECCeecCCCCH-HHHHHHHhhcCCeEEEEEEeccc
Q psy4596 16 GVILAAG------EVVIHPVGMRLLEVNGMSLLGASH-QEAVNTLRYSGHQISLTVCKGFE 69 (439)
Q Consensus 16 Gi~vsa~------~~~gL~~GD~Il~VNG~~v~~~~~-~~~v~~l~~~~~~v~L~V~R~~~ 69 (439)
|.-++++ +..|||+||++++|||.++.+..+ .++++.|++. ..++|+|.|++.
T Consensus 208 GYrl~Pgkd~~lF~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~~-tei~ltVeRdGq 267 (276)
T PRK09681 208 GYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSM-DSIQLTVLRKGA 267 (276)
T ss_pred EEEECCCCcHHHHHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhccC-CeEEEEEEECCE
Confidence 6666543 455899999999999999997654 3455555554 789999999764
No 102
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=96.35 E-value=0.006 Score=57.28 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=37.9
Q ss_pred hhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHh--CCCCeEEEEEecCCCC
Q psy4596 203 VAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALL--EPCPEILLKIQHDPHP 253 (439)
Q Consensus 203 ~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~--~~~~~v~l~v~r~~~~ 253 (439)
.-.++| |++||.+++|||.++.+ ..++..++. +....+.|+|.|++..
T Consensus 219 lF~~~G-Lq~GDva~sING~dL~D--~~qa~~l~~~L~~~tei~ltVeRdGq~ 268 (276)
T PRK09681 219 LFDASG-FKEGDIAIALNQQDFTD--PRAMIALMRQLPSMDSIQLTVLRKGAR 268 (276)
T ss_pred HHHHcC-CCCCCEEEEeCCeeCCC--HHHHHHHHHHhccCCeEEEEEEECCEE
Confidence 456789 99999999999999994 444444443 4568899999999866
No 103
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.015 Score=57.51 Aligned_cols=59 Identities=22% Similarity=0.415 Sum_probs=50.7
Q ss_pred CCCeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc--CCCeEEEEEecCC
Q psy4596 289 DEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY--SGHQISLTVCKGF 350 (439)
Q Consensus 289 ~~gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~ 350 (439)
..|++|..|.+++||+++| ++.||.|+++||..+.+ ..+....+.. .+..+.+.+.|+.
T Consensus 269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~--~~~l~~~v~~~~~g~~v~~~~~r~g 329 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVAS--LSDLVAAVASNRPGDEVALKLLRGG 329 (347)
T ss_pred CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccC--HHHHHHHHhccCCCCEEEEEEEECC
Confidence 4579999999999999999 99999999999999954 4777766665 5689999999883
No 104
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.23 E-value=0.012 Score=59.16 Aligned_cols=53 Identities=26% Similarity=0.363 Sum_probs=40.1
Q ss_pred cEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCCCCeEEEEEecCCCC
Q psy4596 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253 (439)
Q Consensus 192 g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 253 (439)
+..|..|.++|||.+|| |.+||.|++|||..-+ . .-.+.+..+.+.+.|.+.-
T Consensus 463 ~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~---l-----~~~~~~d~i~v~~~~~~~L 515 (558)
T COG3975 463 HEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQ---L-----DRYKVNDKIQVHVFREGRL 515 (558)
T ss_pred eeEEEecCCCChhHhcc-CCCccEEEEEcCcccc---c-----cccccccceEEEEccCCce
Confidence 57899999999999999 9999999999999111 0 0014566777777776543
No 105
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=95.91 E-value=0.029 Score=52.99 Aligned_cols=58 Identities=21% Similarity=0.444 Sum_probs=50.4
Q ss_pred CeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc--CCCeEEEEEecCCcc
Q psy4596 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY--SGHQISLTVCKGFER 352 (439)
Q Consensus 291 gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 352 (439)
|+|+..|..+++|. |.|+.||.|++|||+++. +.+++...+++ .|+.|++.+.|....
T Consensus 131 gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~~~~ 190 (342)
T COG3480 131 GVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERHNET 190 (342)
T ss_pred eEEEEEccCCcchh--ceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEeccCC
Confidence 89999999999885 669999999999999995 55999999986 789999999975443
No 106
>KOG3532|consensus
Probab=95.87 E-value=0.025 Score=58.17 Aligned_cols=57 Identities=18% Similarity=0.317 Sum_probs=49.9
Q ss_pred CeEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCeEEEEEecCC
Q psy4596 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGF 350 (439)
Q Consensus 291 gi~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~ 350 (439)
.+-|..|.++++|.++. |++||++++|||.+|. +-.++...++.....+...+.|+.
T Consensus 399 ~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~~~ 455 (1051)
T KOG3532|consen 399 AVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVERSL 455 (1051)
T ss_pred EEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEeecc
Confidence 56799999999999999 9999999999999995 559999999997777777776653
No 107
>KOG3532|consensus
Probab=95.66 E-value=0.035 Score=57.14 Aligned_cols=55 Identities=13% Similarity=0.279 Sum_probs=47.8
Q ss_pred cEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCCCCeEEEEEec
Q psy4596 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQH 249 (439)
Q Consensus 192 g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r 249 (439)
.+-|..|.++++|.++. |.+||++++|||.+|. +..++...++.....+..++.|
T Consensus 399 ~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 399 AVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred EEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEee
Confidence 47899999999999999 9999999999999999 8888888888776666665554
No 108
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=95.07 E-value=0.042 Score=49.69 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=40.9
Q ss_pred CCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHh--CCCCeEEEEEecCCCCC
Q psy4596 200 PGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALL--EPCPEILLKIQHDPHPE 254 (439)
Q Consensus 200 ~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~--~~~~~v~l~v~r~~~~~ 254 (439)
+++.-...| |+.||..++||+.++. +..++..++. ..-..+.|+|.|++.++
T Consensus 216 d~slF~~sg-lq~GDIavaiNnldlt--dp~~m~~llq~l~~m~s~qlTv~R~G~rh 269 (275)
T COG3031 216 DGSLFYKSG-LQRGDIAVAINNLDLT--DPEDMFRLLQMLRNMPSLQLTVIRRGKRH 269 (275)
T ss_pred Ccchhhhhc-CCCcceEEEecCcccC--CHHHHHHHHHhhhcCcceEEEEEecCccc
Confidence 456777889 9999999999999998 5555554444 45677999999998773
No 109
>PF12812 PDZ_1: PDZ-like domain
Probab=94.74 E-value=0.25 Score=37.26 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=36.4
Q ss_pred eEEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCC
Q psy4596 292 VFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSG 339 (439)
Q Consensus 292 i~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~ 339 (439)
.++.+...|+++...| +..|-.|.+|||+++.++ +++++.+++..
T Consensus 32 gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~L--d~f~~vvk~ip 76 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPDL--DDFIKVVKKIP 76 (78)
T ss_pred EEEEEecCCChhhhCC-CCCCeEEEeECCcCCcCH--HHHHHHHHhCC
Confidence 4444557788888777 999999999999999655 99999988754
No 110
>KOG1320|consensus
Probab=94.73 E-value=0.1 Score=52.73 Aligned_cols=59 Identities=20% Similarity=0.383 Sum_probs=46.4
Q ss_pred cEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCC--CCeEEEEEecCCCC
Q psy4596 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEP--CPEILLKIQHDPHP 253 (439)
Q Consensus 192 g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~~ 253 (439)
+++|..|.+++++...+ +.+||+|++|||++|.++ .++...+..+ ++.+.++.+|....
T Consensus 399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~~~~v~vl~~~~~e~ 459 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL--KHLYELIEECSTEDKVAVLDRRSAED 459 (473)
T ss_pred EEEEEEeccCCCccccc-ccCCCEEEEECCEEeech--HHHHHHHHhcCcCceEEEEEecCccc
Confidence 68999999999999999 999999999999999954 5555556543 34666666665443
No 111
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=94.30 E-value=0.19 Score=45.56 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=40.5
Q ss_pred CCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc--CCCeEEEEEecCCccCc
Q psy4596 300 GGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY--SGHQISLTVCKGFERGD 354 (439)
Q Consensus 300 ~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~~~ 354 (439)
++.-+..| ||.||..++||+.+++ +.+++..+|+. .-..+.|+|.|+..+.+
T Consensus 217 ~slF~~sg-lq~GDIavaiNnldlt--dp~~m~~llq~l~~m~s~qlTv~R~G~rhd 270 (275)
T COG3031 217 GSLFYKSG-LQRGDIAVAINNLDLT--DPEDMFRLLQMLRNMPSLQLTVIRRGKRHD 270 (275)
T ss_pred cchhhhhc-CCCcceEEEecCcccC--CHHHHHHHHHhhhcCcceEEEEEecCccce
Confidence 45557778 9999999999999994 45777777776 44788999998765444
No 112
>KOG1738|consensus
Probab=94.23 E-value=0.092 Score=53.98 Aligned_cols=71 Identities=25% Similarity=0.233 Sum_probs=59.6
Q ss_pred CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCCCCeEEEEEec
Q psy4596 170 PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQH 249 (439)
Q Consensus 170 ~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~r 249 (439)
++|+.|...-+ ..++|..+.+++||...++|..||.|++||+..+.++.+.-++..+.....-+.++|..
T Consensus 214 glg~~I~Ssyd----------g~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkK 283 (638)
T KOG1738|consen 214 GLGLYIDSSYD----------GPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKK 283 (638)
T ss_pred CCceEEeeecC----------CceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeec
Confidence 78888876433 34899999999999999999999999999999999998888888888776667666654
Q ss_pred C
Q psy4596 250 D 250 (439)
Q Consensus 250 ~ 250 (439)
.
T Consensus 284 r 284 (638)
T KOG1738|consen 284 R 284 (638)
T ss_pred c
Confidence 3
No 113
>PF12812 PDZ_1: PDZ-like domain
Probab=93.88 E-value=0.15 Score=38.49 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=47.7
Q ss_pred CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCC
Q psy4596 170 PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEP 239 (439)
Q Consensus 170 ~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~ 239 (439)
..|-.+...+...+..++.+-. .++.....++++...| +..|-.|.+||++++. +..+++..+++.
T Consensus 10 ~~Ga~f~~Ls~q~aR~~~~~~~-gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~i 75 (78)
T PF12812_consen 10 VCGAVFHDLSYQQARQYGIPVG-GVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTP--DLDDFIKVVKKI 75 (78)
T ss_pred EcCeecccCCHHHHHHhCCCCC-EEEEEecCCChhhhCC-CCCCeEEEeECCcCCc--CHHHHHHHHHhC
Confidence 3466666655555555555444 4555667888888877 9999999999999999 667777777654
No 114
>KOG4407|consensus
Probab=91.28 E-value=0.19 Score=55.63 Aligned_cols=55 Identities=25% Similarity=0.434 Sum_probs=48.6
Q ss_pred EEEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhCCCCeEEEEEe
Q psy4596 193 IFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQ 248 (439)
Q Consensus 193 ~~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~ 248 (439)
+||.+|.++++|..+- |+.||+++.||..++.++...+++..+++....+.+.+.
T Consensus 145 ~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~ 199 (1973)
T KOG4407|consen 145 IFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVV 199 (1973)
T ss_pred hhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCCCCCCceec
Confidence 7888999999999998 999999999999999999999999888876666666554
No 115
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=83.80 E-value=3.3 Score=41.12 Aligned_cols=53 Identities=30% Similarity=0.536 Sum_probs=41.3
Q ss_pred EEEEECCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHhC-CCCe---EEEEEec
Q psy4596 194 FISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLE-PCPE---ILLKIQH 249 (439)
Q Consensus 194 ~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~---v~l~v~r 249 (439)
++..+..+++|+.+| +++||+|+++|+.++. ++.+....+.. .+.. +.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVA--SWDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEcc--CHHHHHHHHHhccCCcccceEEEEEe
Confidence 455789999999999 9999999999999999 66666554442 3333 6777777
No 116
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=83.15 E-value=3.4 Score=41.07 Aligned_cols=53 Identities=21% Similarity=0.364 Sum_probs=42.1
Q ss_pred EEEEeCCCCchhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc-CCCe---EEEEEec
Q psy4596 293 FITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY-SGHQ---ISLTVCK 348 (439)
Q Consensus 293 ~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~---v~l~v~r 348 (439)
++..+..+++|..+| |++||+|+++|+..+..+ .++...+.. .+.. +.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVASW--DDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEccCH--HHHHHHHHhccCCcccceEEEEEe
Confidence 444799999999999 999999999999999544 776665554 3344 6788887
No 117
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=80.96 E-value=18 Score=31.92 Aligned_cols=78 Identities=18% Similarity=0.297 Sum_probs=49.2
Q ss_pred CHHHHHHHHh--CCCCeEEEEEecCCCCCCcc--eeeeeeccC-------cccceeecCCccCCCCCCCCCCCCCeEEEE
Q psy4596 228 THEEAVLALL--EPCPEILLKIQHDPHPEGFQ--EITLIRQEG-------EKLGMHIKGGLRGQRGNPLDKNDEGVFITK 296 (439)
Q Consensus 228 ~~~~~~~~l~--~~~~~v~l~v~r~~~~~~~~--~v~l~~~~~-------~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~ 296 (439)
...+....+. ..++.+++.|.+........ ++.+.-.+. ...|+.+.. .+..+.|..
T Consensus 61 p~~~~~~~~~~~~~g~~lrl~V~G~~~~G~~~~k~v~lpl~~~~~g~eRL~~~GL~l~~------------e~~~~~Vd~ 128 (183)
T PF11874_consen 61 PPSELVQVAEQLPPGSSLRLRVEGPDFEGDPVTKTVLLPLGDGADGEERLEAAGLTLME------------EGGKVIVDE 128 (183)
T ss_pred CHHHHHHHHhcCCCCCEEEEEEEccCCCCCceEEEEEEEcCCCCCHHHHHHhCCCEEEe------------eCCEEEEEe
Confidence 4445554444 35788888888754432221 222211111 124666543 244689999
Q ss_pred eCCCCchhhcCCCCCCCEEEEE
Q psy4596 297 INSGGAAKRDGRLKVGMRLLEV 318 (439)
Q Consensus 297 v~~~s~A~~~G~L~~GD~Il~V 318 (439)
|..||+|+++| +..++.|.+|
T Consensus 129 v~fgS~A~~~g-~d~d~~I~~v 149 (183)
T PF11874_consen 129 VEFGSPAEKAG-IDFDWEITEV 149 (183)
T ss_pred cCCCCHHHHcC-CCCCcEEEEE
Confidence 99999999999 9999999877
No 118
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=80.13 E-value=28 Score=30.75 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=32.3
Q ss_pred CccEEEeeCCCCCCCCCCCCCCcEEEEEECCCChhhhcCCCCCCCEEEEEC
Q psy4596 170 PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220 (439)
Q Consensus 170 ~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~~~s~A~~~G~L~~GD~Il~VN 220 (439)
..|+.+....+ .+.|..|..||+|+++| +.-|+.|++|-
T Consensus 112 ~~GL~l~~e~~-----------~~~Vd~v~fgS~A~~~g-~d~d~~I~~v~ 150 (183)
T PF11874_consen 112 AAGLTLMEEGG-----------KVIVDEVEFGSPAEKAG-IDFDWEITEVE 150 (183)
T ss_pred hCCCEEEeeCC-----------EEEEEecCCCCHHHHcC-CCCCcEEEEEE
Confidence 46888776332 48999999999999999 99999998873
No 119
>KOG2921|consensus
Probab=74.75 E-value=4.1 Score=39.92 Aligned_cols=46 Identities=24% Similarity=0.318 Sum_probs=37.8
Q ss_pred CCCeEEEEeCCCCchhh-cCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc
Q psy4596 289 DEGVFITKINSGGAAKR-DGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY 337 (439)
Q Consensus 289 ~~gi~I~~v~~~s~A~~-~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~ 337 (439)
..|+.|.+|...||+.- -| |.+||+|.++||.+|... +++.+.|+.
T Consensus 219 g~gV~Vtev~~~Spl~gprG-L~vgdvitsldgcpV~~v--~dW~ecl~t 265 (484)
T KOG2921|consen 219 GEGVTVTEVPSVSPLFGPRG-LSVGDVITSLDGCPVHKV--SDWLECLAT 265 (484)
T ss_pred CceEEEEeccccCCCcCccc-CCccceEEecCCcccCCH--HHHHHHHHh
Confidence 45889999999998743 26 999999999999999654 788777776
No 120
>KOG2921|consensus
Probab=71.62 E-value=6.1 Score=38.79 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=35.8
Q ss_pred CcEEEEEECCCChhhh-cCCCCCCCEEEEECCeeCCCCCHHHHHHHHh
Q psy4596 191 PGIFISHIVPGGVAAL-SGKLRMGDRILAVNGRDVSKVTHEEAVLALL 237 (439)
Q Consensus 191 ~g~~V~~V~~~s~A~~-~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~ 237 (439)
.|+.|.+|...||+-- .| |.+||+|.++||.+|. +.+++...+.
T Consensus 220 ~gV~Vtev~~~Spl~gprG-L~vgdvitsldgcpV~--~v~dW~ecl~ 264 (484)
T KOG2921|consen 220 EGVTVTEVPSVSPLFGPRG-LSVGDVITSLDGCPVH--KVSDWLECLA 264 (484)
T ss_pred ceEEEEeccccCCCcCccc-CCccceEEecCCcccC--CHHHHHHHHH
Confidence 3789999999888743 37 9999999999999999 6666665554
No 121
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=54.07 E-value=17 Score=33.22 Aligned_cols=88 Identities=24% Similarity=0.482 Sum_probs=38.6
Q ss_pred ECCCChhhhcCCCCCCCEEEEEC--CeeCCCCCHHHHHHHHhCCCCeEEEEEecCCCCCCcceeeeeeccCcccceeecC
Q psy4596 198 IVPGGVAALSGKLRMGDRILAVN--GRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQEITLIRQEGEKLGMHIKG 275 (439)
Q Consensus 198 V~~~s~A~~~G~L~~GD~Il~VN--g~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~~~~v~l~~~~~~~lG~~i~~ 275 (439)
...|+.-...- |++||+|++++ |..+ -.+|.+.+.|++.... .-+.+....+. -+.+..
T Consensus 21 ~~~G~~k~m~~-L~iGD~Vla~d~~G~~~---------------yS~V~~flhr~~~~~~-~F~~i~te~g~--~l~LTp 81 (217)
T PF01079_consen 21 LEDGGRKRMSD-LKIGDRVLAVDSDGKLV---------------YSPVIMFLHRDPEQRA-EFVVIETEDGR--SLTLTP 81 (217)
T ss_dssp BTTS-EEEGGG---TT-EEEEE-TTS-EE---------------EEEEEEEEEEEEEEEE-EEEEEEETTS---EEEE-T
T ss_pred eCCCCEeEHHH-CCCCCEEEEecCCCcEE---------------EEeEEEEeccCccccE-EEEEEEcCCCC--eEEecC
Confidence 34444555666 99999999987 2222 1345555666543211 11222222222 233433
Q ss_pred CccCCCCCCCCCCCCCeEEEEeCCCC----chhhcCCCCCCCEEEE
Q psy4596 276 GLRGQRGNPLDKNDEGVFITKINSGG----AAKRDGRLKVGMRLLE 317 (439)
Q Consensus 276 ~~~~~~g~~~~~~~~gi~I~~v~~~s----~A~~~G~L~~GD~Il~ 317 (439)
. .-||+..-.... .+-.+.++++||.|+-
T Consensus 82 ~-------------HLI~v~~~~~~~~~~~~~vfA~~V~~Gd~v~~ 114 (217)
T PF01079_consen 82 N-------------HLIFVADCNGSESSNFRAVFASDVRVGDCVLV 114 (217)
T ss_dssp T--------------EEEEEETTTTEE---EEEEGGG--TT-EEEE
T ss_pred C-------------cEEEEecCCCCcccccceeehhhCCCCCEEEE
Confidence 1 135555544332 2344566999999998
No 122
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=37.06 E-value=49 Score=29.81 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=33.3
Q ss_pred ccccCCCCEEEEECCeecCCCCHHHHHHHHhhcCCeEE
Q psy4596 24 VVIHPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQIS 61 (439)
Q Consensus 24 ~~gL~~GD~Il~VNG~~v~~~~~~~~v~~l~~~~~~v~ 61 (439)
.+++..|++++-|+++-..+.+-.+++.+|+..|-.|.
T Consensus 106 eG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~ 143 (201)
T COG0461 106 EGGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVV 143 (201)
T ss_pred EecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEE
Confidence 45566899999999999999999999999999876643
No 123
>KOG0792|consensus
Probab=33.94 E-value=20 Score=39.82 Aligned_cols=69 Identities=30% Similarity=0.539 Sum_probs=52.2
Q ss_pred CCCccEEEeeCCCCCCCCCCCCCCcEEEEEEC-------------CCChhhhcC-CCCCCCEEEEECCeeCCCCCHHHHH
Q psy4596 168 SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIV-------------PGGVAALSG-KLRMGDRILAVNGRDVSKVTHEEAV 233 (439)
Q Consensus 168 ~~~lG~~i~~~~~~~~~~~g~~~~g~~V~~V~-------------~~s~A~~~G-~L~~GD~Il~VNg~~v~~~~~~~~~ 233 (439)
.|.+||-+.++.+.... ....+..+..|. |+++|+... ++..||.++.|||..+....|...+
T Consensus 715 ~g~~g~~~~g~~dq~~~---~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~v 791 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQN---LLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVV 791 (1144)
T ss_pred Cccccccccchhhhhhc---cccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchH
Confidence 45889999988764311 123356777777 888886654 6788999999999999999999999
Q ss_pred HHHhCC
Q psy4596 234 LALLEP 239 (439)
Q Consensus 234 ~~l~~~ 239 (439)
..+++.
T Consensus 792 s~irs~ 797 (1144)
T KOG0792|consen 792 SLIRSP 797 (1144)
T ss_pred HHHhhh
Confidence 877654
No 124
>KOG0792|consensus
Probab=33.12 E-value=25 Score=39.16 Aligned_cols=71 Identities=23% Similarity=0.403 Sum_probs=51.5
Q ss_pred CcccceeecCCccCCCCCCCCCCCCCeEEEEeC-------------CCCchhhc-CCCCCCCEEEEECCEEcCCCCHHHH
Q psy4596 266 GEKLGMHIKGGLRGQRGNPLDKNDEGVFITKIN-------------SGGAAKRD-GRLKVGMRLLEVNGMSLLGASHQEA 331 (439)
Q Consensus 266 ~~~lG~~i~~~~~~~~g~~~~~~~~gi~I~~v~-------------~~s~A~~~-G~L~~GD~Il~VNg~~v~~~~~~~~ 331 (439)
.+.+|+.+.|+.+..-- ....+..++.|. |.++|+.. -++-.||+++.|||.++....|+.+
T Consensus 715 ~g~~g~~~~g~~dq~~~----~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~ 790 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQN----LLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQV 790 (1144)
T ss_pred Cccccccccchhhhhhc----cccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccch
Confidence 67789988886543211 012245566666 77777554 4577999999999999999999999
Q ss_pred HHHHhcCCC
Q psy4596 332 VNTLRYSGH 340 (439)
Q Consensus 332 ~~~l~~~~~ 340 (439)
+.+|++..+
T Consensus 791 vs~irs~r~ 799 (1144)
T KOG0792|consen 791 VSLIRSPRE 799 (1144)
T ss_pred HHHHhhhhh
Confidence 999998443
No 125
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=32.22 E-value=91 Score=27.73 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=32.0
Q ss_pred ccCCCCEEEEECCeecCCCCHHHHHHHHhhcCCeEE
Q psy4596 26 IHPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQIS 61 (439)
Q Consensus 26 gL~~GD~Il~VNG~~v~~~~~~~~v~~l~~~~~~v~ 61 (439)
.+..||+++-||+.-..+-|-..++++++++|-.|.
T Consensus 118 ~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~ 153 (187)
T PRK13810 118 DLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIK 153 (187)
T ss_pred cCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEE
Confidence 477999999999999999999999999999775543
No 126
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=27.50 E-value=36 Score=32.56 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=26.5
Q ss_pred EEEEeCCCCchhhcCCCCCCCEEEEECCEEc
Q psy4596 293 FITKINSGGAAKRDGRLKVGMRLLEVNGMSL 323 (439)
Q Consensus 293 ~I~~v~~~s~A~~~G~L~~GD~Il~VNg~~v 323 (439)
-+-.|.+-++|+++| .-.||.|+-+|+.++
T Consensus 66 ~~lrv~~~~~~e~~~-~~~~dyilg~n~Dp~ 95 (417)
T COG5233 66 EVLRVNPESPAEKAG-MVVGDYILGINEDPL 95 (417)
T ss_pred hheeccccChhHhhc-cccceeEEeecCCcH
Confidence 456788999999999 999999999998665
No 127
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=27.40 E-value=1.2e+02 Score=27.04 Aligned_cols=37 Identities=30% Similarity=0.448 Sum_probs=32.8
Q ss_pred CCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCeEE
Q psy4596 307 GRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQIS 343 (439)
Q Consensus 307 G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~ 343 (439)
|.+.+||+++-|++.-..+-+-.++++++++.|..|.
T Consensus 117 g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~ 153 (187)
T PRK13810 117 GDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIK 153 (187)
T ss_pred ccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEE
Confidence 4588999999999999999999999999999886543
No 128
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=26.80 E-value=41 Score=32.25 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=26.9
Q ss_pred EEEEECCCChhhhcCCCCCCCEEEEECCeeCC
Q psy4596 194 FISHIVPGGVAALSGKLRMGDRILAVNGRDVS 225 (439)
Q Consensus 194 ~V~~V~~~s~A~~~G~L~~GD~Il~VNg~~v~ 225 (439)
-+..|.+.++|+++| .-.||.|+-+|+-++.
T Consensus 66 ~~lrv~~~~~~e~~~-~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 66 EVLRVNPESPAEKAG-MVVGDYILGINEDPLR 96 (417)
T ss_pred hheeccccChhHhhc-cccceeEEeecCCcHH
Confidence 456788999999999 9999999999986664
No 129
>KOG3369|consensus
Probab=26.13 E-value=52 Score=28.63 Aligned_cols=31 Identities=29% Similarity=0.229 Sum_probs=24.2
Q ss_pred eeEEecCcccccCCCCEEEEECCeecCCCCH
Q psy4596 16 GVILAAGEVVIHPVGMRLLEVNGMSLLGASH 46 (439)
Q Consensus 16 Gi~vsa~~~~gL~~GD~Il~VNG~~v~~~~~ 46 (439)
-++|+-++.-|+++|..+.+|||.++.+...
T Consensus 41 ~~vvaf~~kdgik~~~~~~~vNg~~v~g~~~ 71 (199)
T KOG3369|consen 41 KVVVAFGSKDGIKVGHLVQAVNGENVNGYIL 71 (199)
T ss_pred ceeEEeecccccchhheeeeeccccccccee
Confidence 3445545666699999999999999998753
No 130
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=25.75 E-value=88 Score=27.92 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=31.0
Q ss_pred cCCCCEEEEECCeecCCCCHHHHHHHHhhcCCeE
Q psy4596 27 HPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQI 60 (439)
Q Consensus 27 L~~GD~Il~VNG~~v~~~~~~~~v~~l~~~~~~v 60 (439)
+..||++|-|++.-..+-|-..++++++++|..|
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~V 147 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKI 147 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEE
Confidence 6799999999999999999999999999987653
No 131
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=23.63 E-value=78 Score=23.64 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=20.4
Q ss_pred cceeEEecCcccccCCCCEEEEECCeecCC
Q psy4596 14 QAGVILAAGEVVIHPVGMRLLEVNGMSLLG 43 (439)
Q Consensus 14 ~~Gi~vsa~~~~gL~~GD~Il~VNG~~v~~ 43 (439)
++||||.......+++||+ +.|.|+--+-
T Consensus 32 s~gifV~~~~~~~~~~Gd~-V~vtG~v~ey 60 (78)
T cd04486 32 SEGIFVYTGSGADVAVGDL-VRVTGTVTEY 60 (78)
T ss_pred cceEEEecCCCCCCCCCCE-EEEEEEEEee
Confidence 6789998554666899998 5666764443
No 132
>COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.19 E-value=90 Score=33.75 Aligned_cols=25 Identities=40% Similarity=0.510 Sum_probs=20.6
Q ss_pred CCCchhhcCCCCCCCEEE-EECCEEcC
Q psy4596 299 SGGAAKRDGRLKVGMRLL-EVNGMSLL 324 (439)
Q Consensus 299 ~~s~A~~~G~L~~GD~Il-~VNg~~v~ 324 (439)
+.+.|..-| ||.||.+. .|+|+++.
T Consensus 602 e~~~A~~Lg-lKLGDtvTf~v~gq~i~ 627 (829)
T COG3127 602 EEGEAKRLG-LKLGDTVTFMVLGQNIT 627 (829)
T ss_pred hHhHHHHhC-CccCCEEEEEeccceEE
Confidence 456788889 99999986 79998874
No 133
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=22.86 E-value=1e+02 Score=27.49 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=31.1
Q ss_pred cCCCCEEEEECCeecCCCCHHHHHHHHhhcCCeE
Q psy4596 27 HPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQI 60 (439)
Q Consensus 27 L~~GD~Il~VNG~~v~~~~~~~~v~~l~~~~~~v 60 (439)
+..||+++=||+.-..+-|-..++++++++|..+
T Consensus 114 i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~v 147 (189)
T PRK09219 114 LSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKV 147 (189)
T ss_pred CCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEE
Confidence 7799999999999999999999999999987654
Done!