RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4596
(439 letters)
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 201 bits (514), Expect = 3e-63
Identities = 74/195 (37%), Positives = 104/195 (53%), Gaps = 8/195 (4%)
Query: 155 SSSLFLQDVVLPKS-GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMG 213
S S+ +++ L + LGFSI GGTD+ P P IFI+ I+PGG AA G+LR+
Sbjct: 1 SGSMEYEEITLERGNSGLGFSIAGGTDN---PHIGDDPSIFITKIIPGGAAAQDGRLRVN 57
Query: 214 DRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQEITLIRQEGEKLGMHI 273
D IL VN DV +VTH AV AL E + L + P + + + LG I
Sbjct: 58 DSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSI 117
Query: 274 KGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVN 333
GG GN D +++TKI GGAA +DGRL++G ++L VN + L H++AV
Sbjct: 118 AGG----VGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVA 173
Query: 334 TLRYSGHQISLTVCK 348
L+ + + L V K
Sbjct: 174 ALKNTYDVVYLKVAK 188
Score = 97.5 bits (243), Expect = 6e-24
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
++EITL R LG I GG NP +D +FITKI GGAA +DGRL+V +
Sbjct: 6 YEEITLER-GNSGLGFSIAGG----TDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 60
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRS 367
L VN + + +H AV L+ +G + L V + + +G +
Sbjct: 61 LFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKG 112
Score = 88.7 bits (220), Expect = 8e-21
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 166 PKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVS 225
LGFSI GG + IP I+++ I+ GG A G+L++GD+ILAVN +
Sbjct: 108 KGPKGLGFSIAGGVGNQHIP---GDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLE 164
Query: 226 KVTHEEAVLALLEPCPEILLKIQHDPHPE 254
V HE+AV AL + LK+ + E
Sbjct: 165 DVMHEDAVAALKNTYDVVYLKVAKPSNAE 193
Score = 53.6 bits (129), Expect = 1e-08
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
+G ++L VN + L H++AV L+ + + L V K
Sbjct: 151 IGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 188
Score = 50.9 bits (122), Expect = 1e-07
Identities = 12/57 (21%), Positives = 23/57 (40%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRS 85
V +L VN + + +H AV L+ +G + L V + + +G +
Sbjct: 56 VNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKG 112
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 184 bits (470), Expect = 1e-56
Identities = 63/196 (32%), Positives = 98/196 (50%), Gaps = 25/196 (12%)
Query: 163 VVLPK--SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
V L K LG ++ GG D +S++ GG+AA S +L +GD I AVN
Sbjct: 11 VELMKKEGTTLGLTVSGGIDKDG--------KPRVSNLRQGGIAARSDQLDVGDYIKAVN 62
Query: 221 GRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQ---------EITLIRQEGEKLGM 271
G +++K H+E + L ++L+++++ P Q E+TL + EG G
Sbjct: 63 GINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHK-EGNTFGF 121
Query: 272 HIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEA 331
I+GG R V IT + GG A R+G +K G RLL V+G+ LLG +H EA
Sbjct: 122 VIRGGAHDDRNK-----SRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEA 176
Query: 332 VNTLRYSGHQISLTVC 347
++ L+ G + +L +
Sbjct: 177 MSILKQCGQEATLLIE 192
Score = 95.6 bits (238), Expect = 3e-23
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 161 QDVVLPKSG-PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
+V L K G GF I GG + I+ + PGG A G ++ GDR+L+V
Sbjct: 108 VEVTLHKEGNTFGFVIRGGAHDDR----NKSRPVVITCVRPGGPADREGTIKPGDRLLSV 163
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
+G + TH EA+ L + E L I++D
Sbjct: 164 DGIRLLGTTHAEAMSILKQCGQEATLLIEYDV 195
Score = 94.0 bits (234), Expect = 1e-22
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 250 DPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRL 309
+G + L+++EG LG+ + GG+ D ++ + GG A R +L
Sbjct: 2 PGSFKGSTVVELMKKEGTTLGLTVSGGID---------KDGKPRVSNLRQGGIAARSDQL 52
Query: 310 KVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
VG + VNG++L H E ++ L+ G ++ L V
Sbjct: 53 DVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEV 89
Score = 53.6 bits (129), Expect = 2e-08
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 65
G RLL V+G+ LLG +H EA++ L+ G + +L +
Sbjct: 156 PGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIE 192
Score = 46.3 bits (110), Expect = 5e-06
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
VG + VNG++L H E ++ L+ G ++ L V
Sbjct: 54 VGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEV 89
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 181 bits (460), Expect = 3e-55
Identities = 46/199 (23%), Positives = 81/199 (40%), Gaps = 20/199 (10%)
Query: 162 DVVLPK--SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
+VVL G + G + IS+I A G L++GDR++A+
Sbjct: 9 EVVLTADPVTGFGIQLQGSVFATETLSS----PPLISYIEADSPAERCGVLQIGDRVMAI 64
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE-------GFQEITLIRQEGEKLGMH 272
NG T EEA L + + ++ + G + L ++ +LG+
Sbjct: 65 NGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGIT 124
Query: 273 IKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAV 332
I + G+P + I+ I G A R G L++G +LL ++ + L S ++AV
Sbjct: 125 ISSPSSRKPGDP-------LVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAV 177
Query: 333 NTLRYSGHQISLTVCKGFE 351
L+ + L + K +
Sbjct: 178 QILQQCEDLVKLKIRKDED 196
Score = 88.7 bits (220), Expect = 9e-21
Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 8/131 (6%)
Query: 123 GLPSNSTVAAHISSSLKPSILVTYNFFSPSVRSSSLFLQDVVLPKSGP--LGFSIIGGTD 180
SS+ + + F S V LPK LG +I +
Sbjct: 71 DSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPSS 130
Query: 181 HSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPC 240
+ + IS I G VA +G L +GD++LA++ + + E+AV L +
Sbjct: 131 ------RKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCE 184
Query: 241 PEILLKIQHDP 251
+ LKI+ D
Sbjct: 185 DLVKLKIRKDE 195
Score = 52.9 bits (127), Expect = 2e-08
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFE 69
+G +LL ++ + L S ++AV L+ + L + K +
Sbjct: 156 LGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDED 196
Score = 45.5 bits (108), Expect = 8e-06
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
+G R++ +NG+ ++ +EA LR S +T+
Sbjct: 57 IGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTL 92
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 168 bits (426), Expect = 3e-50
Identities = 38/192 (19%), Positives = 76/192 (39%), Gaps = 23/192 (11%)
Query: 162 DVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
+ L P+G + GG ++ G I+H+ P G A +L++ D I +N
Sbjct: 21 LIELKVEKKPMGVIVCGGKNNHV------TTGCVITHVYPEGQVAADKRLKIFDHICDIN 74
Query: 221 GRDVSK--VTHEEAVLALLEPCPEI--LLKIQHDPHPEGFQEITLIRQEGEKLGMHIKGG 276
G + +T + + L + DP + L+++ G++LG+ +
Sbjct: 75 GTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSP- 133
Query: 277 LRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLR 336
N+ G I + G + D +L+ G + + NG +L G Q +
Sbjct: 134 -----------NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFK 182
Query: 337 YSGHQISLTVCK 348
+ ++S+ V +
Sbjct: 183 GANGKVSMEVTR 194
Score = 52.2 bits (125), Expect = 4e-08
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
G + + NG +L G Q + + ++S+ V +
Sbjct: 157 RGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTR 194
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 163 bits (414), Expect = 2e-44
Identities = 77/254 (30%), Positives = 116/254 (45%), Gaps = 11/254 (4%)
Query: 125 PSNSTVAAHISSSLKPSILVTYNFFSPSVRSSSLF---LQDVVLPKSG-PLGFSIIGGTD 180
+S ++ P I+ T +P + + +++ L + LGFSI GGTD
Sbjct: 22 LKHSPAHLPNQANSPPVIVNTDTLEAPGYVNGTEGEMEYEEITLERGNSGLGFSIAGGTD 81
Query: 181 HSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPC 240
+ P P IFI+ I+PGG AA G+LR+ D IL VN DV +VTH AV AL E
Sbjct: 82 N---PHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG 138
Query: 241 PEILLKIQHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSG 300
+ L + P + + + LG I G GN D +++TKI G
Sbjct: 139 SIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIA----GGVGNQHIPGDNSIYVTKIIEG 194
Query: 301 GAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRAS 360
GAA +DGRL++G ++L VN + L H++AV L+ + + L V K + A
Sbjct: 195 GAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAP 254
Query: 361 TSEGSRSVTQSMSS 374
+ +
Sbjct: 255 PDITTSYSQHLDNE 268
Score = 122 bits (306), Expect = 4e-30
Identities = 73/409 (17%), Positives = 127/409 (31%), Gaps = 57/409 (13%)
Query: 27 HPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSV 86
+G ++L VN + L H++AV L+ + + L + + +
Sbjct: 203 LQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLK----VAKPSNAYLSDSYAPPDIT 258
Query: 87 TQSMSSLDREDLDTDVFKQGQWSTVVTAHQRLDTGYGLPSNSTVAAHISSSLKPSILVTY 146
T LD E + + + R + P + +P
Sbjct: 259 TSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYS----PVAKDLLGEEDIPREPRR---- 310
Query: 147 NFFSPSVRSSSLFLQDVVLPKSG-PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAA 205
+V+ + LGF+I+GG D GIFIS I+ GG A
Sbjct: 311 ----------------IVIHRGSTGLGFNIVGGEDG---------EGIFISFILAGGPAD 345
Query: 206 LSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQEITLIRQE 265
LSG+LR GD+IL+VNG D+ +HE+A +AL + + Q+ P E +
Sbjct: 346 LSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLR 405
Query: 266 GEKLGMHIKGGLRGQRGNPLDKN--DEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSL 323
+ + + G R NP K G + + G L ++
Sbjct: 406 EQLMNSSLGSGTASLRSNPKRGFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDA--- 462
Query: 324 LGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQSMSSLDREDLDTD 383
G + + R + + + + D
Sbjct: 463 -GDEEWWQARRVHSDSETDDIGFIPSKRRVERREWS-----------RLKAKDWGSSSGS 510
Query: 384 VFKQEEEMKKELVEWEKEEQEERKENL--ELDEVREKSTPEMPHYFQDA 430
+++ + E V + L D + E P F
Sbjct: 511 QGREDSVLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSC 559
Score = 99.2 bits (246), Expect = 2e-22
Identities = 62/400 (15%), Positives = 124/400 (31%), Gaps = 40/400 (10%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQ 88
V +L VN + + +H AV L+ +G + L V + + +G + +
Sbjct: 110 VNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGF 169
Query: 89 SMSSLDREDLDTDVFKQGQWSTVVTAHQRLDTGYGLPSNSTVAAHISSSLKPSILVTYNF 148
S++ + + ++ G AAH L+ +
Sbjct: 170 SIAGGVGNQHI-------PGDNSIYVTKIIEGG---------AAHKDGRLQIGDKILA-- 211
Query: 149 FSPSVRSSSLFLQDVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSG 208
SV + +D V ++ D + + P +
Sbjct: 212 -VNSVGLEDVMHEDAVA--------ALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYS 262
Query: 209 KLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQEITLIRQEGEK 268
+ + + P + LL + P + I + R
Sbjct: 263 QHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLL--GEEDIPREPRRIVIHR-GSTG 319
Query: 269 LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH 328
LG +I GG ++ EG+FI+ I +GG A G L+ G ++L VNG+ L ASH
Sbjct: 320 LGFNIVGG----------EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASH 369
Query: 329 QEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQSMSSLDREDLDTDVFKQE 388
++A L+ +G +++ E + + S+ S
Sbjct: 370 EQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLGSGTASLRSNPKRGFY 429
Query: 389 EEMKKELVEWEKEEQEERKENLELDEVREKSTPEMPHYFQ 428
+ + + + + +V ++Q
Sbjct: 430 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQ 469
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 141 bits (356), Expect = 4e-38
Identities = 41/189 (21%), Positives = 79/189 (41%), Gaps = 23/189 (12%)
Query: 158 LFLQDVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRIL 217
+ K LG ++ S P + +++++ GG AA SGKL +GD+I+
Sbjct: 205 CKELQLEKHKGEILGVVVVESGWGS------ILPTVILANMMNGGPAARSGKLSIGDQIM 258
Query: 218 AVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQEITLIRQEGEKLGMHIKGGL 277
++NG + + + + +K+ P + +LG ++ G
Sbjct: 259 SINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNG- 317
Query: 278 RGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRY 337
I + GG A+R G ++VG R++E+NG S++ +H++ V L
Sbjct: 318 ---------------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSN 361
Query: 338 SGHQISLTV 346
S +I +
Sbjct: 362 SVGEIHMKT 370
Score = 51.5 bits (122), Expect = 3e-07
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
VG R++E+NG S++ +H++ V L S +I +
Sbjct: 335 VGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKT 370
Score = 40.3 bits (93), Expect = 0.001
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
+G +++ +NG SL+G ++ +Q + +
Sbjct: 253 IGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKL 288
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 128 bits (323), Expect = 3e-36
Identities = 54/101 (53%), Positives = 71/101 (70%)
Query: 253 PEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVG 312
G +E+ + + GE+LG+ I+GG RG GNP D DEG+FI+K++ GAA RDGRL+VG
Sbjct: 7 GPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVG 66
Query: 313 MRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERG 353
+RLLEVN SLLG +H EAV LR G +++ VC GFE G
Sbjct: 67 LRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFESG 107
Score = 93.6 bits (233), Expect = 2e-23
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 152 SVRSSSLFLQDVVLPK--SGPLGFSIIGGTDHSC-IPFGQHKPGIFISHIVPGGVAALSG 208
S SS L+++ + K LG SI GG P GIFIS + P G A G
Sbjct: 2 SSGSSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDG 61
Query: 209 KLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
+LR+G R+L VN + + +TH EAV L + + +
Sbjct: 62 RLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFES 106
Score = 59.3 bits (144), Expect = 3e-11
Identities = 25/43 (58%), Positives = 30/43 (69%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERG 71
VG+RLLEVN SLLG +H EAV LR G +++ VC GFE G
Sbjct: 65 VGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFESG 107
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 124 bits (312), Expect = 5e-34
Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 35/192 (18%)
Query: 162 DVVLPK--SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
+V+L K G +G + GIF+ + A+L G LR GD++L +
Sbjct: 7 EVILCKDQDGKIGLRLKSI-----------DNGIFVQLVQANSPASLVG-LRFGDQVLQI 54
Query: 220 NGRDVSKVTHEEAVLALLEPCPE-ILLKIQHDPHPEGFQEITLIRQEGEKLGMHIKGGLR 278
NG + + + ++A L + E I + I+ P + IT+ + +G K G
Sbjct: 55 NGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFE---RTITMHKDSTGHVGFIFKNG-- 109
Query: 279 GQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYS 338
IT I +A R+G L + E+NG +++G + + L S
Sbjct: 110 --------------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTS 154
Query: 339 GHQISLTVCKGF 350
G +++T+ F
Sbjct: 155 GTVVTITIMPAF 166
Score = 47.5 bits (113), Expect = 1e-06
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 27 HPVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGF 68
+ E+NG +++G + + L SG +++T+ F
Sbjct: 125 LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAF 166
Score = 39.4 bits (92), Expect = 6e-04
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYS-GHQISLTV 64
G ++L++NG + G S +A L+ + G +I++T+
Sbjct: 47 FGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI 83
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 117 bits (296), Expect = 4e-32
Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 250 DPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRL 309
D + L+R++G+ LG+ I G G G+++ + G AA +G +
Sbjct: 10 DSSLFETYNVELVRKDGQSLGIRIVGY----VGTSHTGEASGIYVKSVIPGSAAYHNGHI 65
Query: 310 KVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVT 369
+V +++ V+G+++ G ++ + V LR +G + LT+ + S+
Sbjct: 66 QVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTSPLEPPSDRGTVSG 125
Query: 370 QS 371
S
Sbjct: 126 PS 127
Score = 97.9 bits (244), Expect = 9e-25
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Query: 150 SPSVRSSSLFLQDVVLPKSGP--LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALS 207
S SS +V L + LG I+G GI++ ++PG A +
Sbjct: 6 SGGSDSSLFETYNVELVRKDGQSLGIRIVGYVGT---SHTGEASGIYVKSVIPGSAAYHN 62
Query: 208 GKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
G +++ D+I+AV+G ++ + + V L + L +
Sbjct: 63 GHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSS 109
Score = 59.8 bits (145), Expect = 3e-11
Identities = 12/61 (19%), Positives = 27/61 (44%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQ 88
V +++ V+G+++ G ++ + V LR +G + LT+ + S+
Sbjct: 67 VNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTSPLEPPSDRGTVSGP 126
Query: 89 S 89
S
Sbjct: 127 S 127
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 113 bits (284), Expect = 1e-30
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 162 DVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
+VL + SG LGF+IIGG G GIF+S IV G AA G L++ DRI+ VN
Sbjct: 11 TLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVN 70
Query: 221 GRDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
GRD+S+ TH++AV A I++++
Sbjct: 71 GRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSG 103
Score = 99.8 bits (249), Expect = 1e-25
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+ L R + LG +I GG R N + EG+F++KI G A ++G L++ R++E
Sbjct: 11 TLVLHR-DSGSLGFNIIGG-RPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIE 68
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
VNG L A+H +AV + + I + V +
Sbjct: 69 VNGRDLSRATHDQAVEAFKTAKEPIVVQVLR 99
Score = 50.5 bits (121), Expect = 3e-08
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
+ R++EVNG L A+H +AV + + I + V +
Sbjct: 62 IHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLR 99
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 112 bits (281), Expect = 3e-30
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 249 HDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGR 308
H P + + R+ LG+ I GG + + +G+FI ++ A +
Sbjct: 12 HWGPPR---IVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNA 68
Query: 309 LKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
LK G ++LEV+G+ L ASH EAV ++ +G+ + V
Sbjct: 69 LKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIV 106
Score = 103 bits (259), Expect = 5e-27
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 161 QDVVLPK--SGPLGFSIIGGTD-HSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRIL 217
+ V + + + LG SI+GG + G+ GIFI ++ A + L+ GD+IL
Sbjct: 17 RIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKIL 76
Query: 218 AVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
V+G D+ +H EAV A+ ++ +Q
Sbjct: 77 EVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSST 112
Score = 52.9 bits (127), Expect = 5e-09
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G ++LEV+G+ L ASH EAV ++ +G+ + V
Sbjct: 71 TGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIV 106
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 111 bits (279), Expect = 4e-30
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+ + L R+ + LG+ I GG + G+FI + A ++G LK G R++
Sbjct: 6 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIV 65
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
EV+GM L ASH++AV +R +G+ + V
Sbjct: 66 EVDGMDLRDASHEQAVEAIRKAGNPVVFMV 95
Score = 103 bits (259), Expect = 4e-27
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 161 QDVVLPK--SGPLGFSIIGGTDH-SCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRIL 217
+ V L + S LG SI+GG S + G+ GIFI H++ A +G L+ GDRI+
Sbjct: 6 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIV 65
Query: 218 AVNGRDVSKVTHEEAVLALLEPCPEILLKIQHD 250
V+G D+ +HE+AV A+ + ++ +Q
Sbjct: 66 EVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 98
Score = 52.0 bits (125), Expect = 8e-09
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G R++EV+GM L ASH++AV +R +G+ + V
Sbjct: 60 PGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 95
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 110 bits (278), Expect = 5e-30
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 251 PHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLK 310
P P E+ L + LG+ + GG+ + G+++ + GAA+ DGR+
Sbjct: 1 PKPGDIFEVELAK-NDNSLGISVTGGVNTSVRHG------GIYVKAVIPQGAAESDGRIH 53
Query: 311 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
G R+L VNG+SL GA+H++AV TLR +G + L + KG
Sbjct: 54 KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 92
Score = 101 bits (254), Expect = 1e-26
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 160 LQDVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILA 218
+ +V L K LG S+ GG + S GI++ ++P G A G++ GDR+LA
Sbjct: 6 IFEVELAKNDNSLGISVTGGVNTSVRH-----GGIYVKAVIPQGAAESDGRIHKGDRVLA 60
Query: 219 VNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
VNG + TH++AV L + L ++ P
Sbjct: 61 VNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSP 95
Score = 57.6 bits (140), Expect = 7e-11
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
G R+L VNG+SL GA+H++AV TLR +G + L + KG
Sbjct: 54 KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 92
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 111 bits (280), Expect = 5e-30
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 252 HPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKV 311
G + + + + + LG+ I GG G+P D +FI ++ G A + +L+V
Sbjct: 21 QSMGLRTVEMKKGPTDSLGISIAGG----VGSP--LGDVPIFIAMMHPTGVAAQTQKLRV 74
Query: 312 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFE 351
G R++ + G S G +H +AVN L+ + I + V G +
Sbjct: 75 GDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGD 114
Score = 91.3 bits (227), Expect = 2e-22
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 133 HISSSLKPSILVTYNFFSPSVRSSSLFLQDVVLPK--SGPLGFSIIGGTDHSCIPFGQHK 190
H SS + + ++ S+ L+ V + K + LG SI GG
Sbjct: 6 HHSSGVDLG--------TENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGS-----PLGD 52
Query: 191 PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHD 250
IFI+ + P GVAA + KLR+GDRI+ + G +TH +AV L I +++
Sbjct: 53 VPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAG 112
Query: 251 PHPE 254
Sbjct: 113 GDVS 116
Score = 55.8 bits (135), Expect = 5e-10
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFE 69
VG R++ + G S G +H +AVN L+ + I + V G +
Sbjct: 74 VGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGD 114
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 110 bits (277), Expect = 1e-29
Identities = 29/96 (30%), Positives = 48/96 (50%)
Query: 251 PHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLK 310
+ + L R+ + LG+ I GG + G+FI + A ++G LK
Sbjct: 20 FQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLK 79
Query: 311 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
G R++EV+GM L ASH++AV +R +G+ + V
Sbjct: 80 PGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115
Score = 104 bits (261), Expect = 3e-27
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 150 SPSVRSSSLFLQDVVLPK--SGPLGFSIIGGTDH-SCIPFGQHKPGIFISHIVPGGVAAL 206
+ ++ S+ + V L + S LG SI+GG S + G+ GIFI H++ A
Sbjct: 15 TENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGK 74
Query: 207 SGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHD 250
+G L+ GDRI+ V+G D+ +HE+AV A+ + ++ +Q
Sbjct: 75 NGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 118
Score = 52.1 bits (125), Expect = 1e-08
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G R++EV+GM L ASH++AV +R +G+ + V
Sbjct: 80 PGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 108 bits (271), Expect = 8e-29
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 251 PHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLK 310
P P E+ L + LG+ + + G G+++ + GAA+ DGR+
Sbjct: 5 PKPGDIFEVELAK-NDNSLGISVTVL-FDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIH 62
Query: 311 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
G R+L VNG+SL GA+H++AV TLR +G + L + KG
Sbjct: 63 KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 101
Score = 104 bits (261), Expect = 2e-27
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 160 LQDVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILA 218
+ +V L K LG S+ D + GI++ ++P G A G++ GDR+LA
Sbjct: 10 IFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLA 69
Query: 219 VNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
VNG + TH++AV L + L ++ P
Sbjct: 70 VNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSP 104
Score = 56.6 bits (137), Expect = 2e-10
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
G R+L VNG+SL GA+H++AV TLR +G + L + KG
Sbjct: 63 KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 101
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 107 bits (270), Expect = 9e-29
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 161 QDVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
+++VL + + LGFSI GG D+ P PGIFI+ I+PGG AA+ G+L + D +L V
Sbjct: 6 EEIVLERGNSGLGFSIAGGIDN---PHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRV 62
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
N DVS+V H AV AL E P + L ++ P
Sbjct: 63 NEVDVSEVVHSRAVEALKEAGPVVRLVVRRRQPP 96
Score = 100 bits (251), Expect = 4e-26
Identities = 37/91 (40%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
++EI L R LG I GG NP +D G+FITKI GGAA DGRL V +
Sbjct: 5 YEEIVLER-GNSGLGFSIAGG----IDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCV 59
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
L VN + + H AV L+ +G + L V
Sbjct: 60 LRVNEVDVSEVVHSRAVEALKEAGPVVRLVV 90
Score = 50.0 bits (120), Expect = 4e-08
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
V +L VN + + H AV L+ +G + L V
Sbjct: 55 VNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVV 90
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 106 bits (267), Expect = 4e-28
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 252 HPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKV 311
+ + + + GE LGM + GG + D +++ + GG RDGR+K
Sbjct: 21 QSMHEKVVNIQKDPGESLGMTVAGGASHREW------DLPIYVISVEPGGVISRDGRIKT 74
Query: 312 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
G LL V+G+ L S EAV L+ + I L +
Sbjct: 75 GDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALE 111
Score = 94.4 bits (235), Expect = 1e-23
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 150 SPSVRSSSLFLQDVVLPK--SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALS 207
+ ++ S+ + V + K LG ++ GG H + I++ + PGGV +
Sbjct: 15 TENLYFQSMHEKVVNIQKDPGESLGMTVAGGASH-----REWDLPIYVISVEPGGVISRD 69
Query: 208 GKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQ 248
G+++ GD +L V+G ++++V+ EAV L I+LK
Sbjct: 70 GRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKAL 110
Score = 52.8 bits (127), Expect = 5e-09
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
G LL V+G+ L S EAV L+ + I L +
Sbjct: 74 TGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALE 111
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 105 bits (265), Expect = 7e-28
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 240 CPEILLKIQHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINS 299
C E I++ + L++ LG + G RG + G+F+ +I
Sbjct: 5 CDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRG------ELGIFVQEIQE 58
Query: 300 GGAAKRDGRLKVGMRLLEVNGMSLL-GASHQEAVNTLRYSGHQISLTVCKG 349
G A RDGRLK ++L +NG +L +HQ+A++ L+ + + L + +G
Sbjct: 59 GSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARG 109
Score = 99.0 bits (247), Expect = 3e-25
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 163 VVLPK--SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
L K SG LGFS++G + + GIF+ I G VA G+L+ D+ILA+N
Sbjct: 24 FELLKPPSGGLGFSVVGLRSE-----NRGELGIFVQEIQEGSVAHRDGRLKETDQILAIN 78
Query: 221 GRDVSK-VTHEEAVLALLEPCPEILLKIQHDPHPEGFQ 257
G+ + + +TH++A+ L + + L I P+ ++
Sbjct: 79 GQALDQTITHQQAISILQKAKDTVQLVIARGSLPQYYK 116
Score = 48.1 bits (115), Expect = 3e-07
Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 29 VGMRLLEVNGMSLL-GASHQEAVNTLRYSGHQISLTVCKG 67
++L +NG +L +HQ+A++ L+ + + L + +G
Sbjct: 70 ETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARG 109
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 104 bits (262), Expect = 1e-27
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 160 LQDVVLPKSGP--LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRIL 217
+ V L K+G G I+ G GIFI IVP A L G+L++GDRIL
Sbjct: 6 IHMVTLDKTGKKSFGICIVRGEVKD--SPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRIL 63
Query: 218 AVNGRDVSKVTHEEAVLALLEPCPEILLKIQH 249
++NG+DV T + + + E +I L+IQ
Sbjct: 64 SLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95
Score = 99.3 bits (248), Expect = 1e-25
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+TL + + G+ I G + + + G+FI I A GRLKVG R+L
Sbjct: 8 MVTLDKTGKKSFGICIVRG---EVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILS 64
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTV 346
+NG + ++ Q ++ ++ + +I L +
Sbjct: 65 LNGKDVRNSTEQAVIDLIKEADFKIELEI 93
Score = 50.8 bits (122), Expect = 2e-08
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
VG R+L +NG + ++ Q ++ ++ + +I L +
Sbjct: 58 VGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEI 93
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 105 bits (264), Expect = 1e-27
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 161 QDVVLPKSG---PLGFSIIGGTDHSCIPFG-QHKPGIFISHIVPGGVAALSGKLRMGDRI 216
+ V L K G PLGF I G+ P G + PGIFIS +VPGG+A +G L + D +
Sbjct: 31 RRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEV 90
Query: 217 LAVNGRDVSKVTHEEAVLALLEPCPEILLKIQH 249
L VNG +VS + ++ ++ +++ ++
Sbjct: 91 LEVNGIEVSGKSLDQVTDMMIANSRNLIITVRP 123
Score = 98.4 bits (245), Expect = 5e-25
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 247 IQHDPHPEGFQEITLIRQE-GEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKR 305
I D PE + + L + + LG +I+ G + + G+FI+++ GG A+
Sbjct: 21 IDVDILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQS 80
Query: 306 DGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
G L V +LEVNG+ + G S + + + + + +TV
Sbjct: 81 TGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITV 121
Score = 48.7 bits (116), Expect = 2e-07
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
V +LEVNG+ + G S + + + + + +TV
Sbjct: 86 VNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITV 121
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 105 bits (263), Expect = 1e-27
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 241 PEILLKIQHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSG 300
+ ++ ++ P I L + + LG+ + G D++ +F+ IN
Sbjct: 11 TDQKIRQRYADLPGELHIIELEK-DKNGLGLSLAGNK--------DRSRMSIFVVGINPE 61
Query: 301 GAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFE 351
G A DGR+++G LLE+N L G SHQ A ++ + ++ L + +
Sbjct: 62 GPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNED 112
Score = 90.6 bits (225), Expect = 3e-22
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 160 LQDVVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILA 218
L + L K LG S+ G D S + IF+ I P G AA G++R+GD +L
Sbjct: 26 LHIIELEKDKNGLGLSLAGNKDRS-------RMSIFVVGINPEGPAAADGRMRIGDELLE 78
Query: 219 VNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
+N + + +H+ A + ++ L +
Sbjct: 79 INNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAV 114
Score = 53.2 bits (128), Expect = 5e-09
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFE 69
+G LLE+N L G SHQ A ++ + ++ L + +
Sbjct: 72 IGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNED 112
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 104 bits (260), Expect = 2e-27
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 255 GFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMR 314
G EI + ++ +LG I GG G RGNP +D+G+F+T++ G A L+ G +
Sbjct: 1 GSMEIRVRVEKDPELGFSISGG-VGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDK 57
Query: 315 LLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
+++ NG S + H +AV+ L+ + + L + +
Sbjct: 58 IIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 91
Score = 92.1 bits (229), Expect = 4e-23
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V + K LGFSI GG PF GIF++ + P G A+ L+ GD+I+ NG
Sbjct: 7 VRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGY 64
Query: 223 DVSKVTHEEAVLALLEPCPEILLKIQHDP 251
+ H +AV L + L I +
Sbjct: 65 SFINIEHGQAVSLLKTFQNTVELIIVREV 93
Score = 48.2 bits (115), Expect = 1e-07
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
G ++++ NG S + H +AV+ L+ + + L + +
Sbjct: 54 PGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 91
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 104 bits (262), Expect = 2e-27
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 167 KSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSK 226
LG I+GG + P + G +I+ I+PGG A +GKL G ++L NG ++
Sbjct: 28 SGNGLGIRIVGGKEI---PGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTS 84
Query: 227 VTHEEAVLALLEPCPEILLKIQHDPHPEG 255
T+EE + + E + ++ D + G
Sbjct: 85 KTYEEVQSIISQQSGEAEICVRLDLNMSG 113
Score = 96.0 bits (239), Expect = 3e-24
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 251 PHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLK 310
+ ++ G LG+ I GG + P + G +I KI GG+A++ G+L
Sbjct: 14 ARIKITRDSKDHTVSGNGLGIRIVGG----KEIPGHSGEIGAYIAKILPGGSAEQTGKLM 69
Query: 311 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
GM++LE NG+ L +++E + + + + V
Sbjct: 70 EGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICV 105
Score = 49.8 bits (119), Expect = 7e-08
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
GM++LE NG+ L +++E + + + + V
Sbjct: 70 EGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICV 105
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 104 bits (261), Expect = 2e-27
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
E+TL + EG G I+GG R V IT + GG A R+G +K G RLL
Sbjct: 6 EVTLHK-EGNTFGFVIRGGAHDDRNK-----SRPVVITSVRPGGPADREGTIKPGDRLLS 59
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTV 346
V+G+ LLG +H EA++ L+ G + +L +
Sbjct: 60 VDGIRLLGTTHAEAMSILKQCGQEAALLI 88
Score = 103 bits (258), Expect = 4e-27
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 162 DVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
+V L K GF I GG + I+ + PGG A G ++ GDR+L+V+
Sbjct: 6 EVTLHKEGNTFGFVIRGGAHDDR----NKSRPVVITSVRPGGPADREGTIKPGDRLLSVD 61
Query: 221 GRDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
G + TH EA+ L + E L I++D
Sbjct: 62 GIRLLGTTHAEAMSILKQCGQEAALLIEYDVSE 94
Score = 53.4 bits (129), Expect = 2e-09
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G RLL V+G+ LLG +H EA++ L+ G + +L +
Sbjct: 53 PGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLI 88
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 104 bits (261), Expect = 2e-27
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
Query: 161 QDVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
+++ L + LGF+I+GGTD + + GI++S I G AAL G+L+ GD+IL+V
Sbjct: 9 EEINLTRGPSGLGFNIVGGTDQ---QYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 65
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
NG+D+ + H++AV + L++QH
Sbjct: 66 NGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLES 99
Score = 101 bits (254), Expect = 2e-26
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+EI L R LG +I GG ND G+++++I GAA DGRL+ G ++L
Sbjct: 9 EEINLTR-GPSGLGFNIVGG----TDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKIL 63
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFE 351
VNG L HQ+AV+ R +G+ +SL V E
Sbjct: 64 SVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLE 98
Score = 50.0 bits (120), Expect = 3e-08
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFE 69
G ++L VNG L HQ+AV+ R +G+ +SL V E
Sbjct: 58 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLE 98
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 103 bits (260), Expect = 3e-27
Identities = 39/96 (40%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 253 PEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVG 312
EI L + + LG I GG GN D +++TKI GGAA++DGRL+VG
Sbjct: 22 SMTVVEIKLFK-GPKGLGFSIAGG----VGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVG 76
Query: 313 MRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
RLL VN SL +H+EAV L+ + + L V K
Sbjct: 77 DRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGK 112
Score = 99.4 bits (248), Expect = 2e-25
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 150 SPSVRSSSLFLQDVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSG 208
+ ++ S+ + ++ L K LGFSI GG + I+++ I+ GG A G
Sbjct: 15 TENLYFQSMTVVEIKLFKGPKGLGFSIAGGVGN---QHIPGDNSIYVTKIIDGGAAQKDG 71
Query: 209 KLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
+L++GDR+L VN + +VTHEEAV L + LK+
Sbjct: 72 RLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPT 114
Score = 52.8 bits (127), Expect = 7e-09
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
VG RLL VN SL +H+EAV L+ + + L V K
Sbjct: 75 VGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGK 112
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 103 bits (258), Expect = 4e-27
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 160 LQDVVLPKSGP---LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRI 216
+ V L K LG ++ TD +PG+FI ++ GG+AA G+L DR+
Sbjct: 4 ILQVALHKRDSGEQLGIKLVRRTD---------EPGVFILDLLEGGLAAQDGRLSSNDRV 54
Query: 217 LAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
LA+NG D+ T E A + + L I PE
Sbjct: 55 LAINGHDLKYGTPELAAQIIQASGERVNLTIARPGKPE 92
Score = 93.5 bits (233), Expect = 1e-23
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 258 EITLIRQE-GEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
++ L +++ GE+LG+ + ++ GVFI + GG A +DGRL R+L
Sbjct: 6 QVALHKRDSGEQLGIKLVRR----------TDEPGVFILDLLEGGLAAQDGRLSSNDRVL 55
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
+NG L + + A ++ SG +++LT+ +
Sbjct: 56 AINGHDLKYGTPELAAQIIQASGERVNLTIARP 88
Score = 50.4 bits (121), Expect = 2e-08
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
R+L +NG L + + A ++ SG +++LT+ +
Sbjct: 50 SNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARP 88
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 104 bits (260), Expect = 5e-27
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
Query: 247 IQHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRD 306
+ + + EI L LG+ +KG + G D G+FI I GGAA +D
Sbjct: 17 LSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGT-----DLGIFIKSIIHGGAAFKD 71
Query: 307 GRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ-------ISLTVCKG 349
GRL++ +L+ VNG +LLG S+ EA+ TLR S I L + +
Sbjct: 72 GRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR 121
Score = 90.6 bits (225), Expect = 3e-22
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 136 SSLKPSILVTYNFFSPSVRSSSLFLQDVVLPKSGP--LGFSIIGGTDHSCIPFGQHKPGI 193
SS + + ++ S+ SS ++ L SG LG S+ G GI
Sbjct: 2 SSGSSGLKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRE----TGTDLGI 57
Query: 194 FISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLAL 236
FI I+ GG A G+LRM D+++AVNG + ++ EA+ L
Sbjct: 58 FIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETL 100
Score = 49.0 bits (117), Expect = 1e-07
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ-------ISLTVCKG 67
+ +L+ VNG +LLG S+ EA+ TLR S I L + +
Sbjct: 76 MNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR 121
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 102 bits (257), Expect = 7e-27
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
++ + R+E E G I L I +I G A R +LKVG R+L
Sbjct: 13 DVVIHRKENEGFGFVIISSLNRPESG--STITVPHKIGRIIDGSPADRCAKLKVGDRILA 70
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFE 351
VNG S++ H + V ++ +G ++L + E
Sbjct: 71 VNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEE 104
Score = 94.4 bits (235), Expect = 1e-23
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 151 PSVRSSSLFLQDVVLPKSGP--LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSG 208
S S SL DVV+ + GF II + I I+ G A
Sbjct: 2 SSGSSGSLQTSDVVIHRKENEGFGFVIISSLNRPESGST-ITVPHKIGRIIDGSPADRCA 60
Query: 209 KLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
KL++GDRILAVNG+ + + H + V + + + L+I
Sbjct: 61 KLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQE 103
Score = 52.8 bits (127), Expect = 6e-09
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFE 69
VG R+L VNG S++ H + V ++ +G ++L + E
Sbjct: 64 VGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEE 104
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 103 bits (258), Expect = 8e-27
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
+ + K G L ++ GG D + +S + GG A G + GD I+A+NG+
Sbjct: 22 LRIKKEGSLDLALEGGVDS-------PVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGK 74
Query: 223 DVSKVTHEEAVLAL----LEPCPEILLKIQHDPHPEGFQEITL 261
V+ T EA AL + I L + P E E+T
Sbjct: 75 IVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDELTF 117
Score = 84.4 bits (209), Expect = 4e-20
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 251 PHPEGFQEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRL 309
P +++ L+R + E L + ++GG +P+ V ++ + GGAA+R G +
Sbjct: 11 PEQIAGKDVRLLRIKKEGSLDLALEGG----VDSPVG----KVVVSAVYEGGAAERHGGV 62
Query: 310 KVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
G ++ +NG + + EA L+ + +Q +
Sbjct: 63 VKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWI 99
Score = 44.4 bits (105), Expect = 5e-06
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G ++ +NG + + EA L+ + +Q +
Sbjct: 64 KGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWI 99
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 101 bits (255), Expect = 9e-27
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 163 VVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
V LPK LGF+I+GG + + I+IS ++PGGVA G L+ GD++L+VNG
Sbjct: 9 VELPKTDEGLGFNIMGGKEQNS--------PIYISRVIPGGVADRHGGLKRGDQLLSVNG 60
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
V HE+AV L + L ++ P
Sbjct: 61 VSVEGEQHEKAVELLKAAQGSVKLVVRSGPSS 92
Score = 86.1 bits (214), Expect = 4e-21
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+ L + + LG +I GG + + ++I+++ GG A R G LK G +LL
Sbjct: 7 GVVELPKTDE-GLGFNIMGG---------KEQNSPIYISRVIPGGVADRHGGLKRGDQLL 56
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
VNG+S+ G H++AV L+ + + L V G
Sbjct: 57 SVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSG 89
Score = 48.4 bits (116), Expect = 1e-07
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
G +LL VNG+S+ G H++AV L+ + + L V G
Sbjct: 51 RGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSG 89
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 102 bits (256), Expect = 1e-26
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+ L R LGM + G+ G P G++I + G A DGRL +G R+LE
Sbjct: 11 TVELER-GPSGLGMGLIDGMHTHLGAP------GLYIQTLLPGSPAAADGRLSLGDRILE 63
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEG 364
VNG SLLG + AV+ +R+ G ++ V K + + S G
Sbjct: 64 VNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSGPSSG 110
Score = 90.9 bits (226), Expect = 1e-22
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 162 DVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
V L + LG +I G PG++I ++PG AA G+L +GDRIL VN
Sbjct: 11 TVELERGPSGLGMGLIDGMH-----THLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVN 65
Query: 221 GRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
G + + + AV + ++ +
Sbjct: 66 GSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVET 99
Score = 56.6 bits (137), Expect = 2e-10
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEG 82
+G R+LEVNG SLLG + AV+ +R+ G ++ V K + + S G
Sbjct: 57 LGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSGPSSG 110
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 102 bits (255), Expect = 1e-26
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 249 HDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGR 308
H H QEI + ++ +LG I GG G RGNP +D+G+F+T++ G A
Sbjct: 3 HMGHELAKQEIRVRVEKDPELGFSISGG-VGGRGNPFRPDDDGIFVTRVQPEGPA--SKL 59
Query: 309 LKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
L+ G ++++ NG S + H +AV+ L+ + + L + +
Sbjct: 60 LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 99
Score = 93.3 bits (232), Expect = 2e-23
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 162 DVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
V + K LGFSI GG PF GIF++ + P G A+ L+ GD+I+ NG
Sbjct: 14 RVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANG 71
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
+ H +AV L + L I +
Sbjct: 72 YSFINIEHGQAVSLLKTFQNTVELIIVREV 101
Score = 47.8 bits (114), Expect = 2e-07
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
G ++++ NG S + H +AV+ L+ + + L + +
Sbjct: 62 PGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 99
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 102 bits (255), Expect = 1e-26
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 250 DPHPEGFQEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGR 308
D + L R++ LG+ I G R G+++ + G AA DGR
Sbjct: 7 DASGFSLYSVELFREKDTSSLGISISGM----RDQSTTGEATGIYVKSLIPGSAAALDGR 62
Query: 309 LKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
++ ++L V+ +++ G + + V LR +G+ + L + +
Sbjct: 63 IEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIR 102
Score = 100 bits (250), Expect = 7e-26
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 150 SPSVRSSSLFLQDVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSG 208
SL+ ++ K + LG SI G D GI++ ++PG AAL G
Sbjct: 5 YSDASGFSLYSVELFREKDTSSLGISISGMRDQ---STTGEATGIYVKSLIPGSAAALDG 61
Query: 209 KLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
++ D+IL V+ +V + + V L + L +
Sbjct: 62 RIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRL 104
Score = 52.7 bits (127), Expect = 4e-09
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
++L V+ +++ G + + V LR +G+ + L + +
Sbjct: 65 PNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIR 102
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 102 bits (256), Expect = 1e-26
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 249 HDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGR 308
+ + ITL R + LG I GG G D +++ + + GAA DGR
Sbjct: 19 YFQSMPQCKSITLER-GPDGLGFSIVGGYGSPHG------DLPIYVKTVFAKGAASEDGR 71
Query: 309 LKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFE 351
LK G +++ VNG SL G +H+EAV L+ + ++L V E
Sbjct: 72 LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE 114
Score = 95.1 bits (237), Expect = 5e-24
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 161 QDVVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
+ + L + LGFSI+GG I++ + G A+ G+L+ GD+I+AV
Sbjct: 27 KSITLERGPDGLGFSIVGGYGS-----PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAV 81
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
NG+ + VTHEEAV L + L +
Sbjct: 82 NGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDET 115
Score = 53.5 bits (129), Expect = 4e-09
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFE 69
G +++ VNG SL G +H+EAV L+ + ++L V E
Sbjct: 74 RGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE 114
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 101 bits (253), Expect = 2e-26
Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
++ L + + LG+ I G + ++ G+F+ I A + DGR+++G +++
Sbjct: 7 DVELTK-NVQGLGITIAGYIGDKKLE-----PSGIFVKSITKSSAVEHDGRIQIGDQIIA 60
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFE 351
V+G +L G ++Q+AV LR++G + LT+ + E
Sbjct: 61 VDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 94
Score = 91.9 bits (229), Expect = 4e-23
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 162 DVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
DV L K LG +I G GIF+ I G++++GD+I+AV+
Sbjct: 7 DVELTKNVQGLGITIAGYIGDK----KLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVD 62
Query: 221 GRDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
G ++ T+++AV L +LL +
Sbjct: 63 GTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 95
Score = 55.0 bits (133), Expect = 6e-10
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFE 69
+G +++ V+G +L G ++Q+AV LR++G + LT+ + E
Sbjct: 54 IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 94
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 102 bits (255), Expect = 2e-26
Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 161 QDVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
+++ L + LGF+I+GGTD + + GI++S I G AAL G+L+ GD+IL+V
Sbjct: 19 EEINLTRGPSGLGFNIVGGTDQ---QYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 75
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
NG+D+ + H++AV + L++QH +
Sbjct: 76 NGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQ 110
Score = 101 bits (253), Expect = 4e-26
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 250 DPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRL 309
+ +EI L R LG +I GG ND G+++++I GAA DGRL
Sbjct: 12 VDYLVTEEEINLTRGPS-GLGFNIVGG----TDQQYVSNDSGIYVSRIKENGAAALDGRL 66
Query: 310 KVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTS 362
+ G ++L VNG L HQ+AV+ R +G+ +SL V + + +S
Sbjct: 67 QEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPISGPSS 119
Score = 51.3 bits (123), Expect = 2e-08
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTS 80
G ++L VNG L HQ+AV+ R +G+ +SL V + + +S
Sbjct: 68 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPISGPSS 119
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 101 bits (253), Expect = 2e-26
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 163 VVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
+ + K LG SI+GG+D I I + G A G+L GD+IL VNG
Sbjct: 8 IEISKGRTGLGLSIVGGSDTLLGA-------IIIHEVYEEGAACKDGRLWAGDQILEVNG 60
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
D+ K TH+EA+ L + + L + D P
Sbjct: 61 IDLRKATHDEAINVLRQTPQRVRLTLYRDEAPY 93
Score = 90.8 bits (226), Expect = 1e-22
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
I + + LG+ I GG D + I ++ GAA +DGRL G ++LE
Sbjct: 7 TIEISKGRTG-LGLSIVGGS--------DTLLGAIIIHEVYEEGAACKDGRLWAGDQILE 57
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
VNG+ L A+H EA+N LR + ++ LT+ +
Sbjct: 58 VNGIDLRKATHDEAINVLRQTPQRVRLTLYR 88
Score = 50.0 bits (120), Expect = 3e-08
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
G ++LEVNG+ L A+H EA+N LR + ++ LT+ +
Sbjct: 51 AGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYR 88
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 101 bits (253), Expect = 2e-26
Identities = 38/97 (39%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 163 VVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
+V+ + S LGF+I+GG + GIFIS I+ GG A LSG+LR GD+IL+VNG
Sbjct: 15 IVIHRGSTGLGFNIVGG---------EXGEGIFISFILAGGPADLSGELRKGDQILSVNG 65
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQE 258
D+ +HE+A +AL + + Q+ P E
Sbjct: 66 VDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFE 102
Score = 93.9 bits (234), Expect = 1e-23
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 245 LKIQHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAK 304
+ + + P + I + R LG +I GG + EG+FI+ I +GG A
Sbjct: 1 MGLGEEDIPREPRRIVIHRGST-GLGFNIVGG----------EXGEGIFISFILAGGPAD 49
Query: 305 RDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
G L+ G ++L VNG+ L ASH++A L+ +G +++
Sbjct: 50 LSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA 91
Score = 49.6 bits (119), Expect = 5e-08
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G ++L VNG+ L ASH++A L+ +G +++
Sbjct: 56 KGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA 91
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 100 bits (252), Expect = 3e-26
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
I L ++ G+ LG+ I G +ND GVF++ I GG A DGRL G ++L
Sbjct: 7 TIGLQKKPGKGLGLSIVGK----------RNDTGVFVSDIVKGGIADADGRLMQGDQILM 56
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
VNG + A+ + L+ S ++L V +
Sbjct: 57 VNGEDVRNATQEAVAALLKCSLGTVTLEVGR 87
Score = 91.2 bits (227), Expect = 7e-23
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 163 VVLPKSGP--LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
+ L K LG SI+G + G+F+S IV GG+A G+L GD+IL VN
Sbjct: 8 IGLQKKPGKGLGLSIVGKRN---------DTGVFVSDIVKGGIADADGRLMQGDQILMVN 58
Query: 221 GRDVSKVTHEEAVLALLEPCPEILLKIQ 248
G DV T E L + L++
Sbjct: 59 GEDVRNATQEAVAALLKCSLGTVTLEVG 86
Score = 49.9 bits (120), Expect = 3e-08
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
G ++L VNG + A+ + L+ S ++L V +
Sbjct: 50 QGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGR 87
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 100 bits (252), Expect = 3e-26
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
E+ L++ + LG I GG GN D ++ITKI GGAA++DGRL++G RL
Sbjct: 4 IMEVNLLK-GPKGLGFSIAGG----IGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRL 58
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
L VN +L H+EAV +L+ + + L V K
Sbjct: 59 LAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 91
Score = 95.4 bits (238), Expect = 3e-24
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 157 SLFLQDVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDR 215
S+ + +V L K LGFSI GG + I+I+ I+ GG A G+L++GDR
Sbjct: 1 SMTIMEVNLLKGPKGLGFSIAGGIGN---QHIPGDNSIYITKIIEGGAAQKDGRLQIGDR 57
Query: 216 ILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQ 248
+LAVN ++ V HEEAV +L + LK+
Sbjct: 58 LLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVA 90
Score = 51.5 bits (124), Expect = 9e-09
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
+G RLL VN +L H+EAV +L+ + + L V K
Sbjct: 54 IGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 91
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 101 bits (254), Expect = 3e-26
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 10/92 (10%)
Query: 163 VVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
+V+ + S LGF+I+GG + GIFIS I+ GG A LSG+LR GD+IL+VNG
Sbjct: 18 IVIHRGSTGLGFNIVGG---------EDGEGIFISFILAGGPADLSGELRKGDQILSVNG 68
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
D+ +HE+A +AL + + Q+ P
Sbjct: 69 VDLRNASHEQAAIALKNAGQTVTIIAQYKPEE 100
Score = 91.7 bits (228), Expect = 1e-22
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 247 IQHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRD 306
+ + P + I + R LG +I GG ++ EG+FI+ I +GG A
Sbjct: 6 LGEEDIPREPRRIVIHR-GSTGLGFNIVGG----------EDGEGIFISFILAGGPADLS 54
Query: 307 GRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFER-GDIERRASTSEGS 365
G L+ G ++L VNG+ L ASH++A L+ +G +++ E E +
Sbjct: 55 GELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDSSG 114
Query: 366 RSVT 369
R VT
Sbjct: 115 RIVT 118
Score = 49.7 bits (119), Expect = 7e-08
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFER-GDIERRASTSEGSRSVT 87
G ++L VNG+ L ASH++A L+ +G +++ E E + R VT
Sbjct: 59 KGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDSSGRIVT 118
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 101 bits (253), Expect = 3e-26
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 12/122 (9%)
Query: 252 HPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKV 311
H E F + L + + E LG+ I G G + G+F+ + GGAA RDGR++V
Sbjct: 2 HMELF-PVELEK-DSEGLGISIIGM---GAGADMGLEKLGIFVKTVTEGGAAHRDGRIQV 56
Query: 312 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQS 371
L+EV+G SL+G + A + LR + ++ + + ER SE ++ + Q+
Sbjct: 57 NDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR-------ERPGEQSEVAQLIQQT 109
Query: 372 MS 373
+
Sbjct: 110 LE 111
Score = 95.5 bits (238), Expect = 4e-24
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 162 DVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
V L K S LG SIIG + G K GIF+ + GG A G++++ D ++ V+
Sbjct: 7 PVELEKDSEGLGISIIGMGAGA--DMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVD 64
Query: 221 GRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQEITLIRQEGEK 268
G + VT A L + I + E + LI+Q E+
Sbjct: 65 GTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQTLEQ 112
Score = 55.1 bits (133), Expect = 9e-10
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQ 88
V L+EV+G SL+G + A + LR + ++ + + ER SE ++ + Q
Sbjct: 56 VNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR-------ERPGEQSEVAQLIQQ 108
Query: 89 SMS 91
++
Sbjct: 109 TLE 111
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 100 bits (251), Expect = 6e-26
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 10/92 (10%)
Query: 163 VVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
++L K S LGF+I+GG + GIF+S I+ GG A LSG+LR GDRIL+VNG
Sbjct: 19 IILHKGSTGLGFNIVGG---------EDGEGIFVSFILAGGPADLSGELRRGDRILSVNG 69
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
++ THE+A AL + + Q+ P
Sbjct: 70 VNLRNATHEQAAAALKRAGQSVTIVAQYRPEE 101
Score = 91.3 bits (227), Expect = 1e-22
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 250 DPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRL 309
++I L + LG +I GG ++ EG+F++ I +GG A G L
Sbjct: 10 GGDAREPRKIILHK-GSTGLGFNIVGG----------EDGEGIFVSFILAGGPADLSGEL 58
Query: 310 KVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEG 364
+ G R+L VNG++L A+H++A L+ +G +++ E + S G
Sbjct: 59 RRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESSGPSSG 113
Score = 50.8 bits (122), Expect = 3e-08
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEG 82
G R+L VNG++L A+H++A L+ +G +++ E + S G
Sbjct: 60 RGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESSGPSSG 113
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 100 bits (250), Expect = 7e-26
Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 254 EGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGM 313
E EI LI+ + LG I GG GN D +++TKI GGAA +DG+L++G
Sbjct: 2 EKIMEIKLIK-GPKGLGFSIAGG----VGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGD 56
Query: 314 RLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
+LL VN +SL +H+EAV L+ + + L V K
Sbjct: 57 KLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAK 91
Score = 94.3 bits (235), Expect = 8e-24
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 160 LQDVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILA 218
+ ++ L K LGFSI GG + I+++ I+ GG A GKL++GD++LA
Sbjct: 4 IMEIKLIKGPKGLGFSIAGGVGN---QHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLA 60
Query: 219 VNGRDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
VN + +VTHEEAV AL + LK+
Sbjct: 61 VNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPT 93
Score = 50.8 bits (122), Expect = 2e-08
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
+G +LL VN +SL +H+EAV L+ + + L V K
Sbjct: 54 IGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAK 91
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 99.7 bits (249), Expect = 8e-26
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+ L + + + LG+ I G G G+F+ + GGAA+RDGR++V +++E
Sbjct: 12 PVELEK-DEDGLGISIIGM---GVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVE 67
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
V+G+SL+G + A LR + + + +
Sbjct: 68 VDGISLVGVTQNFAATVLRNTKGNVRFVIGR 98
Score = 90.1 bits (224), Expect = 3e-22
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 152 SVRSSSLFLQDVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKL 210
S SS L L V L K LG SIIG + G K GIF+ + GG A G++
Sbjct: 2 SSGSSGLELFPVELEKDEDGLGISIIGMGVGA--DAGLEKLGIFVKTVTEGGAAQRDGRI 59
Query: 211 RMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
++ D+I+ V+G + VT A L + I +
Sbjct: 60 QVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKPSG 103
Score = 53.9 bits (130), Expect = 2e-09
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
V +++EV+G+SL+G + A LR + + + +
Sbjct: 61 VNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGR 98
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 99.7 bits (249), Expect = 9e-26
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 160 LQDVVLPKSGP--LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRIL 217
++ V+L K LG SI GG +H I IS I PG A G L +GD IL
Sbjct: 10 IRKVLLLKEDHEGLGISITGGKEHGV--------PILISEIHPGQPADRCGGLHVGDAIL 61
Query: 218 AVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQE 258
AVNG ++ H+EAV L + EI ++ +
Sbjct: 62 AVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVALEHHHHH 102
Score = 93.2 bits (232), Expect = 2e-23
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 245 LKIQHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAK 304
+K P +++ L++++ E LG+ I GG ++ + I++I+ G A
Sbjct: 1 MKKSQGVGPI--RKVLLLKEDHEGLGISITGGK---------EHGVPILISEIHPGQPAD 49
Query: 305 RDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
R G L VG +L VNG++L H+EAV L +I V
Sbjct: 50 RCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 91
Score = 49.3 bits (118), Expect = 7e-08
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
VG +L VNG++L H+EAV L +I V
Sbjct: 56 VGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 91
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 99.4 bits (248), Expect = 1e-25
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+TL ++ LG+ I G ++ D G++I I GGA DGR++ G LL+
Sbjct: 8 TVTLNMEKYNFLGISIVGQSN-------ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQ 60
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQ---ISLTVCK 348
VN M+ S+ +AV LR H+ I LTV K
Sbjct: 61 VNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAK 94
Score = 84.0 bits (208), Expect = 4e-20
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 162 DVVLPKSGP--LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
V L LG SI+G ++ + GI+I I+ GG A G++ GD +L V
Sbjct: 8 TVTLNMEKYNFLGISIVGQSNE------RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQV 61
Query: 220 NGRDVSKVTHEEAVLAL---LEPCPEILLKIQHDPHPEG 255
N + +++++AV L + I+L + G
Sbjct: 62 NDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGGSG 100
Score = 48.6 bits (116), Expect = 1e-07
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ---ISLTVCK 66
G LL+VN M+ S+ +AV LR H+ I LTV K
Sbjct: 54 PGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAK 94
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 99.4 bits (248), Expect = 2e-25
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 251 PHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLK 310
+G L ++EG LG + GG D ++ + + ++ G A ++G ++
Sbjct: 11 KQLDGIHVTILHKEEGAGLGFSLAGGA--------DLENKVITVHRVFPNGLASQEGTIQ 62
Query: 311 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
G +L +NG SL G +H +A+ LR + +
Sbjct: 63 KGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVI 98
Score = 91.0 bits (226), Expect = 2e-22
Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
Query: 150 SPSVRSSSLFLQDVVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSG 208
+++ ++ + G LGFS+ GG D I + + P G+A+ G
Sbjct: 7 GATLKQLDGIHVTILHKEEGAGLGFSLAGGADL-------ENKVITVHRVFPNGLASQEG 59
Query: 209 KLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQE 258
++ G+ +L++NG+ + TH +A+ L + I
Sbjct: 60 TIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMP 109
Score = 48.6 bits (116), Expect = 2e-07
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G +L +NG SL G +H +A+ LR + +
Sbjct: 63 KGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVI 98
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 98.6 bits (246), Expect = 2e-25
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 253 PEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVG 312
G L R LG I GG + P D G+F+++I GGAA R G L+VG
Sbjct: 5 SSGRHVACLAR-SERGLGFSIAGG---KGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVG 60
Query: 313 MRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
R+L +NG+ + A H AV+ L + I+L + +
Sbjct: 61 DRVLSINGVDVTEARHDHAVSLLTAASPTIALLLER 96
Score = 98.6 bits (246), Expect = 2e-25
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 163 VVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
L + LGFSI GG + P+ GIF+S I GG A +G L++GDR+L++NG
Sbjct: 11 ACLARSERGLGFSIAGGKGST--PYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSING 68
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
DV++ H+ AV L P I L ++ +
Sbjct: 69 VDVTEARHDHAVSLLTAASPTIALLLEREAGS 100
Score = 50.4 bits (121), Expect = 3e-08
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
VG R+L +NG+ + A H AV+ L + I+L + +
Sbjct: 59 VGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLER 96
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 99.1 bits (247), Expect = 3e-25
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 238 EPCPEILLKIQHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKI 297
+P + I + ++ ++ R G LG+ + GG + G FITK+
Sbjct: 19 QPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESG------RLCAFITKV 72
Query: 298 NSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGH--QISLTVCK 348
G A G L+ G +LE NG L GA+ +E N + S Q+ L V +
Sbjct: 73 KKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSR 125
Score = 86.4 bits (214), Expect = 1e-20
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 160 LQDVVLPKSGP--LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRIL 217
L+D +P+ LG ++GG + FI+ + G +A G LR GD +L
Sbjct: 37 LKDGSVPRDSGAMLGLKVVGGKMT-----ESGRLCAFITKVKKGSLADTVGHLRPGDEVL 91
Query: 218 AVNGRDVSKVTHEEAVLALLE--PCPEILLKIQHDPHPEG 255
NGR + T EE +LE P P++ L + G
Sbjct: 92 EWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGPSSG 131
Score = 47.1 bits (112), Expect = 9e-07
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGH--QISLTVCK 66
G +LE NG L GA+ +E N + S Q+ L V +
Sbjct: 86 PGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSR 125
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 98.7 bits (246), Expect = 3e-25
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 246 KIQHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKR 305
+ + + +G +++ L++++ E LG+ I GG ++ + I++I+ G A R
Sbjct: 18 RHMENLYFQGIRKVLLLKEDHEGLGISITGGK---------EHGVPILISEIHPGQPADR 68
Query: 306 DGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
G L VG +L VNG++L H+EAV L +I V
Sbjct: 69 CGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 109
Score = 96.0 bits (239), Expect = 2e-24
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 160 LQDVVLPK--SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRIL 217
++ V+L K LG SI GG +H I IS I PG A G L +GD IL
Sbjct: 28 IRKVLLLKEDHEGLGISITGGKEHGV--------PILISEIHPGQPADRCGGLHVGDAIL 79
Query: 218 AVNGRDVSKVTHEEAVLALLEPCPEILLKIQH 249
AVNG ++ H+EAV L + EI ++ +
Sbjct: 80 AVNGVNLRDTKHKEAVTILSQQRGEIEFEVVY 111
Score = 49.8 bits (119), Expect = 7e-08
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
VG +L VNG++L H+EAV L +I V
Sbjct: 74 VGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 109
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 98.2 bits (245), Expect = 3e-25
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 250 DPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRL 309
D +TL +Q G +G+ I + G+++ + GGAA DGRL
Sbjct: 6 DHKEPEIITVTLKKQNG--MGLSIVAAKGAGQD------KLGIYVKSVVKGGAADVDGRL 57
Query: 310 KVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
G +LL V+G SL+G S + A + + ++L V K
Sbjct: 58 AAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAK 96
Score = 95.9 bits (239), Expect = 3e-24
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V L K +G SI+ GQ K GI++ +V GG A + G+L GD++L+V+GR
Sbjct: 15 VTLKKQNGMGLSIVAAKGA-----GQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 69
Query: 223 DVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
+ ++ E A + + L++
Sbjct: 70 SLVGLSQERAAELMTRTSSVVTLEVAKQGAIR 101
Score = 52.7 bits (127), Expect = 4e-09
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
G +LL V+G SL+G S + A + + ++L V K
Sbjct: 59 AGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAK 96
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 97.0 bits (242), Expect = 9e-25
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 150 SPSVRSSSLFLQDVVLPKS--GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALS 207
S + + + V L K LGF+I GG + GIFIS ++P A +
Sbjct: 6 SGNNELTQFLPRIVTLKKPPGAQLGFNIRGGKAS--------QLGIFISKVIPDSDAHRA 57
Query: 208 GKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
G L+ GD++LAVN D + H +AV +L+ EI ++++ P
Sbjct: 58 G-LQEGDQVLAVNDVDFQDIEHSKAV-EILKTAREISMRVRFFSGPS 102
Score = 80.1 bits (198), Expect = 9e-19
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 248 QHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDG 307
++ + +TL + G +LG +I+GG + G+FI+K+ A R G
Sbjct: 8 NNELTQFLPRIVTLKKPPGAQLGFNIRGG---------KASQLGIFISKVIPDSDAHRAG 58
Query: 308 RLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
L+ G ++L VN + H +AV L+ + IS+ V
Sbjct: 59 -LQEGDQVLAVNDVDFQDIEHSKAVEILKTARE-ISMRV 95
Score = 43.9 bits (104), Expect = 6e-06
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G ++L VN + H +AV L+ + IS+ V
Sbjct: 61 EGDQVLAVNDVDFQDIEHSKAVEILKTARE-ISMRV 95
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 96.2 bits (240), Expect = 1e-24
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 10/89 (11%)
Query: 163 VVLPK--SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
V + K +G LG SI GG ++ I IS I G A + L +GD IL+VN
Sbjct: 8 VTVRKADAGGLGISIKGGRENKM--------PILISKIFKGLAADQTEALFVGDAILSVN 59
Query: 221 GRDVSKVTHEEAVLALLEPCPEILLKIQH 249
G D+S TH+EAV AL + E++L++++
Sbjct: 60 GEDLSSATHDEAVQALKKTGKEVVLEVKY 88
Score = 93.9 bits (234), Expect = 7e-24
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+ +T+ + + LG+ IKGG +N + I+KI G AA + L VG +L
Sbjct: 6 RRVTVRKADAGGLGISIKGGR---------ENKMPILISKIFKGLAADQTEALFVGDAIL 56
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
VNG L A+H EAV L+ +G ++ L V
Sbjct: 57 SVNGEDLSSATHDEAVQALKKTGKEVVLEV 86
Score = 48.8 bits (117), Expect = 7e-08
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
VG +L VNG L A+H EAV L+ +G ++ L V
Sbjct: 51 VGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 86
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 96.2 bits (240), Expect = 1e-24
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 155 SSSLFLQDVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMG 213
SS + V L + GPLG +I G + I IS + GG+A +G + +G
Sbjct: 1 SSGAIIYTVELKRYGGPLGITISGTEEP--------FDPIIISSLTKGGLAERTGAIHIG 52
Query: 214 DRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
DRILA+N + EA+ L + LKI+ +
Sbjct: 53 DRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQ 93
Score = 92.4 bits (230), Expect = 3e-23
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 254 EGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGM 313
+ L R G LG+ I G ++ + + I+ + GG A+R G + +G
Sbjct: 4 AIIYTVELKR-YGGPLGITISGT---------EEPFDPIIISSLTKGGLAERTGAIHIGD 53
Query: 314 RLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFER 352
R+L +N SL G EA++ L+ +G ++L + K +
Sbjct: 54 RILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDA 92
Score = 51.9 bits (125), Expect = 9e-09
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFER 70
+G R+L +N SL G EA++ L+ +G ++L + K +
Sbjct: 51 IGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDA 92
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 96.7 bits (241), Expect = 1e-24
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 251 PHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLK 310
P G + I I + LG+ I GG + PL + I ++ GAA RDGRL
Sbjct: 12 PIVPGQEMIIEISKGRSGLGLSIVGG----KDTPL----NAIVIHEVYEEGAAARDGRLW 63
Query: 311 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTS 362
G ++LEVNG+ L +SH+EA+ LR + ++ L V + E +S
Sbjct: 64 AGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRDEESGPSS 115
Score = 94.4 bits (235), Expect = 9e-24
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 163 VVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
+ + K LG SI+GG D I I + G AA G+L GD+IL VNG
Sbjct: 21 IEISKGRSGLGLSIVGGKDTPLNA-------IVIHEVYEEGAAARDGRLWAGDQILEVNG 73
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQE 258
D+ +HEEA+ AL + ++ L + D +E
Sbjct: 74 VDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRDEE 110
Score = 52.8 bits (127), Expect = 6e-09
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTS 80
G ++LEVNG+ L +SH+EA+ LR + ++ L V + E +S
Sbjct: 64 AGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRDEESGPSS 115
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 96.8 bits (241), Expect = 1e-24
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 163 VVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
V + K S PLG SI+ G GI++S + G +A +G L GD++L NG
Sbjct: 23 VKVQKGSEPLGISIVSGEK----------GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNG 71
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQEITLIRQEGEKLG 270
++ T ++A L + + C I + Q++PH +++ + G G
Sbjct: 72 INLRSATEQQARLIIGQQCDTITILAQYNPHV---HQLSSHSRSGPSSG 117
Score = 81.4 bits (201), Expect = 6e-19
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 248 QHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDG 307
+ P+ E + + + + E LG+ I G G++++K+ G A + G
Sbjct: 12 KDRPYVEEPRHVKVQK-GSEPLGISIVSG-----------EKGGIYVSKVTVGSIAHQAG 59
Query: 308 RLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
L+ G +LLE NG++L A+ Q+A + I++
Sbjct: 60 -LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILA 97
Score = 49.0 bits (117), Expect = 1e-07
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G +LLE NG++L A+ Q+A + I++
Sbjct: 62 YGDQLLEFNGINLRSATEQQARLIIGQQCDTITILA 97
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 96.3 bits (240), Expect = 2e-24
Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+ L+++ G++LG+ + N+ G I + G + D +L+ G + +
Sbjct: 5 NVDLMKKAGKELGLSLSP------------NEIGCTIADLIQGQYPEIDSKLQRGDIITK 52
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
NG +L G Q + + ++S+ V +
Sbjct: 53 FNGDALEGLPFQVCYALFKGANGKVSMEVTR 83
Score = 88.6 bits (220), Expect = 1e-21
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 13/88 (14%)
Query: 162 DVVLPK--SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
+V L K LG S+ + G I+ ++ G + KL+ GD I
Sbjct: 5 NVDLMKKAGKELGLSLSPN-----------EIGCTIADLIQGQYPEIDSKLQRGDIITKF 53
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKI 247
NG + + + ++ +++
Sbjct: 54 NGDALEGLPFQVCYALFKGANGKVSMEV 81
Score = 50.1 bits (120), Expect = 5e-08
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
G + + NG +L G Q + + ++S+ V +
Sbjct: 46 RGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTR 83
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 96.7 bits (241), Expect = 2e-24
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 12/120 (10%)
Query: 248 QHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDG 307
F TL + G I GG D+ DE + + + G A +DG
Sbjct: 12 DASQLKGTFLSTTLKK-SNMGFGFTIIGG---------DEPDEFLQVKSVIPDGPAAQDG 61
Query: 308 RLKVGMRLLEVNGMSLLGASHQEAVNTLR--YSGHQISLTVCKGFERGDIERRASTSEGS 365
+++ G ++ +N + +LG +H + V + G ++L +C+G+ + S S
Sbjct: 62 KMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPANSGPS 121
Score = 91.3 bits (227), Expect = 2e-22
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 147 NFFSPSVRSSSLFLQDVVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAA 205
F+ L KS GF+IIGG + + + ++P G AA
Sbjct: 7 GLFTRDASQLKGTFLSTTLKKSNMGFGFTIIGGDEPD--------EFLQVKSVIPDGPAA 58
Query: 206 LSGKLRMGDRILAVNGRDVSKVTHEEAVLAL 236
GK+ GD I+ +N V TH + V
Sbjct: 59 QDGKMETGDVIVYINEVCVLGHTHADVVKLF 89
Score = 51.7 bits (124), Expect = 2e-08
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLR--YSGHQISLTVCKGFERGDIERRASTSEGS 83
G ++ +N + +LG +H + V + G ++L +C+G+ + S S
Sbjct: 65 TGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPANSGPS 121
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 96.8 bits (241), Expect = 2e-24
Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+ L +++ LG +K + V I+ + GGAA++ G ++ G +L
Sbjct: 11 SVRLFKRKVGGLGFLVKER----------VSKPPVIISDLIRGGAAEQSGLIQAGDIILA 60
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQSMSS 374
VN L+ S+ A+ LR + + + G +T G + +
Sbjct: 61 VNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVT 117
Score = 93.0 bits (231), Expect = 5e-23
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 162 DVVLPKSGP--LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
V L K LGF + P + IS ++ GG A SG ++ GD ILAV
Sbjct: 11 SVRLFKRKVGGLGFLVKERVSK---------PPVIISDLIRGGAAEQSGLIQAGDIILAV 61
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGF 256
N R + ++++ A+ L E + + PEGF
Sbjct: 62 NDRPLVDLSYDSALEVLRGIASETHVVLILRG-PEGF 97
Score = 51.4 bits (123), Expect = 3e-08
Identities = 12/64 (18%), Positives = 22/64 (34%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQ 88
G +L VN L+ S+ A+ LR + + + G +T G +
Sbjct: 54 AGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKT 113
Query: 89 SMSS 92
+
Sbjct: 114 IRVT 117
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 95.9 bits (239), Expect = 2e-24
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 150 SPSVRSSSLFLQDVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSG 208
S + S ++ V L K LGFSI+ D P + I I +V GVA SG
Sbjct: 6 SGELALWSPEVKIVELVKDCKGLGFSILDYQD----PLDPTRSVIVIRSLVADGVAERSG 61
Query: 209 KLRMGDRILAVNGRDVSKVTHEEAVLALLE-PCPEILLKIQHDP 251
L GDR+++VN + + EAV L P + L I P
Sbjct: 62 GLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105
Score = 90.9 bits (226), Expect = 1e-22
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+ + L++ + + LG I +PLD + I + + G A+R G L G RL+
Sbjct: 17 KIVELVK-DCKGLGFSILDY-----QDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLV 70
Query: 317 EVNGMSLLGASHQEAVNTLRYSGH-QISLTVCKG 349
VN L S EAV L+ + L +C G
Sbjct: 71 SVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSG 104
Score = 46.6 bits (111), Expect = 8e-07
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGH-QISLTVCKG 67
G RL+ VN L S EAV L+ + L +C G
Sbjct: 65 PGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSG 104
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 95.8 bits (239), Expect = 2e-24
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 150 SPSVRSSSLFLQDVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSG 208
S + V L + G ++ GG D + + + ++ G A G
Sbjct: 2 SSGSSGQASGHFSVELVRGYAGFGLTLGGGRDVA------GDTPLAVRGLLKDGPAQRCG 55
Query: 209 KLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
+L +GD +L +NG +TH +AV + P++ L I+
Sbjct: 56 RLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPL 98
Score = 93.1 bits (232), Expect = 2e-23
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 250 DPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRL 309
G + L+R G+ + GG R D + + + G A+R GRL
Sbjct: 6 SGQASGHFSVELVRGYA-GFGLTLGGG----RDVA---GDTPLAVRGLLKDGPAQRCGRL 57
Query: 310 KVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
+VG +L +NG S G +H +AV +R G Q+ L + +
Sbjct: 58 EVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRR 96
Score = 51.1 bits (123), Expect = 2e-08
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
VG +L +NG S G +H +AV +R G Q+ L + +
Sbjct: 59 VGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRR 96
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 95.9 bits (239), Expect = 3e-24
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 160 LQDVVLPKSG-PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILA 218
+++V L G LGF I+GG G+ + IVPGG+A G+L+ GD IL
Sbjct: 16 VEEVELINDGSGLGFGIVGGKT----------SGVVVRTIVPGGLADRDGRLQTGDHILK 65
Query: 219 VNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
+ G +V +T E+ L + + + DP +
Sbjct: 66 IGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGD 101
Score = 89.4 bits (222), Expect = 6e-22
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 13/115 (11%)
Query: 250 DPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRL 309
+E+ LI +G LG I GG GV + I GG A RDGRL
Sbjct: 10 TVCWGHVEEVELIN-DGSGLGFGIVGG-----------KTSGVVVRTIVPGGLADRDGRL 57
Query: 310 KVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEG 364
+ G +L++ G ++ G + ++ LR G+ + + V + GDI + S G
Sbjct: 58 QTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARD-PAGDISVTSGPSSG 111
Score = 48.5 bits (116), Expect = 2e-07
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEG 82
G +L++ G ++ G + ++ LR G+ + + V + GDI + S G
Sbjct: 59 TGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARD-PAGDISVTSGPSSG 111
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 97.3 bits (242), Expect = 4e-24
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 246 KIQHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKR 305
+++ + L + + E LG+ I G G + G+F+ + GGAA R
Sbjct: 71 ELEKRVERLELFPVELEK-DSEGLGISIIGM---GAGADMGLEKLGIFVKTVTEGGAAHR 126
Query: 306 DGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
DGR++V L+EV+G SL+G + A + LR + ++ + +
Sbjct: 127 DGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR 169
Score = 90.8 bits (225), Expect = 1e-21
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 147 NFFSPSVRSSSLFLQDVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAA 205
+ R L L V L K S LG SIIG + G K GIF+ + GG A
Sbjct: 68 AEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGA--DMGLEKLGIFVKTVTEGGAAH 125
Query: 206 LSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHD 250
G++++ D ++ V+G + VT A L + I +
Sbjct: 126 RDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170
Score = 52.6 bits (126), Expect = 2e-08
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
V L+EV+G SL+G + A + LR + ++ + +
Sbjct: 132 VNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR 169
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 95.6 bits (238), Expect = 4e-24
Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 10/113 (8%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+ L +++ LG +K + V I+ + GGAA++ G ++ G +L
Sbjct: 4 SVRLFKRKVGGLGFLVKER----------VSKPPVIISDLIRGGAAEQSGLIQAGDIILA 53
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQ 370
VN L+ S+ A+ LR + + + G +T G +
Sbjct: 54 VNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKT 106
Score = 94.1 bits (234), Expect = 1e-23
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 162 DVVLPKSGP--LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
V L K LGF + KP + IS ++ GG A SG ++ GD ILAV
Sbjct: 4 SVRLFKRKVGGLGFLVKERVS---------KPPVIISDLIRGGAAEQSGLIQAGDIILAV 54
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQEIT 260
N R + ++++ A+ L E + + +
Sbjct: 55 NDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLE 95
Score = 49.8 bits (119), Expect = 6e-08
Identities = 12/60 (20%), Positives = 21/60 (35%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQ 88
G +L VN L+ S+ A+ LR + + + G +T G +
Sbjct: 47 AGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKT 106
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 95.9 bits (239), Expect = 4e-24
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 248 QHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQ-----RGNPLDKNDEGVFITKINSGGA 302
H FQ ++ G++L + +K G G + +++ I GA
Sbjct: 11 HHGSENLYFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGA 70
Query: 303 AKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ--ISLTVCK 348
A +DGRLK G RL+EVNG+ L+G S +E V+ LR + + +SL V +
Sbjct: 71 AIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFR 118
Score = 89.8 bits (223), Expect = 6e-22
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 162 DVVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
++ L K LGFSI I++ +I+P G A G+L+ GDR++ VN
Sbjct: 33 NIQLKKGTEGLGFSITSRDVTI-----GGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVN 87
Query: 221 GRDVSKVTHEEAVLAL 236
G D+ + EE V L
Sbjct: 88 GVDLVGKSQEEVVSLL 103
Score = 48.9 bits (117), Expect = 1e-07
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ--ISLTVCK 66
G RL+EVNG+ L+G S +E V+ LR + + +SL V +
Sbjct: 79 AGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFR 118
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 94.6 bits (236), Expect = 4e-24
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 161 QDVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
QD+ L + GF I+GG + I+I HIVP G A G+LR GD +++V
Sbjct: 4 QDIFLWRKETGFGFRILGGNEPGE--------PIYIGHIVPLGAADTDGRLRSGDELISV 55
Query: 220 NGRDVSKVTHEEAVLALLEPCPE--ILLKIQHDP 251
+G V +H+ V + + + + L ++
Sbjct: 56 DGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQTR 89
Score = 87.3 bits (217), Expect = 2e-21
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
Q+I L R+ G I GG ++ E ++I I GAA DGRL+ G L+
Sbjct: 4 QDIFLWRK-ETGFGFRILGG---------NEPGEPIYIGHIVPLGAADTDGRLRSGDELI 53
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQ--ISLTVCK 348
V+G ++G SHQ V ++ + Q ++LTV +
Sbjct: 54 SVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQ 87
Score = 45.7 bits (109), Expect = 1e-06
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ--ISLTVCK 66
G L+ V+G ++G SHQ V ++ + Q ++LTV +
Sbjct: 48 SGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQ 87
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 95.1 bits (237), Expect = 4e-24
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 150 SPSVRSSSLFLQDVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSG 208
S V + K + GFSI GG ++ +++ + G A +G
Sbjct: 2 SSGSSGQDFDYFTVDMEKGAKGFGFSIRGGREYKM--------DLYVLRLAEDGPAIRNG 53
Query: 209 KLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
++R+GD+I+ +NG +TH A+ + + L ++
Sbjct: 54 RMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGT 96
Score = 88.5 bits (220), Expect = 9e-22
Identities = 21/104 (20%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 250 DPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRL 309
+ + + + G I+GG + +++ ++ G A R+GR+
Sbjct: 6 SGQDFDYFTVDMEKGAKG-FGFSIRGG---------REYKMDLYVLRLAEDGPAIRNGRM 55
Query: 310 KVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERG 353
+VG +++E+NG S +H A+ ++ G ++ L + +G G
Sbjct: 56 RVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGSG 99
Score = 49.6 bits (119), Expect = 6e-08
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERG 71
VG +++E+NG S +H A+ ++ G ++ L + +G G
Sbjct: 57 VGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGSG 99
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 95.6 bits (238), Expect = 5e-24
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 162 DVVLPKS--GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
V L K +G SI GG + P ++I + AAL G + GD I V
Sbjct: 22 KVTLQKDAQNLIGISIGGGAQY--------CPCLYIVQVFDNTPAALDGTVAAGDEITGV 73
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
NGR + T E + E E+ +
Sbjct: 74 NGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 105
Score = 94.8 bits (236), Expect = 1e-23
Identities = 19/121 (15%), Positives = 42/121 (34%), Gaps = 12/121 (9%)
Query: 251 PHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLK 310
P ++TL + +G+ I GG + ++I ++ A DG +
Sbjct: 15 GIPTVPGKVTLQKDAQNLIGISIGGG---------AQYCPCLYIVQVFDNTPAALDGTVA 65
Query: 311 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQ 370
G + VNG S+ G + E ++ ++++ K ++ +
Sbjct: 66 AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK---LQADPKQLEVLFNGPGIES 122
Query: 371 S 371
Sbjct: 123 V 123
Score = 49.8 bits (119), Expect = 9e-08
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQ 88
G + VNG S+ G + E ++ ++++ K ++ +
Sbjct: 66 AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK---LQADPKQLEVLFNGPGIES 122
Query: 89 S 89
Sbjct: 123 V 123
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 95.3 bits (237), Expect = 7e-24
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 11/126 (8%)
Query: 135 SSSLKPSILVTYNFFSPSVRSSSLFLQDVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIF 194
S T N + ++ V K +G + GG D GIF
Sbjct: 5 HHHHHHSSGGTENLYFQGHMILRPSMKLVKFRKGDSVGLRLAGGND----------VGIF 54
Query: 195 ISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
++ ++ AA G L GD+IL VN D + + EEAVL LL+ + I +
Sbjct: 55 VAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKD 113
Query: 255 GFQEIT 260
++ I
Sbjct: 114 VYRRIV 119
Score = 73.3 bits (180), Expect = 5e-16
Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 247 IQHDPHPEGFQEITLIR-QEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKR 305
+ H + L++ ++G+ +G+ + GG ND G+F+ + A +
Sbjct: 18 LYFQGHMILRPSMKLVKFRKGDSVGLRLAGG-----------NDVGIFVAGVLEDSPAAK 66
Query: 306 DGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
+G L+ G ++L VN + +EAV L +T+
Sbjct: 67 EG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTI 106
Score = 41.3 bits (97), Expect = 7e-05
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G ++L VN + +EAV L +T+
Sbjct: 71 EGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTI 106
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 94.4 bits (235), Expect = 1e-23
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 162 DVVLPKS--GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
V + K+ LG S+ + + K I I I P V SG L GD IL++
Sbjct: 18 MVEIVKTPGSALGISLTTTSLRN-------KSVITIDRIKPASVVDRSGALHPGDHILSI 70
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKIQHDPH 252
+G + + EA L ++ L+I P
Sbjct: 71 DGTSMEHCSLLEATKLLASISEKVRLEILPVPQ 103
Score = 91.7 bits (228), Expect = 9e-23
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 252 HPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKV 311
+ G + +++ G LG+ + +N + I +I R G L
Sbjct: 12 NASGPLMVEIVKTPGSALGISLTTTS--------LRNKSVITIDRIKPASVVDRSGALHP 63
Query: 312 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
G +L ++G S+ S EA L ++ L +
Sbjct: 64 GDHILSIDGTSMEHCSLLEATKLLASISEKVRLEI 98
Score = 47.1 bits (112), Expect = 6e-07
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G +L ++G S+ S EA L ++ L +
Sbjct: 63 PGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEI 98
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 93.6 bits (233), Expect = 2e-23
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 162 DVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
+ + + +G LG SI GG + P+ GIFIS + G AA +G +R+GD++L VN
Sbjct: 18 TLTILRQTGGLGISIAGGKGST--PYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVN 74
Query: 221 GRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
G + H EAV AL + +++ + P
Sbjct: 75 GVALQGAEHHEAVEALRGAGTAVQMRVWRESGPS 108
Score = 91.3 bits (227), Expect = 1e-22
Identities = 39/102 (38%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 248 QHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDG 307
+ E +T++RQ G LG+ I GG + P +DEG+FI++++ G A R G
Sbjct: 8 EPARIEEEELTLTILRQTG-GLGISIAGG---KGSTPYKGDDEGIFISRVSEEGPAARAG 63
Query: 308 RLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
++VG +LLEVNG++L GA H EAV LR +G + + V +
Sbjct: 64 -VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 104
Score = 51.6 bits (124), Expect = 1e-08
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
VG +LLEVNG++L GA H EAV LR +G + + V +
Sbjct: 66 VGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 104
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 93.3 bits (232), Expect = 2e-23
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
++TL + +G+ I GG + ++I ++ A DG + G +
Sbjct: 27 KVTLQKDAQNLIGISIGGG---------AQYCPCLYIVQVFDNTPAALDGTVAAGDEITG 77
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
VNG S+ G + E ++ ++++ K
Sbjct: 78 VNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 108
Score = 92.9 bits (231), Expect = 4e-23
Identities = 30/118 (25%), Positives = 42/118 (35%), Gaps = 15/118 (12%)
Query: 133 HISSSLKPSILVTYNFFSPSVRSSSLFLQDVVLPK--SGPLGFSIIGGTDHSCIPFGQHK 190
H L T N + S+ V L K +G SI GG +
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMVPGK-----VTLQKDAQNLIGISIGGGAQY--------C 49
Query: 191 PGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQ 248
P ++I + AAL G + GD I VNGR + T E + E E+ +
Sbjct: 50 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYN 107
Score = 50.9 bits (122), Expect = 3e-08
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
G + VNG S+ G + E ++ ++++ K
Sbjct: 71 AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 108
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 93.2 bits (232), Expect = 2e-23
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPL-DKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+TL R G G+ I GG R NP + + I+ + GG A +G+L+ R+
Sbjct: 10 TVTLHRAPGFGFGIAISGG----RDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVA 63
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRAS 360
VNG+S+ H AV LR SG +T+ + ++G RR +
Sbjct: 64 MVNGVSMDNVEHAFAVQQLRKSGKNAKITIRR--KKGGGWRRTT 105
Score = 88.6 bits (220), Expect = 1e-21
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 162 DVVLPK--SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
V L + G +I GG D+ F + I IS ++ GG A G+L+ DR+ V
Sbjct: 10 TVTLHRAPGFGFGIAISGGRDNP--HFQSGETSIVISDVLKGGPA--EGQLQENDRVAMV 65
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKIQH 249
NG + V H AV L + + I+
Sbjct: 66 NGVSMDNVEHAFAVQQLRKSGKNAKITIRR 95
Score = 48.5 bits (116), Expect = 2e-07
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRAS 78
R+ VNG+S+ H AV LR SG +T+ + ++G RR +
Sbjct: 58 ENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRR--KKGGGWRRTT 105
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 93.2 bits (232), Expect = 3e-23
Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 145 TYNFFSPSVRSSSLFLQDVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGV 203
+ + ++ S+ V L + + GFS+ GG +++ +++ + G
Sbjct: 10 GVDLGTENLYFQSMDFYTVELERGAKGFGFSLRGGREYN--------MDLYVLRLAEDGP 61
Query: 204 AALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
A SGK+R+GD IL +NG + H A+ + + L ++
Sbjct: 62 AERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGE 109
Score = 88.6 bits (220), Expect = 1e-21
Identities = 20/98 (20%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 252 HPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKV 311
F + L R G ++GG + + +++ ++ G A+R G++++
Sbjct: 21 QSMDFYTVELERGAKG-FGFSLRGGR---------EYNMDLYVLRLAEDGPAERSGKMRI 70
Query: 312 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
G +LE+NG + H A+ ++ G ++ L + +G
Sbjct: 71 GDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRG 108
Score = 48.9 bits (117), Expect = 1e-07
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
+G +LE+NG + H A+ ++ G ++ L + +G
Sbjct: 70 IGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRG 108
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 93.3 bits (232), Expect = 3e-23
Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 7/123 (5%)
Query: 241 PEILLKIQHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSG 300
+ IQ + I + R LG + R +F+ + G
Sbjct: 11 EDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVAL----RSQN--LGKVDIFVKDVQPG 64
Query: 301 GAAKRDGRLKVGMRLLEVNGMSLL-GASHQEAVNTLRYSGHQISLTVCKGFERGDIERRA 359
A RD RLK ++L +N L SHQ+A+ L+ + + L V +
Sbjct: 65 SVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSG 124
Query: 360 STS 362
+S
Sbjct: 125 PSS 127
Score = 92.9 bits (231), Expect = 5e-23
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 135 SSSLKPSILVTYNFFSPSVRSSSLFLQDVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIF 194
S S + + + D+ P +G LGFS++ K IF
Sbjct: 3 SGSSGLGNEDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQ-----NLGKVDIF 57
Query: 195 ISHIVPGGVAALSGKLRMGDRILAVNGRDVSK-VTHEEAVLALLEPCPEILLKIQHDPHP 253
+ + PG VA +L+ D+ILA+N + + ++H++A+ L + + L + +P
Sbjct: 58 VKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVH 117
Query: 254 E 254
Sbjct: 118 T 118
Score = 44.4 bits (105), Expect = 7e-06
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 29 VGMRLLEVNGMSLL-GASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTS 80
++L +N L SHQ+A+ L+ + + L V + +S
Sbjct: 75 ENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSGPSS 127
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 92.5 bits (230), Expect = 4e-23
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 253 PEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVG 312
+ +E+ L ++ GE LG+ + G I + GG A+R G L +G
Sbjct: 7 GDNCREVHLEKRRGEGLGVALVESGWGSLLP-------TAVIANLLHGGPAERSGALSIG 59
Query: 313 MRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
RL +NG SL+G +R + Q S+T+
Sbjct: 60 DRLTAINGTSLVGLPLAACQAAVRETKSQTSVTL 93
Score = 89.0 bits (221), Expect = 6e-22
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 152 SVRSSSLFLQDVVLPK--SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGK 209
S SS ++V L K LG +++ G P I++++ GG A SG
Sbjct: 2 SSGSSGDNCREVHLEKRRGEGLGVALVESGW------GSLLPTAVIANLLHGGPAERSGA 55
Query: 210 LRMGDRILAVNGRDVSKVTHEEAVLAL--LEPCPEILLKIQHDP 251
L +GDR+ A+NG + + A+ + + L I H P
Sbjct: 56 LSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCP 99
Score = 47.4 bits (113), Expect = 3e-07
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
+G RL +NG SL+G +R + Q S+T+
Sbjct: 58 IGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTL 93
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 93.0 bits (231), Expect = 4e-23
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
E+ L G+ ++G + I+ I + A+R G L++G R++
Sbjct: 18 EVVLTADPVTGFGIQLQGSVFATETL-----SSPPLISYIEADSPAERCGVLQIGDRVMA 72
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRS 367
+NG+ ++ +EA LR S +T+ F+ + S+ G S
Sbjct: 73 INGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAE-SVIPSSGSGPSS 121
Score = 87.2 bits (216), Expect = 5e-21
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 162 DVVLPK--SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
+VVL G + G + IS+I A G L++GDR++A+
Sbjct: 18 EVVLTADPVTGFGIQLQGSVFAT----ETLSSPPLISYIEADSPAERCGVLQIGDRVMAI 73
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKIQHD 250
NG T EEA L + + ++ +
Sbjct: 74 NGIPTEDSTFEEANQLLRDSSITSKVTLEIE 104
Score = 50.6 bits (121), Expect = 4e-08
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRS 85
+G R++ +NG+ ++ +EA LR S +T+ F+ + S+ G S
Sbjct: 66 IGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAE-SVIPSSGSGPSS 121
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 92.5 bits (230), Expect = 5e-23
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNP-LDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+TL + G+ + GG R NP + + + I+ + GG A DG L+ R++
Sbjct: 17 TVTLQKDSKRGFGIAVSGG----RDNPHFENGETSIVISDVLPGGPA--DGLLQENDRVV 70
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
VNG + H AV LR SG ++ V
Sbjct: 71 MVNGTPMEDVLHSFAVQQLRKSGKIAAIVV 100
Score = 87.5 bits (217), Expect = 3e-21
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 162 DVVLPKSGP--LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
V L K G ++ GG D+ F + I IS ++PGG A G L+ DR++ V
Sbjct: 17 TVTLQKDSKRGFGIAVSGGRDNP--HFENGETSIVISDVLPGGPA--DGLLQENDRVVMV 72
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
NG + V H AV L + + ++ +
Sbjct: 73 NGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQ 107
Score = 48.2 bits (115), Expect = 3e-07
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
R++ VNG + H AV LR SG ++ V
Sbjct: 65 ENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVV 100
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 95.0 bits (236), Expect = 5e-23
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 13/144 (9%)
Query: 115 HQRLDTGYGLPSNSTVAAHISSSLKPSILVTYNF-FSPSVRSSSLFLQDVVLPKSGP--L 171
L L N + +++P I + + + S L++V L + P L
Sbjct: 39 VAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQVEYDQLTPRRSRKLKEVRLDRLHPEGL 98
Query: 172 GFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEE 231
G S+ GG + C G+FISH++ GG A G L++GD I+ +NG +S THEE
Sbjct: 99 GLSVRGGLEFGC--------GLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEE 149
Query: 232 AVLALLEPCPEILLKIQHDPHPEG 255
+ L+ + +K++H
Sbjct: 150 VI-NLIRTEKTVSIKVRHIGLIPV 172
Score = 81.9 bits (202), Expect = 2e-18
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 251 PHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLK 310
+E+ L R E LG+ ++GGL + G+FI+ + GG A G L+
Sbjct: 80 RRSRKLKEVRLDRLHPEGLGLSVRGGL---------EFGCGLFISHLIKGGQADSVG-LQ 129
Query: 311 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
VG ++ +NG S+ +H+E +N +R + +S+ V
Sbjct: 130 VGDEIVRINGYSISSCTHEEVINLIR-TEKTVSIKV 164
Score = 44.2 bits (104), Expect = 2e-05
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
VG ++ +NG S+ +H+E +N +R + +S+ V
Sbjct: 130 VGDEIVRINGYSISSCTHEEVINLIR-TEKTVSIKV 164
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 91.6 bits (228), Expect = 8e-23
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 162 DVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
DV L + GF I+GG + I I ++ G A G+L GD ++ V+
Sbjct: 12 DVHLRRMESGFGFRILGGDEPGQ--------PILIGAVIAMGSADRDGRLHPGDELVYVD 63
Query: 221 GRDVSKVTHEEAVLALLE--PCPEILLKIQHDP 251
G V+ TH + + ++ L ++
Sbjct: 64 GIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKV 96
Score = 87.8 bits (218), Expect = 2e-21
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 12/93 (12%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
++ L R E G I GG D+ + + I + + G+A RDGRL G L+
Sbjct: 12 DVHLRRMES-GFGFRILGG---------DEPGQPILIGAVIAMGSADRDGRLHPGDELVY 61
Query: 318 VNGMSLLGASHQEAVNTLRYSGH--QISLTVCK 348
V+G+ + G +H+ ++ + ++ Q++LTV +
Sbjct: 62 VDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRR 94
Score = 47.7 bits (114), Expect = 2e-07
Identities = 10/40 (25%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGH--QISLTVCK 66
G L+ V+G+ + G +H+ ++ + ++ Q++LTV +
Sbjct: 55 PGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRR 94
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 91.3 bits (227), Expect = 1e-22
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Query: 249 HDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGR 308
P + + LG+ I GG+ G V+I ++ GG +DGR
Sbjct: 7 GSPLDRDPAFRVITVTKETGLGLKILGGINRNEGP-------LVYIHEVIPGGDCYKDGR 59
Query: 309 LKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGD 354
LK G +L+ +N S++G S +EA + + + + F R
Sbjct: 60 LKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSG 105
Score = 87.5 bits (217), Expect = 3e-21
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 150 SPSVRSSSLFLQDVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGK 209
S S + + + K LG I+GG + P ++I ++PGG G+
Sbjct: 6 SGSPLDRDPAFRVITVTKETGLGLKILGGINR------NEGPLVYIHEVIPGGDCYKDGR 59
Query: 210 LRMGDRILAVNGRDVSKVTHEEAVLAL 236
L+ GD+++++N + V+ EEA +
Sbjct: 60 LKPGDQLVSINKESMIGVSFEEAKSII 86
Score = 46.7 bits (111), Expect = 7e-07
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGD 72
G +L+ +N S++G S +EA + + + + F R
Sbjct: 62 PGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSG 105
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 91.2 bits (227), Expect = 1e-22
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
I L + E LG I + +++ I GAA +DGRLK G RL+E
Sbjct: 14 NIQLKK-GTEGLGFSITSR------DVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIE 66
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQ--ISLTVCKGFE 351
VNG+ L G S +E V+ LR + + +SL V + E
Sbjct: 67 VNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEE 102
Score = 91.2 bits (227), Expect = 1e-22
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 162 DVVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
++ L K LGFSI I++ +I+P G A G+L+ GDR++ VN
Sbjct: 14 NIQLKKGTEGLGFSITSRDVTI-----GGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVN 68
Query: 221 GRDVSKVTHEEAVLAL 236
G D++ + EE V L
Sbjct: 69 GVDLAGKSQEEVVSLL 84
Score = 48.9 bits (117), Expect = 1e-07
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQ--ISLTVCKGFE 69
G RL+EVNG+ L G S +E V+ LR + + +SL V + E
Sbjct: 60 AGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEE 102
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 90.8 bits (226), Expect = 1e-22
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 162 DVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
+ + + +G LG SI GG + P+ GIFIS + G AA +G +R+GD++L VN
Sbjct: 6 TLTILRQTGGLGISIAGGKGST--PYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVN 62
Query: 221 GRDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
G + H EAV AL + +++ +
Sbjct: 63 GVALQGAEHHEAVEALRGAGTAVQMRVWRER 93
Score = 88.9 bits (221), Expect = 6e-22
Identities = 38/89 (42%), Positives = 57/89 (64%), Gaps = 5/89 (5%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+T++RQ G LG+ I GG + P +DEG+FI++++ G A R G ++VG +LLE
Sbjct: 6 TLTILRQTG-GLGISIAGG---KGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLE 60
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTV 346
VNG++L GA H EAV LR +G + + V
Sbjct: 61 VNGVALQGAEHHEAVEALRGAGTAVQMRV 89
Score = 50.4 bits (121), Expect = 3e-08
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
VG +LLEVNG++L GA H EAV LR +G + + V
Sbjct: 54 VGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 89
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 90.0 bits (224), Expect = 2e-22
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 162 DVVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
L KS GF+++GG + + I +V G AAL GK+ GD I++VN
Sbjct: 3 HTKLRKSSRGFGFTVVGGDEPD--------EFLQIKSLVLDGPAALDGKMETGDVIVSVN 54
Query: 221 GRDVSKVTHEEAVLAL 236
V TH + V
Sbjct: 55 DTCVLGHTHAQVVKIF 70
Score = 85.8 bits (213), Expect = 6e-21
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
L + G + GG D+ DE + I + G A DG+++ G ++
Sbjct: 3 HTKLRKSSR-GFGFTVVGG---------DEPDEFLQIKSLVLDGPAALDGKMETGDVIVS 52
Query: 318 VNGMSLLGASHQEAVNTLR--YSGHQISLTVCK 348
VN +LG +H + V + G + L +C+
Sbjct: 53 VNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85
Score = 46.9 bits (112), Expect = 3e-07
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLR--YSGHQISLTVCK 66
G ++ VN +LG +H + V + G + L +C+
Sbjct: 46 TGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 90.4 bits (225), Expect = 2e-22
Identities = 18/91 (19%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+ L+++ G++LG+ + N+ G I + G + D +L+ G + +
Sbjct: 11 NVDLMKKAGKELGLSLSP------------NEIGCTIADLIQGQYPEIDSKLQRGDIITK 58
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
NG +L G Q + + + ++S+ V +
Sbjct: 59 FNGDALEGLPFQVSYALFKGANGKVSMEVTR 89
Score = 88.1 bits (219), Expect = 1e-21
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 13/92 (14%)
Query: 162 DVVLPK--SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
+V L K LG S+ + G I+ ++ G + KL+ GD I
Sbjct: 11 NVDLMKKAGKELGLSLSPN-----------EIGCTIADLIQGQYPEIDSKLQRGDIITKF 59
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
NG + + + + ++ +++
Sbjct: 60 NGDALEGLPFQVSYALFKGANGKVSMEVTRPK 91
Score = 46.9 bits (112), Expect = 4e-07
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
G + + NG +L G Q + + + ++S+ V +
Sbjct: 52 RGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTR 89
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 91.4 bits (227), Expect = 2e-22
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 148 FFSPSVRSSSLFLQDVVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAAL 206
FF+ + L KS GF+++GG + + I +V G AAL
Sbjct: 7 FFTRNPSELKGKFIHTKLRKSSRGFGFTVVGGDEPD--------EFLQIKSLVLDGPAAL 58
Query: 207 SGKLRMGDRILAVNGRDVSKVTHEEAVLAL 236
GK+ GD I++VN V TH + V
Sbjct: 59 DGKMETGDVIVSVNDTCVLGHTHAQVVKIF 88
Score = 90.2 bits (224), Expect = 5e-22
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
F L + G + GG D+ DE + I + G A DG+++ G +
Sbjct: 19 FIHTKLRKSS-RGFGFTVVGG---------DEPDEFLQIKSLVLDGPAALDGKMETGDVI 68
Query: 316 LEVNGMSLLGASHQEAVNTLR--YSGHQISLTVCKGFERGDIERRASTSEGSRSVTQSMS 373
+ VN +LG +H + V + G + L +C+G+ + + S+ S++
Sbjct: 69 VSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGY-----PLPFDPDDPNTSLVTSVA 123
Query: 374 SLDRE 378
LD+E
Sbjct: 124 ILDKE 128
Score = 51.3 bits (123), Expect = 2e-08
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLR--YSGHQISLTVCKGFERGDIERRASTSEGSRSV 86
G ++ VN +LG +H + V + G + L +C+G+ + + S+
Sbjct: 64 TGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGY-----PLPFDPDDPNTSL 118
Query: 87 TQSMSSLDRE 96
S++ LD+E
Sbjct: 119 VTSVAILDKE 128
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 91.0 bits (226), Expect = 2e-22
Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 12/109 (11%)
Query: 241 PEILLKIQHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSG 300
E + + E + + + + LG ++ + V I++I G
Sbjct: 11 DERVYESIGHYGGETVKIVRIEKARDIPLGATVRNE------------MDSVIISRIVKG 58
Query: 301 GAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
GAA++ G L G +LE+NG+ + G E + L ++ +
Sbjct: 59 GAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPS 107
Score = 80.6 bits (199), Expect = 1e-18
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 163 VVLPKS--GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
V + K+ PLG ++ D + IS IV GG A SG L GD +L +N
Sbjct: 29 VRIEKARDIPLGATVRNEMD-----------SVIISRIVKGGAAEKSGLLHEGDEVLEIN 77
Query: 221 GRDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
G ++ E L + + + P
Sbjct: 78 GIEIRGKDVNEVFDLLSDMHGTLTFVLIPSSGP 110
Score = 46.7 bits (111), Expect = 7e-07
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
G +LE+NG+ + G E + L ++ +
Sbjct: 69 EGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPS 107
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 91.3 bits (226), Expect = 3e-22
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 167 KSGPLGFSIIGGTDHSCIPFGQH----KPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
++ LGFSI GG D GI+++ + GG A ++G L++GD+I+ VNG
Sbjct: 36 ENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGW 94
Query: 223 DVSKVTHEEAVLALLEPCPE-ILLKIQHDPHPEGFQEITLIRQE 265
D++ VTH++A L + E + L + + Q+ L E
Sbjct: 95 DMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSMLSETE 138
Score = 78.2 bits (192), Expect = 1e-17
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 247 IQHDPHPEGFQEITLIRQEGEKLGMHIKGGLR---GQRGNPLDKNDEGVFITKINSGGAA 303
+ + + L + E LG I GG+ Q DK D+G+++T+++ GG A
Sbjct: 18 LYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPA 77
Query: 304 KRDGRLKVGMRLLEVNGMSLLGASHQEAVNTL-RYSGHQISLTVCK-GFERGDIERRAST 361
+ G L++G ++++VNG + +H +A L + S + L V + ++ + S
Sbjct: 78 EIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSMLSE 136
Query: 362 SE 363
+E
Sbjct: 137 TE 138
Score = 41.9 bits (98), Expect = 5e-05
Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTL-RYSGHQISLTVCK-GFERGDIERRASTSE 81
+G ++++VNG + +H +A L + S + L V + ++ + S +E
Sbjct: 84 IGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSMLSETE 138
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 89.3 bits (222), Expect = 5e-22
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 11/99 (11%)
Query: 248 QHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDG 307
H + I + E +G+ +K + + +I GG R G
Sbjct: 5 HHHHSGHMVRLIQFEKVTEEPMGICLKLN-----------EKQSCTVARILHGGMIHRQG 53
Query: 308 RLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
L VG +LE+NG ++ S + ++ + ISL V
Sbjct: 54 SLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKV 92
Score = 71.6 bits (176), Expect = 8e-16
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 163 VVLPKS--GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
+ K P+G + K ++ I+ GG+ G L +GD IL +N
Sbjct: 16 IQFEKVTEEPMGICLKLN----------EKQSCTVARILHGGMIHRQGSLHVGDEILEIN 65
Query: 221 GRDVSKVTHEEAVLALLEPCPEILLKI 247
G +V+ + ++ A+ E I LK+
Sbjct: 66 GTNVTNHSVDQLQKAMKETKGMISLKV 92
Score = 45.0 bits (107), Expect = 2e-06
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
VG +LE+NG ++ S + ++ + ISL V
Sbjct: 57 VGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKV 92
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 88.9 bits (221), Expect = 7e-22
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 163 VVLPKS--GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
V + KS G LGFS+ GG++H GIF+S + G A +G L +GD+I VN
Sbjct: 14 VRVEKSPAGRLGFSVRGGSEH--------GLGIFVSKVEEGSSAERAG-LCVGDKITEVN 64
Query: 221 GRDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
G + T AV +L + + ++
Sbjct: 65 GLSLESTTMGSAV-KVLTSSSRLHMMVRRMGSG 96
Score = 83.2 bits (206), Expect = 7e-20
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 251 PHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLK 310
+ + + + +LG ++GG ++ G+F++K+ G +A+R G L
Sbjct: 6 SGSDIIHSVRVEKSPAGRLGFSVRGGS---------EHGLGIFVSKVEEGSSAERAG-LC 55
Query: 311 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
VG ++ EVNG+SL + AV L S ++ + V
Sbjct: 56 VGDKITEVNGLSLESTTMGSAVKVLT-SSSRLHMMV 90
Score = 44.3 bits (105), Expect = 4e-06
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
VG ++ EVNG+SL + AV L S ++ + V
Sbjct: 56 VGDKITEVNGLSLESTTMGSAVKVLT-SSSRLHMMV 90
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 95.3 bits (236), Expect = 1e-21
Identities = 44/281 (15%), Positives = 85/281 (30%), Gaps = 33/281 (11%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V K +G + GG D GIF++ ++ AA G L GD+IL VN
Sbjct: 13 VKFRKGDSVGLRLAGGNDV----------GIFVAGVLEDSPAAKEG-LEEGDQILRVNNV 61
Query: 223 DVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQEITLIRQE-------------GEKL 269
D + + EEAVL LL+ + I + ++ I
Sbjct: 62 DFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPY 121
Query: 270 GMHIKGGLRGQRGNPLDKNDEGV-FITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH 328
G+ G + + L G +I G + R ++ +
Sbjct: 122 GLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQ-YTLPK 180
Query: 329 QEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQSMSSLDREDLDTDVFKQ- 387
+ + + + + + + A + + + + L
Sbjct: 181 TAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGP 240
Query: 388 -EEEMKKELVEWEKEEQEERKENLELDEVREKSTPEMPHYF 427
+ +++L E + + K E R+ T +
Sbjct: 241 IADVAREKLAREEPDIYQIAKS-----EPRDAGTDQRSSGI 276
Score = 38.7 bits (89), Expect = 0.003
Identities = 14/79 (17%), Positives = 29/79 (36%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQ 88
G ++L VN + +EAV L +T+ ++ R + G +
Sbjct: 51 EGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIR 110
Query: 89 SMSSLDREDLDTDVFKQGQ 107
+ ++E F +G+
Sbjct: 111 THFEYEKESPYGLSFNKGE 129
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 87.9 bits (218), Expect = 2e-21
Identities = 39/109 (35%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 150 SPSVRSSSLFLQDVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGK 209
SP R + + L S LG SI G KPGIFISH+ PG ++A G
Sbjct: 8 SPGNRENKEKKVFISLVGSRGLGCSISSGPIQ--------KPGIFISHVKPGSLSAEVG- 58
Query: 210 LRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQE 258
L +GD+I+ VNG D S + H+EAV +L+ + + I E F
Sbjct: 59 LEIGDQIVEVNGVDFSNLDHKEAV-NVLKSSRSLTISIVAAAGRELFMT 106
Score = 81.4 bits (201), Expect = 4e-19
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 10/114 (8%)
Query: 251 PHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLK 310
+++ + LG I G G+FI+ + G + G L+
Sbjct: 11 NRENKEKKVFISLVGSRGLGCSISSG---------PIQKPGIFISHVKPGSLSAEVG-LE 60
Query: 311 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEG 364
+G +++EVNG+ H+EAVN L+ S V + R+ S G
Sbjct: 61 IGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRELFMTDRSGPSSG 114
Score = 47.5 bits (113), Expect = 4e-07
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEG 82
+G +++EVNG+ H+EAVN L+ S V + R+ S G
Sbjct: 61 IGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRELFMTDRSGPSSG 114
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 87.5 bits (217), Expect = 2e-21
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
+ +++ LG+ I+GG ++ P I I GG+A G+LKVG +LEV
Sbjct: 9 LVRVKKSAATLGIAIEGGANTRQPLP--------RIVTIQRGGSAHNCGQLKVGHVILEV 60
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTV 346
NG++L G H+EA + +
Sbjct: 61 NGLTLRGKEHREAARIIAEAFKTKDRDY 88
Score = 84.4 bits (209), Expect = 3e-20
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 163 VVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
V + K + LG +I GG + P I I GG A G+L++G IL VNG
Sbjct: 10 VRVKKSAATLGIAIEGGANTRQ-------PLPRIVTIQRGGSAHNCGQLKVGHVILEVNG 62
Query: 222 RDVSKVTHEEAVLAL 236
+ H EA +
Sbjct: 63 LTLRGKEHREAARII 77
Score = 46.6 bits (111), Expect = 7e-07
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
VG +LEVNG++L G H+EA + +
Sbjct: 53 VGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDY 88
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 88.0 bits (218), Expect = 3e-21
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 150 SPSVRSSSLFLQDVVLPKSGP---LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAAL 206
+ L L++V L + LG ++ TD + GI+IS I P +AA
Sbjct: 10 HQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDD------EDDIGIYISEIDPNSIAAK 63
Query: 207 SGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
G++R GDRI+ +NG +V A+L E LL + + +
Sbjct: 64 DGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQLD 111
Score = 79.1 bits (195), Expect = 3e-18
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 250 DPHPEGFQEITLIRQEG-EKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGR 308
D +E+ L R +KLG+ + D++D G++I++I+ A +DGR
Sbjct: 14 DREELELEEVDLYRMNSQDKLGLTVCYR-------TDDEDDIGIYISEIDPNSIAAKDGR 66
Query: 309 LKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
++ G R++++NG+ + A+ T + + SL + +
Sbjct: 67 IREGDRIIQINGIEVQNREEAVALLTSEENKN-FSLLIAR 105
Score = 34.4 bits (79), Expect = 0.019
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
G R++++NG+ + A+ T + + SL + +
Sbjct: 69 EGDRIIQINGIEVQNREEAVALLTSEENKN-FSLLIAR 105
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 86.5 bits (215), Expect = 4e-21
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V L P GF ++GG D S + IS + G AAL+ L GD I A+NG
Sbjct: 12 VTLRGPSPWGFRLVGGRDFSA--------PLTISRVHAGSKAALAA-LCPGDLIQAINGE 62
Query: 223 DVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
+TH EA + + L + P
Sbjct: 63 STELMTHLEAQNRIKGCHDHLTLSVSSGPSS 93
Score = 67.3 bits (165), Expect = 2e-14
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+TL G + GG + I+++++G A L G +
Sbjct: 11 SVTLRGPSP--WGFRLVGGRD---------FSAPLTISRVHAGSKAALAA-LCPGDLIQA 58
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERG 353
+NG S +H EA N ++ ++L+V G G
Sbjct: 59 INGESTELMTHLEAQNRIKGCHDHLTLSVSSGPSSG 94
Score = 44.2 bits (105), Expect = 3e-06
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERG 71
G + +NG S +H EA N ++ ++L+V G G
Sbjct: 52 PGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSSGPSSG 94
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 87.0 bits (216), Expect = 4e-21
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 163 VVLPK-SGPLGFSIIGGTDHSCIPFGQH----KPGIFISHIVPGGVAALSGKLRMGDRIL 217
V + K GF++ G + P +S ++PGG A +G +R GDRIL
Sbjct: 10 VRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRIL 68
Query: 218 AVNGRDVSKVTHEEAVLALLEPCPEILLKIQ 248
VNG +V TH++ V + E++L +
Sbjct: 69 EVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
Score = 76.6 bits (189), Expect = 2e-17
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 259 ITLIRQEGEKLGMHIKGG---LRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
+ +++ E G +++G R + ++ + GGAA R G ++ G R+
Sbjct: 10 VRIVKSESG-YGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRI 67
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 347
LEVNG+++ GA+H++ V+ +R ++ LTV
Sbjct: 68 LEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
Score = 48.1 bits (115), Expect = 2e-07
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 65
G R+LEVNG+++ GA+H++ V+ +R ++ LTV
Sbjct: 63 KGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 87.2 bits (216), Expect = 6e-21
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 163 VVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
V L K S LGFS+ GG + I+ I G + S ++ GD IL + G
Sbjct: 33 VTLEKMSAGLGFSLEGGKGSL-----HGDKPLTINRIFKGAASEQSETVQPGDEILQLGG 87
Query: 222 RDVSKVTHEEAVLAL 236
+ +T EA +
Sbjct: 88 TAMQGLTRFEAWNII 102
Score = 87.2 bits (216), Expect = 7e-21
Identities = 22/123 (17%), Positives = 53/123 (43%), Gaps = 17/123 (13%)
Query: 250 DPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRL 309
+TL + LG ++GG +G+ D+ + I +I G A+++ +
Sbjct: 24 STAEATVCTVTLEKMSA-GLGFSLEGG----KGSL--HGDKPLTINRIFKGAASEQSETV 76
Query: 310 KVGMRLLEVNGMSLLGASHQEAVNTLRYSGH-QISLTVCKGFERGDIERRASTSEGSRSV 368
+ G +L++ G ++ G + EA N ++ +++ + R++ S+ + +
Sbjct: 77 QPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIR---------RKSLQSKETTAA 127
Query: 369 TQS 371
S
Sbjct: 128 GDS 130
Score = 45.6 bits (108), Expect = 3e-06
Identities = 10/62 (16%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGH-QISLTVCKGFERGDIERRASTSEGSRSVT 87
G +L++ G ++ G + EA N ++ +++ + R++ S+ + +
Sbjct: 78 PGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIR---------RKSLQSKETTAAG 128
Query: 88 QS 89
S
Sbjct: 129 DS 130
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 86.2 bits (214), Expect = 7e-21
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 166 PKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVS 225
LGFSI GG++H GI++S + PG +A G LR+GD+IL VN + ++
Sbjct: 18 KAHEGLGFSIRGGSEH--------GVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLA 68
Query: 226 KVTHEEAVLALLEPCPEILLKIQH 249
+VTH EAV L+ +++L +
Sbjct: 69 RVTHAEAV-KALKGSKKLVLSVYS 91
Score = 75.1 bits (185), Expect = 5e-17
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 257 QEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
+ ++L R + + LG I+GG ++ G++++ + G A+++G L+VG ++
Sbjct: 10 RLVSLRRAKAHEGLGFSIRGGS---------EHGVGIYVSLVEPGSLAEKEG-LRVGDQI 59
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
L VN SL +H EAV L+ S + G
Sbjct: 60 LRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAG 93
Score = 43.9 bits (104), Expect = 6e-06
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
VG ++L VN SL +H EAV L+ S + G
Sbjct: 55 VGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAG 93
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 85.8 bits (213), Expect = 7e-21
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V + P GF I GG D I ++ + G A + LR GD I+A+NG+
Sbjct: 10 VDVAGPAPWGFRISGGRDFHT--------PIIVTKVTERGKAEAAD-LRPGDIIVAINGQ 60
Query: 223 DVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
+ H EA + + + L++ P
Sbjct: 61 SAENMLHAEAQSKIRQSASPLRLQLDRSSGP 91
Score = 70.4 bits (173), Expect = 2e-15
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 254 EGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGM 313
G +T+ G I GG + +TK+ G A+ L+ G
Sbjct: 3 SGSSGLTVDVAGPAPWGFRISGGRD---------FHTPIIVTKVTERGKAEAAD-LRPGD 52
Query: 314 RLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
++ +NG S H EA + +R S + L +
Sbjct: 53 IIVAINGQSAENMLHAEAQSKIRQSASPLRLQL 85
Score = 43.8 bits (104), Expect = 5e-06
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G ++ +NG S H EA + +R S + L +
Sbjct: 50 PGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQL 85
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 88.8 bits (219), Expect = 9e-21
Identities = 42/195 (21%), Positives = 65/195 (33%), Gaps = 27/195 (13%)
Query: 168 SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKV 227
S LGFSI GG PF GIF++ + P G A+ L+ GD+I+ NG +
Sbjct: 1 SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINI 58
Query: 228 THEEAVLALLEPCPEILLKIQH--DPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNP- 284
H +AV L + L I + + + + G + L P
Sbjct: 59 EHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPT 118
Query: 285 -----LDKNDEGV----------------FITKINSGGAAKRDGRLKVGM-RLLEVNGMS 322
D + GV + + LK G+ + V S
Sbjct: 119 SLLISWDASYYGVSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTITVYAYS 178
Query: 323 LLGASHQEAVNTLRY 337
SH + ++ Y
Sbjct: 179 DYYGSHHYSPISINY 193
Score = 74.6 bits (182), Expect = 1e-15
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 267 EKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGA 326
+LG I GG G RGNP +D+G+F+T++ G A L+ G ++++ NG S +
Sbjct: 2 PELGFSISGG-VGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINI 58
Query: 327 SHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQSMSSLDREDLDTD 383
H +AV+ L+ + + L + + E G+ ++ + S +L+
Sbjct: 59 EHGQAVSLLKTFQNTVELIIVR--EVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVV 113
Score = 42.2 bits (98), Expect = 1e-04
Identities = 24/210 (11%), Positives = 58/210 (27%), Gaps = 61/210 (29%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQ 88
G ++++ NG S + H +AV+ L+ + + L + +
Sbjct: 43 PGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE--------------------- 81
Query: 89 SMSSLDREDLDTDVFKQGQWSTVVTAHQRLDTGYGLPSNSTVAAHISSSLKPSILVTYNF 148
+ D G G S+ + ++ S+L++++
Sbjct: 82 ---------------VGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSLLISWD- 125
Query: 149 FSPSVRSSSLFLQDVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSG 208
+ + I G + P + + A
Sbjct: 126 -----------------ASYYGVSYYRITYG-----ETGGNSP-VQEFTVPYSSSTATIS 162
Query: 209 KLRMG-DRILAVNGRDVSKVTHEEAVLALL 237
L+ G D + V +H + +++
Sbjct: 163 GLKPGVDYTITVYAYSDYYGSHHYSPISIN 192
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 86.5 bits (214), Expect = 1e-20
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 263 RQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMS 322
+ + + G G G + +N + I+ + + GAA DG L+ G L+ V +
Sbjct: 23 SSLNKVIQTKLTVGNLGL-GLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHAN 81
Query: 323 LLGASHQEAVNTLRY--SGHQISLTVCKGFE 351
+LG + +E + L+ G + + +GF
Sbjct: 82 VLGYTLREFLKLLQNITIGTVLQIKAYRGFL 112
Score = 82.2 bits (203), Expect = 3e-19
Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 16/129 (12%)
Query: 135 SSSLKPSILVTYNFFSPSVRSSSLFLQDVVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGI 193
S S + + SS + L LG +I P +
Sbjct: 3 SGSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQN-----------GPYL 51
Query: 194 FISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLAL--LEPCPEILLKIQHD- 250
ISH++ G AA G L+ GD +++V +V T E + L + + +K
Sbjct: 52 QISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGF 111
Query: 251 -PHPEGFQE 258
P+ +Q+
Sbjct: 112 LEIPQEWQD 120
Score = 49.1 bits (117), Expect = 1e-07
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRY--SGHQISLTVCKGFE 69
G L+ V ++LG + +E + L+ G + + +GF
Sbjct: 70 PGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFL 112
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 86.1 bits (213), Expect = 1e-20
Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 13/97 (13%)
Query: 167 KSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALS-GKLRMGDRILAVNGRDVS 225
++G GF++ GG D + +S + PG A L +L GD+++ +NGRD++
Sbjct: 25 ENGRFGFNVKGGYDQKM--------PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 76
Query: 226 KVTHEEAVLAL----LEPCPEILLKIQHDPHPEGFQE 258
+ TH++ VL + E++L ++ + + +E
Sbjct: 77 EHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEE 113
Score = 74.9 bits (184), Expect = 1e-16
Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 254 EGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKR-DGRLKVG 312
+ I + E + G ++KGG V ++++ G A RL G
Sbjct: 14 DNLVLIRMKPDENGRFGFNVKGGY---------DQKMPVIVSRVAPGTPADLCVPRLNEG 64
Query: 313 MRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
+++ +NG + +H + V ++ S + S +
Sbjct: 65 DQVVLINGRDIAEHTHDQVVLFIKASCERHSGEL 98
Score = 42.6 bits (100), Expect = 2e-05
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G +++ +NG + +H + V ++ S + S +
Sbjct: 63 EGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGEL 98
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 84.3 bits (209), Expect = 2e-20
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 163 VVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
V+L KS + + G+ IF+ + G+A G L GD IL +NG
Sbjct: 4 VLLMKSRANEEYGLRLGS------------QIFVKEMTRTGLATKDGNLHEGDIILKING 51
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHD 250
++ +A + + ++ L + D
Sbjct: 52 TVTENMSLTDARKLIEKSRGKLQLVVLRD 80
Score = 74.7 bits (184), Expect = 5e-17
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 14/91 (15%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+ L++ ++ G +F+ ++ G A +DG L G +L+
Sbjct: 3 GVLLMK-SRANEEYGLRLG-------------SQIFVKEMTRTGLATKDGNLHEGDIILK 48
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
+NG S +A + S ++ L V +
Sbjct: 49 INGTVTENMSLTDARKLIEKSRGKLQLVVLR 79
Score = 44.2 bits (105), Expect = 3e-06
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
G +L++NG S +A + S ++ L V +
Sbjct: 42 EGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLR 79
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 85.6 bits (212), Expect = 2e-20
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
+VL LG +I GG ++ GI+I+ + PG A SG L++GD+IL VNGR
Sbjct: 26 LVLGDGRSLGLTIRGGAEY--------GLGIYITGVDPGSEAEGSG-LKVGDQILEVNGR 76
Query: 223 DVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQEI 259
+ H+EAV LL+ ++L ++ +
Sbjct: 77 SFLNILHDEAV-RLLKSSRHLILTVKDVGRLPHARTT 112
Score = 83.3 bits (206), Expect = 2e-19
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 14/126 (11%)
Query: 249 HDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGR 308
H +++ L+ +G LG+ I+GG + G++IT ++ G A+ G
Sbjct: 14 HLLQGGDEKKVNLVLGDGRSLGLTIRGGA---------EYGLGIYITGVDPGSEAEGSG- 63
Query: 309 LKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSV 368
LKVG ++LEVNG S L H EAV L+ S H + LTV + G + +T + ++ +
Sbjct: 64 LKVGDQILEVNGRSFLNILHDEAVRLLKSSRH-LILTVK---DVGRLPHARTTVDETKWI 119
Query: 369 TQSMSS 374
S
Sbjct: 120 ASSSGP 125
Score = 46.3 bits (110), Expect = 1e-06
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQ 88
VG ++LEVNG S L H EAV L+ S H + LTV + G + +T + ++ +
Sbjct: 66 VGDQILEVNGRSFLNILHDEAVRLLKSSRH-LILTVK---DVGRLPHARTTVDETKWIAS 121
Query: 89 SMSS 92
S
Sbjct: 122 SSGP 125
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 83.8 bits (208), Expect = 2e-20
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V L GP GF + GG D + + IS I PG AA S L GD ++A++G
Sbjct: 5 VTLTGPGPWGFRLQGGKDFNM--------PLTISRITPGSKAAQSQ-LSQGDLVVAIDGV 55
Query: 223 DVSKVTHEEAVLALLEPCPEILLKIQHDP 251
+ +TH EA + + L +Q
Sbjct: 56 NTDTMTHLEAQNKIKSASYNLSLTLQKSK 84
Score = 66.9 bits (164), Expect = 3e-14
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+TL G ++GG + + I++I G A + +L G ++
Sbjct: 3 YSVTLTGPGP--WGFRLQGGKD---------FNMPLTISRITPGSKAAQ-SQLSQGDLVV 50
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
++G++ +H EA N ++ + + +SLT+ K
Sbjct: 51 AIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKS 83
Score = 45.3 bits (108), Expect = 1e-06
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
G ++ ++G++ +H EA N ++ + + +SLT+ K
Sbjct: 45 QGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKS 83
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 84.5 bits (209), Expect = 3e-20
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 150 SPSVRSSSLFLQDVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALS-G 208
+ + +L L + ++G GF++ GG D + +S + PG A L
Sbjct: 10 NGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKM--------PVIVSRVAPGTPADLCVP 61
Query: 209 KLRMGDRILAVNGRDVSKVTHEEAVLAL 236
+L GD+++ +NGRD+++ TH++ VL +
Sbjct: 62 RLNEGDQVVLINGRDIAEHTHDQVVLFI 89
Score = 77.5 bits (191), Expect = 1e-17
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 250 DPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKR-DGR 308
+ I + E + G ++KGG V ++++ G A R
Sbjct: 12 GIPHDNLVLIRMKPDENGRFGFNVKGGY---------DQKMPVIVSRVAPGTPADLCVPR 62
Query: 309 LKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
L G +++ +NG + +H + V ++ S + S +
Sbjct: 63 LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGEL 100
Score = 44.0 bits (104), Expect = 6e-06
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G +++ +NG + +H + V ++ S + S +
Sbjct: 65 EGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGEL 100
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 83.2 bits (206), Expect = 6e-20
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Query: 163 VVLPKS-GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
+ L K+ PLG +I I ++ I+ GG A SG + +GD + VNG
Sbjct: 8 IRLVKNREPLGATIKKDEQT---------GAIIVARIMRGGAADRSGLIHVGDELREVNG 58
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKI---QHDPHP 253
V EE + L + I KI + P
Sbjct: 59 IPVEDKRPEEIIQILAQSQGAITFKIIPGSKEETP 93
Score = 76.6 bits (189), Expect = 2e-17
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 262 IRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGM 321
+ + E LG IK + + + +I GGAA R G + VG L EVNG+
Sbjct: 10 LVKNREPLGATIKKD----------EQTGAIIVARIMRGGAADRSGLIHVGDELREVNGI 59
Query: 322 SLLGASHQEAVNTLRYSGHQISLTVCKGFER 352
+ +E + L S I+ + G +
Sbjct: 60 PVEDKRPEEIIQILAQSQGAITFKIIPGSKE 90
Score = 45.8 bits (109), Expect = 9e-07
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFER 70
VG L EVNG+ + +E + L S I+ + G +
Sbjct: 49 VGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKIIPGSKE 90
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 87.5 bits (216), Expect = 1e-19
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 249 HDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGR 308
+ + +T+ + + LG+ IKGG +N + I+KI G AA +
Sbjct: 71 PEALLLQRRRVTVRKADAGGLGISIKGG---------RENKMPILISKIFKGLAADQTEA 121
Query: 309 LKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSV 368
L VG +L VNG L A+H EAV L+ +G ++ L V E + ++
Sbjct: 122 LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWD 181
Query: 369 TQSMSSLDRED 379
+ S L R+
Sbjct: 182 SPPASPLQRQP 192
Score = 87.1 bits (215), Expect = 1e-19
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 163 VVLPK--SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
V + K +G LG SI GG ++ I IS I G A + L +GD IL+VN
Sbjct: 81 VTVRKADAGGLGISIKGGRENKM--------PILISKIFKGLAADQTEALFVGDAILSVN 132
Query: 221 GRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQE 258
G D+S TH+EAV AL + E++L++++ + +
Sbjct: 133 GEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFK 170
Score = 44.7 bits (105), Expect = 2e-05
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQ 88
VG +L VNG L A+H EAV L+ +G ++ L V E + ++ +
Sbjct: 124 VGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWDSP 183
Query: 89 SMSSLDRED 97
S L R+
Sbjct: 184 PASPLQRQP 192
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 82.4 bits (204), Expect = 1e-19
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 11/94 (11%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+ + E +G+ +K + +I GG R G L VG + E
Sbjct: 4 LVQFQKNTDEPMGITLKMN-----------ELNHCIVARIMHGGMIHRQGTLHVGDEIRE 52
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFE 351
+NG+S+ + ++ LR I+ + +
Sbjct: 53 INGISVANQTVEQLQKMLREMRGSITFKIVPSYR 86
Score = 73.5 bits (181), Expect = 1e-16
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 163 VVLPKS--GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
V K+ P+G ++ + ++ I+ GG+ G L +GD I +N
Sbjct: 5 VQFQKNTDEPMGITLKMNELN----------HCIVARIMHGGMIHRQGTLHVGDEIREIN 54
Query: 221 GRDVSKVTHEEAVLALLEPCPEILLKI 247
G V+ T E+ L E I KI
Sbjct: 55 GISVANQTVEQLQKMLREMRGSITFKI 81
Score = 45.0 bits (107), Expect = 2e-06
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFE 69
VG + E+NG+S+ + ++ LR I+ + +
Sbjct: 46 VGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYR 86
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 81.9 bits (203), Expect = 1e-19
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V + P GF I GG D I ++ + G A + LR GD I+A+NG
Sbjct: 6 VDVAGPAPWGFRITGGRDFHT--------PIMVTKVAERGKAKDAD-LRPGDIIVAINGE 56
Query: 223 DVSKVTHEEAVLALLEPCPEILLKIQ 248
+ H EA + + + L++
Sbjct: 57 SAEGMLHAEAQSKIRQSPSPLRLQLD 82
Score = 68.5 bits (168), Expect = 9e-15
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
+T+ G I GG + +TK+ G AK L+ G ++
Sbjct: 2 MALTVDVAGPAPWGFRITGGRD---------FHTPIMVTKVAERGKAKD-ADLRPGDIIV 51
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
+NG S G H EA + +R S + L + +
Sbjct: 52 AINGESAEGMLHAEAQSKIRQSPSPLRLQLDRI 84
Score = 43.8 bits (104), Expect = 5e-06
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
G ++ +NG S G H EA + +R S + L + +
Sbjct: 46 PGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRI 84
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 82.0 bits (203), Expect = 1e-19
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 166 PKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVS 225
GFS+ G G+++ +I P G L G L+ DR+L VN
Sbjct: 16 SGMEDFGFSVADGLLE---------KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTR 65
Query: 226 KVTHEEAVLALLEPCPEILLKIQHDP 251
V + E ++ L I +P
Sbjct: 66 DFDCCLVVPLIAESGNKLDLVISRNP 91
Score = 80.9 bits (200), Expect = 4e-19
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 251 PHPEGFQEITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRL 309
P P ++TL + G + G + G ++GV++ I G G L
Sbjct: 2 PTPVELHKVTLYKDSGMEDFGFSVADG----------LLEKGVYVKNIRPAGPGDLGG-L 50
Query: 310 KVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
K RLL+VN + V + SG+++ L +
Sbjct: 51 KPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVI 87
Score = 45.8 bits (109), Expect = 8e-07
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
RLL+VN + V + SG+++ L +
Sbjct: 52 PYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVI 87
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 81.9 bits (203), Expect = 1e-19
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V L P GF + GG D + + IS + GG AA + +R+GD +L+++G
Sbjct: 7 VSLVGPAPWGFRLQGGKDFNM--------PLTISSLKDGGKAAQAN-VRIGDVVLSIDGI 57
Query: 223 DVSKVTHEEAVLALLEPCPEILLKIQ 248
+ +TH EA + + + +Q
Sbjct: 58 NAQGMTHLEAQNKIKGCTGSLNMTLQ 83
Score = 69.2 bits (170), Expect = 5e-15
Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
++ G ++GG + + I+ + GG A + +++G +
Sbjct: 2 MSNYSVSLVGPAPWGFRLQGGKD---------FNMPLTISSLKDGGKAAQ-ANVRIGDVV 51
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
L ++G++ G +H EA N ++ +++T+
Sbjct: 52 LSIDGINAQGMTHLEAQNKIKGCTGSLNMTL 82
Score = 44.2 bits (105), Expect = 3e-06
Identities = 9/36 (25%), Positives = 22/36 (61%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
+G +L ++G++ G +H EA N ++ +++T+
Sbjct: 47 IGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTL 82
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 82.4 bits (204), Expect = 1e-19
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
VVLP P GF + GG D + + I+ I PG AA + L GD ILA++G
Sbjct: 9 VVLPGPAPWGFRLSGGIDFNQ--------PLVITRITPGSKAAAAN-LCPGDVILAIDGF 59
Query: 223 DVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
+TH +A + ++ LKI
Sbjct: 60 GTESMTHADAQDRIKAASYQLCLKIDRAETR 90
Score = 69.7 bits (171), Expect = 6e-15
Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 20/118 (16%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
++ G + GG+ ++ + IT+I G A L G +L
Sbjct: 5 SSGNVVLPGPAPWGFRLSGGID---------FNQPLVITRITPGSKAAA-ANLCPGDVIL 54
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQSMSS 374
++G +H +A + ++ + +Q+ L + RA T S V+ SS
Sbjct: 55 AIDGFGTESMTHADAQDRIKAASYQLCLKI----------DRAETRLWSPQVSSGPSS 102
Score = 45.8 bits (109), Expect = 1e-06
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQ 88
G +L ++G +H +A + ++ + +Q+ L + RA T S V+
Sbjct: 49 PGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKI----------DRAETRLWSPQVSS 98
Query: 89 SMSS 92
SS
Sbjct: 99 GPSS 102
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 89.6 bits (221), Expect = 2e-19
Identities = 37/159 (23%), Positives = 55/159 (34%), Gaps = 25/159 (15%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V K +G + GG D GIF++ ++ AA G L GD+IL VN
Sbjct: 5 VKFRKGDSVGLRLAGGNDV----------GIFVAGVLEDSPAAKEG-LEEGDQILRVNNV 53
Query: 223 DVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQEIT-LIRQEGEKLGMHI------KG 275
D + + EEAVL LL+ + I + ++ I + + H
Sbjct: 54 DFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPY 113
Query: 276 GLRGQRGNPL---DKNDEGV----FITKINSGGAAKRDG 307
GL +G D G +I G
Sbjct: 114 GLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERG 152
Score = 65.3 bits (158), Expect = 1e-11
Identities = 25/141 (17%), Positives = 55/141 (39%), Gaps = 18/141 (12%)
Query: 264 QEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSL 323
++G+ +G+ + GG ND G+F+ + A ++G L+ G ++L VN +
Sbjct: 8 RKGDSVGLRLAGG-----------NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDF 55
Query: 324 LGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQSMSSLDREDLD-- 381
+EAV L +T+ ++ R + G ++ ++E
Sbjct: 56 TNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGL 115
Query: 382 ----TDVFKQEEEMKKELVEW 398
+VF+ + + +
Sbjct: 116 SFNKGEVFRVVDTLYNGKLGS 136
Score = 36.4 bits (83), Expect = 0.018
Identities = 14/79 (17%), Positives = 29/79 (36%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQ 88
G ++L VN + +EAV L +T+ ++ R + G +
Sbjct: 43 EGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIR 102
Query: 89 SMSSLDREDLDTDVFKQGQ 107
+ ++E F +G+
Sbjct: 103 THFEYEKESPYGLSFNKGE 121
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 81.6 bits (202), Expect = 2e-19
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
VVL P GF + GG D + + IS + PGG AA +G + +GD +L+++G
Sbjct: 7 VVLEGPAPWGFRLQGGKDFNV--------PLSISRLTPGGKAAQAG-VAVGDWVLSIDGE 57
Query: 223 DVSKVTHEEAVLALLEPCPEILLKIQ 248
+ +TH EA + + L +
Sbjct: 58 NAGSLTHIEAQNKIRACGERLSLGLS 83
Score = 72.0 bits (177), Expect = 6e-16
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
++ + G ++GG + + I+++ GG A + G + VG +
Sbjct: 2 MDSFKVVLEGPAPWGFRLQGGKD---------FNVPLSISRLTPGGKAAQAG-VAVGDWV 51
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFER 352
L ++G + +H EA N +R G ++SL + +
Sbjct: 52 LSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAITS 88
Score = 45.8 bits (109), Expect = 1e-06
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFER 70
VG +L ++G + +H EA N +R G ++SL + +
Sbjct: 47 VGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAITS 88
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 80.9 bits (200), Expect = 4e-19
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 157 SLFLQDVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRI 216
S+ Q + L GP GF ++GG D + IS + PG AAL+ L +GD I
Sbjct: 1 SMTTQQIDLQGPGPWGFRLVGGKDFEQ--------PLAISRVTPGSKAALAN-LCIGDVI 51
Query: 217 LAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
A++G + S +TH EA + + L + H
Sbjct: 52 TAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSEHE 88
Score = 69.3 bits (170), Expect = 5e-15
Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
+ Q G + GG ++ + I+++ G A L +G + +
Sbjct: 5 QQIDLQGPGPWGFRLVGGKD---------FEQPLAISRVTPGSKAAL-ANLCIGDVITAI 54
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDI 355
+G + +H EA N ++ ++LTV + D+
Sbjct: 55 DGENTSNMTHLEAQNRIKGCTDNLTLTVARSEHESDL 91
Score = 46.6 bits (111), Expect = 5e-07
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDI 73
+G + ++G + +H EA N ++ ++LTV + D+
Sbjct: 47 IGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSEHESDL 91
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 80.9 bits (200), Expect = 5e-19
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V L P GF + GG D + + IS + GG A+ + +R+GD +L+++G
Sbjct: 9 VSLVGPAPWGFRLQGGKDFNM--------PLTISSLKDGGKASQAH-VRIGDVVLSIDGI 59
Query: 223 DVSKVTHEEAVLALLEPCPEILLKIQHDPHP 253
+TH EA + + + +Q
Sbjct: 60 SAQGMTHLEAQNKIKACTGSLNMTLQRASAA 90
Score = 66.2 bits (162), Expect = 8e-14
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 22/117 (18%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
++L+ G ++GG + + I+ + GG A +++G +L
Sbjct: 8 SVSLVGPAP--WGFRLQGGKD---------FNMPLTISSLKDGGKA-SQAHVRIGDVVLS 55
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQSMSS 374
++G+S G +H EA N ++ +++T+ +RAS + S V+ SS
Sbjct: 56 IDGISAQGMTHLEAQNKIKACTGSLNMTL----------QRASAAAKSEPVSSGPSS 102
Score = 45.0 bits (107), Expect = 2e-06
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQ 88
+G +L ++G+S G +H EA N ++ +++T+ +RAS + S V+
Sbjct: 49 IGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTL----------QRASAAAKSEPVSS 98
Query: 89 SMSS 92
SS
Sbjct: 99 GPSS 102
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 80.8 bits (200), Expect = 5e-19
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 163 VVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGR 222
V L P GF++ GG +H + +S I GG AALS K+R GD ++ +NG
Sbjct: 15 VQLQGGAPWGFTLKGGLEHCE--------PLTVSKIEDGGKAALSQKMRTGDELVNINGT 66
Query: 223 DVSKVTHEEAVLALLEPCPEILLKIQHDP 251
+ + +EA++ + + L ++
Sbjct: 67 PLY-GSRQEALILIKGSFRILKLIVRRRN 94
Score = 75.5 bits (186), Expect = 4e-17
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRL 315
FQ + + Q G G +KGGL ++ E + ++KI GG A +++ G L
Sbjct: 10 FQYVPVQLQGGAPWGFTLKGGL---------EHCEPLTVSKIEDGGKAALSQKMRTGDEL 60
Query: 316 LEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
+ +NG L G S QEA+ ++ S + L V
Sbjct: 61 VNINGTPLYG-SRQEALILIKGSFRILKLIV 90
Score = 39.2 bits (92), Expect = 2e-04
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G L+ +NG L G S QEA+ ++ S + L V
Sbjct: 56 TGDELVNINGTPLYG-SRQEALILIKGSFRILKLIV 90
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 80.5 bits (199), Expect = 6e-19
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
+TL + + + G I+ G + + F+ +++ A+ G L G + V
Sbjct: 8 LTLEKGDNQTFGFEIQTY--GLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASV 64
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
NG+++ G H+E V+ ++ SG+ + L G
Sbjct: 65 NGLNVEGIRHREIVDIIKASGNVLRLETLYG 95
Score = 68.2 bits (167), Expect = 1e-14
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 163 VVLPK--SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
+ L K + GF I H + + F++ + A L+G L GD I +VN
Sbjct: 8 LTLEKGDNQTFGFEIQTYGLHH-REEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVN 65
Query: 221 GRDVSKVTHEEAV 233
G +V + H E V
Sbjct: 66 GLNVEGIRHREIV 78
Score = 48.9 bits (117), Expect = 8e-08
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
G + VNG+++ G H+E V+ ++ SG+ + L G
Sbjct: 57 PGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLYG 95
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 80.1 bits (198), Expect = 7e-19
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 163 VVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
V L KS + + + IF+ I +AA G ++ GD +L +NG
Sbjct: 6 VTLVKSAKNEEYGLRLAS------------HIFVKEISQDSLAARDGNIQEGDVVLKING 53
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
++ +A + ++ + +Q D
Sbjct: 54 TVTENMSLTDAKTLIERSKGKLKMVVQRDERAT 86
Score = 74.4 bits (183), Expect = 8e-17
Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 258 EITLIR-QEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
++TL++ + E+ G+ + +F+ +I+ A RDG ++ G +L
Sbjct: 5 KVTLVKSAKNEEYGLRLASH---------------IFVKEISQDSLAARDGNIQEGDVVL 49
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
++NG S +A + S ++ + V +
Sbjct: 50 KINGTVTENMSLTDAKTLIERSKGKLKMVVQRD 82
Score = 47.0 bits (112), Expect = 4e-07
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
G +L++NG S +A + S ++ + V +
Sbjct: 44 EGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD 82
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 76.9 bits (190), Expect = 9e-18
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 163 VVLPKS-GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
V L KS + + + IF+ I +AA G ++ GD +L +NG
Sbjct: 4 VTLVKSRKNEEYGLRLAS------------HIFVKEISQDSLAARDGNIQEGDVVLKING 51
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHD 250
++ +A + ++ + +Q D
Sbjct: 52 TVTENMSLTDAKTLIERSKGKLKMVVQRD 80
Score = 74.2 bits (183), Expect = 7e-17
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
+F+ +I+ A RDG ++ G +L++NG S +A + S ++ + V +
Sbjct: 22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQR 79
Score = 45.7 bits (109), Expect = 7e-07
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
G +L++NG S +A + S ++ + V +
Sbjct: 42 EGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQR 79
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 75.9 bits (187), Expect = 4e-17
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
E L +QEG+ G ++ +K+ +G I I G A++ G L G R+L
Sbjct: 4 ESKLSKQEGQNYGFFLRI----------EKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLR 52
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
+NG+ + H + V +R SG+ ++L V G
Sbjct: 53 INGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 84
Score = 64.8 bits (158), Expect = 3e-13
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 162 DVVLPKS--GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
+ L K GF + D G I I G A +G L GDR+L +
Sbjct: 4 ESKLSKQEGQNYGFFLRIEKD---------TDGHLIRVIEEGSPAEKAG-LLDGDRVLRI 53
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKIQ 248
NG V K H + V + + + L +
Sbjct: 54 NGVFVDKEEHAQVVELVRKSGNSVTLLVL 82
Score = 46.7 bits (111), Expect = 7e-07
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
G R+L +NG+ + H + V +R SG+ ++L V G
Sbjct: 46 DGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 84
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 75.6 bits (186), Expect = 5e-17
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+T+ +Q+ E G I+ + ++ I KI A G L+ G L
Sbjct: 18 LVTVEKQDNETFGFEIQSY--RPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLAN 74
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTV 346
+NG+S G ++++ V+ +R SG+ +++
Sbjct: 75 INGVSTEGFTYKQVVDLIRSSGNLLTIET 103
Score = 67.9 bits (166), Expect = 2e-14
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 4/88 (4%)
Query: 162 DVVLPKSGP--LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
V + K GF I + + I I A +G L+ GD + +
Sbjct: 18 LVTVEKQDNETFGFEIQSYRPQNQ-NACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANI 75
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKI 247
NG T+++ V + + ++
Sbjct: 76 NGVSTEGFTYKQVVDLIRSSGNLLTIET 103
Score = 45.5 bits (108), Expect = 2e-06
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G L +NG+S G ++++ V+ +R SG+ +++
Sbjct: 68 AGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 75.6 bits (186), Expect = 5e-17
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
E L +QEG+ G ++ +K+ +G I I G A++ G L G R+L
Sbjct: 16 ECKLSKQEGQNYGFFLRI----------EKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLR 64
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
+NG+ + H + V +R SG+ ++L V G
Sbjct: 65 INGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 96
Score = 65.2 bits (159), Expect = 2e-13
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 162 DVVLPKS--GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
+ L K GF + D G I I G A +G L GDR+L +
Sbjct: 16 ECKLSKQEGQNYGFFLRIEKD---------TDGHLIRVIEEGSPAEKAG-LLDGDRVLRI 65
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKIQ 248
NG V K H + V + + + L +
Sbjct: 66 NGVFVDKEEHAQVVELVRKSGNSVTLLVL 94
Score = 46.7 bits (111), Expect = 9e-07
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
G R+L +NG+ + H + V +R SG+ ++L V G
Sbjct: 58 DGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 96
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 75.5 bits (186), Expect = 5e-17
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 163 VVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
L K G GFS+ G++++ I P GVA +G + D ++ VNG
Sbjct: 12 CYLVKEGGSYGFSLKTVQGK---------KGVYMTDITPQGVAMRAG-VLADDHLIEVNG 61
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQE 258
+V +HEE V + + ++ + + E
Sbjct: 62 ENVEDASHEEVVEKVKKSGSRVMFLLVDKETDKRHVE 98
Score = 72.8 bits (179), Expect = 4e-16
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
L+++ G G +K + +GV++T I G A R G + L+EV
Sbjct: 12 CYLVKEGGS-YGFSLKTV----------QGKKGVYMTDITPQGVAMRAG-VLADDHLIEV 59
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTVC-KGFERGDIERRASTSEG 364
NG ++ ASH+E V ++ SG ++ + K ++ +E+++ S G
Sbjct: 60 NGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDKRHVEQKSGPSSG 106
Score = 47.4 bits (113), Expect = 3e-07
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 28 PVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC-KGFERGDIERRASTSEG 82
L+EVNG ++ ASH+E V ++ SG ++ + K ++ +E+++ S G
Sbjct: 51 LADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDKRHVEQKSGPSSG 106
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 74.5 bits (183), Expect = 1e-16
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 258 EITLIRQEGEKLGMHIKGGLR---GQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMR 314
+ L +++ E G ++G + P ++ ++ GG A R G L++G
Sbjct: 10 TVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDF 68
Query: 315 LLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDI 355
L+EVNG +++ H++ VN +R G+ + + V D+
Sbjct: 69 LIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDM 109
Score = 69.5 bits (170), Expect = 6e-15
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 162 DVVLPKSGP--LGFSIIGGTDHS----CIPFGQHKPGIFISHIVPGGVAALSGKLRMGDR 215
V+L K GF + G + P ++ + GGVA +G LRMGD
Sbjct: 10 TVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDF 68
Query: 216 ILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQH-DPHPE 254
++ VNG++V KV H + V + + +++K+ HP+
Sbjct: 69 LIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPD 108
Score = 44.8 bits (106), Expect = 3e-06
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDI 73
+G L+EVNG +++ H++ VN +R G+ + + V D+
Sbjct: 65 MGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDM 109
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 73.5 bits (181), Expect = 2e-16
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 163 VVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
VV+ K GF + G + + G I I PG A +G L+ D ++AVNG
Sbjct: 9 VVIKKGSNGYGFYLRAGPE---------QKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNG 58
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQE 258
+ V + H+ V + + + L + ++
Sbjct: 59 KSVEALDHDGVVEMIRKGGDQTTLLVLDKELERPHRD 95
Score = 66.9 bits (164), Expect = 3e-14
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 262 IRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGM 321
I++ G +++ G +G I I G A+ G LK ++ VNG
Sbjct: 11 IKKGSNGYGFYLRAG----------PEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGK 59
Query: 322 SLLGASHQEAVNTLRYSGHQISLTVC 347
S+ H V +R G Q +L V
Sbjct: 60 SVEALDHDGVVEMIRKGGDQTTLLVL 85
Score = 44.6 bits (106), Expect = 3e-06
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 65
++ VNG S+ H V +R G Q +L V
Sbjct: 49 NNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVL 85
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 72.3 bits (178), Expect = 4e-16
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
L + E G H+ + G FI ++ GG A G L+ ++EV
Sbjct: 7 CRLAKGENG-YGFHLNAI----------RGLPGSFIKEVQKGGPADLAG-LEDEDVIIEV 54
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTVC 347
NG+++L +++ V+ ++ SG ++L VC
Sbjct: 55 NGVNVLDEPYEKVVDRIQSSGKNVTLLVC 83
Score = 68.1 bits (167), Expect = 1e-14
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 163 VVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
L K GF + + PG FI + GG A L+G L D I+ VNG
Sbjct: 7 CRLAKGENGYGFHLNAI---------RGLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNG 56
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKI 247
+V +E+ V + + L +
Sbjct: 57 VNVLDEPYEKVVDRIQSSGKNVTLLV 82
Score = 48.0 bits (115), Expect = 2e-07
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 28 PVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 65
++EVNG+++L +++ V+ ++ SG ++L VC
Sbjct: 46 EDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVC 83
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 71.9 bits (177), Expect = 5e-16
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 163 VVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
L K GF + G + K G +I + PG A +G L GDR++ VNG
Sbjct: 7 CCLEKGPNGYGFHLHGE---------KGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNG 56
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGF 256
+V K TH++ V + + L + E
Sbjct: 57 ENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQL 91
Score = 70.8 bits (174), Expect = 2e-15
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
L + G H+ G K G +I + G A++ G L G RL+EV
Sbjct: 7 CCLEKGPNG-YGFHLHGE----------KGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEV 54
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTVCK 348
NG ++ +HQ+ V+ +R + + + L V
Sbjct: 55 NGENVEKETHQQVVSRIRAALNAVRLLVVD 84
Score = 46.1 bits (110), Expect = 8e-07
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
G RL+EVNG ++ +HQ+ V+ +R + + + L V
Sbjct: 47 AGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVD 84
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 72.1 bits (177), Expect = 6e-16
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 12/81 (14%)
Query: 168 SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKV 227
S GF+I PGIF++ + G A S L++ D I+A+N S
Sbjct: 16 SLDFGFTIKWD-----------IPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYN 63
Query: 228 THEEAVLALLEPCPEILLKIQ 248
+E A+ + L +
Sbjct: 64 DSKEWEEAMAKAQETGHLVMD 84
Score = 61.3 bits (149), Expect = 3e-12
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 13/88 (14%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
I + G IK G+F+ + +G A+ +L+V ++ +
Sbjct: 9 INQTPGKSLDFGFTIKWD------------IPGIFVASVEAGSPAEF-SQLQVDDEIIAI 55
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTV 346
N +E + + L +
Sbjct: 56 NNTKFSYNDSKEWEEAMAKAQETGHLVM 83
Score = 38.9 bits (91), Expect = 2e-04
Identities = 4/36 (11%), Positives = 11/36 (30%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
V ++ +N +E + + L +
Sbjct: 48 VDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVM 83
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 73.1 bits (179), Expect = 6e-16
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 258 EITLIRQEGEKLGMHIKGGLR---GQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMR 314
+ L +++ E G ++G + P ++ ++ GG A R G L++G
Sbjct: 30 TVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDF 88
Query: 315 LLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIE 356
L+EVNG +++ H++ VN +R G+ + + V D++
Sbjct: 89 LIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMD 130
Score = 68.5 bits (167), Expect = 3e-14
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 9/117 (7%)
Query: 150 SPSVRSSSLFLQ--DVVLPKSGP--LGFSIIGGTDHS----CIPFGQHKPGIFISHIVPG 201
P S ++ V+L K GF + G + P ++ + G
Sbjct: 16 VPRGSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEG 75
Query: 202 GVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQE 258
GVA +G LRMGD ++ VNG++V KV H + V + + +++K+ E
Sbjct: 76 GVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDE 131
Score = 45.3 bits (107), Expect = 3e-06
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIE 74
+G L+EVNG +++ H++ VN +R G+ + + V D++
Sbjct: 85 MGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMD 130
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 73.0 bits (179), Expect = 7e-16
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 11/101 (10%)
Query: 163 VVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
+ K GF++ KPG FI + P A SG LR DRI+ VNG
Sbjct: 13 CTMKKGPSGYGFNLHSDKS---------KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNG 62
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQEITLI 262
+ H + V A+ E L + E F++ +I
Sbjct: 63 VCMEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVI 103
Score = 68.0 bits (166), Expect = 3e-14
Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 13/116 (11%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
T+ + G ++ K+ G FI ++ A+ G L+ R++EV
Sbjct: 13 CTMKKGPSG-YGFNLHSD----------KSKPGQFIRSVDPDSPAEASG-LRAQDRIVEV 60
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQSMSS 374
NG+ + G H + V+ +R G + L V E + ++ + +
Sbjct: 61 NGVCMEGKQHGDVVSAIRAGGDETKLLVVDR-ETDEFFKKCRVIPSQEHLNGPLPV 115
Score = 44.1 bits (104), Expect = 8e-06
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQ 88
R++EVNG+ + G H + V+ +R G + L V E + ++ +
Sbjct: 53 AQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR-ETDEFFKKCRVIPSQEHLNG 111
Query: 89 SMSS 92
+
Sbjct: 112 PLPV 115
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 71.2 bits (175), Expect = 8e-16
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 17/88 (19%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
IT+ + +G K G IT I +A R+G L + E+
Sbjct: 8 ITMHKDSTGHVGFIFKNGK----------------ITSIVKDSSAARNG-LLTEHNICEI 50
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTV 346
NG +++G + + L SG +++T+
Sbjct: 51 NGQNVIGLKDSQIADILSTSGTVVTITI 78
Score = 63.5 bits (155), Expect = 4e-13
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 18/88 (20%)
Query: 162 DVVLPK--SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAV 219
+ + K +G +GF G I+ IV AA +G L I +
Sbjct: 7 TITMHKDSTGHVGFIFKNGK---------------ITSIVKDSSAARNG-LLTEHNICEI 50
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKI 247
NG++V + + L + + I
Sbjct: 51 NGQNVIGLKDSQIADILSTSGTVVTITI 78
Score = 46.5 bits (111), Expect = 4e-07
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
+ E+NG +++G + + L SG +++T+
Sbjct: 43 TEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 78
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 71.2 bits (175), Expect = 1e-15
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 163 VVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
+ K GF++ KPG FI + P A SG LR DRI+ VNG
Sbjct: 13 CTMKKGPSGYGFNLHSDKS---------KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNG 62
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGF 256
+ H + V A+ E L + D + F
Sbjct: 63 VCMEGKQHGDVVSAIRAGGDETKLLVV-DRETDEF 96
Score = 69.7 bits (171), Expect = 4e-15
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 262 IRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGM 321
+++ G ++ K+ G FI ++ A+ G L+ R++EVNG+
Sbjct: 15 MKKGPSGYGFNLHSD----------KSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGV 63
Query: 322 SLLGASHQEAVNTLRYSGHQISLTVC 347
+ G H + V+ +R G + L V
Sbjct: 64 CMEGKQHGDVVSAIRAGGDETKLLVV 89
Score = 46.2 bits (110), Expect = 9e-07
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 65
R++EVNG+ + G H + V+ +R G + L V
Sbjct: 53 AQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVV 89
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 70.9 bits (174), Expect = 2e-15
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 260 TLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVN 319
+I G+K G ++ R G+ D + + G A+ G L+ G + +N
Sbjct: 6 IVIHSSGKKYGFSLRAI-RVYMGDS-DVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHIN 62
Query: 320 GMSLLGASHQEAVNTLRYSGHQISLTVC 347
G S+LG H + V L SG++ISL
Sbjct: 63 GESVLGLVHMDVVELLLKSGNKISLRTT 90
Score = 65.5 bits (160), Expect = 1e-13
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 163 VVLPKSG-PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
+V+ SG GFS+ + + + + G A +G LR GD I +NG
Sbjct: 6 IVIHSSGKKYGFSLRAIRVYMG-DSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHING 63
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQ 248
V + H + V LL+ +I L+
Sbjct: 64 ESVLGLVHMDVVELLLKSGNKISLRTT 90
Score = 47.0 bits (112), Expect = 5e-07
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 65
G + +NG S+LG H + V L SG++ISL
Sbjct: 54 AGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTT 90
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 71.9 bits (176), Expect = 2e-15
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 274 KGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVN 333
+ G RG + + + +F+ ++ GG A G L G R+++VNG S++G ++ + +
Sbjct: 45 ENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIA 103
Query: 334 TLRYSGHQISLTVC 347
++ S + L+V
Sbjct: 104 LIQNSDTTLELSVM 117
Score = 59.6 bits (144), Expect = 3e-11
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 177 GGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLAL 236
G + IF+ + GG A +G L GDRI+ VNG V T+ + + +
Sbjct: 47 GNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALI 105
Query: 237 LEPCPEILLKIQ 248
+ L +
Sbjct: 106 QNSDTTLELSVM 117
Score = 48.4 bits (115), Expect = 2e-07
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 65
G R+++VNG S++G ++ + + ++ S + L+V
Sbjct: 81 TGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVM 117
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 70.0 bits (172), Expect = 2e-15
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 163 VVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
L K GF++ + +PG +I + PG AA SG LR DR++ VNG
Sbjct: 8 CHLRKGPQGYGFNLHSD---------KSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNG 57
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKI 247
++V + H E V ++ E L +
Sbjct: 58 QNVEGLRHAEVVASIKAREDEARLLV 83
Score = 69.6 bits (171), Expect = 4e-15
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 262 IRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGM 321
+R+ + G ++ K+ G +I ++ G A R G L+ RL+EVNG
Sbjct: 10 LRKGPQGYGFNLHSD----------KSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQ 58
Query: 322 SLLGASHQEAVNTLRYSGHQISLTVCK 348
++ G H E V +++ + L V
Sbjct: 59 NVEGLRHAEVVASIKAREDEARLLVVG 85
Score = 45.7 bits (109), Expect = 1e-06
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCK 66
RL+EVNG ++ G H E V +++ + L V
Sbjct: 48 AQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 85
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 69.6 bits (171), Expect = 3e-15
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 163 VVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
V + + GF++ G +S ++ G A G LR GD+ILAVN
Sbjct: 6 VEVARGRAGYGFTLSGQA------------PCVLSCVMRGSPADFVG-LRAGDQILAVNE 52
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
+V K +HE+ V + + + + I
Sbjct: 53 INVKKASHEDVVKLIGKCSGVLHMVIAEGV 82
Score = 69.2 bits (170), Expect = 4e-15
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 15/91 (16%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
+ + R G + G ++ + G A G L+ G ++L V
Sbjct: 6 VEVARGRAG-YGFTLSG-------------QAPCVLSCVMRGSPADFVG-LRAGDQILAV 50
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
N +++ ASH++ V + + + + +G
Sbjct: 51 NEINVKKASHEDVVKLIGKCSGVLHMVIAEG 81
Score = 46.4 bits (111), Expect = 4e-07
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
G ++L VN +++ ASH++ V + + + + +G
Sbjct: 43 AGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAEG 81
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 70.1 bits (172), Expect = 3e-15
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
+ L + + G ++ +G G P G F+ +++ G AK+ G ++ G RL+ V
Sbjct: 7 LHLEKGP-QGFGFLLREE-KGLDGRP------GQFLWEVDPGLPAKKAG-MQAGDRLVAV 57
Query: 319 NGMSLLGASHQEAVNTLRYSGHQISLTVC 347
G S+ G H+E V+ ++ G +SLTV
Sbjct: 58 AGESVEGLGHEETVSRIQGQGSCVSLTVV 86
Score = 67.0 bits (164), Expect = 3e-14
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 163 VVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
+ L K GF + +PG F+ + PG A +G ++ GDR++AV G
Sbjct: 7 LHLEKGPQGFGFLLREEKGLD------GRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAG 59
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKI 247
V + HEE V + + L +
Sbjct: 60 ESVEGLGHEETVSRIQGQGSCVSLTV 85
Score = 47.7 bits (114), Expect = 2e-07
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 65
G RL+ V G S+ G H+E V+ ++ G +SLTV
Sbjct: 50 AGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVV 86
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 69.3 bits (170), Expect = 7e-15
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 163 VVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
VV+ K S GF + G + G I I PG A +G L+ D ++AVNG
Sbjct: 10 VVIKKGSNGYGFYLRAGPEQ---------KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNG 59
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
+ V + H+ V + + + L +
Sbjct: 60 KSVEALDHDGVVEMIRKGGDQTTLLVLDKEAES 92
Score = 67.8 bits (166), Expect = 2e-14
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 12/103 (11%)
Query: 262 IRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGM 321
I++ G +++ G +G I I G A+ G LK ++ VNG
Sbjct: 12 IKKGSNGYGFYLRAG----------PEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGK 60
Query: 322 SLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEG 364
S+ H V +R G Q +L V E I + S G
Sbjct: 61 SVEALDHDGVVEMIRKGGDQTTLLVLDK-EAESIYSLSGPSSG 102
Score = 45.4 bits (108), Expect = 1e-06
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEG 82
++ VNG S+ H V +R G Q +L V E I + S G
Sbjct: 50 NNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDK-EAESIYSLSGPSSG 102
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 68.1 bits (167), Expect = 1e-14
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 163 VVLPKS-GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
V++ K GF++ G + + + PGG A +G ++ GDRI+ VNG
Sbjct: 12 VIIQKDQHGFGFTVSGD------------RIVLVQSVRPGGAAMKAG-VKEGDRIIKVNG 58
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
V+ +H E V L++ + L +
Sbjct: 59 TMVTNSSHLEVV-KLIKSGAYVALTLLGSS 87
Score = 62.3 bits (152), Expect = 1e-12
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 251 PHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLK 310
G Q +I+++ G + G D V + + GGAA + G +K
Sbjct: 3 SGSSGVQRCVIIQKDQHGFGFTVSG-------------DRIVLVQSVRPGGAAMKAG-VK 48
Query: 311 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 347
G R+++VNG + +SH E V ++ SG ++LT+
Sbjct: 49 EGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYVALTLL 84
Score = 41.1 bits (97), Expect = 4e-05
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVC 65
G R+++VNG + +SH E V ++ SG ++LT+
Sbjct: 49 EGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYVALTLL 84
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 68.3 bits (167), Expect = 2e-14
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 163 VVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
+ G LGF++ G + + + P A+++G R GD I+++
Sbjct: 27 IRFTAEEGDLGFTLRGNA------------PVQVHFLDPYCSASVAG-AREGDYIVSIQL 73
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQ 248
D +T E + LL+ E ++++
Sbjct: 74 VDCKWLTLSEVM-KLLKSFGEDEIEMK 99
Score = 63.7 bits (155), Expect = 8e-13
Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 16/89 (17%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
I +EG+ LG ++G + V + ++ +A G + G ++ +
Sbjct: 27 IRFTAEEGD-LGFTLRG-------------NAPVQVHFLDPYCSASVAG-AREGDYIVSI 71
Query: 319 NGMSLLGASHQEAVNTLRYSG-HQISLTV 346
+ + E + L+ G +I + V
Sbjct: 72 QLVDCKWLTLSEVMKLLKSFGEDEIEMKV 100
Score = 42.1 bits (99), Expect = 3e-05
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSG-HQISLTV 64
G ++ + + + E + L+ G +I + V
Sbjct: 64 EGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKV 100
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 67.8 bits (166), Expect = 2e-14
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 11/78 (14%)
Query: 162 DVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVN 220
+V + K LG +I FI I GGV + +GD I ++N
Sbjct: 8 EVNVYKSEDSLGLTITDNGVG----------YAFIKRIKDGGVIDSVKTICVGDHIESIN 57
Query: 221 GRDVSKVTHEEAVLALLE 238
G ++ H + L E
Sbjct: 58 GENIVGWRHYDVAKKLKE 75
Score = 65.9 bits (161), Expect = 1e-13
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
E+ + + E + LG+ I FI +I GG + VG +
Sbjct: 8 EVNVYKSE-DSLGLTITDN-----------GVGYAFIKRIKDGGVIDSVKTICVGDHIES 55
Query: 318 VNGMSLLGASHQEAVNTLR 336
+NG +++G H + L+
Sbjct: 56 INGENIVGWRHYDVAKKLK 74
Score = 35.5 bits (82), Expect = 0.005
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLR 54
VG + +NG +++G H + L+
Sbjct: 49 VGDHIESINGENIVGWRHYDVAKKLK 74
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 67.8 bits (166), Expect = 2e-14
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 16/96 (16%)
Query: 259 ITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+ + + + G HI + + + +GG+A G+L G ++L+
Sbjct: 12 VKIDKDTLLQDYGFHISE-------------SLPLTVVAVTAGGSA--HGKLFPGDQILQ 56
Query: 318 VNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERG 353
+N S + AV+ LR + +S+TV + G
Sbjct: 57 MNNEPAEDLSWERAVDILREAEDSLSITVVRCTSSG 92
Score = 63.9 bits (156), Expect = 5e-13
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 14/86 (16%)
Query: 166 PKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVS 225
GF I + + + GG A GKL GD+IL +N
Sbjct: 18 TLLQDYGFHISESL------------PLTVVAVTAGGSA--HGKLFPGDQILQMNNEPAE 63
Query: 226 KVTHEEAVLALLEPCPEILLKIQHDP 251
++ E AV L E + + +
Sbjct: 64 DLSWERAVDILREAEDSLSITVVRCT 89
Score = 44.7 bits (106), Expect = 3e-06
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERG 71
G ++L++N S + AV+ LR + +S+TV + G
Sbjct: 50 PGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVRCTSSG 92
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 67.1 bits (164), Expect = 3e-14
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 254 EGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGM 313
+ + + + GE LG+ + + I +I GG + G L VG
Sbjct: 5 SSGRMVGIRKTAGEHLGVTFRV------------EGGELVIARILHGGMVAQQGLLHVGD 52
Query: 314 RLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERG 353
+ EVNG +G+ + LR + + L + G G
Sbjct: 53 IIKEVNGQP-VGSDPRALQELLRNASGSVILKILSGPSSG 91
Score = 65.2 bits (159), Expect = 2e-13
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 14/99 (14%)
Query: 155 SSSLFLQDVVLPKSG--PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRM 212
SS + V + K+ LG + + I+ I+ GG+ A G L +
Sbjct: 2 SSGSSGRMVGIRKTAGEHLGVTFRVE-----------GGELVIARILHGGMVAQQGLLHV 50
Query: 213 GDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
GD I VNG+ V L ++LKI P
Sbjct: 51 GDIIKEVNGQPVGS-DPRALQELLRNASGSVILKILSGP 88
Score = 34.3 bits (79), Expect = 0.010
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 30 GMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERG 71
G + EVNG + G+ + LR + + L + G G
Sbjct: 51 GDIIKEVNGQPV-GSDPRALQELLRNASGSVILKILSGPSSG 91
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 66.7 bits (163), Expect = 6e-14
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 14/94 (14%)
Query: 163 VVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
+ + + GF+I + + + + GG A +G L+ D +L +N
Sbjct: 19 ITIRRGKDGFGFTICCDS------------PVRVQAVDSGGPAERAG-LQQLDTVLQLNE 65
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEG 255
R V E + EI+L + P
Sbjct: 66 RPVEHWKCVELAHEIRSCPSEIILLVWRVSGPSS 99
Score = 65.9 bits (161), Expect = 1e-13
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 15/100 (15%)
Query: 250 DPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRL 309
DP +IT+ R + G I D V + ++SGG A+R G L
Sbjct: 10 DPENGEKLQITIRRGKDG-FGFTICC-------------DSPVRVQAVDSGGPAERAG-L 54
Query: 310 KVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
+ +L++N + E + +R +I L V +
Sbjct: 55 QQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRV 94
Score = 43.2 bits (102), Expect = 1e-05
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
+L++N + E + +R +I L V +
Sbjct: 56 QLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRV 94
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 69.4 bits (169), Expect = 7e-14
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 11/101 (10%)
Query: 163 VVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
+ K GF++ KPG FI + P A SG LR DRI+ VNG
Sbjct: 13 CTMKKGPSGYGFNLHSDKS---------KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNG 62
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQEITLI 262
+ H + V A+ E L + E F++ +I
Sbjct: 63 VCMEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVI 103
Score = 67.1 bits (163), Expect = 4e-13
Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 12/113 (10%)
Query: 262 IRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGM 321
+++ G ++ K+ G FI ++ A+ G L+ R++EVNG+
Sbjct: 15 MKKGPSGYGFNLHSD----------KSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGV 63
Query: 322 SLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQSMSS 374
+ G H + V+ +R G + L V E + ++ + +
Sbjct: 64 CMEGKQHGDVVSAIRAGGDETKLLVVDR-ETDEFFKKCRVIPSQEHLNGPLPV 115
Score = 44.8 bits (105), Expect = 2e-05
Identities = 15/113 (13%), Positives = 33/113 (29%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRASTSEGSRSVTQ 88
R++EVNG+ + G H + V+ +R G + L V ++
Sbjct: 53 AQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGP 112
Query: 89 SMSSLDREDLDTDVFKQGQWSTVVTAHQRLDTGYGLPSNSTVAAHISSSLKPS 141
++ + ++ + + + S S K
Sbjct: 113 LPVPFTNGEIQKENSREALAEAALESPRPALVRSASSDTSEELNSQDSPPKQD 165
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 65.5 bits (160), Expect = 1e-13
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 19/98 (19%)
Query: 163 VVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
+ +P+ GF+I + + + + GG A +G L+ D +L +N
Sbjct: 7 ITIPRGKDGFGFTICCDS------------PVRVQAVDSGGPAERAG-LQQLDTVLQLNE 53
Query: 222 RDVSKVTHEEAVLALLEPCPEILLKI-----QHDPHPE 254
R V E + EI+L + Q P P+
Sbjct: 54 RPVEHWKCVELAHEIRSCPSEIILLVWRMVPQVKPGPD 91
Score = 64.7 bits (158), Expect = 2e-13
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 257 QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
++IT+ R + G I D V + ++SGG A+R G L+ +L
Sbjct: 5 RQITIPRGKDG-FGFTICC-------------DSPVRVQAVDSGGPAERAG-LQQLDTVL 49
Query: 317 EVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 349
++N + E + +R +I L V +
Sbjct: 50 QLNERPVEHWKCVELAHEIRSCPSEIILLVWRM 82
Score = 43.1 bits (102), Expect = 8e-06
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKG 67
+L++N + E + +R +I L V +
Sbjct: 44 QLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRM 82
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 65.6 bits (160), Expect = 2e-13
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 15/100 (15%)
Query: 150 SPSVRSSSLFLQDVVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSG 208
S S + + G LGF++ G T + + + P A+L+G
Sbjct: 6 SGSASKRWSPPRGIHFTVEEGDLGFTLRGNT------------PVQVHFLDPHCSASLAG 53
Query: 209 KLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQ 248
+ GD I+++ G D +T E + LL+ ++++
Sbjct: 54 -AKEGDYIVSIQGVDCKWLTVSEVM-KLLKSFGGEEVEMK 91
Score = 57.1 bits (138), Expect = 1e-10
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 16/89 (17%)
Query: 259 ITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEV 318
I +EG+ LG ++G + V + ++ +A G K G ++ +
Sbjct: 19 IHFTVEEGD-LGFTLRG-------------NTPVQVHFLDPHCSASLAG-AKEGDYIVSI 63
Query: 319 NGMSLLGASHQEAVNTLRYSG-HQISLTV 346
G+ + E + L+ G ++ + V
Sbjct: 64 QGVDCKWLTVSEVMKLLKSFGGEEVEMKV 92
Score = 38.6 bits (90), Expect = 5e-04
Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSG-HQISLTV 64
G ++ + G+ + E + L+ G ++ + V
Sbjct: 56 EGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKV 92
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 64.4 bits (157), Expect = 2e-13
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 248 QHDPHPEGFQEITLIRQEGEK--LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKR 305
H G LIR+ + LG ++ G I + GG A+R
Sbjct: 3 HHHLETMGNVTTVLIRRPDLRYQLGFSVQNG----------------IICSLMRGGIAER 46
Query: 306 DGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
G ++VG R++E+NG S++ H++ V+ L + +I +
Sbjct: 47 GG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKT 86
Score = 59.0 bits (143), Expect = 2e-11
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
Query: 168 SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKV 227
LGFS+ G I ++ GG+A G +R+G RI+ +NG+ V
Sbjct: 23 RYQLGFSVQNG---------------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVAT 66
Query: 228 THEEAVLALLEPCPEILLKI 247
HE+ V L EI +K
Sbjct: 67 PHEKIVHILSNAVGEIHMKT 86
Score = 45.1 bits (107), Expect = 1e-06
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
VG R++E+NG S++ H++ V+ L + +I +
Sbjct: 51 VGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKT 86
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 65.1 bits (158), Expect = 3e-13
Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 14/114 (12%)
Query: 150 SPSVRSSSLFLQDVVLPKSG----PLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAA 205
S + Q + + KS GFS+ + ++++ + G+A+
Sbjct: 6 SGEIEICPKVTQSIHIEKSDTAADTYGFSLSSVEED-------GIRRLYVNSVKETGLAS 58
Query: 206 LSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQEI 259
G L+ GD IL +N R + L + P + L ++ P E E
Sbjct: 59 KKG-LKAGDEILEINNRAADALNSSMLKDFLSQ--PSLGLLVRTYPELEEGVES 109
Score = 49.3 bits (117), Expect = 1e-07
Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 11/104 (10%)
Query: 253 PEGFQEITLIRQEG--EKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLK 310
P+ Q I + + + + G + + +++ + G A + G LK
Sbjct: 13 PKVTQSIHIEKSDTAADTYGFSLSSVE--------EDGIRRLYVNSVKETGLASKKG-LK 63
Query: 311 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGD 354
G +LE+N + + + L + + E G
Sbjct: 64 AGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYPELEEGV 107
Score = 29.2 bits (65), Expect = 1.1
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGD 72
G +LE+N + + + L + + E G
Sbjct: 64 AGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYPELEEGV 107
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 64.1 bits (155), Expect = 7e-13
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 163 VVLPKS--GPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAA-LSGKLRMGDRILAV 219
+ +P + GFS+ + S + + + + ++ + GDRIL +
Sbjct: 19 ISMPATTECRRGFSVTVESASSN-----YATTVQVKEVNRMHISPNNRNAIHPGDRILEI 73
Query: 220 NGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
NG V + EE A+ + + L I+HDP P+
Sbjct: 74 NGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVPQ 108
Score = 42.5 bits (99), Expect = 3e-05
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 248 QHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGG-AAKRD 306
+ +TLI + G + V + ++N +
Sbjct: 5 SSGVQDQLPYSVTLISMPATTEC---RRGFSVTVESASSNYATTVQVKEVNRMHISPNNR 61
Query: 307 GRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
+ G R+LE+NG + +E + ++ + + L +
Sbjct: 62 NAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLI 101
Score = 33.6 bits (76), Expect = 0.037
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G R+LE+NG + +E + ++ + + L +
Sbjct: 66 PGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLI 101
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 63.1 bits (153), Expect = 8e-13
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 168 SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKV 227
+ GFS+ + ++++ + G+A+ G L+ GD IL +N R +
Sbjct: 19 ADTYGFSLSSVEED-------GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADAL 70
Query: 228 THEEAVLALLEPCPEILLKIQHDP 251
L + P + L ++ P
Sbjct: 71 NSSMLKDFLSQ--PSLGLLVRTYP 92
Score = 42.3 bits (99), Expect = 2e-05
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 286 DKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLT 345
+ +++ + G A + G LK G +LE+N + + + L S + L
Sbjct: 31 EDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFL--SQPSLGLL 87
Query: 346 V 346
V
Sbjct: 88 V 88
Score = 26.1 bits (57), Expect = 9.5
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 64
G +LE+N + + + L S + L V
Sbjct: 55 AGDEILEINNRAADALNSSMLKDFL--SQPSLGLLV 88
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 60.8 bits (148), Expect = 5e-12
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 13/72 (18%)
Query: 163 VVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
V + K GF+I G + IV + S L+ GD I+ VN
Sbjct: 7 VHIVKGPMGFGFTIADS---------PGGGGQRVKQIVD---SPRSRGLKEGDLIVEVNK 54
Query: 222 RDVSKVTHEEAV 233
++V +TH + V
Sbjct: 55 KNVQALTHNQVV 66
Score = 58.4 bits (142), Expect = 3e-11
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 16/96 (16%)
Query: 258 EITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLE 317
+ +++ G I G + +I R LK G ++E
Sbjct: 6 TVHIVKGPMG-FGFTIADS----------PGGGGQRVKQIVDSP---RSRGLKEGDLIVE 51
Query: 318 VNGMSLLGASHQEAVNTLRYS--GHQISLTVCKGFE 351
VN ++ +H + V+ L S G +++L V +
Sbjct: 52 VNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQTR 87
Score = 40.7 bits (96), Expect = 5e-05
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLRYS--GHQISLTVCKGFE 69
G ++EVN ++ +H + V+ L S G +++L V +
Sbjct: 45 EGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQTR 87
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 59.7 bits (145), Expect = 1e-11
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 19/95 (20%)
Query: 163 VVLPK-SGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
+ + K + GF+I G + I+ L GD I+ +N
Sbjct: 14 LTIVKGAQGFGFTIADSPT-----------GQRVKQILDIQGCP---GLCEGDLIVEINQ 59
Query: 222 RDVSKVTHEEAVLALLEPCP---EILLKIQHDPHP 253
++V ++H E V +L+ CP E L I P
Sbjct: 60 QNVQNLSHTEVV-DILKDCPIGSETSLIIHRGSGP 93
Score = 54.3 bits (131), Expect = 1e-09
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 18/103 (17%)
Query: 249 HDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGR 308
+T+++ + G I GQR + +I
Sbjct: 4 GSSGQAELMTLTIVKGA-QGFGFTIADSPTGQR------------VKQILDIQ---GCPG 47
Query: 309 LKVGMRLLEVNGMSLLGASHQEAVNTLR--YSGHQISLTVCKG 349
L G ++E+N ++ SH E V+ L+ G + SL + +G
Sbjct: 48 LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG 90
Score = 39.7 bits (93), Expect = 1e-04
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLR--YSGHQISLTVCKG 67
G ++E+N ++ SH E V+ L+ G + SL + +G
Sbjct: 50 EGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG 90
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 62.0 bits (151), Expect = 1e-10
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 186 FGQHKP-GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEIL 244
G F+S ++P AA +G ++ GD I ++NG+ +S A + + ++
Sbjct: 280 MKVDAQRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLT 338
Query: 245 LKIQHDPHPEGFQEITLIRQEGEKL-GMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAA 303
L + D + L + ++ I G+ G + K D+GV + + +G A
Sbjct: 339 LGLLRDGKQVNVN-LELQQSSQNQVDSSSIFNGIEGAEMSNKGK-DQGVVVNNVKTGTPA 396
Query: 304 KRDGRLKVGMRLLEVNG 320
+ G LK G ++ N
Sbjct: 397 AQIG-LKKGDVIIGANQ 412
Score = 38.5 bits (90), Expect = 0.004
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQ 248
G+ ++++ G AA G L+ GD I+ N + V + VL + L IQ
Sbjct: 384 GVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKNIAELRKVLD--SKPSVLALNIQ 437
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 60.0 bits (146), Expect = 5e-10
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 186 FGQHKP-GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEIL 244
F G F+S ++PG +A +G ++ GD I ++NG+ ++ + +A EP ++
Sbjct: 257 FNLDVQRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVK 315
Query: 245 LKIQHDPHPEGFQEITLIRQE-----GEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINS 299
L + + P + +TL E + ++G L +G+ I ++
Sbjct: 316 LGLLRNGKPLEVE-VTLDTSTSSSASAEMITPALEGATLSDGQ--LKDGGKGIKIDEVVK 372
Query: 300 GGAAKRDGRLKVGMRLLEVNG 320
G A + G L+ ++ VN
Sbjct: 373 GSPAAQAG-LQKDDVIIGVNR 392
Score = 39.2 bits (92), Expect = 0.002
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQ 248
GI I +V G AA +G L+ D I+ VN V+ + VLA I L+I
Sbjct: 364 GIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSIAEMRKVLA--AKPAIIALQIV 417
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 54.8 bits (132), Expect = 9e-10
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 19/96 (19%)
Query: 163 VVLPKSGP-LGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNG 221
+ L K GF+I P GQ I + G L+ GD I +
Sbjct: 16 IPLIKGPKGFGFAIADS------PTGQKVKMI-LDSQWCQG-------LQKGDIIKEIYH 61
Query: 222 RDVSKVTHEEAVLALLEPCP---EILLKIQHDPHPE 254
++V +TH + V +L+ P ++ L I P
Sbjct: 62 QNVQNLTHLQVV-EVLKQFPVGADVPLLILRGGPPS 96
Score = 51.4 bits (123), Expect = 2e-08
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 21/116 (18%)
Query: 258 EITLIRQEGEK-LGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLL 316
I LI+ G K G I GQ+ + ++ L+ G +
Sbjct: 15 TIPLIK--GPKGFGFAIADSPTGQK---------------VKMILDSQWCQGLQKGDIIK 57
Query: 317 EVNGMSLLGASHQEAVNTLR--YSGHQISLTVCKGFERGDIERRASTSEGSRSVTQ 370
E+ ++ +H + V L+ G + L + +G + A GS +T+
Sbjct: 58 EIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRG-GPPSPTKTAKMGSGSGQITK 112
Score = 40.6 bits (95), Expect = 1e-04
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 29 VGMRLLEVNGMSLLGASHQEAVNTLR--YSGHQISLTVCKGFERGDIERRASTSEGSRSV 86
G + E+ ++ +H + V L+ G + L + +G + A GS +
Sbjct: 52 KGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRG-GPPSPTKTAKMGSGSGQI 110
Query: 87 TQ 88
T+
Sbjct: 111 TK 112
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 56.9 bits (138), Expect = 5e-09
Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 18/182 (9%)
Query: 186 FGQHKP--GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEI 243
G + G +S + P A L+G L+ GD I +N +++ T + ++LL +
Sbjct: 275 MGYPEDFQGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQATQVKTTISLLRVGSTV 333
Query: 244 LLKIQHDPHPEGFQEITL-IRQEGEKLGMHIKGGLRGQRGNPLDK------NDEGVFITK 296
+ ++ D P + + E+ L G ++ N GV +
Sbjct: 334 KIIVERDNKPLTLS-AVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPHGNVIGVQVVG 392
Query: 297 INSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIE 356
+ A R G ++ G ++ N + + + ++ + V RG
Sbjct: 393 ASENSAGWRAG-IRPGDIIISANKKPV--TDVKSLQTIAQEKKKELLVQV----LRGPGS 445
Query: 357 RR 358
Sbjct: 446 MY 447
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 2e-08
Identities = 62/338 (18%), Positives = 97/338 (28%), Gaps = 128/338 (37%)
Query: 11 TGEQAGVILAAGEVVI---------HPVGMRLLEVNGMSLLGASHQEA--VNTLRYSGHQ 59
TG G++ A I + + V + +G EA +L S +
Sbjct: 271 TGHSQGLVTAV---AIAETDSWESFFVSVRKAITV--LFFIGVRCYEAYPNTSLPPSILE 325
Query: 60 ISLTVCKGFERGDIERRASTSEGSRSVTQSM---SSLDREDLDTDVFKQGQWSTVVTAHQ 116
SL E EG S M S+L +E + V K +H
Sbjct: 326 DSL------ENN---------EGVPS---PMLSISNLTQEQVQDYVNK-------TNSH- 359
Query: 117 RLDTGYGLPSNSTVAAHISSSLKPSILVTYNFFSPSVRSSSLFLQDVVLPKSGP---L-G 172
LP+ + SL N +++V+ SGP L G
Sbjct: 360 -------LPAGK----QVEISL-------VN--GA---------KNLVV--SGPPQSLYG 388
Query: 173 FSII-------GGTDHSCIPFGQHKPGI----------FISHIVPGGVAALSGKLRMGDR 215
++ G D S IPF + K F SH++ ++ L +
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 216 I-----LAV------NGRDV----SKVTHEEAVLALLEPC--PEIL-LKIQH--DPHPEG 255
+ + +G D+ ++ + P K H D P G
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG 508
Query: 256 FQEITLIRQEGEKLGMHIKGGLRGQR---GNPLDKNDE 290
+ L K G G R LD N +
Sbjct: 509 ASGLG-------VLTHRNKDG-TGVRVIVAGTLDINPD 538
Score = 52.7 bits (126), Expect = 2e-07
Identities = 42/254 (16%), Positives = 80/254 (31%), Gaps = 89/254 (35%)
Query: 26 IHPVGMRLLEVNGMSLLGASH------QEA----VNTLRYSGHQI------SLTVCKGFE 69
GM GM L S A +T +S I +LT+ G E
Sbjct: 1626 SQEQGM------GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 70 RGDIER-------RASTSEGS-------RSVTQSMSSL----DREDLD-TDVFKQ---GQ 107
+G R + +G + + + +S ++ L T F Q
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ-FTQPALTL 1738
Query: 108 WSTVVTAHQRLDTGYGLPSNSTVAAHISSSL---KPSILVTYNFFSPSVRSSSLFLQDVV 164
A + L + +P+++T A H SL + L + + + ++ +V
Sbjct: 1739 ME--KAAFEDLKSKGLIPADATFAGH---SLGEY--AALASL--------ADVMSIESLV 1783
Query: 165 LPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDV 224
++ G+ + VP R ++A+N V
Sbjct: 1784 ---------EVV------------FYRGMTMQVAVPRDELG-----RSNYGMIAINPGRV 1817
Query: 225 SKVTHEEAVLALLE 238
+ +EA+ ++E
Sbjct: 1818 AASFSQEALQYVVE 1831
Score = 38.1 bits (88), Expect = 0.007
Identities = 47/331 (14%), Positives = 82/331 (24%), Gaps = 137/331 (41%)
Query: 150 SPSVRSSSLFLQ-DVVLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSG 208
S + + ++ + D + GFSI+ + P H GG
Sbjct: 1639 SKAAQD--VWNRADNHFKDT--YGFSILD--------IVINNPVNLTIH--FGG--EKGK 1682
Query: 209 KLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPEGFQEIT-------- 260
++R + K+ E+ + E + +G T
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR-----SEKGLLSATQFTQPALT 1737
Query: 261 --------LIRQEGEK----------LG-----------MHIKGGLR--GQRGNPLDKND 289
++ +G LG M I+ + RG +
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQV-- 1795
Query: 290 EGVFITKINSGGAAKRDG--RLKVGMRLLEVNGMSLLGASHQ----------------EA 331
A RD R GM + ++ + E
Sbjct: 1796 ------------AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 332 VNTLRY--SGHQISLTVCKGFERGDIERRASTSEGSRSVTQSMSSLDREDLD--TDVFKQ 387
VN Y Q V G D LD T+V
Sbjct: 1844 VN---YNVENQQY---VAAG--------------------------DLRALDTVTNVLNF 1871
Query: 388 EEEMKKELVEWEKEEQEERKENLELDEVREK 418
+ K +++E +++L L+EV
Sbjct: 1872 IKLQKIDIIEL--------QKSLSLEEVEGH 1894
Score = 27.7 bits (61), Expect = 9.1
Identities = 42/189 (22%), Positives = 62/189 (32%), Gaps = 66/189 (34%)
Query: 137 SLKPSILV-TYNFFSPSVRSSSLFLQDVVLPKSGP-----------LGFSIIGGTDHSCI 184
SL+ +LV T +FF S F + + P G L +G
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQ-FNKILPEPTEGFAADDEPTTPAELVGKFLG------- 66
Query: 185 PFGQHKPGIFISHIV-PGGVAALSGKLRMG-----DRILAVNGRDVSKVTHEEAVLA-LL 237
++S +V P V L + + L G D+ H A+ A LL
Sbjct: 67 ---------YVSSLVEPSKVGQFDQVLNLCLTEFENCYL--EGNDI----H--ALAAKLL 109
Query: 238 EPCPEILLKIQH-------------DPHPEGFQEITLIR--QEGE-KLGMHIKGGLRGQR 281
+ L+K + P + L R EG +L + I G GQ
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKK-SNSALFRAVGEGNAQL-VAIFG---GQ- 163
Query: 282 GNPLDKNDE 290
GN D +E
Sbjct: 164 GNTDDYFEE 172
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 48.2 bits (114), Expect = 1e-06
Identities = 22/169 (13%), Positives = 51/169 (30%), Gaps = 5/169 (2%)
Query: 178 GTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALL 237
G+ S G G + + +G D I+++NG ++K L
Sbjct: 3 GSSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKA 62
Query: 238 EPCPEILLKIQHDPHPEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKI 297
+ + I + +E ++ G G+ + + N+ + ++
Sbjct: 63 NVEKPVKMLI-YSSKTLELRETSVTPSNLW--GGQGLLGVSIRFCSFDGANENVWHVLEV 119
Query: 298 NSGGAAKRDGRLKVGMRLLEVNGMSLLGASHQEAVNTLRYSGHQISLTV 346
S A G ++ + + + T + + L V
Sbjct: 120 ESNSPAALAGLRPHSDYIIGADTVMNESEDLFSLIET--HEAKPLKLYV 166
Score = 39.3 bits (91), Expect = 0.001
Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 11/120 (9%)
Query: 164 VLPKSGPLGFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRD 223
V P + G ++G + C G ++ + + AAL+G D I+ +
Sbjct: 85 VTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTV- 143
Query: 224 VSKVTHEEAVLALLEPCP--EILLKIQHDPHPEGFQEITLI--RQEGEK--LGMHIKGGL 277
+ E + +L+E + L + ++ + +E+ + G + LG I G
Sbjct: 144 ---MNESEDLFSLIETHEAKPLKLYV-YNTDTDNCREVIITPNSAWGGEGSLGCGIGYGY 199
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 43.3 bits (102), Expect = 2e-05
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 184 IPFGQHKP-GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPE 242
+ F H+P G+ I +VPG A+ L G I ++NG S +T A L +
Sbjct: 17 LYFQGHQPDGVQIDSVVPGSPAS--KVLTPGLVIESINGMPTSNLTTYSAALKTISVGEV 74
Query: 243 ILLKIQ 248
I +
Sbjct: 75 INITTD 80
Score = 36.0 bits (83), Expect = 0.005
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 289 DEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH-QEAVNTLRYSGHQISLTVC 347
+GV I + G A L G+ + +NGM + A+ T+ G I++T
Sbjct: 24 PDGVQIDSVVPGSPA--SKVLTPGLVIESINGMPTSNLTTYSAALKTIS-VGEVINITT- 79
Query: 348 KGFERGDIE 356
++G
Sbjct: 80 ---DQGTFH 85
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 40.7 bits (96), Expect = 6e-05
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
G+++ ++P AA G+L GDRI A++G+ ++ + + + + + D
Sbjct: 6 GVYVMSVLPNMPAA--GRLEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRVTFIRDR 63
Query: 252 HPEGFQEITLIRQEGEK 268
E+ L
Sbjct: 64 KQHEA-ELVLKPFPHHP 79
Score = 31.5 bits (72), Expect = 0.13
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 287 KNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH-QEAVNTLRYSGHQISLT 345
+GV++ + A GRL+ G R+ ++G + + V + +G ++ +T
Sbjct: 2 NEAKGVYVMSVLPNMPAA--GRLEAGDRIAAIDGQPINTSEQIVSYVREKQ-AGDRVRVT 58
Query: 346 V 346
Sbjct: 59 F 59
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 1e-04
Identities = 53/427 (12%), Positives = 120/427 (28%), Gaps = 118/427 (27%)
Query: 65 CKGFERGDIERRASTSEGSRSVTQSMSSLDREDLDTDVFKQGQWSTVVTAHQR-----LD 119
CK + D+ + + E + S ++ Q V Q+ L
Sbjct: 35 CKDVQ--DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV----QKFVEEVLR 88
Query: 120 TGYGLPSNSTVAAHISSSLKPSILV-----TYN---FFSP----------SVRSSSLFLQ 161
Y + S+ + + YN F+ +R + L L+
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 162 D---VVLPKSGPLGFSIIGGT--------DHS---CIPFG--------QHKPGIFI---- 195
V++ G LG G T + + F + P +
Sbjct: 149 PAKNVLI--DGVLGS---GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 196 ---SHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPH 252
I P + + RI ++ + + LL +LL +Q+
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----VLLNVQNAKA 258
Query: 253 PEGF----------QEITLIRQEGEKLGMHIKGGLRGQRGNPLDKND-EGVFITKINSGG 301
F + + HI L ++ + + + ++
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD---HHSMTLTPDEVKSLLLKYLDC-- 313
Query: 302 AAKRDGRLKVGMRLLEVN--GMSLLGASHQEAVNTLRYSGHQISLTVCKGFERGDIERRA 359
R L +L N +S++ S ++ + T ++ + ++
Sbjct: 314 ---RPQDLPR--EVLTTNPRRLSIIAESIRDGLATWDN------------WKHVNCDKLT 356
Query: 360 STSEGSRSVTQSMSSLDREDL-----DTDVFKQEEEMKKELVE--WEKEEQEERKENLEL 412
+ E S++ L+ + VF + L+ W + + + +
Sbjct: 357 TIIE------SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD--VMVVV 408
Query: 413 DEVREKS 419
+++ + S
Sbjct: 409 NKLHKYS 415
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 42.5 bits (101), Expect = 1e-04
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 186 FGQHKP-GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEIL 244
G + GI ++ + P G AA +G +++ D I++V+ + +A + P I
Sbjct: 238 GGIDQLQGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIP 296
Query: 245 LKIQHD 250
+ + D
Sbjct: 297 VVVMRD 302
Score = 28.7 bits (65), Expect = 3.4
Identities = 6/34 (17%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 287 KNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNG 320
+G+ + +++ G A G ++V ++ V+
Sbjct: 241 DQLQGIVVNEVSPDGPAANAG-IQVNDLIISVDN 273
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 39.2 bits (92), Expect = 2e-04
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
GI+ S +V A GK+ +GD+I++ +G++ ++ + ++ LKI+ +
Sbjct: 2 GIYASSVVENMPAK--GKIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTLKIERE- 58
Query: 252 HPEGFQEITLIRQEGEK 268
E +TL + E
Sbjct: 59 EKEKRVTLTLKQFPDEP 75
Score = 28.8 bits (65), Expect = 0.99
Identities = 10/57 (17%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 291 GVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH-QEAVNTLRYSGHQISLTV 346
G++ + + AK G+++VG +++ +G + A + +++ + +G +++L +
Sbjct: 2 GIYASSVVENMPAK--GKIEVGDKIISADGKNYQSAEKLIDYISSKK-AGDKVTLKI 55
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 40.9 bits (95), Expect = 3e-04
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 378 EDLDTDVFKQEEEMK----KELVEWEK--EEQEER--KENLELDE 414
++LD E+E + K+L EW + EQ E+ N D+
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
Score = 38.6 bits (89), Expect = 0.002
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 383 DVFKQEEEMKKELVEWEKEEQEERKENLE--LDEVREKSTPEMPHYFQDAN 431
D QE E ++ E +++ +E + E REK+ ++ + Q +
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS 128
Score = 37.8 bits (87), Expect = 0.002
Identities = 8/60 (13%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 351 ERGDIERRASTSEGSRSVTQSMSSLDREDLDTDVFKQEEEMKKELVEWEKEEQEERKENL 410
+R ++ + S+ + + D E+ + +Q E+ K +K ++ ++
Sbjct: 96 KR--LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
Score = 35.9 bits (82), Expect = 0.011
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 377 REDLDTDVFKQEEEMKKELVEWEKEEQEERKE-NLELDEVREKS 419
RE+ + + + K EW ++ +++ +E N E EK+
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 38.8 bits (91), Expect = 3e-04
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDP 251
G+++ + AA L GD I ++G + + + + +H
Sbjct: 8 GVYVMSVKDDVPAA--DVLHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKINYKHGD 65
Query: 252 HPEGFQEITLIRQEGEKLGM 271
E +I L + +
Sbjct: 66 KNEQA-DIKLTAIDKKGTPG 84
Score = 29.6 bits (67), Expect = 0.50
Identities = 8/58 (13%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 290 EGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH-QEAVNTLRYSGHQISLTV 346
+GV++ + A L G + E++G + + + +++ + G + +
Sbjct: 7 DGVYVMSVKDDVPAA--DVLHAGDLITEIDGNAFKSSQEFIDYIHSKK-VGDTVKINY 61
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 40.7 bits (96), Expect = 7e-04
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 186 FGQHKP-GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEIL 244
F G F+S ++PG +A +G ++ GD I ++NG+ ++ + +A EP ++
Sbjct: 257 FNLDVQRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVK 315
Query: 245 LKIQHDPHPEGFQEITLIRQEGEK 268
L + + P + +TL
Sbjct: 316 LGLLRNGKPLEVE-VTLDTSTSSL 338
Score = 28.0 bits (63), Expect = 6.1
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 287 KNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNG 320
G F++++ G + + G +K G + +NG
Sbjct: 260 DVQRGAFVSEVLPGSGSAKAG-VKAGDIITSLNG 292
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 38.0 bits (88), Expect = 8e-04
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHD 250
G +S + G L+ GD +A+NG D++ + + E+ L ++ D
Sbjct: 38 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERD 95
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 37.7 bits (88), Expect = 0.001
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHD 250
G+ I ++ G A +G LR GD ILA+ + V E V + ++ ++I+
Sbjct: 36 GVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNA---EDVYEAVRTQSQLAVQIRRG 90
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 37.1 bits (86), Expect = 0.001
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 195 ISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
+ ++ P A+ +G L+ GDRI+ V+G+ +++ ++ P + L+I+ P
Sbjct: 8 LENVQPNSAASXAG-LQAGDRIVXVDGQPLTQWVTFVMLVR-DNPGXSLALEIERQGSP- 64
Query: 255 GFQEITLI----RQEGEKLGM 271
+TLI G +G
Sbjct: 65 --LSLTLIPESXPGNGXAIGF 83
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 36.1 bits (83), Expect = 0.003
Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 195 ISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHDPHPE 254
+ I +AA + + G + AV+G + L + + +
Sbjct: 6 VGEIAANSIAAEAQ-IAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPF-GSD 63
Query: 255 GFQEITL 261
+++ L
Sbjct: 64 QRRDVKL 70
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 38.8 bits (89), Expect = 0.003
Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 183 CIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPE 242
+ G+ + ++ A +G L GD+I+A++ ++ + + L P
Sbjct: 488 GAKYKASPQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATEQSVKRI-LERYIPGDT 545
Query: 243 ILLKIQHD 250
+ +
Sbjct: 546 VTIHAFRR 553
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 38.2 bits (88), Expect = 0.005
Identities = 10/88 (11%), Positives = 25/88 (28%), Gaps = 9/88 (10%)
Query: 186 FGQHKPGIFISHIVPGGV--------AALSGKLRMGDRILAVNGRDVSKVTHEEAVLALL 237
F ++ G G G I ++G V ++ VL+
Sbjct: 743 FKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGSNIYRVLS-E 801
Query: 238 EPCPEILLKIQHDPHPEGFQEITLIRQE 265
+ +++ + I ++ +
Sbjct: 802 KAGTSARIRLSGKGGDKRDLMIDILDDD 829
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 37.6 bits (88), Expect = 0.006
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 186 FGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILL 245
F + G+ I ++ G A +G LR GD ILA+ + V V + ++ +
Sbjct: 251 FPDVQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAE---DVYEAVRTQSQLAV 306
Query: 246 KIQHD 250
+I+
Sbjct: 307 QIRRG 311
Score = 29.1 bits (66), Expect = 2.7
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 279 GQRGNPLDKNDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH-QEAVNTLRY 337
R GV I K+ G A R G L+ G +L + + A EAV T
Sbjct: 245 QLREPSFPDVQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAEDVYEAVRT--- 300
Query: 338 SGHQISLTV 346
Q+++ +
Sbjct: 301 -QSQLAVQI 308
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 37.6 bits (88), Expect = 0.007
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 210 LRMGDRILAVNGRDVSKVTHEEAVLALL--EPCPEILLKIQHDPHPEGFQEITLIRQE 265
R GD I+ V+G V ++ + LL E ++ + + P + + L RQ+
Sbjct: 117 ARAGDVIVTVDGTAVKGMSLYDVS-DLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQK 173
Score = 29.9 bits (68), Expect = 1.8
Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 15/103 (14%)
Query: 250 DPH-----PEGFQEITLIRQEGEKLGMHIKGGLRGQRGNPLDKNDEGVFITKINSGGAAK 304
DP P + G G+ ++ G G + V +T GG A+
Sbjct: 62 DPFTRFLEPSRLAALR-RGTAGSVTGVGLEITYDGGSGKDV------VVLTPA-PGGPAE 113
Query: 305 RDGRLKVGMRLLEVNGMSLLGASHQEAVNTLR-YSGHQISLTV 346
+ G + G ++ V+G ++ G S + + L+ + Q+ + +
Sbjct: 114 KAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVL 155
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 35.4 bits (82), Expect = 0.007
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVT 228
GI++ + P + G ++ GD I+ VNGR + +
Sbjct: 36 GIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVDSS 71
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 34.8 bits (80), Expect = 0.008
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQ 248
G +S + G L+ GD +A+NG D++ + + E+ L ++
Sbjct: 20 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVE 75
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 36.5 bits (85), Expect = 0.014
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEP 239
G I +V GG AA +G + G + V+ R ++ A + P
Sbjct: 243 GAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSADALVAAVRSKAP 289
Score = 27.6 bits (62), Expect = 7.4
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 288 NDEGVFITKINSGGAAKRDGRLKVGMRLLEVNGMSLLGASH-QEAVNTLRYSGHQISLTV 346
+ G I ++ +GGAA G + G+ + +V+ + A AV + G ++LT
Sbjct: 240 DTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSADALVAAVRSKA-PGATVALTF 297
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 36.1 bits (84), Expect = 0.017
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVT 228
G +I ++P A G L+ D I+++NG+ V
Sbjct: 255 GAYIIEVIPDTPAEAGG-LKENDVIISINGQSVVSAN 290
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 36.1 bits (84), Expect = 0.019
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 192 GIFISHIVPGGVAALSG----------KLRMGDRILAVNGRDVSKVTHEEAVLALLEPCP 241
G+ + P G A +G +L +GD I +VNG VS + +L +
Sbjct: 252 GVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILDQCKVGD 311
Query: 242 EILLKIQHDPHPEGFQEITLIRQEGEK 268
E+ +++ H E +TL + E
Sbjct: 312 EVTVEVLRGDHKEKIS-VTLEPKPDES 337
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 34.1 bits (79), Expect = 0.025
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 192 GIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEEAVLALLEPCPEILLKIQHD 250
G+ + + A G L D I V+ ++++ T ++ L I + +
Sbjct: 58 GVIVRSVQSNMPAN--GHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYYRN 114
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 34.8 bits (80), Expect = 0.051
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 172 GFSIIGGTDHSCIPFGQHKPGIFISHIVPGGVAALSGKLRMGDRILAVNGRDVSKVTHEE 231
+++ + IS++VPG A +G L+ G I+ +NG ++K E
Sbjct: 77 DYTLYK------VLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKVESE 129
Query: 232 AV 233
+
Sbjct: 130 LL 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein
complex; 1.50A {Escherichia coli} SCOP: b.68.4.1
c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Length = 415
Score = 29.8 bits (67), Expect = 2.0
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 306 DGRLKVGMRLLEVNGMS---LLGASHQEAVNTLRYSGHQIS 343
DG V +L++ G L S++ LRY+GH S
Sbjct: 88 DGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTAS 128
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA
repair, recombination, HOOK motif, replication; HET: DNA
CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Length = 112
Score = 27.8 bits (61), Expect = 2.8
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 377 REDLDTDVFKQEEEMKKELVEWEKEEQEERKENLELDEVREKSTP 421
RE+L + K L + + E +E +D ++ TP
Sbjct: 62 REELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIKRLTP 106
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 29.3 bits (66), Expect = 3.3
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 354 DIERRASTSEGSRSVTQSMSSLDRE--DLDTDVFKQEEEMKKELVEWEKEEQEERKENLE 411
D+ER + E +++ T + SL E L ++ + + E K +K + E + E
Sbjct: 968 DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027
Query: 412 LDEVREK 418
L E
Sbjct: 1028 LKEQNTL 1034
Score = 28.9 bits (65), Expect = 4.6
Identities = 5/42 (11%), Positives = 19/42 (45%)
Query: 377 REDLDTDVFKQEEEMKKELVEWEKEEQEERKENLELDEVREK 418
+L+ + E+++ ++ E+E + + ++E+
Sbjct: 951 MNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix,
PSI, protein structure INI midwest center for structural
genomics; 1.60A {Staphylococcus aureus subsp} SCOP:
a.24.27.1
Length = 199
Score = 28.3 bits (62), Expect = 3.8
Identities = 13/63 (20%), Positives = 28/63 (44%)
Query: 356 ERRASTSEGSRSVTQSMSSLDREDLDTDVFKQEEEMKKELVEWEKEEQEERKENLELDEV 415
E++ +E S ++ +DL + + +E +KE +K EQ+ +K +D +
Sbjct: 47 EKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNI 106
Query: 416 REK 418
Sbjct: 107 DND 109
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus
norvegicus}
Length = 96
Score = 26.8 bits (59), Expect = 4.6
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 386 KQEEEMKKELVEWEKEEQEERKENLELDEVREKSTPEMPHYFQDAN 431
+EE + +EL + EK + + ++ E+ E Y ++ +
Sbjct: 18 LEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYS 63
Score = 26.4 bits (58), Expect = 7.8
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 387 QEEEMKKELVEWEKEEQEERKENLELDEVREKSTPEM 423
E++++EL E EE+ +E ++++ R+ +
Sbjct: 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENL 41
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 28.3 bits (64), Expect = 5.3
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 9 PWT--GEQAGVILAAGEVVIHPVGMRLLEVNGMSLLGA 44
P+ E AGV+ +A E G R V + +G
Sbjct: 79 PFVPGIETAGVVRSAPEGSGIKPGDR---VMAFNFIGG 113
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG,
GFT structural G PSI-2, protein structure initiative;
NMR {Artificial gene}
Length = 110
Score = 26.6 bits (58), Expect = 8.1
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 362 SEGSRSVTQSMSSLDREDLDTDVFKQEEEMKKELVEWEKEEQEER-----KENLELDEVR 416
S + + ++ ++ +L+ K E+E+KK L E+ KE Q + + ELD+ +
Sbjct: 9 SNDKKLIEEARKMAEKANLELRTVKTEDELKKYLEEFRKESQNIKVLILVSNDEELDKAK 68
Query: 417 E 417
E
Sbjct: 69 E 69
>2v0p_A TAP42, type 2A phosphatase-associated protein 42; phosphorylation,
signal transduction inhibitor, hydrolase in; 1.80A
{Saccharomyces cerevisiae}
Length = 234
Score = 27.5 bits (60), Expect = 8.2
Identities = 8/70 (11%), Positives = 28/70 (40%)
Query: 348 KGFERGDIERRASTSEGSRSVTQSMSSLDREDLDTDVFKQEEEMKKELVEWEKEEQEERK 407
F+ + + ++ + + ++F++ +E+ +L E E + +
Sbjct: 133 GNFKDRYNPQLSELYAQPKNNKDLSGAQLKRKEKIELFQRNKEISTKLHCLELELKNNDE 192
Query: 408 ENLELDEVRE 417
++ + +RE
Sbjct: 193 DHDHDELLRE 202
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB
component, phosphotransferase, sugar transport, STRU
genomics; HET: PGE; 1.65A {Streptococcus pyogenes
serotype M1}
Length = 163
Score = 27.0 bits (60), Expect = 8.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 289 DEGVFITKINSGGAAKRDGRLKV 311
+ GV IT+IN G K D ++ +
Sbjct: 96 EGGVPITEINIGNIHKTDDKVAI 118
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 27.6 bits (62), Expect = 8.7
Identities = 6/37 (16%), Positives = 17/37 (45%)
Query: 366 RSVTQSMSSLDREDLDTDVFKQEEEMKKELVEWEKEE 402
++V + D + + + E+ + L+ W K++
Sbjct: 501 QNVAKEGVKFDESEKTKESREAIEKEFEPLLNWMKDK 537
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
2.21A {Homo sapiens}
Length = 591
Score = 27.9 bits (62), Expect = 9.0
Identities = 5/57 (8%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 351 ERGDIERRASTSEGSRSVTQSMSSLDREDLDTDVFKQEEEMKKELVEWEKEEQEERK 407
+ + + R+V + + VF +++ + + + + E
Sbjct: 96 SSSGKDSVSGITSYVRTVLCE-GGVPQRP---VVFVTRKKLVNAIQQKLSKLKGEPG 148
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal
tail of CHMP4B, ESCRT-III, CHMPS, protein-transport
protein complex, BROX; 3.80A {Homo sapiens}
Length = 104
Score = 26.1 bits (57), Expect = 9.4
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 356 ERRASTSEGSRSVTQSMSSLDREDLDTDVFKQEEEMKKELVEWEKEEQEERKENLELDEV 415
+++ E S ++++ + + D E+E+ EL E E+EE ++ LE+
Sbjct: 17 DQQELAEEISTAISKPVGFGEEFD--------EDELMAELEELEQEELDKNL--LEISGP 66
Query: 416 REKSTPEMP 424
P +P
Sbjct: 67 ETVPLPNVP 75
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli,
hydrolase; 1.90A {Escherichia coli}
Length = 303
Score = 27.2 bits (61), Expect = 9.7
Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 374 SLDREDLDTDVFKQEEEMKKELVEWEKEEQEERKENLELDEVREK 418
S+ + D + K + LV + + +D++
Sbjct: 254 SVSKVDESLE--KLADGDLGTLVPRGSMAISDPNSSS-VDKLAAA 295
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.385
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,627,770
Number of extensions: 411084
Number of successful extensions: 1946
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1559
Number of HSP's successfully gapped: 561
Length of query: 439
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 343
Effective length of database: 4,021,377
Effective search space: 1379332311
Effective search space used: 1379332311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)