RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4597
         (110 letters)



>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein,
           lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A
           {Dictyostelium discoideum} PDB: 2uuv_A*
          Length = 584

 Score = 78.6 bits (194), Expect = 1e-18
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 1   MALLVL---GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYY 57
           + L ++   G  + V  +   ++ I  +      G + G+      Y + YIRDF  D+ 
Sbjct: 392 VCLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHN 451

Query: 58  FIGDSFETSVPWDKTVLLCINVKKRLTREC-----TVSLVGRI 95
              D  ET+V +     L  + K+   +          +   I
Sbjct: 452 MWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIPAWICAHI 494


>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease,
           hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe}
           PDB: 4fcx_B*
          Length = 417

 Score = 29.9 bits (66), Expect = 0.12
 Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 1/62 (1%)

Query: 42  LTYIIAYIRDFACDYYFI-GDSFETSVPWDKTVLLCINVKKRLTRECTVSLVGRIKSARA 100
              I+   R+   D   + GD F  + P  K +   +   +          +  +     
Sbjct: 41  FNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPCELELLSDTSL 100

Query: 101 DF 102
             
Sbjct: 101 TT 102


>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
          C-terminal domain, reduced form at PH7, oxidoreductase;
          0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
          2fwf_A 2fwg_A 1vrs_D 1uc7_A
          Length = 134

 Score = 25.9 bits (57), Expect = 2.2
 Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 15/46 (32%)

Query: 1  MALLVLGDPE-------------DVKNNEDKIYSIAKRYG--GIPA 31
                 DP+             +V  N+ +  ++ K     G+P 
Sbjct: 49 FEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPT 94


>2i2x_A MTAB, methyltransferase 1; TIM barrel and helix bundle (MTAB),
           rossman fold and helix B (MTAC); HET: B13; 2.50A
           {Methanosarcina barkeri}
          Length = 461

 Score = 25.0 bits (54), Expect = 7.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 17  DKIYSIAKRYGGIPAGESN 35
             I  IAK+ G I AG+++
Sbjct: 201 TDISKIAKKTGTISAGDTD 219


>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical
           dehydratase, lyase; 1.82A {Clostridium difficile} PDB:
           3o3n_A* 3o3o_A
          Length = 408

 Score = 24.7 bits (53), Expect = 8.6
 Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 3/45 (6%)

Query: 11  DVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACD 55
            ++   + +  +A  Y  +    +  R      Y +  + +  CD
Sbjct: 295 ALQYEVNDLDGMAVAYSTMFNNVNLDRM---TKYRVDSLVEGKCD 336


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.142    0.429 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,760,240
Number of extensions: 95227
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 7
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.1 bits)