RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4597
         (110 letters)



>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol
           methylhydroxylase {Pseudomonas putida [TaxId: 303]}
          Length = 279

 Score = 30.5 bits (68), Expect = 0.026
 Identities = 10/70 (14%), Positives = 19/70 (27%), Gaps = 7/70 (10%)

Query: 7   GDPEDVKNNEDKIYSIAKRYGGI-------PAGESNGRRGYMLTYIIAYIRDFACDYYFI 59
           G  E V  N   +  + K+ G                +    L   +  +++F    +  
Sbjct: 87  GTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRG 146

Query: 60  GDSFETSVPW 69
           G       P 
Sbjct: 147 GGGSMWFAPV 156


>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 76

 Score = 24.0 bits (52), Expect = 2.6
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 17 DKIYSIAKRYGGIPAGESNGRRGY 40
          D IY      GG   G  NGR G+
Sbjct: 33 DIIYVTRVEEGGWWEGTLNGRTGW 56


>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 98

 Score = 23.3 bits (50), Expect = 5.6
 Identities = 7/24 (29%), Positives = 8/24 (33%)

Query: 17 DKIYSIAKRYGGIPAGESNGRRGY 40
            I  + K       GE NG  G 
Sbjct: 57 QLINVMNKDDPDWWQGEINGVTGL 80


>d2icwg1 a.202.1.1 (G:1-213) Superantigen MAM {Mycoplasma
           arthritidis [TaxId: 2111]}
          Length = 213

 Score = 23.5 bits (50), Expect = 7.5
 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 57  YFIGDSFETSVPWDKTVLLCINVKKRL--TRECTVSLVGRIKSARADF 102
           YFI  +      WDK V L   +K +L   +         I   R  F
Sbjct: 120 YFISQNKNFQELWDKAVKLTKEMKIKLKGQKLDLRDGEVAINKVRELF 167


>d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1
           [TaxId: 10678]}
          Length = 110

 Score = 23.3 bits (49), Expect = 7.6
 Identities = 3/76 (3%), Positives = 17/76 (22%), Gaps = 5/76 (6%)

Query: 37  RRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTVSLVGRIK 96
           R+ +        +        +   +     P +   +    +  +       ++   + 
Sbjct: 15  RQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQARGLAVKTIQQHLG 74

Query: 97  SAR-----ADFILPTK 107
                   +    P+ 
Sbjct: 75  QLNMLHRRSGLPRPSD 90


>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 62

 Score = 22.4 bits (48), Expect = 7.9
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 17 DKIYSIAKRYGGIPAGESNGRRGY 40
          D I  ++K       GES G+ G 
Sbjct: 28 DIILVLSKVNEEWLEGESKGKVGI 51


>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
            [TaxId: 274]}
          Length = 1504

 Score = 23.2 bits (49), Expect = 10.0
 Identities = 15/77 (19%), Positives = 27/77 (35%)

Query: 19   IYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCIN 78
            I S   R GG          GY+   ++    +        G +   SVP  +   +  +
Sbjct: 1071 ISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRS 1130

Query: 79   VKKRLTRECTVSLVGRI 95
            ++ R   +    L GR+
Sbjct: 1131 LRLRKRADIEAGLYGRV 1147


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.142    0.429 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 431,881
Number of extensions: 18806
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 9
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.3 bits)