BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4598
(369 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96T60|PNKP_HUMAN Bifunctional polynucleotide phosphatase/kinase OS=Homo sapiens
GN=PNKP PE=1 SV=1
Length = 521
Score = 282 bits (721), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 196/360 (54%), Gaps = 55/360 (15%)
Query: 12 KLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY 71
KLLVFT+ V K+A FDLDGTLITT+SGKVFP DW++L+ I L++ +GY
Sbjct: 152 KLLVFTAAGVKPQGKVAGFDLDGTLITTRSGKVFPTGPSDWRILYPEIPRKLRELEAEGY 211
Query: 72 KLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQ 131
KLVIFTNQ +IGR K+ +F+AK E +++ L VP Q+ VAT YRKPV GMW++L +
Sbjct: 212 KLVIFTNQMSIGRGKLPAEEFKAKVEAVVEKLGVPFQVLVATHAGLYRKPVTGMWDHLQE 271
Query: 132 EKNGDLAIDISQSFYAGDAAGRAANWAP-KKKKDFACTDHLFAFNLNLAFFTPEQIFLNE 190
+ N I I S + GDAAGR ANWAP +KKKDF+C D LFA NL L F TPE+ FL
Sbjct: 272 QANDGTPISIGDSIFVGDAAGRPANWAPGRKKKDFSCADRLFALNLGLPFATPEEFFLKW 331
Query: 191 KAPDFPNLPTFKPREVYQKAQSQTIPN---IPHDKKQVLIMIGSQGSGKSSFVSTYLKPL 247
A F LP F PR V ++ +P + +V++ +G G+GKS+F+ +L
Sbjct: 332 PAAGF-ELPAFDPRTV-SRSGPLCLPESRALLSASPEVVVAVGFPGAGKSTFLKKHLVSA 389
Query: 248 NYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG 307
Y VNRDTLGSWQ+CV+ + A
Sbjct: 390 GYVHVNRDTLGSWQRCVTTCETA------------------------------------- 412
Query: 308 SWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367
L G V +DNTNPD SR RY++ A+ GV C + E A+HN
Sbjct: 413 ------------LKQGKRVAIDNTNPDAASRARYVQCARAAGVPCRCFLFTATLEQARHN 460
>sp|Q9JLV6|PNKP_MOUSE Bifunctional polynucleotide phosphatase/kinase OS=Mus musculus
GN=Pnkp PE=1 SV=2
Length = 522
Score = 278 bits (712), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 152/364 (41%), Positives = 198/364 (54%), Gaps = 63/364 (17%)
Query: 12 KLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY 71
KLLVFT++ V K+A+FDLDGTLITT+SGKVFP DW++L+ I L++ +GY
Sbjct: 151 KLLVFTASGVKPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGY 210
Query: 72 KLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQ 131
KLVIFTNQ IGR K+ F+ K E +++ L VP Q+ VAT RKPV GMW++L +
Sbjct: 211 KLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSGMWDHLQE 270
Query: 132 EKNGDLAIDISQSFYAGDAAGRAANWAP-KKKKDFACTDHLFAFNLNLAFFTPEQIFLNE 190
+ N + I + S + GDAAGR ANWAP +KKKDF+C D LFA N+ L F TPE+ FL
Sbjct: 271 QANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFATPEEFFLKW 330
Query: 191 KAPDFPNLPTFKPREV-------YQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVSTY 243
A F LP F PR + ++ S PN +V++ +G G+GKS+F+ +
Sbjct: 331 PAARF-ELPAFDPRTISSAGPLYLPESSSLLSPN-----PEVVVAVGFPGAGKSTFIQEH 384
Query: 244 LKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNR 303
L Y VNRDTLGSWQ+CVS +AA
Sbjct: 385 LVSAGYVHVNRDTLGSWQRCVSSCQAA--------------------------------- 411
Query: 304 DTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEH 363
L G VV+DNTNPD SR RYI+ AK GV C + + E
Sbjct: 412 ----------------LRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQ 455
Query: 364 AKHN 367
A+HN
Sbjct: 456 ARHN 459
>sp|Q19683|YZR5_CAEEL Uncharacterized protein F21D5.5 OS=Caenorhabditis elegans
GN=F21D5.5 PE=2 SV=2
Length = 407
Score = 251 bits (641), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 200/370 (54%), Gaps = 54/370 (14%)
Query: 3 GSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESV 62
GSW+ DNG L++FT ++ KIA+FD+DGTLI TKSGKVFP + DW+LL+ +I S
Sbjct: 29 GSWESKDNGDLMIFTHSECEGKEKIAAFDMDGTLIKTKSGKVFPTNCQDWQLLYDSIPSD 88
Query: 63 LKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPV 122
K+ DG+K+VIFTNQ I K+ +F+ K E I+ L +PVQ FV+ YRKP
Sbjct: 89 FKKLHSDGFKIVIFTNQKGIHAGKVDRNEFRKKIEAIVGKLGIPVQAFVSVAGGHYRKPC 148
Query: 123 PGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT 182
GMW L + +N ++ I+ +S + GDAAGR + + KKD + D FA N+ + F T
Sbjct: 149 VGMWNEL-KLRNDEVEINEKESIFVGDAAGRIKTTS-RPKKDHSYADRFFAANVGVKFQT 206
Query: 183 PEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPN---IPHDKKQVLIMIGSQGSGKSSF 239
PE+ F K + P F P+ ++ + ++ P+ + +K++++M+G GSGKS+F
Sbjct: 207 PEEFFGKSKVDEPWGPPNFDPKNLFSEEITELEPHDAQLKSSEKEIILMVGFPGSGKSTF 266
Query: 240 VSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYT 299
+Y VNRDT+G+WQKCV+ +
Sbjct: 267 AKMLGHQHDYKIVNRDTIGTWQKCVAATR------------------------------- 295
Query: 300 TVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNI 359
+ L G SVV+DNT+PD ESR RYI+ AK+ GV MN
Sbjct: 296 ------------------SYLADGKSVVIDNTSPDLESRKRYIDVAKELGVPIRCFEMNC 337
Query: 360 SKEHAKHNIK 369
S EHA+HNI+
Sbjct: 338 SMEHAQHNIR 347
>sp|O13911|PNK1_SCHPO Bifunctional polynucleotide phosphatase/kinase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pnk1 PE=1 SV=2
Length = 408
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/365 (31%), Positives = 172/365 (47%), Gaps = 65/365 (17%)
Query: 5 WDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLK 64
W I D+ L + + + K +FDLDGTLI TKSG+VF D DW ++ LK
Sbjct: 50 WSITDS--LYIAKYGKLKKTKKFIAFDLDGTLIKTKSGRVFSKDAADWTWWHPSVVPKLK 107
Query: 65 QYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPG 124
D Y LVIF+NQ I RK + FQ K I +SL++P+ ++ A D++RKP+ G
Sbjct: 108 ALYQDNYSLVIFSNQNGIPRKPSAGHTFQMKIRAIFESLDLPIVLYAAILKDKFRKPLTG 167
Query: 125 MWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE 184
MW ++ N +ID+S Y GDAAGR D TD FA N+ + F TPE
Sbjct: 168 MWNSFLKDVNR--SIDLSFIKYVGDAAGRPG--------DHNSTDLKFAENIGIKFETPE 217
Query: 185 QIFLNEK-APDFPNLPTFKPRE-VYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVST 242
Q FL P PN +F P+ + + + S + +++++++G SGKS+ +
Sbjct: 218 QFFLGHSFVP--PNFESFHPKNYLVRNSSSHPYHFKKSEHQEIVVLVGFPSSGKSTLAES 275
Query: 243 YLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN 302
+ Y VN+D L + KC+ KAA++
Sbjct: 276 QIVTQGYERVNQDILKTKSKCI---KAAIE------------------------------ 302
Query: 303 RDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKE 362
AL SVV+DNTNP ESR +I+ A++ + +H+ S+E
Sbjct: 303 ----------------ALKKEKSVVIDNTNPTIESRKMWIDIAQEFEIPIRCIHLQSSEE 346
Query: 363 HAKHN 367
A+HN
Sbjct: 347 LARHN 351
>sp|Q5UQD2|PNKP_MIMIV Putative bifunctional polynucleotide phosphatase/kinase
OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L469 PE=3
SV=1
Length = 421
Score = 145 bits (365), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 169/369 (45%), Gaps = 84/369 (22%)
Query: 25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGR 84
++ASFDLD TLI +S K T WKL+ S+I+ + + +++ Y +++FTNQG +
Sbjct: 42 VRVASFDLDDTLIV-RSKK-----TQKWKLVDSSIKQKIAELIENKYIIIVFTNQGGMSL 95
Query: 85 KKMSTRDFQAKA-EKIIKSLNVPVQ------MFVATQYDRYRKPVPGMWEYLSQEKNGDL 137
K + KA + ++K L ++VA +YD YRKP G+W + Q+ +
Sbjct: 96 NKKFDKPLWRKAMDDLVKILTSETDNDFYFAIYVAKKYDIYRKPNIGLWNLMKQDIKDEF 155
Query: 138 AIDISQ----SFYAGDAAGRAANWAPKKK-------KDFACTDHLFAFNLNLAFFTPEQI 186
+D Q SF+ GDAAGR KKK DF+ TD FA N+ + F TPE+
Sbjct: 156 NLDSVQISTKSFFCGDAAGRIYPSMFKKKLYPTSKGGDFSDTDRKFALNIGIKFLTPEEF 215
Query: 187 FLNEKAPDFPNLPT------FKPREVYQKAQSQTIPNIPHD--KKQVLIMIGSQGSGKSS 238
+L+ K + NL T P E+ + ++ + N KK++++MIG GSGKS
Sbjct: 216 YLDSKNSE--NLKTNYKLSGVNPTEIIDEIENTKLVNYKFKPRKKEMIVMIGQPGSGKSF 273
Query: 239 FVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNY 298
FV Y+ P Y +N+D + KC+S + A
Sbjct: 274 FVKNYILPNGYVHINQDKCKTKAKCLSETENA---------------------------- 305
Query: 299 TTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCI-AVHM 357
L G SVV+DNTNPD SR Y AK++ + A+ M
Sbjct: 306 ---------------------LSKGKSVVIDNTNPDVISRMTYTNLAKENNYDHVRAIIM 344
Query: 358 NISKEHAKH 366
E AKH
Sbjct: 345 ETPDELAKH 353
>sp|P21286|Y033_NPVAC Uncharacterized 20.8 kDa protein in FGF-VUBI intergenic region
OS=Autographa californica nuclear polyhedrosis virus
PE=3 SV=2
Length = 182
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 101/174 (58%), Gaps = 7/174 (4%)
Query: 13 LLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYK 72
L + +D KIA+FDLDGTLI++K+ FP + DW+LL LK+ + GY
Sbjct: 9 LYAYAVHDGAKRTKIAAFDLDGTLISSKTRSKFPKNPDDWQLL--PCAHKLKRLYELGYD 66
Query: 73 LVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQE 132
LV+FTNQ +G K+ D K E I K+ VP+ +V+ D +RKP GMW ++++
Sbjct: 67 LVVFTNQAHLGSGKIKASDLLYKLENIKKATGVPISFYVSPNKDEHRKPDTGMWREMAKQ 126
Query: 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPEQI 186
ID QSFY GDAAGR +KDF+ +D +FA NL+L F+TPEQ
Sbjct: 127 FT---HIDKEQSFYVGDAAGRIN--LTTGQKDFSDSDRVFAKNLSLQFYTPEQF 175
>sp|Q84JE8|ZDP_ARATH Polynucleotide 3'-phosphatase ZDP OS=Arabidopsis thaliana GN=ZDP
PE=1 SV=1
Length = 694
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 101/191 (52%), Gaps = 27/191 (14%)
Query: 14 LVFTSND--VCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY 71
++F D + +S KIA+FD DG L T S K+ D W L++ +I L+ D GY
Sbjct: 507 VIFLERDDGLNDSEKIAAFDFDGCLAKT-SVKIVGADA--WSLMYPSIPEKLQSLHDQGY 563
Query: 72 KLVIFTNQGAIGR---KKMSTRDFQ-AKAEKIIKSLNVPVQMFVATQY----------DR 117
KLVIFTN+ I R K+ + D + + I+ + VP+Q+F+A D
Sbjct: 564 KLVIFTNESNIDRWKNKRQAAVDSKIGRLNSFIERVKVPIQVFIACGVSSSGGKGGKDDL 623
Query: 118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLN 177
YRKP GMW+ + + N +AID+ +SFY GDAAGR K D + D FA
Sbjct: 624 YRKPKAGMWQLMKKHFNSGIAIDMDKSFYVGDAAGR--------KMDHSDADIKFAQASG 675
Query: 178 LAFFTPEQIFL 188
L FFTPE+ F+
Sbjct: 676 LKFFTPEEYFI 686
>sp|Q03796|TPP1_YEAST Polynucleotide 3'-phosphatase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=TPP1 PE=3 SV=1
Length = 238
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 89/214 (41%), Gaps = 61/214 (28%)
Query: 27 IASFDLDGTLITTKSGKV-FPVDTHDWKLLFSNIESVLKQYL------DDGYKLVIFTNQ 79
+ +FDLD T+I KS + F DW+ + N + YL D +VIF+NQ
Sbjct: 31 VYAFDLDHTIIKPKSPNISFSRSASDWQFINFNSKKSTLDYLCNIIDNDPTAVIVIFSNQ 90
Query: 80 GAIGRKKMSTRDFQAKAEKII------------KSLNVPVQMFVATQ------------- 114
G + +++ KI+ ++L+ + ++ A +
Sbjct: 91 GGVITVPRTSKSCTKYTNKILLFLKAIKNDERGETLSHRLWLYAAPKRPKTFAANHSKIT 150
Query: 115 --------------YDRYRKPVPGMWEYLSQEKNGDL-------AIDISQSFYAGDAAGR 153
+++ RKP+ GM E+ ++ I ++ +Y GDAAGR
Sbjct: 151 FASLGESYNNDPNIFEKVRKPMTGMVEFFKRDLESAYRVSEQISPIKLNWIYYCGDAAGR 210
Query: 154 AANWAPKKKKDFACTDHLFAFNLNLAFFTPEQIF 187
KKDF+ +D FA NL++ F PE+IF
Sbjct: 211 --------KKDFSDSDIKFAENLHVEFKYPEEIF 236
>sp|Q7VL21|GMHB_HAEDU D,D-heptose 1,7-bisphosphate phosphatase OS=Haemophilus ducreyi
(strain 35000HP / ATCC 700724) GN=gmhB PE=3 SV=1
Length = 182
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 59/142 (41%), Gaps = 29/142 (20%)
Query: 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESV---LKQYLDDGYKLVIFTNQGAI 82
K D DGTL G V +D F IE V LKQ D GY LV+ TNQ I
Sbjct: 4 KAVFLDRDGTL-NIDHGYVHQIDD------FQFIEGVGKALKQLQDKGYLLVLVTNQSGI 56
Query: 83 GRKKMSTRDFQAKAEKIIKSLN-----VPVQMFVATQYDR----------YRKPVPGMWE 127
R S + FQ E + SL+ V ++ Y RKP GM+
Sbjct: 57 ARGYFSEQQFQQLTEWMDWSLDEDYGVVLDGIYYCPHYPEGQGEYQQKCDCRKPKAGMF- 115
Query: 128 YLSQEKNGDLAIDISQSFYAGD 149
Q+ DL ID +QS+ GD
Sbjct: 116 ---QQAIKDLNIDPAQSYMVGD 134
>sp|Q9M041|BH140_ARATH Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140
PE=4 SV=1
Length = 912
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 274 VLIMIGSQGSGKSSFVSTYLKP-------LNYTTVNRDTLGSWQKCVSVMKAALDSGLSV 326
V+++IG GSGKS+F T ++ + VN G+ +C+ + +L G SV
Sbjct: 229 VVLLIGPPGSGKSTFCDTAMRSSHRPWSRICQDIVNNGKAGTKAQCLKMATDSLREGKSV 288
Query: 327 VVDNTNPDKESRHRYIE 343
+D N D+E R +I+
Sbjct: 289 FIDRCNLDREQRSEFIK 305
>sp|A1W1K1|HIS7_CAMJJ Histidine biosynthesis bifunctional protein HisB OS=Campylobacter
jejuni subsp. jejuni serotype O:23/36 (strain 81-176)
GN=hisB PE=3 SV=1
Length = 352
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 19/137 (13%)
Query: 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSN--IESVLKQYLDDGYKLVIFTNQGA 81
S KI D DGTLI F +DT + KL F I ++LK + G+K V+ +NQ
Sbjct: 2 SQKILFIDRDGTLIEEPKSD-FQIDTLE-KLRFEKDAIPTLLK-LKNFGFKFVMVSNQDG 58
Query: 82 IGRKKMSTRDFQAKAEK---IIKSLNVPVQ-MFVATQYDR----YRKPVPGMW-EYLSQE 132
+G +F+ EK I+KS + Q +F+ ++ RKP M EY+ E
Sbjct: 59 LGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCACRKPKTAMLEEYIKHE 118
Query: 133 KNGDLAIDISQSFYAGD 149
D QSF GD
Sbjct: 119 -----LYDKEQSFVIGD 130
>sp|A8FNR1|HIS7_CAMJ8 Histidine biosynthesis bifunctional protein HisB OS=Campylobacter
jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC
11828) GN=hisB PE=3 SV=1
Length = 352
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 19/137 (13%)
Query: 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSN--IESVLKQYLDDGYKLVIFTNQGA 81
S KI D DGTLI F +DT + KL F I ++LK + G+K ++ +NQ
Sbjct: 2 SQKILFIDRDGTLIEEPKSD-FQIDTLE-KLRFEKDAIPTLLK-LKNFGFKFIMVSNQDG 58
Query: 82 IGRKKMSTRDFQAKAEK---IIKSLNVPVQ-MFVATQYDR----YRKPVPGMW-EYLSQE 132
+G +F+ EK I+KS + Q +F+ ++ RKP M EY+ E
Sbjct: 59 LGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCACRKPKTAMLEEYIKHE 118
Query: 133 KNGDLAIDISQSFYAGD 149
D QSF GD
Sbjct: 119 -----LYDKEQSFVIGD 130
>sp|A7H5U9|HIS7_CAMJD Histidine biosynthesis bifunctional protein HisB OS=Campylobacter
jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 /
269.97) GN=hisB PE=3 SV=1
Length = 352
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSN--IESVLKQYLDDGYKLVIFTNQGA 81
S KI D DGTLI F +DT + KL F I ++LK G+K V+ +NQ
Sbjct: 2 SQKILFIDRDGTLIEEPKSD-FQIDTLE-KLRFEKDAIPTLLK-LKKFGFKFVMVSNQDG 58
Query: 82 IGRKKMSTRDFQAKAEK---IIKSLNVPVQ-MFVATQYDR----YRKPVPGMW-EYLSQE 132
+G +F+ EK I+KS + Q +F+ ++ RKP M EY+ E
Sbjct: 59 LGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCACRKPKTAMLEEYIKHE 118
Query: 133 KNGDLAIDISQSFYAGD 149
D QSF GD
Sbjct: 119 -----LYDKEQSFVIGD 130
>sp|Q9PM76|HIS7_CAMJE Histidine biosynthesis bifunctional protein HisB OS=Campylobacter
jejuni subsp. jejuni serotype O:2 (strain NCTC 11168)
GN=hisB PE=3 SV=1
Length = 352
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSN--IESVLKQYLDDGYKLVIFTNQGA 81
S KI D DGTLI F +DT + KL F I ++LK G+K V+ +NQ
Sbjct: 2 SQKILFIDRDGTLIEEPKSD-FQIDTLE-KLRFEKDAIPTLLK-LKKFGFKFVMVSNQDG 58
Query: 82 IGRKKMSTRDFQAKAEK---IIKSLNVPVQ-MFVATQYDR----YRKPVPGMW-EYLSQE 132
+G +F+ EK I+KS + Q +F+ ++ RKP M EY+ E
Sbjct: 59 LGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCACRKPKTAMLEEYIKHE 118
Query: 133 KNGDLAIDISQSFYAGD 149
D QSF GD
Sbjct: 119 -----LYDKEQSFVIGD 130
>sp|Q5HSJ2|HIS7_CAMJR Histidine biosynthesis bifunctional protein HisB OS=Campylobacter
jejuni (strain RM1221) GN=hisB PE=3 SV=1
Length = 352
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSN--IESVLKQYLDDGYKLVIFTNQGA 81
S KI D DGTLI F +DT + KL F I ++LK G+K V+ +NQ
Sbjct: 2 SQKILFIDRDGTLIEEPKSD-FQIDTLE-KLRFEKDAIPTLLK-LKKFGFKFVMVSNQDG 58
Query: 82 IGRKKMSTRDFQAKAEK---IIKSLNVPVQ-MFVATQYDR----YRKPVPGMW-EYLSQE 132
+G +F+ EK I+KS + Q +F+ ++ RKP M EY+ E
Sbjct: 59 LGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCVCRKPKTAMLEEYIKHE 118
Query: 133 KNGDLAIDISQSFYAGD 149
D QSF GD
Sbjct: 119 -----LYDKEQSFVIGD 130
>sp|Q9HET9|TPP1_SACMI Polynucleotide 3'-phosphatase OS=Saccharomyces mikatae GN=TPP1 PE=3
SV=1
Length = 245
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 63/215 (29%)
Query: 27 IASFDLDGTLITTKSGKV-FPVDTHDWKLL-FSNIESVLKQYL------DDGYKLVIFTN 78
+ +FDLD T+I KS + +DW+ + F + +S L YL D +VIF+N
Sbjct: 38 VYAFDLDHTIIKPKSPNAKYSRSANDWQFMNFDSKKSTL-DYLFSITDNDLAAVIVIFSN 96
Query: 79 QGAI---GRKKMSTRDFQAKAEKIIKS---------LNVPVQMFVATQ------------ 114
QG + R S + K +K+ L+ + ++ A +
Sbjct: 97 QGGVITVPRTSKSCSKYINKISLFLKAIENDKRGEKLSPRLWIYAAPKRPKTVVTNNKKI 156
Query: 115 ---------------YDRYRKPVPGMWEYLSQEKNGDL-------AIDISQSFYAGDAAG 152
+++ RKP+ GM ++ + I ++ +Y GDAAG
Sbjct: 157 TFPSLCKSYNNDPEIFEKVRKPMTGMADFFRIDITDACRVLKTVPPIKLNWVYYCGDAAG 216
Query: 153 RAANWAPKKKKDFACTDHLFAFNLNLAFFTPEQIF 187
R K DF+ +D FA L++ F PE++F
Sbjct: 217 R--------KNDFSDSDIKFAEKLHVEFKYPEEVF 243
>sp|Q9HKQ2|GMHB_THEAC Probable D,D-heptose 1,7-bisphosphate phosphatase OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=gmhB PE=3 SV=1
Length = 160
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL-----NVPVQM 109
++ + +LK Y GY+++I TNQ IGR S +F+ + ++ L V
Sbjct: 41 IYDDTVGILKHYQGKGYRIIIVTNQSGIGRGYFSMEEFRRFNDGVVNRLLDLGVKVSATY 100
Query: 110 FVATQYDR---YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGD 149
F + D RKP G L E D +DI S GD
Sbjct: 101 FCPHRPDEGCSCRKPGIG----LINEALSDFRVDIGGSLVIGD 139
>sp|Q97B60|GMHB_THEVO Probable D,D-heptose 1,7-bisphosphate phosphatase OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=gmhB PE=3 SV=1
Length = 146
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
Query: 54 LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVAT 113
++ + +L++Y DDG++++I TNQ IGR + F+ ++ + L + A
Sbjct: 26 FIYPDAVDLLQRYQDDGFRIIIVTNQSGIGRGYFTESQFKEFSDFMNDKLKENGIVISAI 85
Query: 114 QYDRY--------RKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDF 165
Y + RKP G++ + + D +DI S GD +A + K F
Sbjct: 86 YYCPHKPEDSCNCRKPETGLFSEVLE----DYKVDIPSSIVVGDRNEIDGEFARRIKLPF 141
Query: 166 ACTDH 170
H
Sbjct: 142 RLLRH 146
>sp|Q7MY63|GMHB2_PHOLL D,D-heptose 1,7-bisphosphate phosphatase 2 OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=gmhB2 PE=3
SV=1
Length = 183
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 23/142 (16%)
Query: 23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAI 82
N K+A D DG +I + + ++ ++ S LK+ D GY+++I TNQ I
Sbjct: 4 NKIKVAFLDRDG-VINKEVNYLHKIEDFEYT---SKCIVGLKKIRDLGYEIIIITNQAGI 59
Query: 83 GRKKMSTRDFQAKA--------EKIIKSLNV------PVQMFVATQYDRY-RKPVPGMWE 127
R S + +Q EK + L++ P + D Y RKP PGM E
Sbjct: 60 ARGYYSEKQYQLLTDWYRNDLKEKGVDILDIFHCPHYPDGIVPELSKDCYCRKPSPGMIE 119
Query: 128 YLSQEKNGDLAIDISQSFYAGD 149
++ +IDI S GD
Sbjct: 120 QARKK----YSIDIKSSILVGD 137
>sp|Q8KAY7|GMHB_CHLTE D,D-heptose 1,7-bisphosphate phosphatase OS=Chlorobium tepidum
(strain ATCC 49652 / DSM 12025 / TLS) GN=gmhB PE=3 SV=1
Length = 199
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 19/143 (13%)
Query: 23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAI 82
SAK+ D DGT I G+ V + + +L + + + G+++V+ TNQ I
Sbjct: 2 ESAKVLFLDRDGT-INRDIGRY--VSSREEFILIDRADEAIAIAREAGFRIVLITNQAGI 58
Query: 83 GRKKMSTRDFQ-----------AKAEKIIKSLNVPVQ-MFVATQYDRY---RKPVPGMWE 127
R ++ +D + + + P + +YDR+ RKP P M E
Sbjct: 59 ARGIVTPQDVEDVNDYLNELLAERQTSFDRCYYCPAHPNYPHPEYDRFIDHRKPSPRMVE 118
Query: 128 Y-LSQEKNGDLAIDISQSFYAGD 149
++ + +D S SF+ GD
Sbjct: 119 QAIADLREEGFEVDRSASFFIGD 141
>sp|Q47XB6|HIS7_COLP3 Histidine biosynthesis bifunctional protein HisB OS=Colwellia
psychrerythraea (strain 34H / ATCC BAA-681) GN=hisB PE=3
SV=1
Length = 361
Score = 38.9 bits (89), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFS-NIESVLKQYLDDGYKLVIFTNQGAIGR 84
KI D DGTL+ + +DT + KL+F N+ + L + G+KLV+ +NQ +G
Sbjct: 7 KILFIDRDGTLVEEPAIDK-QLDTLE-KLVFEPNVIAELLKLQAKGFKLVMVSNQDGLGT 64
Query: 85 KKMSTRDFQAKAEKII---KSLNVPVQ-MFVATQYDR----YRKPVPGMW-EYLSQEKNG 135
DF K++ S V Q + + +D RKP G+ EYL Q +
Sbjct: 65 NSFPQADFDLPHNKMMDLFSSQGVHFQDVLLCPHFDEDNCNCRKPKLGLVSEYLQQGR-- 122
Query: 136 DLAIDISQSFYAGDAA---GRAANWA 158
+D + SF GD G AAN
Sbjct: 123 ---VDFANSFVIGDRETDMGLAANMG 145
>sp|Q8D8Q2|HIS7_VIBVU Histidine biosynthesis bifunctional protein HisB OS=Vibrio
vulnificus (strain CMCP6) GN=hisB PE=3 SV=1
Length = 357
Score = 38.9 bits (89), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 55/133 (41%), Gaps = 15/133 (11%)
Query: 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRK 85
KI D DGTLI F VD D L + L D GY+LV+ TNQ +G
Sbjct: 6 KILFIDRDGTLIVEPPVD-FQVDRLDKLKLEPFVIPSLLSLQDAGYRLVMVTNQDGLGTD 64
Query: 86 KMSTRDFQAKAE---KIIKSLNVPV-QMFVATQYDR----YRKPVPGMW-EYLSQEKNGD 136
DF A +I +S V + + +++ RKP G+ EYL K
Sbjct: 65 SYPQEDFDAPHNMMMEIFESQGVKFDDVLICPHFEKDNCSCRKPKLGLVKEYLQAGK--- 121
Query: 137 LAIDISQSFYAGD 149
+D SF GD
Sbjct: 122 --VDFQNSFVIGD 132
>sp|Q7MLS4|HIS7_VIBVY Histidine biosynthesis bifunctional protein HisB OS=Vibrio
vulnificus (strain YJ016) GN=hisB PE=3 SV=1
Length = 357
Score = 38.9 bits (89), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 55/133 (41%), Gaps = 15/133 (11%)
Query: 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRK 85
KI D DGTLI F VD D L + L D GY+LV+ TNQ +G
Sbjct: 6 KILFIDRDGTLIVEPPVD-FQVDRLDKLKLEPFVIPSLLSLQDAGYRLVMVTNQDGLGTD 64
Query: 86 KMSTRDFQAKAE---KIIKSLNVPV-QMFVATQYDR----YRKPVPGMW-EYLSQEKNGD 136
DF A +I +S V + + +++ RKP G+ EYL K
Sbjct: 65 SYPQEDFDAPHNMMMEIFESQGVKFDDVLICPHFEKDNCSCRKPKLGLVKEYLQAGK--- 121
Query: 137 LAIDISQSFYAGD 149
+D SF GD
Sbjct: 122 --VDFQNSFVIGD 132
>sp|Q9S5G5|HIS7_ECO57 Histidine biosynthesis bifunctional protein HisB OS=Escherichia
coli O157:H7 GN=hisB PE=1 SV=1
Length = 355
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 35/147 (23%)
Query: 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLD---DGYKLVIFTNQG 80
S K D DGTLI+ F VD D KL F V+ Q L GYKLV+ TNQ
Sbjct: 2 SQKYLFIDRDGTLISEPPSD-FQVDRFD-KLAFE--PGVIPQLLKLQKAGYKLVMITNQD 57
Query: 81 AIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVA--TQYDRY-------------RKPVPGM 125
+G + DF N+ +Q+F + Q+D RKP +
Sbjct: 58 GLGTQSFPQADFDGPH-------NLMMQIFTSQGVQFDEVLICPHLPADECDCRKPKVKL 110
Query: 126 WE-YLSQEKNGDLAIDISQSFYAGDAA 151
E YL+++ A+D + S+ GD A
Sbjct: 111 VERYLAEQ-----AMDRANSYVIGDRA 132
>sp|O42643|PRP22_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp22 PE=1 SV=1
Length = 1168
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 14/88 (15%)
Query: 198 LPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 257
LP FK R+ + +A S K Q+L+++G GSGK++ ++ YL YT+ ++ +
Sbjct: 510 LPVFKLRKQFLEAVS---------KNQILVLLGETGSGKTTQITQYLAEEGYTSDSK-MI 559
Query: 258 GSWQ----KCVSVMKAALDSVLIMIGSQ 281
G Q +SV K + V +G +
Sbjct: 560 GCTQPRRVAAMSVAKRVAEEVGCRVGEE 587
>sp|Q59Y41|MSH3_CANAL DNA mismatch repair protein MSH3 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=MSH3 PE=3 SV=1
Length = 1037
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 217 NIPHDKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLI 276
NI +DK +VLI+ G GKSS+V T + L T +G + C + DS+ I
Sbjct: 787 NIEYDKNRVLIITGPNMGGKSSYVKT-VALLTVMT----QIGCYLPCQNATMGIFDSIFI 841
Query: 277 MIGSQGS---GKSSFVSTYLKPLN 297
+G+ + G S+F+ L+ N
Sbjct: 842 RMGANDNILKGYSTFMMEMLQCKN 865
>sp|Q8FG50|HIS7_ECOL6 Histidine biosynthesis bifunctional protein HisB OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=hisB
PE=3 SV=2
Length = 355
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 59/144 (40%), Gaps = 29/144 (20%)
Query: 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIG 83
S K D DGTLI+ F VD D + L + GYKLV+ TNQ +G
Sbjct: 2 SQKYLFIDRDGTLISEPPSD-FQVDRFDKLAFEPGVIPELLRLQKAGYKLVMITNQDGLG 60
Query: 84 RKKMSTRDFQAKAEKIIKSLNVPVQMFVA--TQYDRY-------------RKPVPGMWE- 127
+ DF N+ +Q+F + Q+D RKP + E
Sbjct: 61 TQSFPQADFDGPH-------NLMMQIFTSQGVQFDEVLICPHLPADECDCRKPKVKLVER 113
Query: 128 YLSQEKNGDLAIDISQSFYAGDAA 151
YL+++ A+D + S+ GD A
Sbjct: 114 YLAEQ-----AMDRANSYVIGDRA 132
>sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2
Length = 1168
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 49/176 (27%)
Query: 79 QGAIGRKKMSTRDFQAKA--EKIIKSLNVPVQMFVATQYDRYRKPVPGMWE-YLSQEKNG 135
Q A+ +++ R+ Q + + I K LN P + P+P E +L+QE G
Sbjct: 430 QSALTKERREMREQQQRTMLDSIPKDLNRP-----------WEDPMPETGERHLAQELRG 478
Query: 136 DLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPEQIFLNEKAPDF 195
G +A P+ KKD AF F ++ + E+
Sbjct: 479 ---------------VGLSAYDMPEWKKD--------AFGKTPTFGQRSKLSIQEQRE-- 513
Query: 196 PNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVSTYLKPLNYTT 251
+LP +K +K Q + HD QVL++IG GSGK++ V+ YL YTT
Sbjct: 514 -SLPIYK----LKKELIQAV----HDN-QVLVVIGETGSGKTTQVTQYLAEAGYTT 559
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 253 NRDTLGSWQKCVSVMKAALDS-VLIMIGSQGSGKSSFVSTYLKPLNYTT 300
R++L ++ +++A D+ VL++IG GSGK++ V+ YL YTT
Sbjct: 511 QRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTT 559
>sp|Q83R05|HIS7_SHIFL Histidine biosynthesis bifunctional protein HisB OS=Shigella
flexneri GN=hisB PE=3 SV=2
Length = 355
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 59/144 (40%), Gaps = 29/144 (20%)
Query: 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIG 83
S K D DGTLI+ F VD D + L + GYKLV+ TNQ +G
Sbjct: 2 SQKYLFIDRDGTLISEPPSD-FQVDRFDKLAFEPGVIPELLKLQKAGYKLVMITNQDGLG 60
Query: 84 RKKMSTRDFQAKAEKIIKSLNVPVQMFVA--TQYDRY-------------RKPVPGMWE- 127
+ DF N+ +Q+F + Q+D RKP + E
Sbjct: 61 TQSFPQADFDGPH-------NLMMQIFTSQGVQFDEVLICPHLPADECDCRKPKVKLVEG 113
Query: 128 YLSQEKNGDLAIDISQSFYAGDAA 151
YL+++ A+D + S+ GD A
Sbjct: 114 YLAEQ-----AMDRANSYVIGDRA 132
>sp|P06987|HIS7_ECOLI Histidine biosynthesis bifunctional protein HisB OS=Escherichia
coli (strain K12) GN=hisB PE=1 SV=1
Length = 355
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 62/145 (42%), Gaps = 31/145 (21%)
Query: 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFS-NIESVLKQYLDDGYKLVIFTNQGAI 82
S K D DGTLI+ F VD D KL F + L + GYKLV+ TNQ +
Sbjct: 2 SQKYLFIDRDGTLISEPPSD-FQVDRFD-KLAFEPGVIPELLKLQKAGYKLVMITNQDGL 59
Query: 83 GRKKMSTRDFQAKAEKIIKSLNVPVQMFVA--TQYDRY-------------RKPVPGMWE 127
G + DF N+ +Q+F + Q+D RKP + E
Sbjct: 60 GTQSFPQADFDGPH-------NLMMQIFTSQGVQFDEVLICPHLPADECDCRKPKVKLVE 112
Query: 128 -YLSQEKNGDLAIDISQSFYAGDAA 151
YL+++ A+D + S+ GD A
Sbjct: 113 RYLAEQ-----AMDRANSYVIGDRA 132
>sp|Q9PBC7|HIS7_XYLFA Histidine biosynthesis bifunctional protein HisB OS=Xylella
fastidiosa (strain 9a5c) GN=hisB PE=3 SV=1
Length = 375
Score = 36.6 bits (83), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 61/163 (37%), Gaps = 30/163 (18%)
Query: 27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKK 86
I D DGTLI F +D ++ L + + L + D GY VI TNQ +G
Sbjct: 4 IVFIDRDGTLIEEPPD--FQIDAYEKLRLVNGVIPALLKLRDAGYHFVIVTNQDGLGSPA 61
Query: 87 MSTRDFQAKAEKIIKSLNVPVQMFVATQYDR--------YRKPVPGMWEYLSQEKNGDLA 138
F +++ + +F DR RKP G+ Q+++
Sbjct: 62 YPQASFDGPNALMLQIFSSQGIVFRDVLIDRSWPTDNAPTRKPGIGLMVAYLQDRD---- 117
Query: 139 IDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181
ID ++S GD TD FA NLN+ F
Sbjct: 118 IDWARSAMVGDRP----------------TDLQFAENLNIRGF 144
>sp|P41476|PNKL_NPVAC Putative bifunctional polynucleotide kinase/RNA ligase
OS=Autographa californica nuclear polyhedrosis virus
GN=PNK/PNL PE=4 SV=1
Length = 694
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 29/145 (20%)
Query: 223 KQVLIMIGSQGSGKSSFVSTYLKPLN-YTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQ 281
KQ+L++IG GSGK STY K L YT +NRD + V + +
Sbjct: 394 KQLLVLIGISGSGK----STYAKSLKGYTEINRDDV---------------RVKLFLNGD 434
Query: 282 GSGKSSFVSTYLKPLNYTTVNRDTLGSW--QKCVSVMKAALDSGLSVVVDNTNPDKESRH 339
+ ++F N + R T + C+ A G +VVV +TN + +S
Sbjct: 435 YTKLNAF-------YNQSRKCRQTKEEQITKMCIEQFLKAAKCGANVVVSDTNLNTQSVD 487
Query: 340 RYIEAAKQHGVRCIAVHMNISKEHA 364
+ + A H + M++S E A
Sbjct: 488 MWQKMAATHNYHFLTRLMDVSLETA 512
>sp|B0U3B1|HIS7_XYLFM Histidine biosynthesis bifunctional protein HisB OS=Xylella
fastidiosa (strain M12) GN=hisB PE=3 SV=1
Length = 375
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 61/163 (37%), Gaps = 30/163 (18%)
Query: 27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKK 86
I D DGTLI F +D ++ L + + L + D GY VI TNQ +G
Sbjct: 4 IVFIDRDGTLIEEPPD--FQIDAYEKLRLVNGVIPALLKLRDAGYHFVIVTNQDGLGSPT 61
Query: 87 MSTRDFQAKAEKIIKSLNVPVQMFVATQYDR--------YRKPVPGMWEYLSQEKNGDLA 138
F +++ + +F DR RKP G+ Q+++
Sbjct: 62 YPQASFDGPNALMLQIFSSQGIVFRDVLIDRSWPADNAPTRKPGIGLMVAYLQDRD---- 117
Query: 139 IDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181
ID ++S GD TD FA NLN+ F
Sbjct: 118 IDWARSAMVGDRP----------------TDLQFAENLNIRGF 144
>sp|Q87C31|HIS7_XYLFT Histidine biosynthesis bifunctional protein HisB OS=Xylella
fastidiosa (strain Temecula1 / ATCC 700964) GN=hisB PE=3
SV=1
Length = 375
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 61/163 (37%), Gaps = 30/163 (18%)
Query: 27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKK 86
I D DGTLI F +D ++ L + + L + D GY VI TNQ +G
Sbjct: 4 IVFIDRDGTLIEEPPD--FQIDAYEKLRLVNGVIPALLKLRDAGYHFVIVTNQDGLGSPT 61
Query: 87 MSTRDFQAKAEKIIKSLNVPVQMFVATQYDR--------YRKPVPGMWEYLSQEKNGDLA 138
F +++ + +F DR RKP G+ Q+++
Sbjct: 62 YPQASFDGPNALMLQIFSSQGIVFRDVLIDRSWPADNAPTRKPGIGLMVAYLQDRD---- 117
Query: 139 IDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181
ID ++S GD TD FA NLN+ F
Sbjct: 118 IDWARSAMVGDRP----------------TDLQFAENLNIRGF 144
>sp|B2I5X9|HIS7_XYLF2 Histidine biosynthesis bifunctional protein HisB OS=Xylella
fastidiosa (strain M23) GN=hisB PE=3 SV=1
Length = 375
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 61/163 (37%), Gaps = 30/163 (18%)
Query: 27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKK 86
I D DGTLI F +D ++ L + + L + D GY VI TNQ +G
Sbjct: 4 IVFIDRDGTLIEEPPD--FQIDAYEKLRLVNGVIPALLKLRDAGYHFVIVTNQDGLGSPT 61
Query: 87 MSTRDFQAKAEKIIKSLNVPVQMFVATQYDR--------YRKPVPGMWEYLSQEKNGDLA 138
F +++ + +F DR RKP G+ Q+++
Sbjct: 62 YPQASFDGPNALMLQIFSSQGIVFRDVLIDRSWPADNAPTRKPGIGLMVAYLQDRD---- 117
Query: 139 IDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181
ID ++S GD TD FA NLN+ F
Sbjct: 118 IDWARSAMVGDRP----------------TDLQFAENLNIRGF 144
>sp|Q87QK9|HIS7_VIBPA Histidine biosynthesis bifunctional protein HisB OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=hisB PE=3 SV=1
Length = 357
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 53/133 (39%), Gaps = 15/133 (11%)
Query: 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRK 85
KI D DGTLI F VD D L + L D GY+LV+ TNQ +G
Sbjct: 6 KILFIDRDGTLIVEPPID-FQVDRLDKLKLEPFVIPSLLSLQDAGYRLVMVTNQDGLGTD 64
Query: 86 KMSTRDFQAKAE---KIIKSLNVPV-QMFVATQYDR----YRKPVPGMW-EYLSQEKNGD 136
DF A +I +S V + + ++ RKP GM EYL K
Sbjct: 65 SYPQEDFDAPHNMMMEIFESQGVKFDDVLICPHFEEDNCSCRKPKLGMVKEYLQGGK--- 121
Query: 137 LAIDISQSFYAGD 149
+D S GD
Sbjct: 122 --VDFQNSVVIGD 132
>sp|P62455|HIS7_PHOPR Histidine biosynthesis bifunctional protein HisB OS=Photobacterium
profundum GN=hisB PE=3 SV=1
Length = 361
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 55/133 (41%), Gaps = 15/133 (11%)
Query: 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRK 85
KI D DGTLI F VD D L + L D GYKLV+ TNQ +G
Sbjct: 5 KILFIDRDGTLIVEPPVD-FQVDRLDKLKLEPFVIPALLTLQDAGYKLVMVTNQDGLGTD 63
Query: 86 KMSTRDFQAKAE---KIIKSLNVPV-QMFVATQYDR----YRKPVPGMWE-YLSQEKNGD 136
DF A +I +S V + + ++ RKP G+ + YL Q +
Sbjct: 64 SYPQADFDAPQNMMMEIFESQGVKFDDVLICPHFNEDNCSCRKPKLGLVKSYLQQGR--- 120
Query: 137 LAIDISQSFYAGD 149
+D + S GD
Sbjct: 121 --VDFATSAVIGD 131
>sp|A5DEV6|MSH3_PICGU DNA mismatch repair protein MSH3 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=MSH3 PE=3 SV=2
Length = 960
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 18/111 (16%)
Query: 210 AQSQTIPN---IPHDKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSV 266
+ SQ + N I +D+ +VLI+ G GKSS+V T + G + C S
Sbjct: 711 STSQYVANDIEISYDENRVLIITGPNMGGKSSYVKQVALIALMTQI-----GCYLPCESA 765
Query: 267 MKAALDSVLIMIGSQGS---GKSSFV------STYLKPL-NYTTVNRDTLG 307
+ D++L+ +G++ + G+S+F+ ST +K L N + V D +G
Sbjct: 766 IVGIFDTILVRMGAEDNILKGESTFMVEMSECSTIIKSLTNKSLVILDEIG 816
>sp|Q9AGY5|GMHB_ANETH D,D-heptose 1,7-bisphosphate phosphatase OS=Aneurinibacillus
thermoaerophilus GN=gmhB PE=1 SV=1
Length = 179
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 32/148 (21%)
Query: 30 FDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMST 89
D DG + K+ + D++ + I L+ + + GY L+I TNQ IGR +
Sbjct: 8 LDRDGVINVEKN---YVHKIEDFEFM-DGIFETLRYFQEKGYLLIIITNQAGIGRGYYTE 63
Query: 90 R-----------DFQAKAEKIIKSLNVP------VQMFVATQYDRYRKPVPGMWEYLSQE 132
+F+ + I K P + + +D RKP PGM L +
Sbjct: 64 EQFHILNDWMLSEFEKEGIYITKVYYCPYHPEHGIGKYKRDSFD--RKPNPGMI--LKSQ 119
Query: 133 KNGDLAIDISQSFYAGD-----AAGRAA 155
K + ID+S+S GD AG+ A
Sbjct: 120 K--EFNIDLSKSILVGDKESDIQAGKRA 145
>sp|A5DYV8|MSH3_LODEL DNA mismatch repair protein MSH3 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=MSH3 PE=3 SV=1
Length = 993
Score = 35.0 bits (79), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 217 NIPHDKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLI 276
+I +D +VL++ G GKSS+V + T + G + C + DS+LI
Sbjct: 774 DIRYDSNRVLVITGPNMGGKSSYVKMVALLIIMTQI-----GCYIPCEAATIGIFDSILI 828
Query: 277 MIGSQGS---GKSSFVSTYLKPLN 297
+G+ + G+S+F++ L+ N
Sbjct: 829 RMGASDNLLKGRSTFMTEMLECSN 852
>sp|O25531|GMHB_HELPY D,D-heptose 1,7-bisphosphate phosphatase OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=gmhB PE=3 SV=1
Length = 173
Score = 35.0 bits (79), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 17/136 (12%)
Query: 23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAI 82
N+ K D DG +I G V + +++ I +LK GYKL++ TNQ I
Sbjct: 2 NTNKALFLDRDG-IINIDKGYVSQKEDFEFQ---KGIFELLKHAKSLGYKLLLITNQSGI 57
Query: 83 GRKKMSTRDF----QAKAEKIIKSLNVPVQMFVATQYD-----RYRKPVPGMWEYLSQEK 133
R + +DF Q E + K L + ++ RKP P + ++E
Sbjct: 58 NRGYYTLKDFEQLTQYLQESLFKELGFNLDGIYFCRHAPEENCACRKPKPSLILQAAKEH 117
Query: 134 NGDLAIDISQSFYAGD 149
I + QSF GD
Sbjct: 118 Q----ICLEQSFMIGD 129
>sp|P10368|HIS7_SALTY Histidine biosynthesis bifunctional protein HisB OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=hisB PE=3 SV=2
Length = 355
Score = 35.0 bits (79), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 31/145 (21%)
Query: 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFS-NIESVLKQYLDDGYKLVIFTNQGAI 82
S K D DGTLI+ F VD D KL F + VL + G+KLV+ TNQ +
Sbjct: 2 SQKYLFIDRDGTLISEPPSD-FQVDRFD-KLAFEPEVIPVLLKLQKAGFKLVMITNQDGL 59
Query: 83 GRKKMSTRDFQAKAEKIIKSLNVPVQMFVA--TQYDRY-------------RKPVPGMWE 127
G + DF N+ +Q+F + +D RKP + E
Sbjct: 60 GTQSFPQADFDGPH-------NLMMQIFTSQGVCFDEVLICPHLPADDCDCRKPKVKLVE 112
Query: 128 -YLSQEKNGDLAIDISQSFYAGDAA 151
YL+++ A+D + S+ GD A
Sbjct: 113 RYLAEQ-----AMDSANSYVIGDRA 132
>sp|Q5PDP5|HIS7_SALPA Histidine biosynthesis bifunctional protein HisB OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=hisB PE=3
SV=1
Length = 355
Score = 35.0 bits (79), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 31/145 (21%)
Query: 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFS-NIESVLKQYLDDGYKLVIFTNQGAI 82
S K D DGTLI+ F VD D KL F + VL + G+KLV+ TNQ +
Sbjct: 2 SQKYLFIDRDGTLISEPPSD-FQVDRFD-KLAFEPEVIPVLLKLQKAGFKLVMITNQDGL 59
Query: 83 GRKKMSTRDFQAKAEKIIKSLNVPVQMFVA--TQYDRY-------------RKPVPGMWE 127
G + DF N+ +Q+F + +D RKP + E
Sbjct: 60 GTQSFPQADFDGPH-------NLMMQIFTSQGVCFDEVLICPHLPADDCDCRKPKVKLVE 112
Query: 128 -YLSQEKNGDLAIDISQSFYAGDAA 151
YL+++ A+D + S+ GD A
Sbjct: 113 RYLAEQ-----AMDSANSYVIGDRA 132
>sp|Q8Z5J8|HIS7_SALTI Histidine biosynthesis bifunctional protein HisB OS=Salmonella
typhi GN=hisB PE=3 SV=1
Length = 355
Score = 35.0 bits (79), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 31/145 (21%)
Query: 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFS-NIESVLKQYLDDGYKLVIFTNQGAI 82
S K D DGTLI+ F VD D KL F + VL + G+KLV+ TNQ +
Sbjct: 2 SQKYLFIDRDGTLISEPPSD-FQVDHFD-KLAFEPEVIPVLLKLQKAGFKLVMITNQDGL 59
Query: 83 GRKKMSTRDFQAKAEKIIKSLNVPVQMFVA--TQYDRY-------------RKPVPGMWE 127
G + DF N+ +Q+F + +D RKP + E
Sbjct: 60 GTQSFPQADFDGPH-------NLMMQIFTSQGVCFDEVLICPHLPADDCDCRKPKVKLVE 112
Query: 128 -YLSQEKNGDLAIDISQSFYAGDAA 151
YL+++ A+D + S+ GD A
Sbjct: 113 RYLAEQ-----AMDSANSYVIGDRA 132
>sp|Q9KSX1|HIS7_VIBCH Histidine biosynthesis bifunctional protein HisB OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=hisB PE=3 SV=1
Length = 357
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 26 KIASFDLDGTLITTKSGKVFPVDTHD-WKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGR 84
KI D DGTLI F VD D KL I S+LK + GY+LV+ TNQ +G
Sbjct: 6 KILFIDRDGTLIVEPPVD-FQVDRLDKLKLEPYVIPSLLK-LQEAGYRLVMVTNQDGLGT 63
Query: 85 KKMSTRDFQAKAE---KIIKSLNVPV-QMFVATQYDR----YRKPVPGMW-EYLSQEKNG 135
DF A I +S V + + ++R RKP G+ EYL K
Sbjct: 64 SSYPQADFDAPHNMMMDIFESQGVKFNDVLICPHFERDNCSCRKPKLGLVKEYLQGGK-- 121
Query: 136 DLAIDISQSFYAGD 149
+D S GD
Sbjct: 122 ---VDFKSSAVIGD 132
>sp|B8D708|HIS7_BUCAT Histidine biosynthesis bifunctional protein HisB OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain Tuc7)
GN=hisB PE=3 SV=1
Length = 353
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSN-IESVLKQYLDDGYKLVIFTNQGAIGR 84
KI D DGTLI + F VD+ + KL+F + S L++ ++ YKL++ TNQ +G
Sbjct: 4 KILFIDRDGTLID-EPINTFQVDSIN-KLVFKKYVISSLRKLVELDYKLIMITNQDGLGT 61
Query: 85 KKMSTRDF 92
+ +DF
Sbjct: 62 ESFPLQDF 69
>sp|P57203|HIS7_BUCAI Histidine biosynthesis bifunctional protein HisB OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=hisB PE=3 SV=1
Length = 353
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSN-IESVLKQYLDDGYKLVIFTNQGAIGR 84
KI D DGTLI + F VD+ + KL+F + S L++ ++ YKL++ TNQ +G
Sbjct: 4 KILFIDRDGTLID-EPINTFQVDSIN-KLVFKKYVISSLRKLVELDYKLIMITNQDGLGT 61
Query: 85 KKMSTRDF 92
+ +DF
Sbjct: 62 ESFPLQDF 69
>sp|B8D8Q4|HIS7_BUCA5 Histidine biosynthesis bifunctional protein HisB OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain 5A)
GN=hisB PE=3 SV=1
Length = 353
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSN-IESVLKQYLDDGYKLVIFTNQGAIGR 84
KI D DGTLI + F VD+ + KL+F + S L++ ++ YKL++ TNQ +G
Sbjct: 4 KILFIDRDGTLID-EPINTFQVDSIN-KLVFKKYVISSLRKLVELDYKLIMITNQDGLGT 61
Query: 85 KKMSTRDF 92
+ +DF
Sbjct: 62 ESFPLQDF 69
>sp|B4STN9|HIS7_STRM5 Histidine biosynthesis bifunctional protein HisB
OS=Stenotrophomonas maltophilia (strain R551-3) GN=hisB
PE=3 SV=1
Length = 357
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 59/163 (36%), Gaps = 30/163 (18%)
Query: 27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKK 86
I D DGTLI S F +D ++ + L + D GY+ VI TNQ +G
Sbjct: 4 ILFIDRDGTLIEEPSD--FQIDAYEKLRFVPQVIPALLKLRDAGYQFVIVTNQDGLGSDS 61
Query: 87 MSTRDFQAKAEKIIKSLNVPVQMFVATQYD--------RYRKPVPGMWEYLSQEKNGDLA 138
F E +++ F D RKP G+ Q++ +
Sbjct: 62 YPRASFDGPNELMLQIFESQGITFRDVLIDCSWPQDNAPTRKPGIGLMTAYLQDR----S 117
Query: 139 IDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181
ID ++S GD TD FA NLN+ F
Sbjct: 118 IDWARSGMVGD----------------RITDLQFAENLNIRGF 144
>sp|A2A4P0|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1
Length = 1244
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 12/75 (16%)
Query: 197 NLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT 256
+LP +K +E +A HD Q+LI+IG GSGK++ ++ YL YT+ R
Sbjct: 588 SLPIYKLKEQLVQAV--------HDN-QILIVIGETGSGKTTQITQYLAEAGYTS--RGK 636
Query: 257 LGSWQ-KCVSVMKAA 270
+G Q + V+ M A
Sbjct: 637 IGCTQPRRVAAMSVA 651
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,518,012
Number of Sequences: 539616
Number of extensions: 5588712
Number of successful extensions: 20599
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 20530
Number of HSP's gapped (non-prelim): 113
length of query: 369
length of database: 191,569,459
effective HSP length: 119
effective length of query: 250
effective length of database: 127,355,155
effective search space: 31838788750
effective search space used: 31838788750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)