Query psy4598
Match_columns 369
No_of_seqs 493 out of 3447
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 20:59:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01663 PNK-3'Pase polynucle 100.0 1E-69 2.3E-74 548.6 30.3 317 3-369 148-466 (526)
2 KOG2134|consensus 100.0 1.8E-57 3.9E-62 429.5 25.2 314 2-369 52-366 (422)
3 PF08645 PNK3P: Polynucleotide 100.0 1.3E-47 2.7E-52 334.4 13.4 157 26-187 1-159 (159)
4 TIGR01664 DNA-3'-Pase DNA 3'-p 100.0 4.6E-32 1E-36 238.3 17.6 164 13-188 1-166 (166)
5 COG0241 HisB Histidinol phosph 100.0 1.9E-30 4E-35 228.0 13.6 133 25-180 5-145 (181)
6 PRK05446 imidazole glycerol-ph 99.9 6.1E-27 1.3E-31 227.3 14.0 187 24-241 1-195 (354)
7 TIGR01261 hisB_Nterm histidino 99.9 1.8E-26 3.8E-31 201.8 12.8 139 25-184 1-147 (161)
8 TIGR00213 GmhB_yaeD D,D-heptos 99.9 1.9E-23 4.2E-28 185.2 13.8 131 26-180 2-146 (176)
9 TIGR01656 Histidinol-ppas hist 99.9 6.5E-23 1.4E-27 176.6 14.0 134 26-181 1-142 (147)
10 PRK08942 D,D-heptose 1,7-bisph 99.9 2.1E-21 4.5E-26 172.9 13.6 137 24-183 2-146 (181)
11 TIGR01662 HAD-SF-IIIA HAD-supe 99.8 7.5E-20 1.6E-24 154.3 13.1 127 26-181 1-128 (132)
12 PRK06769 hypothetical protein; 99.8 1.2E-19 2.5E-24 160.6 11.9 131 24-184 3-137 (173)
13 PLN03243 haloacid dehalogenase 99.7 1.5E-17 3.3E-22 156.4 9.2 97 55-183 110-208 (260)
14 PLN02770 haloacid dehalogenase 99.7 1.6E-17 3.4E-22 155.3 8.0 97 55-183 109-207 (248)
15 COG0546 Gph Predicted phosphat 99.7 2.4E-17 5.2E-22 151.3 8.9 100 54-185 89-190 (220)
16 PF13671 AAA_33: AAA domain; P 99.7 5.6E-17 1.2E-21 138.0 10.1 95 274-368 1-115 (143)
17 PRK13226 phosphoglycolate phos 99.7 3E-17 6.5E-22 151.5 8.8 97 55-183 96-194 (229)
18 TIGR02253 CTE7 HAD superfamily 99.7 1E-16 2.3E-21 146.4 11.0 99 55-184 95-195 (221)
19 PRK13288 pyrophosphatase PpaX; 99.7 5.7E-17 1.2E-21 147.8 9.2 97 55-183 83-181 (214)
20 COG4639 Predicted kinase [Gene 99.7 2E-16 4.3E-21 134.2 11.4 97 271-369 1-115 (168)
21 PRK11587 putative phosphatase; 99.7 5.9E-17 1.3E-21 148.3 8.1 97 55-183 84-181 (218)
22 TIGR01428 HAD_type_II 2-haloal 99.7 6.3E-17 1.4E-21 145.6 7.9 96 55-182 93-190 (198)
23 PLN02575 haloacid dehalogenase 99.7 8.3E-17 1.8E-21 157.7 9.3 97 55-183 217-315 (381)
24 TIGR02252 DREG-2 REG-2-like, H 99.7 2.4E-16 5.1E-21 142.3 10.9 95 55-181 106-202 (203)
25 TIGR01454 AHBA_synth_RP 3-amin 99.7 1.6E-16 3.6E-21 143.8 8.2 98 55-184 76-175 (205)
26 PRK14988 GMP/IMP nucleotidase; 99.7 2.3E-16 5E-21 145.2 9.1 94 55-180 94-189 (224)
27 PRK13478 phosphonoacetaldehyde 99.7 6.1E-16 1.3E-20 146.0 11.3 98 55-184 102-203 (267)
28 TIGR01449 PGP_bact 2-phosphogl 99.7 2.3E-16 4.9E-21 143.2 8.0 98 55-184 86-185 (213)
29 TIGR01422 phosphonatase phosph 99.6 6.7E-16 1.5E-20 144.4 10.5 97 55-183 100-200 (253)
30 TIGR03351 PhnX-like phosphonat 99.6 4.1E-16 8.8E-21 142.5 8.8 97 55-183 88-190 (220)
31 PRK10826 2-deoxyglucose-6-phos 99.6 3.7E-16 7.9E-21 143.3 7.5 97 55-183 93-191 (222)
32 TIGR01509 HAD-SF-IA-v3 haloaci 99.6 5.3E-16 1.1E-20 137.0 7.5 95 54-181 85-181 (183)
33 TIGR02009 PGMB-YQAB-SF beta-ph 99.6 3.9E-16 8.4E-21 138.4 6.5 94 54-181 88-183 (185)
34 PRK10725 fructose-1-P/6-phosph 99.6 5.6E-16 1.2E-20 138.0 6.8 95 55-183 89-185 (188)
35 PRK09449 dUMP phosphatase; Pro 99.6 1.2E-15 2.6E-20 139.8 7.9 96 55-182 96-194 (224)
36 PLN02940 riboflavin kinase 99.6 8.5E-16 1.8E-20 152.2 7.2 97 55-183 94-193 (382)
37 PRK06762 hypothetical protein; 99.6 6.2E-15 1.3E-19 129.1 11.2 99 271-369 1-114 (166)
38 PRK13223 phosphoglycolate phos 99.6 2.8E-15 6E-20 142.0 9.3 97 55-183 102-200 (272)
39 TIGR01990 bPGM beta-phosphoglu 99.6 7.6E-16 1.7E-20 136.6 5.1 95 54-182 87-183 (185)
40 TIGR01668 YqeG_hyp_ppase HAD s 99.6 7.1E-15 1.5E-19 129.7 11.1 113 23-183 23-135 (170)
41 TIGR02254 YjjG/YfnB HAD superf 99.6 2.6E-15 5.7E-20 137.0 8.0 98 55-183 98-197 (224)
42 TIGR01993 Pyr-5-nucltdase pyri 99.6 4.4E-15 9.5E-20 132.1 8.8 92 55-181 85-182 (184)
43 PHA02530 pseT polynucleotide k 99.6 1.8E-14 4E-19 138.0 13.2 99 271-369 1-121 (300)
44 PRK13222 phosphoglycolate phos 99.6 5.2E-15 1.1E-19 135.4 8.3 98 55-184 94-193 (226)
45 TIGR02247 HAD-1A3-hyp Epoxide 99.6 4.3E-15 9.4E-20 135.0 7.4 98 55-182 95-194 (211)
46 PLN02779 haloacid dehalogenase 99.5 3.3E-14 7.2E-19 135.6 12.2 96 55-183 145-245 (286)
47 COG0645 Predicted kinase [Gene 99.5 6.3E-14 1.4E-18 121.1 11.7 95 273-367 2-120 (170)
48 cd01427 HAD_like Haloacid deha 99.5 3.5E-14 7.6E-19 117.8 9.9 119 27-181 1-137 (139)
49 TIGR01685 MDP-1 magnesium-depe 99.5 3.2E-14 6.9E-19 125.7 9.7 130 25-183 2-156 (174)
50 PRK10563 6-phosphogluconate ph 99.5 8.1E-15 1.7E-19 134.1 6.2 92 55-181 89-183 (221)
51 PRK10748 flavin mononucleotide 99.5 2E-14 4.3E-19 133.5 8.2 91 55-182 114-206 (238)
52 COG0637 Predicted phosphatase/ 99.5 8.3E-15 1.8E-19 134.7 5.4 96 55-182 87-184 (221)
53 TIGR01549 HAD-SF-IA-v1 haloaci 99.5 2.3E-14 4.9E-19 123.6 7.7 90 55-177 65-154 (154)
54 COG1011 Predicted hydrolase (H 99.5 2.4E-14 5.3E-19 131.1 8.0 95 55-181 100-196 (229)
55 COG2179 Predicted hydrolase of 99.5 5.2E-14 1.1E-18 120.5 8.9 115 22-185 25-139 (175)
56 PRK13225 phosphoglycolate phos 99.5 3.6E-14 7.7E-19 134.5 7.9 94 55-183 143-238 (273)
57 KOG3085|consensus 99.5 4E-14 8.7E-19 129.7 7.8 101 51-184 111-213 (237)
58 PHA02530 pseT polynucleotide k 99.5 1.9E-13 4.1E-18 130.9 11.2 131 24-183 157-295 (300)
59 PRK06698 bifunctional 5'-methy 99.5 8.4E-14 1.8E-18 141.3 9.0 95 55-184 331-427 (459)
60 PF01583 APS_kinase: Adenylyls 99.5 4.4E-13 9.6E-18 115.9 11.4 96 272-369 2-118 (156)
61 cd02021 GntK Gluconate kinase 99.5 4.5E-13 9.7E-18 115.2 11.2 93 274-368 1-115 (150)
62 cd02027 APSK Adenosine 5'-phos 99.5 3.7E-13 8E-18 116.2 10.5 94 274-369 1-115 (149)
63 TIGR03574 selen_PSTK L-seryl-t 99.5 2.7E-13 5.8E-18 126.8 10.3 96 274-369 1-114 (249)
64 PF08433 KTI12: Chromatin asso 99.5 3.2E-13 7E-18 127.4 10.7 98 272-369 1-117 (270)
65 PLN02919 haloacid dehalogenase 99.5 1.7E-13 3.6E-18 151.1 10.0 97 55-183 162-261 (1057)
66 TIGR01670 YrbI-phosphatas 3-de 99.5 2.8E-13 6E-18 117.6 9.4 112 25-180 1-115 (154)
67 COG4088 Predicted nucleotide k 99.4 4E-13 8.7E-18 119.1 9.5 97 272-369 1-120 (261)
68 smart00577 CPDc catalytic doma 99.4 3.5E-13 7.5E-18 116.2 8.8 121 24-180 1-138 (148)
69 TIGR01672 AphA HAD superfamily 99.4 6.5E-13 1.4E-17 122.9 10.6 127 22-183 59-210 (237)
70 TIGR01681 HAD-SF-IIIC HAD-supe 99.4 5.3E-13 1.2E-17 112.3 9.0 107 26-151 1-118 (128)
71 TIGR00338 serB phosphoserine p 99.4 3.3E-13 7.1E-18 123.2 7.5 94 55-180 86-191 (219)
72 cd00227 CPT Chloramphenicol (C 99.4 2E-12 4.3E-17 114.5 11.2 93 273-368 3-128 (175)
73 COG0529 CysC Adenylylsulfate k 99.4 1.9E-12 4.1E-17 112.4 10.7 101 266-368 17-138 (197)
74 PF13419 HAD_2: Haloacid dehal 99.4 8.6E-13 1.9E-17 114.5 8.5 95 55-181 78-174 (176)
75 PRK09456 ?-D-glucose-1-phospha 99.4 5.7E-13 1.2E-17 120.2 7.3 96 55-182 85-183 (199)
76 TIGR01313 therm_gnt_kin carboh 99.4 2.6E-12 5.6E-17 112.1 11.1 90 275-368 1-111 (163)
77 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.4 8.6E-13 1.9E-17 118.4 7.9 98 55-184 81-191 (201)
78 PF06414 Zeta_toxin: Zeta toxi 99.4 4.1E-12 8.9E-17 114.8 11.8 100 269-368 12-138 (199)
79 PHA02597 30.2 hypothetical pro 99.4 1.8E-12 4E-17 116.5 9.4 91 55-183 75-173 (197)
80 TIGR00455 apsK adenylylsulfate 99.4 5.1E-12 1.1E-16 112.6 11.5 97 270-368 16-133 (184)
81 COG0647 NagD Predicted sugar p 99.4 6.3E-12 1.4E-16 117.9 12.1 130 23-184 6-235 (269)
82 PRK10444 UMP phosphatase; Prov 99.3 1.9E-11 4E-16 114.4 13.9 47 118-183 172-218 (248)
83 PLN02811 hydrolase 99.3 4.4E-12 9.6E-17 116.2 9.0 104 53-184 77-184 (220)
84 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.3 1.2E-11 2.6E-16 115.7 11.9 47 118-183 176-222 (249)
85 TIGR01452 PGP_euk phosphoglyco 99.3 1.3E-11 2.7E-16 117.4 11.7 46 119-183 201-246 (279)
86 TIGR01493 HAD-SF-IA-v2 Haloaci 99.3 6.7E-13 1.5E-17 116.8 1.8 83 55-176 91-175 (175)
87 PLN02645 phosphoglycolate phos 99.3 2.4E-11 5.2E-16 117.3 11.3 48 23-83 26-73 (311)
88 TIGR02726 phenyl_P_delta pheny 99.3 3.3E-11 7.2E-16 106.1 10.4 118 23-182 5-123 (169)
89 PRK14527 adenylate kinase; Pro 99.3 3.9E-11 8.5E-16 107.6 11.0 99 270-368 4-129 (191)
90 PRK09552 mtnX 2-hydroxy-3-keto 99.3 9.1E-12 2E-16 114.1 6.9 94 55-181 75-184 (219)
91 PRK14532 adenylate kinase; Pro 99.3 4.9E-11 1.1E-15 106.6 11.4 93 275-367 3-123 (188)
92 TIGR01359 UMP_CMP_kin_fam UMP- 99.2 6.4E-11 1.4E-15 105.1 10.9 94 274-367 1-120 (183)
93 PLN02954 phosphoserine phospha 99.2 2.2E-11 4.7E-16 111.6 7.9 93 55-181 85-193 (224)
94 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.2 2.6E-11 5.6E-16 112.9 8.4 46 22-80 5-50 (242)
95 PRK00889 adenylylsulfate kinas 99.2 1.2E-10 2.7E-15 102.8 11.7 93 272-368 4-117 (175)
96 PRK11009 aphA acid phosphatase 99.2 9.4E-11 2E-15 108.5 11.2 125 22-183 59-210 (237)
97 PRK09484 3-deoxy-D-manno-octul 99.2 6E-11 1.3E-15 105.9 9.6 116 24-181 20-136 (183)
98 PRK14531 adenylate kinase; Pro 99.2 1.5E-10 3.2E-15 103.3 12.0 98 271-368 1-125 (183)
99 TIGR01691 enolase-ppase 2,3-di 99.2 5.2E-11 1.1E-15 109.3 9.3 96 54-183 95-195 (220)
100 PRK03846 adenylylsulfate kinas 99.2 1.4E-10 3E-15 104.8 11.6 100 267-368 19-139 (198)
101 TIGR01686 FkbH FkbH-like domai 99.2 1.2E-10 2.6E-15 112.9 11.5 118 24-179 2-125 (320)
102 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.2 2.1E-10 4.5E-15 107.9 12.7 46 119-183 178-223 (257)
103 PRK05506 bifunctional sulfate 99.2 9.5E-11 2.1E-15 123.5 11.4 98 269-368 457-575 (632)
104 KOG2882|consensus 99.2 1.6E-10 3.4E-15 108.1 11.4 50 22-84 19-68 (306)
105 PRK05537 bifunctional sulfate 99.2 1.7E-10 3.7E-15 119.6 12.4 97 272-369 392-510 (568)
106 TIGR01548 HAD-SF-IA-hyp1 haloa 99.2 1.3E-10 2.9E-15 104.5 9.6 85 59-176 111-197 (197)
107 PF07931 CPT: Chloramphenicol 99.2 1.5E-10 3.3E-15 102.2 9.4 95 273-369 2-128 (174)
108 PF01591 6PF2K: 6-phosphofruct 99.2 1.2E-10 2.6E-15 106.6 8.9 98 271-368 11-141 (222)
109 TIGR01460 HAD-SF-IIA Haloacid 99.1 6.2E-10 1.3E-14 103.3 13.2 47 118-183 186-233 (236)
110 PRK11133 serB phosphoserine ph 99.1 1.2E-10 2.5E-15 112.8 8.3 95 55-181 182-288 (322)
111 PF09419 PGP_phosphatase: Mito 99.1 3E-10 6.5E-15 99.4 9.8 124 21-183 37-163 (168)
112 TIGR03575 selen_PSTK_euk L-ser 99.1 3.8E-10 8.2E-15 109.6 10.7 49 321-369 125-173 (340)
113 TIGR01489 DKMTPPase-SF 2,3-dik 99.1 3.6E-10 7.8E-15 100.1 9.4 92 55-181 73-186 (188)
114 PRK13582 thrH phosphoserine ph 99.1 4.8E-10 1E-14 101.2 9.6 93 55-180 69-167 (205)
115 PRK05541 adenylylsulfate kinas 99.1 5.8E-10 1.3E-14 98.6 9.8 93 272-368 7-119 (176)
116 KOG0635|consensus 99.1 2.8E-10 6.1E-15 96.3 6.8 94 273-368 32-146 (207)
117 cd01428 ADK Adenylate kinase ( 99.1 1.6E-09 3.5E-14 96.7 12.1 94 275-368 2-122 (194)
118 KOG3354|consensus 99.1 8.9E-10 1.9E-14 93.7 9.3 96 272-367 12-134 (191)
119 PRK07261 topology modulation p 99.0 1.1E-09 2.4E-14 96.6 10.0 87 274-368 2-96 (171)
120 PRK06217 hypothetical protein; 99.0 1.1E-09 2.3E-14 97.6 9.9 88 273-368 2-101 (183)
121 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.0 3.7E-10 8.1E-15 101.6 6.6 95 55-181 88-195 (202)
122 PRK00279 adk adenylate kinase; 99.0 2.6E-09 5.5E-14 97.7 11.6 95 274-368 2-124 (215)
123 PLN02200 adenylate kinase fami 99.0 3.5E-09 7.5E-14 98.2 11.9 97 269-367 40-162 (234)
124 COG0703 AroK Shikimate kinase 99.0 2.3E-09 5.1E-14 93.7 9.6 89 273-368 3-112 (172)
125 TIGR01360 aden_kin_iso1 adenyl 99.0 2.4E-09 5.3E-14 95.0 10.0 93 273-368 4-124 (188)
126 TIGR01351 adk adenylate kinase 99.0 3.5E-09 7.6E-14 96.4 11.2 92 275-368 2-121 (210)
127 COG3265 GntK Gluconate kinase 98.9 1.9E-09 4.1E-14 91.2 7.2 87 278-368 1-108 (161)
128 PRK11545 gntK gluconate kinase 98.9 6E-09 1.3E-13 91.3 10.3 86 278-368 1-108 (163)
129 TIGR01488 HAD-SF-IB Haloacid D 98.9 3.3E-09 7.1E-14 93.2 8.3 90 55-176 74-177 (177)
130 PRK13948 shikimate kinase; Pro 98.9 8.2E-09 1.8E-13 92.0 10.5 90 271-368 9-120 (182)
131 PRK00131 aroK shikimate kinase 98.9 6.6E-09 1.4E-13 90.9 9.8 90 271-368 3-114 (175)
132 PRK08118 topology modulation p 98.9 6E-09 1.3E-13 91.7 9.4 85 274-367 3-95 (167)
133 PRK09825 idnK D-gluconate kina 98.9 1.3E-08 2.9E-13 90.2 11.4 91 273-368 4-116 (176)
134 KOG3040|consensus 98.9 1E-08 2.3E-13 90.9 10.4 47 119-184 180-226 (262)
135 TIGR03333 salvage_mtnX 2-hydro 98.9 2.1E-09 4.6E-14 98.1 6.2 95 55-181 71-180 (214)
136 PRK14530 adenylate kinase; Pro 98.9 1.2E-08 2.6E-13 93.2 10.8 91 273-367 4-122 (215)
137 PLN02674 adenylate kinase 98.9 1.5E-08 3.2E-13 94.2 11.3 96 272-367 31-154 (244)
138 cd00464 SK Shikimate kinase (S 98.9 1.7E-08 3.7E-13 86.6 10.4 87 275-368 2-109 (154)
139 PRK01184 hypothetical protein; 98.9 1.8E-08 4E-13 89.5 10.6 90 273-367 2-120 (184)
140 PRK13946 shikimate kinase; Pro 98.9 2E-08 4.3E-13 89.7 10.7 91 271-368 9-120 (184)
141 PRK13947 shikimate kinase; Pro 98.8 1.8E-08 3.8E-13 88.4 10.1 87 274-367 3-110 (171)
142 PRK12339 2-phosphoglycerate ki 98.8 3E-08 6.5E-13 89.5 11.4 90 272-367 3-136 (197)
143 KOG2914|consensus 98.8 2.4E-08 5.2E-13 91.3 10.7 101 55-182 93-194 (222)
144 PRK05057 aroK shikimate kinase 98.8 3.3E-08 7.2E-13 87.3 11.3 89 273-368 5-114 (172)
145 PRK08238 hypothetical protein; 98.8 1.4E-08 3.1E-13 103.3 10.0 124 23-183 8-166 (479)
146 PRK13949 shikimate kinase; Pro 98.8 2.7E-08 5.8E-13 87.7 10.5 91 274-368 3-111 (169)
147 PRK14528 adenylate kinase; Pro 98.8 3.5E-08 7.7E-13 88.3 11.3 95 273-367 2-124 (186)
148 PRK02496 adk adenylate kinase; 98.8 3.2E-08 6.9E-13 88.0 10.9 95 274-368 3-125 (184)
149 KOG3109|consensus 98.8 1.6E-08 3.5E-13 90.5 8.5 92 57-182 103-203 (244)
150 COG0563 Adk Adenylate kinase a 98.8 4.3E-08 9.4E-13 87.1 11.1 94 274-367 2-123 (178)
151 TIGR01456 CECR5 HAD-superfamil 98.8 1.9E-08 4.1E-13 97.6 9.5 44 27-83 2-49 (321)
152 PF13242 Hydrolase_like: HAD-h 98.8 4.9E-09 1.1E-13 79.6 4.1 48 118-184 2-49 (75)
153 PRK13808 adenylate kinase; Pro 98.8 3.9E-08 8.4E-13 95.1 11.2 93 275-367 3-123 (333)
154 PTZ00445 p36-lilke protein; Pr 98.8 3.1E-08 6.7E-13 88.9 9.6 138 23-183 41-204 (219)
155 PRK00625 shikimate kinase; Pro 98.8 2.7E-08 5.9E-13 88.0 9.2 90 274-368 2-113 (173)
156 PTZ00088 adenylate kinase 1; P 98.8 6.1E-08 1.3E-12 89.5 11.8 91 273-367 7-126 (229)
157 KOG3062|consensus 98.8 1.1E-08 2.3E-13 92.2 6.4 97 272-368 1-119 (281)
158 PRK03731 aroL shikimate kinase 98.8 4.1E-08 8.9E-13 86.2 10.1 88 272-367 2-110 (171)
159 PF00406 ADK: Adenylate kinase 98.8 4.7E-08 1E-12 84.2 10.0 92 277-368 1-120 (151)
160 PRK06547 hypothetical protein; 98.8 4.4E-08 9.5E-13 86.6 9.9 97 268-368 11-135 (172)
161 PRK05416 glmZ(sRNA)-inactivati 98.8 7E-08 1.5E-12 92.0 11.9 97 270-367 4-102 (288)
162 PRK03839 putative kinase; Prov 98.8 2.7E-08 5.9E-13 88.2 8.5 80 274-367 2-96 (180)
163 KOG3079|consensus 98.7 7.2E-08 1.6E-12 84.5 9.9 98 268-367 4-129 (195)
164 PRK10078 ribose 1,5-bisphospho 98.7 8.5E-08 1.8E-12 85.6 10.6 91 272-368 2-128 (186)
165 TIGR02251 HIF-SF_euk Dullard-l 98.7 1.2E-08 2.6E-13 89.3 5.0 118 26-181 2-136 (162)
166 TIGR02137 HSK-PSP phosphoserin 98.7 5.8E-08 1.2E-12 88.1 9.2 90 55-180 69-167 (203)
167 TIGR01684 viral_ppase viral ph 98.7 5.8E-08 1.3E-12 91.6 9.3 86 20-126 121-208 (301)
168 PRK14021 bifunctional shikimat 98.7 1E-07 2.2E-12 98.7 11.8 96 269-367 3-119 (542)
169 PRK14529 adenylate kinase; Pro 98.7 1.2E-07 2.6E-12 87.1 10.2 94 275-368 3-123 (223)
170 PF13344 Hydrolase_6: Haloacid 98.7 1.6E-07 3.5E-12 75.6 9.5 88 28-151 1-90 (101)
171 PRK04040 adenylate kinase; Pro 98.7 1.5E-07 3.2E-12 84.5 10.0 36 271-306 1-38 (188)
172 PF00702 Hydrolase: haloacid d 98.7 8.6E-08 1.9E-12 86.4 8.6 88 55-177 128-215 (215)
173 PRK14526 adenylate kinase; Pro 98.6 2.6E-07 5.6E-12 84.4 10.1 90 275-368 3-119 (211)
174 TIGR01533 lipo_e_P4 5'-nucleot 98.6 1.9E-07 4E-12 88.0 9.2 107 23-151 73-198 (266)
175 PLN02459 probable adenylate ki 98.6 4.2E-07 9E-12 85.1 11.3 92 273-368 30-150 (261)
176 PRK12337 2-phosphoglycerate ki 98.6 4E-07 8.6E-12 91.2 11.7 90 270-363 253-395 (475)
177 COG4185 Uncharacterized protei 98.6 1.2E-07 2.7E-12 81.2 6.9 97 271-368 1-114 (187)
178 PLN02199 shikimate kinase 98.6 2.4E-07 5.2E-12 87.9 9.4 91 273-368 103-212 (303)
179 PRK12338 hypothetical protein; 98.6 5.6E-07 1.2E-11 86.6 11.7 93 272-367 4-146 (319)
180 cd02020 CMPK Cytidine monophos 98.5 2.4E-07 5.1E-12 78.7 7.5 84 274-367 1-99 (147)
181 PF08303 tRNA_lig_kinase: tRNA 98.5 5.5E-07 1.2E-11 78.0 9.7 76 274-349 1-81 (168)
182 PRK08233 hypothetical protein; 98.5 5.6E-07 1.2E-11 79.4 10.0 88 272-367 3-114 (182)
183 PRK04182 cytidylate kinase; Pr 98.5 1.5E-07 3.3E-12 82.7 6.3 85 274-368 2-109 (180)
184 PTZ00322 6-phosphofructo-2-kin 98.5 5E-07 1.1E-11 95.9 9.6 96 273-368 216-343 (664)
185 COG1102 Cmk Cytidylate kinase 98.5 6.9E-07 1.5E-11 76.9 8.5 83 274-367 2-107 (179)
186 PRK08356 hypothetical protein; 98.4 2.7E-06 5.8E-11 76.6 11.4 87 273-367 6-131 (195)
187 smart00775 LNS2 LNS2 domain. T 98.4 4.4E-06 9.5E-11 72.8 12.1 122 27-180 1-142 (157)
188 TIGR02322 phosphon_PhnN phosph 98.4 1.6E-06 3.5E-11 76.6 9.5 89 273-368 2-128 (179)
189 PRK08154 anaerobic benzoate ca 98.4 1.4E-06 3.1E-11 84.1 9.9 94 271-368 132-244 (309)
190 PF01202 SKI: Shikimate kinase 98.4 7.5E-07 1.6E-11 77.5 7.0 81 281-368 1-102 (158)
191 PHA03398 viral phosphatase sup 98.4 1.1E-06 2.3E-11 83.2 8.4 73 23-116 126-200 (303)
192 PF13207 AAA_17: AAA domain; P 98.4 1.7E-07 3.7E-12 77.2 2.6 33 274-306 1-33 (121)
193 TIGR02173 cyt_kin_arch cytidyl 98.4 1.5E-06 3.2E-11 75.8 8.5 85 274-368 2-109 (171)
194 PRK14737 gmk guanylate kinase; 98.4 1.9E-06 4.2E-11 77.1 9.3 91 271-367 3-133 (186)
195 TIGR03263 guanyl_kin guanylate 98.4 2.2E-06 4.7E-11 75.7 9.5 89 273-367 2-129 (180)
196 KOG4622|consensus 98.4 7.7E-07 1.7E-11 78.6 6.1 96 273-368 2-139 (291)
197 PRK00081 coaE dephospho-CoA ki 98.4 1.5E-06 3.2E-11 78.3 8.1 35 271-306 1-35 (194)
198 cd01672 TMPK Thymidine monopho 98.3 5.2E-06 1.1E-10 73.9 11.4 96 273-368 1-143 (200)
199 cd02024 NRK1 Nicotinamide ribo 98.3 1.9E-06 4E-11 77.2 8.3 33 274-306 1-34 (187)
200 PRK13951 bifunctional shikimat 98.3 3E-06 6.6E-11 86.6 10.7 87 274-368 2-109 (488)
201 PF12689 Acid_PPase: Acid Phos 98.3 4E-06 8.6E-11 73.7 9.5 124 25-181 3-148 (169)
202 PRK01158 phosphoglycolate phos 98.3 3.8E-06 8.3E-11 77.0 9.9 44 25-80 3-46 (230)
203 COG0560 SerB Phosphoserine pho 98.3 1.8E-06 4E-11 78.8 7.5 99 54-184 77-188 (212)
204 COG3896 Chloramphenicol 3-O-ph 98.3 4.4E-06 9.5E-11 71.6 9.1 106 261-368 12-157 (205)
205 TIGR01689 EcbF-BcbF capsule bi 98.3 2.7E-06 5.9E-11 71.1 7.8 86 26-124 2-91 (126)
206 PRK06696 uridine kinase; Valid 98.3 6.5E-07 1.4E-11 82.3 4.3 39 268-306 18-61 (223)
207 TIGR01487 SPP-like sucrose-pho 98.3 3.8E-06 8.2E-11 76.5 9.2 43 26-80 2-44 (215)
208 PRK11590 hypothetical protein; 98.3 2.6E-06 5.7E-11 77.6 8.0 99 55-185 96-205 (211)
209 PRK00698 tmk thymidylate kinas 98.3 1.3E-05 2.7E-10 72.1 12.3 96 272-367 3-144 (205)
210 PRK05480 uridine/cytidine kina 98.2 6.7E-06 1.5E-10 74.6 10.0 37 270-306 4-43 (209)
211 PRK14730 coaE dephospho-CoA ki 98.2 2.9E-06 6.4E-11 76.5 7.4 35 273-307 2-36 (195)
212 PRK00300 gmk guanylate kinase; 98.2 5.3E-06 1.1E-10 74.9 9.1 90 272-367 5-133 (205)
213 TIGR00152 dephospho-CoA kinase 98.2 3.4E-06 7.5E-11 75.3 7.7 33 274-306 1-33 (188)
214 PRK13975 thymidylate kinase; P 98.2 8.5E-06 1.8E-10 72.9 10.1 28 271-298 1-28 (196)
215 KOG4238|consensus 98.2 2E-06 4.4E-11 82.3 6.0 96 273-368 51-167 (627)
216 TIGR02244 HAD-IG-Ncltidse HAD 98.2 4.7E-06 1E-10 81.2 8.6 103 49-182 179-321 (343)
217 PRK13973 thymidylate kinase; P 98.2 1.6E-05 3.4E-10 72.6 11.6 95 273-367 4-145 (213)
218 PRK04220 2-phosphoglycerate ki 98.2 1.7E-05 3.7E-10 75.7 12.2 93 271-367 91-231 (301)
219 PRK14738 gmk guanylate kinase; 98.2 6.7E-06 1.5E-10 74.7 8.7 93 268-367 9-141 (206)
220 cd02022 DPCK Dephospho-coenzym 98.2 4.7E-06 1E-10 74.0 7.3 32 274-306 1-32 (179)
221 TIGR00235 udk uridine kinase. 98.2 9.6E-06 2.1E-10 73.6 9.5 40 267-306 1-43 (207)
222 TIGR01482 SPP-subfamily Sucros 98.2 1E-05 2.2E-10 73.9 9.5 43 119-181 147-189 (225)
223 TIGR02250 FCP1_euk FCP1-like p 98.1 1.3E-05 2.8E-10 69.7 9.2 108 22-151 3-137 (156)
224 PF03668 ATP_bind_2: P-loop AT 98.1 2E-05 4.3E-10 74.4 10.5 96 272-368 1-99 (284)
225 PRK07667 uridine kinase; Provi 98.1 2.1E-05 4.5E-10 70.8 10.3 35 272-306 17-56 (193)
226 cd02019 NK Nucleoside/nucleoti 98.1 6.9E-06 1.5E-10 61.2 6.0 45 274-339 1-48 (69)
227 PF13238 AAA_18: AAA domain; P 98.1 2.2E-06 4.8E-11 70.7 3.5 84 275-368 1-109 (129)
228 PLN02842 nucleotide kinase 98.1 1.1E-05 2.3E-10 82.2 8.9 89 276-367 1-117 (505)
229 TIGR00041 DTMP_kinase thymidyl 98.1 1.5E-05 3.4E-10 71.2 9.1 96 273-368 4-145 (195)
230 TIGR01544 HAD-SF-IE haloacid d 98.1 9.8E-06 2.1E-10 76.6 8.0 90 55-174 122-228 (277)
231 PLN02924 thymidylate kinase 98.1 2E-05 4.3E-10 72.4 9.6 98 270-368 14-153 (220)
232 TIGR01545 YfhB_g-proteo haloac 98.1 1E-05 2.2E-10 73.8 7.6 99 55-185 95-204 (210)
233 PRK06761 hypothetical protein; 98.1 1.6E-05 3.5E-10 75.5 9.1 93 272-367 3-123 (282)
234 cd01673 dNK Deoxyribonucleosid 98.1 2.3E-05 5E-10 70.1 9.3 95 274-368 1-142 (193)
235 KOG3347|consensus 98.0 1.1E-05 2.5E-10 68.6 6.5 84 273-367 8-109 (176)
236 PRK00091 miaA tRNA delta(2)-is 98.0 3.1E-05 6.7E-10 74.6 10.4 36 271-306 3-38 (307)
237 PRK14734 coaE dephospho-CoA ki 98.0 1.9E-05 4E-10 71.5 8.0 33 273-306 2-34 (200)
238 PTZ00301 uridine kinase; Provi 98.0 3E-05 6.4E-10 70.8 8.7 34 273-306 4-44 (210)
239 KOG1615|consensus 98.0 1E-05 2.3E-10 71.4 5.3 77 55-151 89-183 (227)
240 COG0572 Udk Uridine kinase [Nu 98.0 4.2E-05 9.2E-10 69.6 9.4 35 272-306 8-45 (218)
241 PLN02165 adenylate isopentenyl 98.0 5.5E-05 1.2E-09 73.3 10.6 35 272-306 43-77 (334)
242 COG0194 Gmk Guanylate kinase [ 98.0 3.7E-05 7.9E-10 68.0 8.5 90 271-367 3-131 (191)
243 cd00071 GMPK Guanosine monopho 98.0 2.6E-05 5.7E-10 66.2 7.4 83 274-363 1-123 (137)
244 PLN02422 dephospho-CoA kinase 97.9 3.7E-05 8E-10 71.1 8.7 33 273-306 2-34 (232)
245 cd02028 UMPK_like Uridine mono 97.9 3.3E-05 7.2E-10 68.6 8.0 34 274-307 1-39 (179)
246 PRK13477 bifunctional pantoate 97.9 4.3E-05 9.3E-10 78.3 9.4 35 272-306 284-318 (512)
247 COG1778 Low specificity phosph 97.9 4.2E-05 9.1E-10 65.4 7.7 118 23-182 6-124 (170)
248 smart00072 GuKc Guanylate kina 97.9 8.9E-05 1.9E-09 66.0 10.0 89 272-367 2-131 (184)
249 PRK14732 coaE dephospho-CoA ki 97.9 3.9E-05 8.4E-10 69.3 7.7 32 274-306 1-32 (196)
250 PF08235 LNS2: LNS2 (Lipin/Ned 97.9 0.00013 2.8E-09 63.2 10.2 123 27-179 1-141 (157)
251 PRK14733 coaE dephospho-CoA ki 97.9 5.7E-05 1.2E-09 68.6 8.4 36 271-306 5-40 (204)
252 COG0237 CoaE Dephospho-CoA kin 97.8 0.00012 2.6E-09 66.2 10.1 35 271-306 1-35 (201)
253 PF00004 AAA: ATPase family as 97.8 4.4E-05 9.6E-10 63.1 6.7 57 275-331 1-67 (132)
254 PF00485 PRK: Phosphoribulokin 97.8 4.3E-05 9.3E-10 68.6 7.0 33 274-306 1-42 (194)
255 PRK14731 coaE dephospho-CoA ki 97.8 7.9E-05 1.7E-09 67.8 8.8 34 272-306 5-38 (208)
256 cd02023 UMPK Uridine monophosp 97.8 7.9E-05 1.7E-09 66.9 8.7 33 274-306 1-36 (198)
257 cd02030 NDUO42 NADH:Ubiquinone 97.8 0.00021 4.5E-09 65.5 11.5 25 274-298 1-25 (219)
258 cd02025 PanK Pantothenate kina 97.8 7E-05 1.5E-09 68.8 7.3 33 274-306 1-40 (220)
259 PF00448 SRP54: SRP54-type pro 97.7 9E-05 2E-09 66.9 7.6 36 272-307 1-41 (196)
260 TIGR01485 SPP_plant-cyano sucr 97.7 0.00025 5.5E-09 66.1 10.9 45 118-182 164-208 (249)
261 COG1428 Deoxynucleoside kinase 97.7 0.00014 3.1E-09 65.6 8.5 97 272-368 4-144 (216)
262 PF00625 Guanylate_kin: Guanyl 97.7 0.00021 4.6E-09 63.4 9.4 89 272-367 2-131 (183)
263 COG2074 2-phosphoglycerate kin 97.7 0.00022 4.8E-09 65.9 9.5 88 271-363 88-221 (299)
264 PLN02772 guanylate kinase 97.7 0.00013 2.9E-09 72.0 8.7 114 248-367 110-264 (398)
265 PRK00192 mannosyl-3-phosphogly 97.7 0.00011 2.4E-09 69.5 7.9 59 24-106 3-61 (273)
266 KOG0234|consensus 97.7 0.00013 2.9E-09 72.2 8.5 97 272-368 28-158 (438)
267 COG1660 Predicted P-loop-conta 97.7 0.00037 8E-09 64.6 10.8 93 273-368 2-100 (286)
268 PF01121 CoaE: Dephospho-CoA k 97.7 6.1E-05 1.3E-09 67.0 5.6 32 274-306 2-33 (180)
269 PRK13974 thymidylate kinase; P 97.7 0.00032 7E-09 63.9 10.5 96 273-368 4-152 (212)
270 PRK09270 nucleoside triphospha 97.7 0.00032 6.9E-09 64.7 10.5 38 269-306 30-73 (229)
271 PLN02840 tRNA dimethylallyltra 97.7 0.00011 2.4E-09 73.3 7.7 35 272-306 21-55 (421)
272 TIGR01511 ATPase-IB1_Cu copper 97.7 0.00013 2.8E-09 76.3 8.7 104 25-179 385-488 (562)
273 COG4996 Predicted phosphatase 97.6 0.0004 8.6E-09 57.7 8.9 110 27-152 2-127 (164)
274 PLN02348 phosphoribulokinase 97.6 0.00019 4.2E-09 70.9 8.4 37 270-306 47-103 (395)
275 PLN02748 tRNA dimethylallyltra 97.6 0.00012 2.7E-09 74.1 7.2 37 270-306 20-56 (468)
276 COG1936 Predicted nucleotide k 97.6 0.00013 2.9E-09 63.7 6.0 81 273-367 1-99 (180)
277 PRK04195 replication factor C 97.6 0.00041 8.8E-09 71.2 10.3 85 272-356 39-137 (482)
278 TIGR02461 osmo_MPG_phos mannos 97.6 0.00024 5.1E-09 65.5 7.6 54 27-105 1-54 (225)
279 TIGR00174 miaA tRNA isopenteny 97.5 0.00019 4.1E-09 68.4 7.0 33 274-306 1-33 (287)
280 TIGR01525 ATPase-IB_hvy heavy 97.5 0.00028 6.2E-09 73.6 9.0 106 25-180 364-470 (556)
281 KOG1384|consensus 97.5 0.00061 1.3E-08 65.2 10.2 94 271-367 6-154 (348)
282 TIGR00017 cmk cytidylate kinas 97.5 7.5E-05 1.6E-09 68.5 4.0 36 271-306 1-36 (217)
283 PRK03333 coaE dephospho-CoA ki 97.5 0.00024 5.2E-09 71.0 7.5 33 273-306 2-34 (395)
284 PRK15453 phosphoribulokinase; 97.5 0.00013 2.9E-09 69.0 5.3 41 271-311 4-49 (290)
285 PRK00771 signal recognition pa 97.5 0.0008 1.7E-08 67.9 11.1 37 271-307 94-135 (437)
286 cd03115 SRP The signal recogni 97.5 0.0012 2.6E-08 57.8 11.1 34 274-307 2-40 (173)
287 KOG2961|consensus 97.5 0.0008 1.7E-08 57.3 9.1 120 24-181 42-164 (190)
288 PF13173 AAA_14: AAA domain 97.5 0.00062 1.4E-08 56.8 8.5 75 273-347 3-86 (128)
289 PRK15126 thiamin pyrimidine py 97.5 0.00037 8E-09 65.8 7.7 58 25-106 2-59 (272)
290 TIGR01425 SRP54_euk signal rec 97.5 0.00088 1.9E-08 67.2 10.6 37 271-307 99-140 (429)
291 PRK10530 pyridoxal phosphate ( 97.5 0.00041 8.8E-09 65.1 7.9 42 25-78 3-44 (272)
292 PRK14974 cell division protein 97.4 0.0013 2.8E-08 64.2 11.5 37 271-307 139-180 (336)
293 PRK05800 cobU adenosylcobinami 97.4 0.00022 4.8E-09 62.9 5.1 31 274-304 3-35 (170)
294 PF05496 RuvB_N: Holliday junc 97.4 0.00074 1.6E-08 61.9 8.4 74 273-347 51-126 (233)
295 TIGR00099 Cof-subfamily Cof su 97.4 0.00047 1E-08 64.4 7.4 56 27-106 1-56 (256)
296 TIGR01675 plant-AP plant acid 97.4 0.00065 1.4E-08 62.6 8.1 110 23-151 75-206 (229)
297 PHA00729 NTP-binding motif con 97.4 0.00095 2.1E-08 61.4 9.1 24 273-296 18-41 (226)
298 PF03031 NIF: NLI interacting 97.4 0.00046 9.9E-09 59.7 6.6 106 26-151 1-116 (159)
299 TIGR00959 ffh signal recogniti 97.4 0.0013 2.9E-08 66.2 10.8 37 271-307 98-140 (428)
300 COG0324 MiaA tRNA delta(2)-iso 97.4 0.001 2.3E-08 63.7 9.6 36 271-306 2-37 (308)
301 PF06888 Put_Phosphatase: Puta 97.4 0.0011 2.4E-08 61.3 9.4 83 55-151 72-179 (234)
302 PRK09087 hypothetical protein; 97.4 0.00093 2E-08 61.6 8.8 33 273-305 45-77 (226)
303 PRK10867 signal recognition pa 97.4 0.0024 5.2E-08 64.4 12.4 37 271-307 99-141 (433)
304 PRK03669 mannosyl-3-phosphogly 97.4 0.00055 1.2E-08 64.7 7.4 59 23-105 5-63 (271)
305 KOG3308|consensus 97.3 0.00031 6.8E-09 62.8 5.2 34 273-306 5-39 (225)
306 PF01745 IPT: Isopentenyl tran 97.3 0.00051 1.1E-08 62.2 6.7 89 272-363 1-129 (233)
307 PRK12702 mannosyl-3-phosphogly 97.3 0.00081 1.8E-08 63.9 8.3 58 25-106 1-58 (302)
308 PRK10976 putative hydrolase; P 97.3 0.00073 1.6E-08 63.4 8.0 42 25-78 2-43 (266)
309 PRK10513 sugar phosphate phosp 97.3 0.00065 1.4E-08 63.9 7.6 42 25-78 3-44 (270)
310 COG0541 Ffh Signal recognition 97.3 0.0015 3.2E-08 64.9 10.2 37 271-307 99-140 (451)
311 PF13401 AAA_22: AAA domain; P 97.3 0.00068 1.5E-08 56.1 6.6 25 272-296 4-28 (131)
312 PRK12726 flagellar biosynthesi 97.3 0.0019 4.1E-08 63.8 10.6 38 270-307 204-246 (407)
313 PRK09518 bifunctional cytidyla 97.3 0.0014 3E-08 70.5 10.6 33 274-306 3-35 (712)
314 PRK07933 thymidylate kinase; V 97.3 0.0022 4.7E-08 58.7 10.4 94 273-367 1-149 (213)
315 COG0561 Cof Predicted hydrolas 97.3 0.00078 1.7E-08 63.2 7.7 59 24-106 2-60 (264)
316 KOG0744|consensus 97.3 0.00054 1.2E-08 65.5 6.5 28 272-299 177-204 (423)
317 PRK10416 signal recognition pa 97.3 0.0021 4.5E-08 62.4 10.8 37 271-307 113-154 (318)
318 PRK13976 thymidylate kinase; P 97.3 0.0011 2.3E-08 60.6 8.2 96 273-368 1-142 (209)
319 TIGR00064 ftsY signal recognit 97.3 0.0023 4.9E-08 60.8 10.8 37 271-307 71-112 (272)
320 PF08282 Hydrolase_3: haloacid 97.3 0.00068 1.5E-08 61.9 7.0 55 28-106 1-55 (254)
321 PRK04296 thymidine kinase; Pro 97.3 0.0025 5.5E-08 57.1 10.4 86 272-358 2-115 (190)
322 TIGR02463 MPGP_rel mannosyl-3- 97.3 0.00095 2.1E-08 60.8 7.8 55 28-106 2-56 (221)
323 cd02029 PRK_like Phosphoribulo 97.3 0.00025 5.3E-09 66.7 3.9 38 274-311 1-43 (277)
324 COG0125 Tmk Thymidylate kinase 97.3 0.0016 3.6E-08 59.2 9.1 98 271-368 2-145 (208)
325 KOG3877|consensus 97.2 0.0027 5.8E-08 59.5 10.2 97 272-368 71-235 (393)
326 PTZ00174 phosphomannomutase; P 97.2 0.00047 1E-08 64.3 5.4 43 24-78 4-46 (247)
327 TIGR01618 phage_P_loop phage n 97.2 0.00071 1.5E-08 62.1 6.3 23 272-294 12-34 (220)
328 PRK06620 hypothetical protein; 97.2 0.0016 3.5E-08 59.6 8.6 30 273-302 45-74 (214)
329 TIGR01680 Veg_Stor_Prot vegeta 97.2 0.0035 7.6E-08 59.0 10.8 74 23-107 99-189 (275)
330 PTZ00451 dephospho-CoA kinase; 97.2 0.00077 1.7E-08 62.9 6.4 35 273-307 2-36 (244)
331 KOG3220|consensus 97.2 0.0014 3E-08 58.7 7.6 33 273-306 2-34 (225)
332 TIGR01512 ATPase-IB2_Cd heavy 97.2 0.00073 1.6E-08 70.2 6.8 84 55-179 363-447 (536)
333 cd00009 AAA The AAA+ (ATPases 97.2 0.003 6.5E-08 52.1 9.2 77 272-348 19-111 (151)
334 COG2256 MGS1 ATPase related to 97.2 0.00087 1.9E-08 65.8 6.6 58 275-332 51-114 (436)
335 COG1618 Predicted nucleotide k 97.1 0.0051 1.1E-07 53.4 10.3 25 271-295 4-28 (179)
336 PRK12723 flagellar biosynthesi 97.1 0.0022 4.7E-08 63.8 9.3 37 271-307 173-218 (388)
337 PRK06893 DNA replication initi 97.1 0.0021 4.5E-08 59.3 8.6 32 273-304 40-76 (229)
338 TIGR00685 T6PP trehalose-phosp 97.1 0.0023 4.9E-08 59.6 8.9 50 24-80 2-52 (244)
339 COG2019 AdkA Archaeal adenylat 97.1 0.0017 3.7E-08 56.6 7.2 35 272-306 4-39 (189)
340 PRK00023 cmk cytidylate kinase 97.1 0.00034 7.4E-09 64.5 3.2 35 272-306 4-38 (225)
341 PRK11889 flhF flagellar biosyn 97.1 0.0046 1E-07 61.4 11.2 36 272-307 241-281 (436)
342 PRK12724 flagellar biosynthesi 97.1 0.0018 3.8E-08 64.8 8.2 36 272-307 223-264 (432)
343 PRK14729 miaA tRNA delta(2)-is 97.1 0.0014 2.9E-08 63.0 7.0 33 273-306 5-37 (300)
344 smart00382 AAA ATPases associa 97.1 0.00047 1E-08 56.4 3.5 33 273-305 3-40 (148)
345 PF03767 Acid_phosphat_B: HAD 97.1 0.0001 2.3E-09 68.1 -0.6 110 23-151 70-202 (229)
346 TIGR02881 spore_V_K stage V sp 97.1 0.0019 4.2E-08 60.7 8.0 24 272-295 42-65 (261)
347 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00033 7.2E-09 68.5 2.7 28 269-296 75-102 (361)
348 KOG1532|consensus 97.0 0.0012 2.6E-08 61.8 5.8 39 267-305 14-57 (366)
349 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0085 1.8E-07 51.1 10.8 78 273-350 27-118 (144)
350 COG0283 Cmk Cytidylate kinase 97.0 0.00058 1.3E-08 61.8 3.6 34 273-306 5-38 (222)
351 PF03029 ATP_bind_1: Conserved 97.0 0.0013 2.9E-08 61.1 6.1 29 277-305 1-34 (238)
352 TIGR01663 PNK-3'Pase polynucle 97.0 0.00052 1.1E-08 70.7 3.6 8 126-133 239-246 (526)
353 PRK14722 flhF flagellar biosyn 97.0 0.0054 1.2E-07 60.7 10.5 63 273-335 138-228 (374)
354 PRK05439 pantothenate kinase; 97.0 0.00074 1.6E-08 65.1 4.2 38 269-306 83-127 (311)
355 TIGR01484 HAD-SF-IIB HAD-super 97.0 0.0022 4.7E-08 57.6 7.0 42 27-79 1-42 (204)
356 PF05152 DUF705: Protein of un 97.0 0.0039 8.5E-08 58.6 8.7 73 21-114 118-192 (297)
357 CHL00181 cbbX CbbX; Provisiona 97.0 0.0035 7.5E-08 60.0 8.7 23 273-295 60-82 (287)
358 TIGR02245 HAD_IIID1 HAD-superf 97.0 0.0046 1E-07 55.7 8.9 106 22-151 18-139 (195)
359 PRK14956 DNA polymerase III su 97.0 0.0058 1.3E-07 62.2 10.5 89 272-360 40-160 (484)
360 TIGR01486 HAD-SF-IIB-MPGP mann 96.9 0.0021 4.6E-08 60.0 6.9 56 27-106 1-56 (256)
361 KOG0780|consensus 96.9 0.0061 1.3E-07 59.7 10.0 91 271-361 100-225 (483)
362 TIGR02237 recomb_radB DNA repa 96.9 0.0054 1.2E-07 55.4 9.3 35 271-305 11-50 (209)
363 PF07728 AAA_5: AAA domain (dy 96.9 0.00067 1.4E-08 57.2 3.1 72 275-346 2-90 (139)
364 COG1419 FlhF Flagellar GTP-bin 96.9 0.0042 9E-08 61.5 8.9 73 272-344 203-303 (407)
365 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.0018 3.9E-08 59.1 6.1 58 272-332 38-100 (226)
366 COG4359 Uncharacterized conser 96.9 0.0032 6.9E-08 55.5 7.1 90 55-180 74-182 (220)
367 KOG1969|consensus 96.9 0.0018 3.9E-08 67.8 6.4 54 267-320 321-376 (877)
368 PLN00020 ribulose bisphosphate 96.9 0.002 4.3E-08 63.2 6.4 35 270-304 146-180 (413)
369 TIGR00635 ruvB Holliday juncti 96.9 0.0028 6.1E-08 60.7 7.4 75 272-347 30-107 (305)
370 PRK13342 recombination factor 96.9 0.0044 9.6E-08 62.3 9.0 74 273-346 37-117 (413)
371 TIGR00554 panK_bact pantothena 96.9 0.001 2.2E-08 63.7 4.1 38 269-306 59-103 (290)
372 COG4087 Soluble P-type ATPase 96.9 0.0042 9.1E-08 51.8 7.1 87 55-182 31-118 (152)
373 PRK14962 DNA polymerase III su 96.9 0.0063 1.4E-07 62.2 10.1 27 271-297 35-61 (472)
374 TIGR02640 gas_vesic_GvpN gas v 96.9 0.0018 4E-08 61.0 5.8 73 274-346 23-130 (262)
375 cd01120 RecA-like_NTPases RecA 96.9 0.0045 9.8E-08 52.5 7.8 33 274-306 1-38 (165)
376 cd03222 ABC_RNaseL_inhibitor T 96.9 0.012 2.5E-07 52.3 10.5 75 273-347 26-116 (177)
377 PLN02887 hydrolase family prot 96.9 0.0024 5.3E-08 66.7 7.1 45 22-78 305-349 (580)
378 cd01131 PilT Pilus retraction 96.9 0.013 2.8E-07 52.9 11.0 23 274-296 3-25 (198)
379 PHA02544 44 clamp loader, smal 96.8 0.0089 1.9E-07 57.5 10.6 78 271-349 42-129 (316)
380 PRK08099 bifunctional DNA-bind 96.8 0.00074 1.6E-08 67.5 3.1 50 250-299 197-246 (399)
381 PRK10671 copA copper exporting 96.8 0.0065 1.4E-07 66.5 10.6 105 26-180 631-735 (834)
382 PF02223 Thymidylate_kin: Thym 96.8 0.0047 1E-07 54.7 7.8 92 277-368 1-136 (186)
383 COG4618 ArpD ABC-type protease 96.8 0.012 2.6E-07 59.6 11.2 34 273-306 363-400 (580)
384 PRK14960 DNA polymerase III su 96.8 0.0087 1.9E-07 63.0 10.7 89 272-360 37-157 (702)
385 PRK08903 DnaA regulatory inact 96.8 0.0052 1.1E-07 56.3 8.3 34 273-306 43-81 (227)
386 PRK14955 DNA polymerase III su 96.8 0.009 2E-07 59.8 10.6 28 271-298 37-64 (397)
387 cd01394 radB RadB. The archaea 96.8 0.0084 1.8E-07 54.5 9.5 34 272-305 19-57 (218)
388 TIGR02880 cbbX_cfxQ probable R 96.8 0.005 1.1E-07 58.8 8.3 22 274-295 60-81 (284)
389 PRK14949 DNA polymerase III su 96.8 0.0086 1.9E-07 64.9 10.7 90 271-360 37-158 (944)
390 TIGR03877 thermo_KaiC_1 KaiC d 96.8 0.011 2.4E-07 54.7 10.4 58 272-331 21-90 (237)
391 PRK05642 DNA replication initi 96.8 0.0053 1.1E-07 56.9 8.1 57 273-332 46-107 (234)
392 TIGR00390 hslU ATP-dependent p 96.8 0.0012 2.7E-08 65.8 3.9 35 271-305 46-80 (441)
393 PRK14963 DNA polymerase III su 96.8 0.013 2.7E-07 60.5 11.3 28 270-297 34-61 (504)
394 PLN03025 replication factor C 96.7 0.0077 1.7E-07 58.4 9.3 23 274-296 36-58 (319)
395 KOG1533|consensus 96.7 0.0067 1.5E-07 55.7 8.1 32 274-305 4-40 (290)
396 PF13671 AAA_33: AAA domain; P 96.7 0.00035 7.6E-09 58.9 -0.2 36 225-260 1-36 (143)
397 PHA02244 ATPase-like protein 96.7 0.0049 1.1E-07 60.7 7.7 70 275-344 122-203 (383)
398 PRK07429 phosphoribulokinase; 96.7 0.0018 3.9E-08 63.0 4.7 38 269-306 5-45 (327)
399 PRK12402 replication factor C 96.7 0.011 2.3E-07 57.3 10.2 23 274-296 38-60 (337)
400 PF13521 AAA_28: AAA domain; P 96.7 0.0012 2.5E-08 57.4 3.1 26 275-301 2-27 (163)
401 COG1116 TauB ABC-type nitrate/ 96.7 0.014 3E-07 54.1 10.2 32 273-304 30-65 (248)
402 PRK08084 DNA replication initi 96.7 0.0039 8.5E-08 57.8 6.5 33 273-305 46-83 (235)
403 PF13479 AAA_24: AAA domain 96.7 0.0057 1.2E-07 55.8 7.4 56 273-331 4-77 (213)
404 PRK12269 bifunctional cytidyla 96.7 0.0021 4.6E-08 69.9 5.2 34 273-306 35-68 (863)
405 PF12710 HAD: haloacid dehalog 96.7 0.0032 7E-08 55.5 5.6 82 56-151 87-185 (192)
406 PRK13768 GTPase; Provisional 96.7 0.003 6.4E-08 59.3 5.6 35 271-305 1-40 (253)
407 cd00820 PEPCK_HprK Phosphoenol 96.7 0.0025 5.4E-08 51.7 4.3 33 273-307 16-48 (107)
408 CHL00195 ycf46 Ycf46; Provisio 96.6 0.0032 7E-08 64.5 6.1 35 270-304 257-291 (489)
409 cd01124 KaiC KaiC is a circadi 96.6 0.013 2.8E-07 51.5 9.2 31 275-305 2-37 (187)
410 cd03216 ABC_Carb_Monos_I This 96.6 0.034 7.4E-07 48.3 11.6 76 273-348 27-128 (163)
411 PRK10751 molybdopterin-guanine 96.6 0.0017 3.6E-08 57.4 3.2 29 268-296 2-30 (173)
412 PRK14723 flhF flagellar biosyn 96.6 0.014 3.1E-07 62.5 10.7 36 272-307 185-227 (767)
413 COG3839 MalK ABC-type sugar tr 96.6 0.012 2.6E-07 57.3 9.4 33 273-305 30-66 (338)
414 PRK09435 membrane ATPase/prote 96.6 0.012 2.6E-07 57.4 9.3 37 269-305 53-94 (332)
415 PRK12323 DNA polymerase III su 96.6 0.013 2.7E-07 61.7 10.0 91 271-361 37-164 (700)
416 PRK12377 putative replication 96.6 0.0082 1.8E-07 56.2 7.9 73 273-345 102-189 (248)
417 cd03238 ABC_UvrA The excision 96.6 0.031 6.7E-07 49.5 11.2 75 273-347 22-134 (176)
418 PRK10187 trehalose-6-phosphate 96.6 0.0071 1.5E-07 57.1 7.6 48 25-79 14-62 (266)
419 PRK14961 DNA polymerase III su 96.6 0.02 4.3E-07 56.6 11.0 27 271-297 37-63 (363)
420 PRK07003 DNA polymerase III su 96.6 0.018 3.9E-07 61.5 11.1 91 271-361 37-159 (830)
421 PRK08116 hypothetical protein; 96.6 0.012 2.6E-07 55.7 9.0 89 274-363 116-224 (268)
422 PF00910 RNA_helicase: RNA hel 96.6 0.0017 3.6E-08 52.6 2.7 22 275-296 1-22 (107)
423 PRK07994 DNA polymerase III su 96.6 0.015 3.3E-07 61.4 10.5 91 271-361 37-159 (647)
424 COG2884 FtsE Predicted ATPase 96.5 0.03 6.6E-07 50.0 10.6 26 270-295 26-51 (223)
425 PRK05201 hslU ATP-dependent pr 96.5 0.0018 3.9E-08 64.7 3.3 34 272-305 50-83 (443)
426 TIGR03878 thermo_KaiC_2 KaiC d 96.5 0.02 4.3E-07 53.9 10.2 33 272-304 36-73 (259)
427 cd03228 ABCC_MRP_Like The MRP 96.5 0.044 9.5E-07 47.9 11.8 91 273-363 29-157 (171)
428 KOG3078|consensus 96.5 0.0081 1.8E-07 55.3 7.2 92 272-367 15-134 (235)
429 COG4175 ProV ABC-type proline/ 96.5 0.033 7.2E-07 53.5 11.5 34 273-306 55-92 (386)
430 TIGR03881 KaiC_arch_4 KaiC dom 96.5 0.022 4.7E-07 52.2 10.2 34 272-305 20-58 (229)
431 cd03223 ABCD_peroxisomal_ALDP 96.5 0.038 8.3E-07 48.2 11.3 82 273-354 28-143 (166)
432 TIGR02012 tigrfam_recA protein 96.5 0.017 3.6E-07 56.1 9.7 34 272-305 55-93 (321)
433 PRK06645 DNA polymerase III su 96.5 0.015 3.2E-07 59.9 9.9 88 272-359 43-166 (507)
434 PF13604 AAA_30: AAA domain; P 96.5 0.011 2.4E-07 53.2 8.0 81 273-354 19-126 (196)
435 PRK08727 hypothetical protein; 96.5 0.014 3.1E-07 53.9 8.9 57 273-332 42-103 (233)
436 PRK05703 flhF flagellar biosyn 96.5 0.018 3.9E-07 58.1 10.2 36 272-307 221-263 (424)
437 PRK14958 DNA polymerase III su 96.5 0.019 4E-07 59.4 10.4 91 271-361 37-159 (509)
438 PRK11860 bifunctional 3-phosph 96.5 0.0034 7.4E-08 66.9 5.2 35 272-306 442-476 (661)
439 PF06745 KaiC: KaiC; InterPro 96.5 0.02 4.4E-07 52.4 9.6 35 271-305 18-58 (226)
440 COG3769 Predicted hydrolase (H 96.5 0.0083 1.8E-07 54.4 6.7 60 22-106 4-63 (274)
441 KOG0739|consensus 96.5 0.0054 1.2E-07 58.2 5.8 51 274-324 168-225 (439)
442 COG0467 RAD55 RecA-superfamily 96.5 0.021 4.6E-07 53.6 9.9 62 271-332 22-93 (260)
443 COG1222 RPT1 ATP-dependent 26S 96.5 0.016 3.4E-07 56.4 9.0 79 270-348 183-282 (406)
444 PRK09361 radB DNA repair and r 96.5 0.018 3.9E-07 52.6 9.2 34 272-305 23-61 (225)
445 COG5192 BMS1 GTP-binding prote 96.5 0.013 2.9E-07 59.7 8.8 79 272-352 69-165 (1077)
446 PRK14964 DNA polymerase III su 96.4 0.031 6.7E-07 57.3 11.7 89 272-360 35-155 (491)
447 KOG0730|consensus 96.4 0.0078 1.7E-07 62.5 7.2 35 269-303 465-499 (693)
448 COG3709 Uncharacterized compon 96.4 0.026 5.6E-07 49.1 9.3 90 271-367 4-131 (192)
449 PRK14502 bifunctional mannosyl 96.4 0.01 2.2E-07 62.6 8.2 59 24-106 415-473 (694)
450 PRK14952 DNA polymerase III su 96.4 0.032 6.9E-07 58.5 11.8 91 271-361 34-158 (584)
451 TIGR00150 HI0065_YjeE ATPase, 96.4 0.0028 6.2E-08 53.5 3.4 26 273-298 23-48 (133)
452 KOG0733|consensus 96.4 0.0094 2E-07 61.5 7.6 33 272-304 223-255 (802)
453 cd01918 HprK_C HprK/P, the bif 96.4 0.0038 8.1E-08 53.8 4.1 33 273-306 15-47 (149)
454 PLN02318 phosphoribulokinase/u 96.4 0.0038 8.3E-08 64.8 4.9 39 268-306 61-100 (656)
455 PF03215 Rad17: Rad17 cell cyc 96.4 0.0027 5.7E-08 65.6 3.8 30 272-301 45-74 (519)
456 PRK04328 hypothetical protein; 96.4 0.025 5.5E-07 52.8 10.0 58 272-331 23-92 (249)
457 PRK14957 DNA polymerase III su 96.4 0.0096 2.1E-07 61.8 7.7 91 271-361 37-159 (546)
458 COG3700 AphA Acid phosphatase 96.4 0.018 3.8E-07 50.6 8.1 121 26-181 64-208 (237)
459 PRK14969 DNA polymerase III su 96.4 0.03 6.6E-07 58.1 11.4 91 271-361 37-159 (527)
460 cd00267 ABC_ATPase ABC (ATP-bi 96.4 0.046 1E-06 46.9 10.9 75 273-347 26-125 (157)
461 COG1125 OpuBA ABC-type proline 96.4 0.036 7.8E-07 51.7 10.5 34 272-305 27-64 (309)
462 PRK03992 proteasome-activating 96.4 0.006 1.3E-07 60.9 6.0 32 270-301 163-194 (389)
463 COG0552 FtsY Signal recognitio 96.4 0.012 2.7E-07 56.7 7.7 38 270-307 137-179 (340)
464 PLN02796 D-glycerate 3-kinase 96.4 0.0042 9.1E-08 60.6 4.6 37 270-306 98-139 (347)
465 cd03214 ABC_Iron-Siderophores_ 96.3 0.047 1E-06 48.2 11.0 75 273-347 26-142 (180)
466 PRK08691 DNA polymerase III su 96.3 0.033 7.1E-07 59.1 11.3 89 270-358 36-156 (709)
467 TIGR03689 pup_AAA proteasome A 96.3 0.0062 1.3E-07 62.6 5.8 26 271-296 215-240 (512)
468 cd04163 Era Era subfamily. Er 96.3 0.051 1.1E-06 45.7 10.8 23 273-295 4-26 (168)
469 PRK07764 DNA polymerase III su 96.3 0.028 6E-07 61.2 11.0 91 272-362 37-161 (824)
470 PRK14954 DNA polymerase III su 96.3 0.035 7.6E-07 58.6 11.4 28 271-298 37-64 (620)
471 cd02026 PRK Phosphoribulokinas 96.3 0.0038 8.2E-08 59.3 3.8 33 274-306 1-36 (273)
472 cd01393 recA_like RecA is a b 96.3 0.033 7.2E-07 50.7 9.9 34 272-305 19-63 (226)
473 TIGR01242 26Sp45 26S proteasom 96.3 0.01 2.2E-07 58.7 6.9 32 272-303 156-187 (364)
474 cd00983 recA RecA is a bacter 96.3 0.027 5.8E-07 54.7 9.6 33 273-305 56-93 (325)
475 PF11019 DUF2608: Protein of u 96.3 0.03 6.4E-07 52.6 9.6 100 56-181 83-206 (252)
476 PLN02423 phosphomannomutase 96.3 0.0058 1.2E-07 57.0 4.8 41 25-78 7-47 (245)
477 PRK12727 flagellar biosynthesi 96.2 0.027 5.8E-07 58.0 9.8 36 272-307 350-392 (559)
478 KOG3120|consensus 96.2 0.037 8E-07 50.3 9.5 25 55-79 85-110 (256)
479 PRK00080 ruvB Holliday junctio 96.2 0.016 3.5E-07 56.4 7.9 60 272-332 51-112 (328)
480 PF05729 NACHT: NACHT domain 96.2 0.0029 6.2E-08 54.1 2.4 22 274-295 2-23 (166)
481 PRK14951 DNA polymerase III su 96.2 0.023 5.1E-07 59.8 9.5 28 271-298 37-64 (618)
482 PF13245 AAA_19: Part of AAA d 96.2 0.0035 7.7E-08 47.6 2.5 22 272-293 10-31 (76)
483 cd03247 ABCC_cytochrome_bd The 96.2 0.079 1.7E-06 46.6 11.6 76 273-348 29-144 (178)
484 PTZ00454 26S protease regulato 96.2 0.0046 1E-07 61.8 4.0 33 270-302 177-209 (398)
485 PF10662 PduV-EutP: Ethanolami 96.2 0.012 2.7E-07 50.2 6.0 22 274-295 3-24 (143)
486 PRK13886 conjugal transfer pro 96.2 0.059 1.3E-06 50.1 11.0 88 273-360 4-124 (241)
487 cd01130 VirB11-like_ATPase Typ 96.2 0.047 1E-06 48.5 10.1 78 272-351 25-126 (186)
488 TIGR02397 dnaX_nterm DNA polym 96.2 0.058 1.3E-06 52.6 11.6 26 271-296 35-60 (355)
489 cd01122 GP4d_helicase GP4d_hel 96.2 0.032 6.8E-07 52.5 9.5 33 273-305 31-69 (271)
490 COG1120 FepC ABC-type cobalami 96.2 0.055 1.2E-06 50.8 10.8 35 272-306 28-66 (258)
491 PRK11784 tRNA 2-selenouridine 96.2 0.052 1.1E-06 53.3 11.1 141 221-367 87-252 (345)
492 PRK08181 transposase; Validate 96.2 0.011 2.4E-07 56.0 6.2 72 274-345 108-193 (269)
493 cd03230 ABC_DR_subfamily_A Thi 96.2 0.064 1.4E-06 47.0 10.8 75 273-347 27-140 (173)
494 PRK05342 clpX ATP-dependent pr 96.2 0.0036 7.9E-08 62.8 3.1 32 273-304 109-140 (412)
495 TIGR01526 nadR_NMN_Atrans nico 96.2 0.0033 7.2E-08 61.2 2.8 37 265-301 155-191 (325)
496 PRK06731 flhF flagellar biosyn 96.2 0.07 1.5E-06 50.6 11.6 35 273-307 76-115 (270)
497 cd00881 GTP_translation_factor 96.1 0.045 9.8E-07 47.6 9.8 21 275-295 2-22 (189)
498 PTZ00361 26 proteosome regulat 96.1 0.011 2.3E-07 59.8 6.4 31 271-301 216-246 (438)
499 PF03796 DnaB_C: DnaB-like hel 96.1 0.04 8.7E-07 51.6 9.9 85 273-358 20-137 (259)
500 TIGR01650 PD_CobS cobaltochela 96.1 0.0038 8.3E-08 60.5 3.0 28 274-301 66-93 (327)
No 1
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=100.00 E-value=1e-69 Score=548.59 Aligned_cols=317 Identities=44% Similarity=0.781 Sum_probs=289.2
Q ss_pred CCcEEecCceEEEEecCCCCCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCc
Q psy4598 3 GSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAI 82 (369)
Q Consensus 3 ~~W~~~~~~~~~~~~~~~~~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi 82 (369)
..|+.++ +|++|+..++..+.|+++||||||||.++||..|+.+++||+++||+|+++|++|+++||+|+|+|||+|+
T Consensus 148 ~~w~~~~--~~~~~~~~~~~~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI 225 (526)
T TIGR01663 148 PGWENLE--KLLIFTAAGVKGQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGI 225 (526)
T ss_pred ccccccC--ceEEEecCCcCccCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCccc
Confidence 3688886 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccc-cCCCC
Q psy4598 83 GRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAAN-WAPKK 161 (369)
Q Consensus 83 ~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~-~~~~~ 161 (369)
++|+++.++++.++..+++.+|++|++++|++.+.||||+||||++++++++.++++++++||||||++||+.. |.+++
T Consensus 226 ~~G~~~~~~~~~ki~~iL~~lgipfdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~ 305 (526)
T TIGR01663 226 ARGKINADDFKAKIEAIVAKLGVPFQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANGKAAGK 305 (526)
T ss_pred ccCcccHHHHHHHHHHHHHHcCCceEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999876678999999999999999865 66654
Q ss_pred -CCCCCcccHHHHHhCCCCccCchhhccCCCCCCCCCCCCCCcchhccccccCCCCCCCCCCceEEEEEcCCCCCcchhh
Q psy4598 162 -KKDFACTDHLFAFNLNLAFFTPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFV 240 (369)
Q Consensus 162 -~~d~s~~D~~~A~n~Gi~f~~pe~~f~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~i~v~~g~~~~gks~~~ 240 (369)
+|||||+|++||.|+||+|+||||||+++++.++ ..|+|+|+.+.+..+... ++
T Consensus 306 ~~~D~s~~D~~FA~n~gi~F~tPee~Fl~~~~~~~-~~~~f~p~~~~~~~~~~~----------------~~-------- 360 (526)
T TIGR01663 306 KKKDFSCADRLFAANLGIPFATPEEFFLGKPAAGF-EKPAFDPRSVQDQGPLCD----------------PD-------- 360 (526)
T ss_pred CcCCCChhhHHHHHHcCCcccChHHHhCCCCcccc-cccCCCchhhcccccccC----------------Cc--------
Confidence 7999999999999999999999999999999888 789999988754321110 00
Q ss_pred hhccCCCcccccccccccchhhhhhhccccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhHHHHHHHHHHHH
Q psy4598 241 STYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAAL 320 (369)
Q Consensus 241 ~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~~~~~~~~~~~l 320 (369)
.. ...+.+|.+|+|+|+|||||||+|+++++..++.+|++|.++.|+.|...++++|
T Consensus 361 -------~~----------------~~~~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~~~~~~~~a~~~L 417 (526)
T TIGR01663 361 -------DL----------------ALDDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGSTQNCLTACERAL 417 (526)
T ss_pred -------cc----------------ccCCCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHHHHHHHHHHHHHH
Confidence 00 0123457899999999999999999999999999999999999999999999999
Q ss_pred hCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598 321 DSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK 369 (369)
Q Consensus 321 ~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~ 369 (369)
+.|.+||||+||.+++.|..|+++|+++|+++++++|++|.++|++||+
T Consensus 418 ~~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~ 466 (526)
T TIGR01663 418 DQGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIA 466 (526)
T ss_pred hCCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999984
No 2
>KOG2134|consensus
Probab=100.00 E-value=1.8e-57 Score=429.47 Aligned_cols=314 Identities=41% Similarity=0.686 Sum_probs=285.4
Q ss_pred CCCcEEecCceEEEEecCCCCCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCC
Q psy4598 2 KGSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGA 81 (369)
Q Consensus 2 ~~~W~~~~~~~~~~~~~~~~~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~g 81 (369)
.+.|...++|.|++++...+....|++.||+|||||+++||..|+.++.||.+++|.++.+|++|++.||+|+|+|||.|
T Consensus 52 ~~~w~~~~ng~L~i~~~~~v~~~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~ 131 (422)
T KOG2134|consen 52 GGRWSSTENGMLQIFTLPKVNGGSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNG 131 (422)
T ss_pred CCCcccccCcceEEeeccccCCCcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCC
Q psy4598 82 IGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKK 161 (369)
Q Consensus 82 i~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~ 161 (369)
+.++.+...+|++|+.++++.+++||+++++.....||||.+|||+++.+++|.+..|....|+||||++||+.. ..++
T Consensus 132 i~r~~~~~~~f~~Ki~~i~anl~vPi~~~~A~~~~~yRKP~tGMwe~~~~~~nd~~~Isek~s~fvgdaagr~~~-~~~~ 210 (422)
T KOG2134|consen 132 IARGKLELEEFKKKIKAIVANLGVPIQLLAAIIKGKYRKPSTGMWEFLKRLENDSVEISEKASIFVGDAAGRPLD-ALRR 210 (422)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCceEEeeeccCCcccCcchhHHHHHHHHhhccceeeechhhhhhhhccCccc-cccC
Confidence 999999999999999999999999999999999999999999999999999998889999999999999999987 6799
Q ss_pred CCCCCcccHHHHHhCCCCccCchhhccCCCCCCCCCCCCCCcchhcc-ccccCCCCCCCCCCceEEEEEcCCCCCcchhh
Q psy4598 162 KKDFACTDHLFAFNLNLAFFTPEQIFLNEKAPDFPNLPTFKPREVYQ-KAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFV 240 (369)
Q Consensus 162 ~~d~s~~D~~~A~n~Gi~f~~pe~~f~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~i~v~~g~~~~gks~~~ 240 (369)
|||||++|++||.|+|++|++|||||+++....| +.|+|+|.+... +.+.. --.....||++++|.||+|||+|+
T Consensus 211 kkd~S~~D~~FAaN~gvkF~tPeefF~g~~~~~~-~~~~fdp~n~i~~~t~~~---~~~~~~~eiV~~vgfp~sGks~f~ 286 (422)
T KOG2134|consen 211 KKDHSSADRKFAANAGVKFKTPEEFFLGVGVVTW-NSPGFDPKNVISRATSLC---LKLDGHGEIVVAVGFPGSGKSTFA 286 (422)
T ss_pred cccccHHHHHHHHhcCCccCCHHHHhcccccccc-CCCCCCchhHHhhhcchh---cccCCCCcEEEEEecCCCCcchhh
Confidence 9999999999999999999999999999998888 899999965543 33322 112344488888888888888888
Q ss_pred hhccCCCcccccccccccchhhhhhhccccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhHHHHHHHHHHHH
Q psy4598 241 STYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAAL 320 (369)
Q Consensus 241 ~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~~~~~~~~~~~l 320 (369)
.++..+.+| .++++|.+..++.|...+.+++
T Consensus 287 a~~~~~~~y-------------------------------------------------~~vn~d~lg~~~~C~~~~~e~l 317 (422)
T KOG2134|consen 287 AKRVVPNGY-------------------------------------------------KIVNADTLGTPQNCLLANAEAL 317 (422)
T ss_pred hhhcccCce-------------------------------------------------eEeecccCCCchhhHHHHHHHh
Confidence 888777788 5556666666777788899999
Q ss_pred hCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598 321 DSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK 369 (369)
Q Consensus 321 ~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~ 369 (369)
..+.+||+|+|+++.+.|..++..|++.+++++|+.+.++.|.+.|+++
T Consensus 318 ~~~~sVvidnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s~eq~~hn~~ 366 (422)
T KOG2134|consen 318 KHGKSVVIDNTNPDAESRKYYLDCATEREIPIRCFEMNSSVEQAQHNNR 366 (422)
T ss_pred hcccEEeeCCCCcchHHHHHHhhhHHHhCccceeeeeccHHHhhhcccc
Confidence 9999999999999999999999999999999999999999999999874
No 3
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=100.00 E-value=1.3e-47 Score=334.44 Aligned_cols=157 Identities=50% Similarity=0.891 Sum_probs=133.7
Q ss_pred eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCC--CCCCHHHHHHHHHHHHHHc
Q psy4598 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGR--KKMSTRDFQAKAEKIIKSL 103 (369)
Q Consensus 26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~--~~~~~~~~~~~i~~~l~~l 103 (369)
|+|+||||||||.+++|..|++++.||++++|+|+++|++|+++||+|||||||+|+++ +..+.+.+.++++.+++.+
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l 80 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKEL 80 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHc
Confidence 79999999999999999999999999999899999999999999999999999999999 6778899999999999999
Q ss_pred CCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 104 NVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 104 ~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
++|+.+|+|++.+.||||+||||++++++++.++.+|.++|+||||++|| .++++|||++|++||.|+||+|+||
T Consensus 81 ~ip~~~~~a~~~d~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaagr-----~~~~~d~s~~D~~fA~N~gi~f~tp 155 (159)
T PF08645_consen 81 GIPIQVYAAPHKDPCRKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAGR-----SKKKKDFSDSDRKFALNCGIKFYTP 155 (159)
T ss_dssp TS-EEEEECGCSSTTSTTSSHHHHHHCCCTSTT--S-CCC-EEEESSCHC-----TB-S--S--HHHHHHHHHT--EE-H
T ss_pred CCceEEEecCCCCCCCCCchhHHHHHHHhccccccccccceEEEeccCCC-----CCcccccChhHHHHHHHcCCcccCh
Confidence 99999999999999999999999999999987778999999999999998 5679999999999999999999999
Q ss_pred hhhc
Q psy4598 184 EQIF 187 (369)
Q Consensus 184 e~~f 187 (369)
||||
T Consensus 156 e~~f 159 (159)
T PF08645_consen 156 EEFF 159 (159)
T ss_dssp HHHH
T ss_pred hhcC
Confidence 9998
No 4
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=100.00 E-value=4.6e-32 Score=238.27 Aligned_cols=164 Identities=52% Similarity=0.899 Sum_probs=149.3
Q ss_pred EEEEecCCCCCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHH
Q psy4598 13 LLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDF 92 (369)
Q Consensus 13 ~~~~~~~~~~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~ 92 (369)
|++|.++++....|+++||+||||+.+.++..|+..+++|+.+|||+.++|++|+++||+++|+|||++.+++..+.+.+
T Consensus 1 ~~~~~~~~~~~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~ 80 (166)
T TIGR01664 1 LFVFTADGPKPQSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESF 80 (166)
T ss_pred CeeecCCCCCCcCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHH
Confidence 47899999999899999999999999888778999999999889999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCcc--ccCCccEEeeCccccccccCCCCCCCCCcccH
Q psy4598 93 QAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLA--IDISQSFYAGDAAGRAANWAPKKKKDFACTDH 170 (369)
Q Consensus 93 ~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~--i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~ 170 (369)
..+++.+++.+|+++..+++++...++||+|++++++++++ + +++++|+||||+.+| |-+|+..|+
T Consensus 81 ~~~i~~~l~~~gl~~~~ii~~~~~~~~KP~p~~~~~~~~~~----~~~~~~~~~v~VGD~~~~--------~~~~~~~Di 148 (166)
T TIGR01664 81 KNKIEAFLEKLKVPIQVLAATHAGLYRKPMTGMWEYLQSQY----NSPIKMTRSFYVGDAAGR--------KLDFSDADI 148 (166)
T ss_pred HHHHHHHHHHcCCCEEEEEecCCCCCCCCccHHHHHHHHHc----CCCCCchhcEEEECCCCC--------CCCCchhHH
Confidence 88899999999998877777777778999999999999986 5 899999999999854 335567799
Q ss_pred HHHHhCCCCccCchhhcc
Q psy4598 171 LFAFNLNLAFFTPEQIFL 188 (369)
Q Consensus 171 ~~A~n~Gi~f~~pe~~f~ 188 (369)
++|+++||+|+.+|+||+
T Consensus 149 ~aA~~aGi~~~~~~~~~~ 166 (166)
T TIGR01664 149 KFAKNLGLEFKYPEEFFL 166 (166)
T ss_pred HHHHHCCCCcCChHHhcC
Confidence 999999999999999995
No 5
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.97 E-value=1.9e-30 Score=228.00 Aligned_cols=133 Identities=32% Similarity=0.438 Sum_probs=123.4
Q ss_pred ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHH---HHHHHHH
Q psy4598 25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQA---KAEKIIK 101 (369)
Q Consensus 25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~---~i~~~l~ 101 (369)
.|++|+|+||||+.+.++ |....++|. |.|++.++|.+|.+.||++||+|||+||++|+++.++|.. +|..+|+
T Consensus 5 ~k~lflDRDGtin~d~~~--yv~~~~~~~-~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~ 81 (181)
T COG0241 5 QKALFLDRDGTINIDKGD--YVDSLDDFQ-FIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILA 81 (181)
T ss_pred CcEEEEcCCCceecCCCc--ccCcHHHhc-cCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHH
Confidence 689999999999999865 999999998 6999999999999999999999999999999999999987 4778888
Q ss_pred HcCCCeE-EEEecC----CCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhC
Q psy4598 102 SLNVPVQ-MFVATQ----YDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNL 176 (369)
Q Consensus 102 ~l~i~~~-~~~~~~----~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~ 176 (369)
..|+.|+ +++|++ .|.||||+||||+.+++++ ++|+++|+||||+. +|+++|.|+
T Consensus 82 ~~gv~id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~----~iD~~~s~~VGD~~----------------~Dlq~a~n~ 141 (181)
T COG0241 82 SQGVKIDGILYCPHHPEDNCDCRKPKPGMLLSALKEY----NIDLSRSYVVGDRL----------------TDLQAAENA 141 (181)
T ss_pred HcCCccceEEECCCCCCCCCcccCCChHHHHHHHHHh----CCCccceEEecCcH----------------HHHHHHHHC
Confidence 9999886 888986 4789999999999999997 69999999999999 899999999
Q ss_pred CCCc
Q psy4598 177 NLAF 180 (369)
Q Consensus 177 Gi~f 180 (369)
||+.
T Consensus 142 gi~~ 145 (181)
T COG0241 142 GIKG 145 (181)
T ss_pred CCCc
Confidence 9993
No 6
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.94 E-value=6.1e-27 Score=227.32 Aligned_cols=187 Identities=26% Similarity=0.317 Sum_probs=149.9
Q ss_pred CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHH---HHHHHHH
Q psy4598 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQ---AKAEKII 100 (369)
Q Consensus 24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~---~~i~~~l 100 (369)
+.|+++||+||||+.+.++ .|.....+...++||+.+.|.+|+++||+++|+|||+|++.+++.++.+. ..+..++
T Consensus 1 ~~k~l~lDrDgtl~~~~~~-~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL 79 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPT-DFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIF 79 (354)
T ss_pred CCcEEEEeCCCCccCCCCc-cccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHH
Confidence 3689999999999998864 45444444444799999999999999999999999999999998887764 3677889
Q ss_pred HHcCCCeE-EEEec----CCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHh
Q psy4598 101 KSLNVPVQ-MFVAT----QYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFN 175 (369)
Q Consensus 101 ~~l~i~~~-~~~~~----~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n 175 (369)
+.++++|+ +++++ +++.+|||+|+||.++++++ ++++++|+||||+. +|+++|+|
T Consensus 80 ~~~gl~fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l----~v~~~~svmIGDs~----------------sDi~aAk~ 139 (354)
T PRK05446 80 ESQGIKFDEVLICPHFPEDNCSCRKPKTGLVEEYLAEG----AIDLANSYVIGDRE----------------TDVQLAEN 139 (354)
T ss_pred HHcCCceeeEEEeCCcCcccCCCCCCCHHHHHHHHHHc----CCCcccEEEEcCCH----------------HHHHHHHH
Confidence 99999985 56664 56779999999999999885 68999999999998 89999999
Q ss_pred CCCCccCchhhccCCCCCCCCCCCCCCcchhccccccCCCCCCCCCCceEEEEEcCCCCCcchhhh
Q psy4598 176 LNLAFFTPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVS 241 (369)
Q Consensus 176 ~Gi~f~~pe~~f~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~i~v~~g~~~~gks~~~~ 241 (369)
+||+++.... ..+ +++ +++.++....+...+.+.|+||+|.|.+.++|+|++++..
T Consensus 140 aGi~~I~v~~-------~~~-~~~--~i~~~l~~~~r~~~~~R~t~et~i~~~l~ldg~g~~~i~t 195 (354)
T PRK05446 140 MGIKGIRYAR-------ETL-NWD--AIAEQLTKRDRYAHVVRNTKETDIDVEVWLDREGKSKINT 195 (354)
T ss_pred CCCeEEEEEC-------CCC-CHH--HHHHHHhcCCceEEEEecccceEEEEEEEeCCCCceeeec
Confidence 9999976521 112 112 3344444444455678899999999999999999876544
No 7
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.94 E-value=1.8e-26 Score=201.76 Aligned_cols=139 Identities=25% Similarity=0.335 Sum_probs=119.9
Q ss_pred ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHH---HHHHHHHH
Q psy4598 25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQ---AKAEKIIK 101 (369)
Q Consensus 25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~---~~i~~~l~ 101 (369)
.|+++||+||||+.+.++..|...+.+|. ++|||.++|++|+++||+++|+|||+|+++++.+...+. ..+..+++
T Consensus 1 ~~~~~~d~dg~l~~~~~~~~~~~~~~~~~-~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~ 79 (161)
T TIGR01261 1 QKILFIDRDGTLIEEPPSDFQVDALEKLR-FEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFR 79 (161)
T ss_pred CCEEEEeCCCCccccCCCccccCCHHHee-ECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHH
Confidence 48999999999999987633444445554 799999999999999999999999999999988887754 47888999
Q ss_pred HcCCCeE-EEEe----cCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhC
Q psy4598 102 SLNVPVQ-MFVA----TQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNL 176 (369)
Q Consensus 102 ~l~i~~~-~~~~----~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~ 176 (369)
.+|++|+ +++| ++...++||+|+||+.+++++ ++++++|+||||+. .|+++|+++
T Consensus 80 ~~gl~fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~----~~~~~e~l~IGD~~----------------~Di~~A~~a 139 (161)
T TIGR01261 80 SQGIIFDDVLICPHFPDDNCDCRKPKIKLLEPYLKKN----LIDKARSYVIGDRE----------------TDMQLAENL 139 (161)
T ss_pred HCCCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHc----CCCHHHeEEEeCCH----------------HHHHHHHHC
Confidence 9999986 5666 477889999999999999986 68999999999998 899999999
Q ss_pred CCCccCch
Q psy4598 177 NLAFFTPE 184 (369)
Q Consensus 177 Gi~f~~pe 184 (369)
||+++...
T Consensus 140 Gi~~i~~~ 147 (161)
T TIGR01261 140 GIRGIQYD 147 (161)
T ss_pred CCeEEEEC
Confidence 99996543
No 8
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.90 E-value=1.9e-23 Score=185.22 Aligned_cols=131 Identities=24% Similarity=0.350 Sum_probs=111.8
Q ss_pred eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHH---HHHHHHHHHHHH
Q psy4598 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTR---DFQAKAEKIIKS 102 (369)
Q Consensus 26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~---~~~~~i~~~l~~ 102 (369)
|++|||+||||+.+. .|.....+|+ ++||+.++|++|+++||+++|+|||++++++.+... .+...+..++..
T Consensus 2 ~~~~~D~Dgtl~~~~---~~~~~~~~~~-~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (176)
T TIGR00213 2 KAIFLDRDGTINIDH---GYVHEIDNFE-FIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAE 77 (176)
T ss_pred CEEEEeCCCCEeCCC---CCCCCHHHeE-ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHH
Confidence 789999999999643 5778888998 699999999999999999999999999888777654 344566777888
Q ss_pred cCCCeEE-EEec----------CCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHH
Q psy4598 103 LNVPVQM-FVAT----------QYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHL 171 (369)
Q Consensus 103 l~i~~~~-~~~~----------~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~ 171 (369)
+++.|+. +.|. +.+.++||+|+||..+++++ ++++++|+||||+. .|++
T Consensus 78 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~----~~~~~~~v~VGDs~----------------~Di~ 137 (176)
T TIGR00213 78 RDVDLDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKEL----HIDMAQSYMVGDKL----------------EDMQ 137 (176)
T ss_pred cCCCccEEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHc----CcChhhEEEEcCCH----------------HHHH
Confidence 8888864 4443 24568999999999999996 79999999999998 8999
Q ss_pred HHHhCCCCc
Q psy4598 172 FAFNLNLAF 180 (369)
Q Consensus 172 ~A~n~Gi~f 180 (369)
+|+++|+++
T Consensus 138 aA~~aG~~~ 146 (176)
T TIGR00213 138 AGVAAKVKT 146 (176)
T ss_pred HHHHCCCcE
Confidence 999999997
No 9
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.90 E-value=6.5e-23 Score=176.64 Aligned_cols=134 Identities=28% Similarity=0.423 Sum_probs=115.6
Q ss_pred eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHH---HHHHHHHHH
Q psy4598 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQ---AKAEKIIKS 102 (369)
Q Consensus 26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~---~~i~~~l~~ 102 (369)
++++||+||||+.+.++. |.....+|+ ++||+.+.|+.|+++||+++|+||+++.+++++..+.++ ..+..+++.
T Consensus 1 ~~~~~d~dgtl~~~~~~~-~~~~~~~~~-~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSD-YPRSLDDWQ-LRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQ 78 (147)
T ss_pred CeEEEeCCCceeccCCcc-cCCCHHHeE-EcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHh
Confidence 578999999999999876 888888887 699999999999999999999999988877777766665 467778899
Q ss_pred cCCCeE-EEEe----cCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCC
Q psy4598 103 LNVPVQ-MFVA----TQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLN 177 (369)
Q Consensus 103 l~i~~~-~~~~----~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~G 177 (369)
+|+++. .|.+ .+...++||+|+||+++++++ ++++++|+||||+. .|+++|+|+|
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~----~~~~~e~i~IGDs~----------------~Di~~A~~~G 138 (147)
T TIGR01656 79 LGVAVDGVLFCPHHPADNCSCRKPKPGLILEALKRL----GVDASRSLVVGDRL----------------RDLQAARNAG 138 (147)
T ss_pred CCCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHc----CCChHHEEEEcCCH----------------HHHHHHHHCC
Confidence 999864 3443 234567899999999999986 68999999999998 8999999999
Q ss_pred CCcc
Q psy4598 178 LAFF 181 (369)
Q Consensus 178 i~f~ 181 (369)
|+++
T Consensus 139 i~~v 142 (147)
T TIGR01656 139 LAAV 142 (147)
T ss_pred CCEE
Confidence 9986
No 10
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.86 E-value=2.1e-21 Score=172.86 Aligned_cols=137 Identities=20% Similarity=0.275 Sum_probs=115.5
Q ss_pred CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHH---HHHHHHHH
Q psy4598 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDF---QAKAEKII 100 (369)
Q Consensus 24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~---~~~i~~~l 100 (369)
+.|+++||+||||+.+. ..|.....+|. ++||+.+.|++|+++|++++|+||+++++++.+....+ .+.+..++
T Consensus 2 ~~~~~~~d~~~t~~~~~--~~~~~~~~~~~-~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l 78 (181)
T PRK08942 2 SMKAIFLDRDGVINVDS--DGYVKSPDEWI-PIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSL 78 (181)
T ss_pred CccEEEEECCCCcccCC--ccccCCHHHeE-ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHH
Confidence 57999999999998664 46888899998 69999999999999999999999999887777665544 35667778
Q ss_pred HHcCCCeEE-EEec----CCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHh
Q psy4598 101 KSLNVPVQM-FVAT----QYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFN 175 (369)
Q Consensus 101 ~~l~i~~~~-~~~~----~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n 175 (369)
+.+|+.|+. +.+. +....+||+|.||..+++++ ++++++++||||+. .|+++|++
T Consensus 79 ~~~g~~f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l----~~~~~~~~~VgDs~----------------~Di~~A~~ 138 (181)
T PRK08942 79 ADRGGRLDGIYYCPHHPEDGCDCRKPKPGMLLSIAERL----NIDLAGSPMVGDSL----------------RDLQAAAA 138 (181)
T ss_pred HHcCCccceEEECCCCCCCCCcCCCCCHHHHHHHHHHc----CCChhhEEEEeCCH----------------HHHHHHHH
Confidence 888987764 4432 33568999999999999986 78999999999998 89999999
Q ss_pred CCCCccCc
Q psy4598 176 LNLAFFTP 183 (369)
Q Consensus 176 ~Gi~f~~p 183 (369)
+|+.++..
T Consensus 139 aG~~~i~v 146 (181)
T PRK08942 139 AGVTPVLV 146 (181)
T ss_pred CCCeEEEE
Confidence 99998654
No 11
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.83 E-value=7.5e-20 Score=154.27 Aligned_cols=127 Identities=35% Similarity=0.522 Sum_probs=102.6
Q ss_pred eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC
Q psy4598 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV 105 (369)
Q Consensus 26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i 105 (369)
|+++||+||||+.. ..|.. ...+..++|++.+.|++|+++|++++|+||++++.+++ .+...+..+++.+++
T Consensus 1 k~~~~D~dgtL~~~---~~~~~-~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~----~~~~~~~~~l~~~~l 72 (132)
T TIGR01662 1 KGVVLDLDGTLTDD---VPYVD-DEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGK----FSSGRVARRLEELGV 72 (132)
T ss_pred CEEEEeCCCceecC---CCCCC-CHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccH----HHHHHHHHHHHHCCC
Confidence 68999999999942 33444 33444579999999999999999999999987665442 145667888999999
Q ss_pred CeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeC-ccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598 106 PVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGD-AAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 106 ~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD-~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~ 181 (369)
++...+.+. ..+||+|++|++++++++ ++++++++|||| .. .|+.+|+++|++++
T Consensus 73 ~~~~~~~~~--~~~KP~~~~~~~~~~~~~---~~~~~~~v~IGD~~~----------------~Di~~A~~~Gi~~i 128 (132)
T TIGR01662 73 PIDVLYACP--HCRKPKPGMFLEALKRFN---EIDPEESVYVGDQDL----------------TDLQAAKRAGLAFI 128 (132)
T ss_pred CEEEEEECC--CCCCCChHHHHHHHHHcC---CCChhheEEEcCCCc----------------ccHHHHHHCCCeEE
Confidence 876544444 578999999999999851 389999999999 56 89999999999985
No 12
>PRK06769 hypothetical protein; Validated
Probab=99.81 E-value=1.2e-19 Score=160.64 Aligned_cols=131 Identities=22% Similarity=0.273 Sum_probs=102.8
Q ss_pred CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL 103 (369)
Q Consensus 24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l 103 (369)
.-|+++||+||||+.. .+.....++. ++|||.+.|++|+++||+++|+||++++..++.....+ ...++.+
T Consensus 3 ~~~~~~~d~d~~~~~~----~~~~~~~~~~-~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~----~~~l~~~ 73 (173)
T PRK06769 3 NIQAIFIDRDGTIGGD----TTIHYPGSFT-LFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADF----VQELKGF 73 (173)
T ss_pred CCcEEEEeCCCcccCC----CCCCCHHHeE-ECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHH----HHHHHhC
Confidence 3589999999999754 3344445666 69999999999999999999999998776665543333 2335666
Q ss_pred CCCeEEEEe----cCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCC
Q psy4598 104 NVPVQMFVA----TQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLA 179 (369)
Q Consensus 104 ~i~~~~~~~----~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~ 179 (369)
|+. .++.+ .+....+||+|+||..+++++ ++++++|+||||+. .|+++|+++|++
T Consensus 74 g~~-~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l----~~~p~~~i~IGD~~----------------~Di~aA~~aGi~ 132 (173)
T PRK06769 74 GFD-DIYLCPHKHGDGCECRKPSTGMLLQAAEKH----GLDLTQCAVIGDRW----------------TDIVAAAKVNAT 132 (173)
T ss_pred CcC-EEEECcCCCCCCCCCCCCCHHHHHHHHHHc----CCCHHHeEEEcCCH----------------HHHHHHHHCCCe
Confidence 653 33443 344578999999999999996 68999999999998 899999999999
Q ss_pred ccCch
Q psy4598 180 FFTPE 184 (369)
Q Consensus 180 f~~pe 184 (369)
++...
T Consensus 133 ~i~v~ 137 (173)
T PRK06769 133 TILVR 137 (173)
T ss_pred EEEEe
Confidence 97553
No 13
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.72 E-value=1.5e-17 Score=156.43 Aligned_cols=97 Identities=11% Similarity=0.138 Sum_probs=85.6
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++||+.+.|++|++.||+++|+||++ ...+..+++.+|+ +|+.+++.++...+||+|.+|..++++
T Consensus 110 l~pg~~e~L~~L~~~g~~l~I~Tn~~------------~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~ 177 (260)
T PLN03243 110 LRPGSREFVQALKKHEIPIAVASTRP------------RRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAER 177 (260)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEeCcC------------HHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHH
Confidence 58999999999999999999999964 2345667788888 488888888888899999999999999
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
+ ++++++|+||||+. .|+++|+++||+++..
T Consensus 178 l----~~~p~~~l~IgDs~----------------~Di~aA~~aG~~~i~v 208 (260)
T PLN03243 178 L----GFIPERCIVFGNSN----------------SSVEAAHDGCMKCVAV 208 (260)
T ss_pred h----CCChHHeEEEcCCH----------------HHHHHHHHcCCEEEEE
Confidence 6 79999999999999 8999999999998644
No 14
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.71 E-value=1.6e-17 Score=155.29 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=85.9
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++||+.+.|+.|+++|++++|+||.+ ...++..++.+|+. |+.+++.++....||+|.+|..++++
T Consensus 109 l~pgv~e~L~~L~~~g~~l~I~Tn~~------------~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~ 176 (248)
T PLN02770 109 PLNGLYKLKKWIEDRGLKRAAVTNAP------------RENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEV 176 (248)
T ss_pred cCccHHHHHHHHHHcCCeEEEEeCCC------------HHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHH
Confidence 58999999999999999999999953 33456677888884 88889998888899999999999999
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
+ ++++++++||||+. .|+++|+++|++++..
T Consensus 177 ~----~~~~~~~l~vgDs~----------------~Di~aA~~aGi~~i~v 207 (248)
T PLN02770 177 L----KVSKDHTFVFEDSV----------------SGIKAGVAAGMPVVGL 207 (248)
T ss_pred h----CCChhHEEEEcCCH----------------HHHHHHHHCCCEEEEE
Confidence 6 68999999999999 8999999999999644
No 15
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.71 E-value=2.4e-17 Score=151.32 Aligned_cols=100 Identities=23% Similarity=0.293 Sum_probs=86.7
Q ss_pred cccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHH
Q psy4598 54 LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQ 131 (369)
Q Consensus 54 ~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~ 131 (369)
.++||+.++|..|+++||+++|+||.+ ...+..+++.+|+ +|+++++......+||+|.++..+++
T Consensus 89 ~~~~gv~e~L~~L~~~g~~l~i~T~k~------------~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~ 156 (220)
T COG0546 89 RLFPGVKELLAALKSAGYKLGIVTNKP------------ERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLE 156 (220)
T ss_pred ccCCCHHHHHHHHHhCCCeEEEEeCCc------------HHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHH
Confidence 369999999999999999999999954 2345677888887 58888887788899999999999999
Q ss_pred HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCchh
Q psy4598 132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPEQ 185 (369)
Q Consensus 132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe~ 185 (369)
.+ ++++++++||||+. .|+++|+|+|++++...-
T Consensus 157 ~~----~~~~~~~l~VGDs~----------------~Di~aA~~Ag~~~v~v~~ 190 (220)
T COG0546 157 KL----GLDPEEALMVGDSL----------------NDILAAKAAGVPAVGVTW 190 (220)
T ss_pred Hh----CCChhheEEECCCH----------------HHHHHHHHcCCCEEEEEC
Confidence 96 57778999999999 899999999999876543
No 16
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.70 E-value=5.6e-17 Score=137.97 Aligned_cols=95 Identities=33% Similarity=0.513 Sum_probs=83.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch--------------------hHHHHHHHHHHHHhCCCcEEEeCCCC
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG--------------------SWQKCVSVMKAALDSGLSVVVDNTNP 333 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------------------~~~~~~~~~~~~l~~g~~vIiD~tn~ 333 (369)
+|+|+|+|||||||+++.|.+.+++.+|+.|.++ .++.+...+...++.|.++|+|++|.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~~~ 80 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNTNL 80 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccCcC
Confidence 6899999999999999999999999999999974 13345567778889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 334 DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 334 ~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
..+.|..+.++++++++++.+|+|++|.+++.+|+
T Consensus 81 ~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~ 115 (143)
T PF13671_consen 81 SREERARLRELARKHGYPVRVVYLDAPEETLRERL 115 (143)
T ss_dssp SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHH
Confidence 99999999999999999999999999999999986
No 17
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.70 E-value=3e-17 Score=151.50 Aligned_cols=97 Identities=22% Similarity=0.238 Sum_probs=83.6
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++||+.+.|+.|+++|++++|+||++. ..+..+++.+|+. |+++++.+....+||+|.+|.+++++
T Consensus 96 ~~pg~~~~L~~L~~~g~~l~i~Tn~~~------------~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~ 163 (229)
T PRK13226 96 LFDGVEGMLQRLECAGCVWGIVTNKPE------------YLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAER 163 (229)
T ss_pred eCCCHHHHHHHHHHCCCeEEEECCCCH------------HHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHH
Confidence 689999999999999999999999541 2334567778873 77788887777899999999999998
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
+ ++++++|+||||+. .|+++|+++|++++..
T Consensus 164 l----~~~p~~~l~IGDs~----------------~Di~aA~~aG~~~i~v 194 (229)
T PRK13226 164 I----GVAPTDCVYVGDDE----------------RDILAARAAGMPSVAA 194 (229)
T ss_pred h----CCChhhEEEeCCCH----------------HHHHHHHHCCCcEEEE
Confidence 6 78999999999998 8999999999999754
No 18
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.69 E-value=1e-16 Score=146.37 Aligned_cols=99 Identities=18% Similarity=0.254 Sum_probs=84.3
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++||+.+.|++|+++|++++|+||.. ...+...++.+|+ +|+.++++++...+||+|.+|..++++
T Consensus 95 ~~~g~~~~L~~L~~~g~~~~i~Tn~~------------~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~ 162 (221)
T TIGR02253 95 VYPGVRDTLMELRESGYRLGIITDGL------------PVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKR 162 (221)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEeCCc------------hHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHH
Confidence 68999999999999999999999943 1233455677887 488888888888999999999999998
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE 184 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe 184 (369)
+ ++++++++||||+.. .|+.+|+++|++++...
T Consensus 163 ~----~~~~~~~~~igDs~~---------------~di~~A~~aG~~~i~~~ 195 (221)
T TIGR02253 163 L----GVKPEEAVMVGDRLD---------------KDIKGAKNLGMKTVWIN 195 (221)
T ss_pred c----CCChhhEEEECCChH---------------HHHHHHHHCCCEEEEEC
Confidence 6 789999999999972 69999999999997543
No 19
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.69 E-value=5.7e-17 Score=147.77 Aligned_cols=97 Identities=19% Similarity=0.142 Sum_probs=85.2
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++||+.+.|+.|+++|++++|+||.. ...+..+++.+|+. |+.+++.+....+||+|.++..++++
T Consensus 83 ~~~g~~~~l~~L~~~g~~~~i~S~~~------------~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~ 150 (214)
T PRK13288 83 EYETVYETLKTLKKQGYKLGIVTTKM------------RDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALEL 150 (214)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCC------------HHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHH
Confidence 57999999999999999999999943 33456677888883 88888888888999999999999998
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
+ ++++++++||||+. .|+++|+++|++++..
T Consensus 151 ~----~~~~~~~~~iGDs~----------------~Di~aa~~aG~~~i~v 181 (214)
T PRK13288 151 L----GAKPEEALMVGDNH----------------HDILAGKNAGTKTAGV 181 (214)
T ss_pred c----CCCHHHEEEECCCH----------------HHHHHHHHCCCeEEEE
Confidence 6 68899999999999 8999999999998654
No 20
>COG4639 Predicted kinase [General function prediction only]
Probab=99.69 E-value=2e-16 Score=134.22 Aligned_cols=97 Identities=25% Similarity=0.387 Sum_probs=86.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------------hHHHHHHHHHHHHhCCCcEEEeCCC
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------------SWQKCVSVMKAALDSGLSVVVDNTN 332 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~~~~~~~~~~~l~~g~~vIiD~tn 332 (369)
|+.+++|+|+|||||||+|+...... ..|+.|+++ .|+.+.+.++..+..|+..|+|+||
T Consensus 1 ~~~LvvL~G~~~sGKsT~ak~n~~~~--~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidAtn 78 (168)
T COG4639 1 MRILVVLRGASGSGKSTFAKENFLQN--YVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDATN 78 (168)
T ss_pred CceEEEEecCCCCchhHHHHHhCCCc--ceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 46799999999999999999977654 456666653 3677788889999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598 333 PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK 369 (369)
Q Consensus 333 ~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~ 369 (369)
..++.|+.++.+|+++|+....++|++|.++|.+||+
T Consensus 79 ~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk 115 (168)
T COG4639 79 LRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNK 115 (168)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhh
Confidence 9999999999999999999999999999999999984
No 21
>PRK11587 putative phosphatase; Provisional
Probab=99.68 E-value=5.9e-17 Score=148.28 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=81.5
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC-eEEEEecCCCCCCCCchhHHHHHHHHh
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP-VQMFVATQYDRYRKPVPGMWEYLSQEK 133 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~-~~~~~~~~~~~~rKP~~gm~~~~~~~~ 133 (369)
++||+.+.|+.|+++|++++|+||.+. ......++..++. ++.+++.++...+||+|.+|..+++++
T Consensus 84 ~~pg~~e~L~~L~~~g~~~~ivTn~~~------------~~~~~~l~~~~l~~~~~i~~~~~~~~~KP~p~~~~~~~~~~ 151 (218)
T PRK11587 84 ALPGAIALLNHLNKLGIPWAIVTSGSV------------PVASARHKAAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLL 151 (218)
T ss_pred eCcCHHHHHHHHHHcCCcEEEEcCCCc------------hHHHHHHHhcCCCCccEEEEHHHhcCCCCCcHHHHHHHHHc
Confidence 589999999999999999999999531 1223445666663 567778777778999999999999986
Q ss_pred cCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 134 NGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 134 ~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
++.|++|+||||+. .|+++|+++|++++..
T Consensus 152 ----g~~p~~~l~igDs~----------------~di~aA~~aG~~~i~v 181 (218)
T PRK11587 152 ----GLAPQECVVVEDAP----------------AGVLSGLAAGCHVIAV 181 (218)
T ss_pred ----CCCcccEEEEecch----------------hhhHHHHHCCCEEEEE
Confidence 78999999999999 8999999999998654
No 22
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.68 E-value=6.3e-17 Score=145.61 Aligned_cols=96 Identities=16% Similarity=0.261 Sum_probs=84.7
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++|++.+.|++|+++||+++|+||.+ ...+..+++.+|+ +|+.+++++....+||+|.+|..++++
T Consensus 93 ~~~~~~~~L~~L~~~g~~~~i~Sn~~------------~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~ 160 (198)
T TIGR01428 93 PHPDVPAGLRALKERGYRLAILSNGS------------PAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEA 160 (198)
T ss_pred CCCCHHHHHHHHHHCCCeEEEEeCCC------------HHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHH
Confidence 57999999999999999999999953 2345566788888 588888888888999999999999998
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT 182 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~ 182 (369)
+ +++|++++||||+. .|+++|+++||+++.
T Consensus 161 ~----~~~p~~~~~vgD~~----------------~Di~~A~~~G~~~i~ 190 (198)
T TIGR01428 161 L----GVPPDEVLFVASNP----------------WDLGGAKKFGFKTAW 190 (198)
T ss_pred h----CCChhhEEEEeCCH----------------HHHHHHHHCCCcEEE
Confidence 6 78999999999999 899999999999864
No 23
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.68 E-value=8.3e-17 Score=157.65 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=87.0
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++||+.+.|+.|+++|++++|+||.+ ...++.+++.+|+ +|+.+++.++....||+|.+|.+++++
T Consensus 217 l~pGa~ElL~~Lk~~GiklaIaSn~~------------~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~ 284 (381)
T PLN02575 217 LRTGSQEFVNVLMNYKIPMALVSTRP------------RKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQL 284 (381)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCC------------HHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHH
Confidence 58999999999999999999999943 3456777888998 489999998888899999999999999
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
+ ++++++|+||||+. .|+++|+++||+++..
T Consensus 285 l----gl~Peecl~IGDS~----------------~DIeAAk~AGm~~IgV 315 (381)
T PLN02575 285 L----NFIPERCIVFGNSN----------------QTVEAAHDARMKCVAV 315 (381)
T ss_pred c----CCCcccEEEEcCCH----------------HHHHHHHHcCCEEEEE
Confidence 6 79999999999998 8999999999999654
No 24
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.67 E-value=2.4e-16 Score=142.35 Aligned_cols=95 Identities=16% Similarity=0.228 Sum_probs=81.7
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++||+.++|+.|+++|++++|+||... .+...++.+|+ .|+.++++....++||+|.+|.+++++
T Consensus 106 ~~~g~~~~l~~L~~~g~~~~i~Sn~~~-------------~~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~ 172 (203)
T TIGR02252 106 VYPDAIKLLKDLRERGLILGVISNFDS-------------RLRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALER 172 (203)
T ss_pred eCcCHHHHHHHHHHCCCEEEEEeCCch-------------hHHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHH
Confidence 589999999999999999999999531 12445677887 588888888888999999999999998
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~ 181 (369)
+ ++++++++||||+.. .|+++|+++|++++
T Consensus 173 ~----~~~~~~~~~IgD~~~---------------~Di~~A~~aG~~~i 202 (203)
T TIGR02252 173 A----GISPEEALHIGDSLR---------------NDYQGARAAGWRAL 202 (203)
T ss_pred c----CCChhHEEEECCCch---------------HHHHHHHHcCCeee
Confidence 6 789999999999962 69999999999875
No 25
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.66 E-value=1.6e-16 Score=143.77 Aligned_cols=98 Identities=18% Similarity=0.227 Sum_probs=85.1
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++||+.+.|++|+++|++++|+||.+ ...+...++.+|+ .|+.++++++...+||+|.+|..++++
T Consensus 76 ~~~g~~~~L~~L~~~g~~~~i~Sn~~------------~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~ 143 (205)
T TIGR01454 76 VFPGVPELLAELRADGVGTAIATGKS------------GPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRL 143 (205)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCc------------hHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHH
Confidence 58999999999999999999999953 2234566788888 488888888778899999999999998
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE 184 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe 184 (369)
+ ++++++++||||+. .|+++|+++||+++...
T Consensus 144 ~----~~~~~~~l~igD~~----------------~Di~aA~~~Gi~~i~~~ 175 (205)
T TIGR01454 144 L----DVPPEDAVMVGDAV----------------TDLASARAAGTATVAAL 175 (205)
T ss_pred c----CCChhheEEEcCCH----------------HHHHHHHHcCCeEEEEE
Confidence 6 78999999999998 89999999999987543
No 26
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.66 E-value=2.3e-16 Score=145.24 Aligned_cols=94 Identities=12% Similarity=0.254 Sum_probs=81.4
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++||+.+.|+.|+++|++++|+||.+ ...+...++.+|+ .|+.+++++....+||+|.+|+.++++
T Consensus 94 ~~~g~~e~L~~Lk~~g~~~~i~Tn~~------------~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~ 161 (224)
T PRK14988 94 LREDTVPFLEALKASGKRRILLTNAH------------PHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEH 161 (224)
T ss_pred cCCCHHHHHHHHHhCCCeEEEEeCcC------------HHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHH
Confidence 58999999999999999999999943 2234445677777 378788888788899999999999998
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF 180 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f 180 (369)
+ ++++++|+||||+. .|+++|+++||++
T Consensus 162 ~----~~~p~~~l~igDs~----------------~di~aA~~aG~~~ 189 (224)
T PRK14988 162 T----GLKAERTLFIDDSE----------------PILDAAAQFGIRY 189 (224)
T ss_pred c----CCChHHEEEEcCCH----------------HHHHHHHHcCCeE
Confidence 6 78999999999998 8999999999986
No 27
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.65 E-value=6.1e-16 Score=145.99 Aligned_cols=98 Identities=12% Similarity=0.025 Sum_probs=80.5
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC---CCeEEEEecCCCCCCCCchhHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN---VPVQMFVATQYDRYRKPVPGMWEYLSQ 131 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~---i~~~~~~~~~~~~~rKP~~gm~~~~~~ 131 (369)
++||+.+.|+.|+++|++++|+||.+ +..+..+++.++ +.++.+++.++....||+|.+|..+++
T Consensus 102 ~~pg~~elL~~L~~~g~~l~I~T~~~------------~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~ 169 (267)
T PRK13478 102 PIPGVLEVIAALRARGIKIGSTTGYT------------REMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAI 169 (267)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEcCCc------------HHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHH
Confidence 58999999999999999999999943 122344445443 335788888888889999999999999
Q ss_pred HhcCCcccc-CCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598 132 EKNGDLAID-ISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE 184 (369)
Q Consensus 132 ~~~~~~~i~-~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe 184 (369)
++ +++ +++|+||||+. .|+++|+++|++++...
T Consensus 170 ~l----~~~~~~e~l~IGDs~----------------~Di~aA~~aG~~~i~v~ 203 (267)
T PRK13478 170 EL----GVYDVAACVKVDDTV----------------PGIEEGLNAGMWTVGVI 203 (267)
T ss_pred Hc----CCCCCcceEEEcCcH----------------HHHHHHHHCCCEEEEEc
Confidence 86 675 68999999999 89999999999997653
No 28
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.65 E-value=2.3e-16 Score=143.22 Aligned_cols=98 Identities=19% Similarity=0.243 Sum_probs=85.0
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++||+.+.|+.|+++|++++|+||.+ ...+..+++.+|+ .|+.+++.+.....||+|.+|..++++
T Consensus 86 ~~~g~~~~L~~l~~~g~~~~i~S~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~ 153 (213)
T TIGR01449 86 VFPGVEATLGALRAKGLRLGLVTNKP------------TPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAER 153 (213)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCC------------HHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHH
Confidence 68999999999999999999999943 2345666788887 478888888778899999999999999
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE 184 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe 184 (369)
+ ++++++++||||+. .|+++|+++|++++...
T Consensus 154 ~----~~~~~~~~~igDs~----------------~d~~aa~~aG~~~i~v~ 185 (213)
T TIGR01449 154 L----GVAPQQMVYVGDSR----------------VDIQAARAAGCPSVLLT 185 (213)
T ss_pred c----CCChhHeEEeCCCH----------------HHHHHHHHCCCeEEEEc
Confidence 6 68999999999998 89999999999997543
No 29
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.64 E-value=6.7e-16 Score=144.42 Aligned_cols=97 Identities=14% Similarity=0.042 Sum_probs=81.7
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--C-eEEEEecCCCCCCCCchhHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--P-VQMFVATQYDRYRKPVPGMWEYLSQ 131 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~-~~~~~~~~~~~~rKP~~gm~~~~~~ 131 (369)
++||+.+.|+.|+++|++++|+||.+ ...+..+++.+|+ . ++.+++.++...+||+|.+|..+++
T Consensus 100 ~~pg~~e~L~~L~~~g~~l~IvT~~~------------~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~ 167 (253)
T TIGR01422 100 PIPGVIEVIAYLRARGIKIGSTTGYT------------REMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAI 167 (253)
T ss_pred cCCCHHHHHHHHHHCCCeEEEECCCc------------HHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHH
Confidence 58999999999999999999999942 2334555666555 2 4788888888899999999999999
Q ss_pred HhcCCcccc-CCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 132 EKNGDLAID-ISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 132 ~~~~~~~i~-~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
++ ++. +++|+||||+. .|+++|+++||+++..
T Consensus 168 ~l----~~~~~~~~l~IGDs~----------------~Di~aA~~aGi~~i~v 200 (253)
T TIGR01422 168 EL----GVYDVAACVKVGDTV----------------PDIEEGRNAGMWTVGL 200 (253)
T ss_pred Hc----CCCCchheEEECCcH----------------HHHHHHHHCCCeEEEE
Confidence 86 674 89999999999 8999999999999754
No 30
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.64 E-value=4.1e-16 Score=142.54 Aligned_cols=97 Identities=16% Similarity=0.220 Sum_probs=82.8
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC----eEEEEecCCCCCCCCchhHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP----VQMFVATQYDRYRKPVPGMWEYLS 130 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~----~~~~~~~~~~~~rKP~~gm~~~~~ 130 (369)
++||+.+.|+.|+++|++++|+||.. ...+..+++.+|+. |+.+++.++....||+|.+|..++
T Consensus 88 l~~G~~~~L~~L~~~g~~~~ivT~~~------------~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~ 155 (220)
T TIGR03351 88 ALPGAEEAFRSLRSSGIKVALTTGFD------------RDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAM 155 (220)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEeCCc------------hHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHH
Confidence 78999999999999999999999942 23445566777764 788888888788999999999999
Q ss_pred HHhcCCcccc-CCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc-cCc
Q psy4598 131 QEKNGDLAID-ISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF-FTP 183 (369)
Q Consensus 131 ~~~~~~~~i~-~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f-~~p 183 (369)
+++ ++. +++++||||+. .|+++|+++||.+ +..
T Consensus 156 ~~~----~~~~~~~~~~igD~~----------------~Di~aa~~aG~~~~i~~ 190 (220)
T TIGR03351 156 ELT----GVQDVQSVAVAGDTP----------------NDLEAGINAGAGAVVGV 190 (220)
T ss_pred HHc----CCCChhHeEEeCCCH----------------HHHHHHHHCCCCeEEEE
Confidence 986 676 79999999999 8999999999998 543
No 31
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.63 E-value=3.7e-16 Score=143.31 Aligned_cols=97 Identities=12% Similarity=0.164 Sum_probs=84.5
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++||+.+.|+.|+++|++++|+||.. ...++.+++.+++ .|+.+++.+....+||+|.+|..++++
T Consensus 93 ~~~g~~~~l~~l~~~g~~~~i~S~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~ 160 (222)
T PRK10826 93 LLPGVREALALCKAQGLKIGLASASP------------LHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAK 160 (222)
T ss_pred CCCCHHHHHHHHHHCCCeEEEEeCCc------------HHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHH
Confidence 68999999999999999999999943 2345566777887 478888888888999999999999999
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
+ ++++++|+||||+. .|+++|+++|++++..
T Consensus 161 ~----~~~~~~~~~igDs~----------------~Di~aA~~aG~~~i~v 191 (222)
T PRK10826 161 L----GVDPLTCVALEDSF----------------NGMIAAKAARMRSIVV 191 (222)
T ss_pred c----CCCHHHeEEEcCCh----------------hhHHHHHHcCCEEEEe
Confidence 6 78999999999999 8999999999998643
No 32
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.63 E-value=5.3e-16 Score=136.98 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=80.1
Q ss_pred cccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHH
Q psy4598 54 LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQ 131 (369)
Q Consensus 54 ~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~ 131 (369)
.++|++.+.|+.|+++|++++|+||... .. ..++..+|+ .|+.+++++....+||+|.+|+.+++
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~---------~~----~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~ 151 (183)
T TIGR01509 85 KPLPGVEPLLEALRARGKKLALLTNSPR---------DH----AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALK 151 (183)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCch---------HH----HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHH
Confidence 3579999999999999999999999541 11 223344777 38888888888899999999999999
Q ss_pred HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598 132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~ 181 (369)
++ ++++++++||||+. .|+++|+++|++++
T Consensus 152 ~~----~~~~~~~~~vgD~~----------------~di~aA~~~G~~~i 181 (183)
T TIGR01509 152 KL----GLKPEECLFVDDSP----------------AGIEAAKAAGMHTV 181 (183)
T ss_pred Hc----CCCcceEEEEcCCH----------------HHHHHHHHcCCEEE
Confidence 86 68999999999999 89999999999876
No 33
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.63 E-value=3.9e-16 Score=138.44 Aligned_cols=94 Identities=16% Similarity=0.187 Sum_probs=81.9
Q ss_pred cccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHH
Q psy4598 54 LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQ 131 (369)
Q Consensus 54 ~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~ 131 (369)
.++||+.+.|+.|+++|++++|+||+ ..+..+++.+|+. |+.+++.+....+||+|.++..+++
T Consensus 88 ~~~~g~~~~l~~l~~~g~~i~i~S~~--------------~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~ 153 (185)
T TIGR02009 88 EVLPGIENFLKRLKKKGIAVGLGSSS--------------KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAE 153 (185)
T ss_pred CCCcCHHHHHHHHHHcCCeEEEEeCc--------------hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHH
Confidence 36899999999999999999999993 1245567778873 8888888878889999999999999
Q ss_pred HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598 132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~ 181 (369)
++ ++++++++||||+. .|+++|+++||+++
T Consensus 154 ~~----~~~~~~~v~IgD~~----------------~di~aA~~~G~~~i 183 (185)
T TIGR02009 154 LL----GVSPNECVVFEDAL----------------AGVQAARAAGMFAV 183 (185)
T ss_pred Hc----CCCHHHeEEEeCcH----------------hhHHHHHHCCCeEe
Confidence 86 68899999999998 89999999999876
No 34
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.62 E-value=5.6e-16 Score=137.99 Aligned_cols=95 Identities=18% Similarity=0.121 Sum_probs=80.3
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++|+ .+.|..|++. ++++|+||.+ ...+...++.+|+ +|+.+++.++...+||+|.+|+.++++
T Consensus 89 ~~~~-~e~L~~L~~~-~~l~I~T~~~------------~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~ 154 (188)
T PRK10725 89 PLPL-IEVVKAWHGR-RPMAVGTGSE------------SAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQL 154 (188)
T ss_pred CccH-HHHHHHHHhC-CCEEEEcCCc------------hHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHH
Confidence 3564 5889998765 9999999943 2345667788888 489899998888999999999999999
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
+ ++++++++||||+. .|+++|+++|++++..
T Consensus 155 ~----~~~~~~~l~igDs~----------------~di~aA~~aG~~~i~~ 185 (188)
T PRK10725 155 M----GVQPTQCVVFEDAD----------------FGIQAARAAGMDAVDV 185 (188)
T ss_pred c----CCCHHHeEEEeccH----------------hhHHHHHHCCCEEEee
Confidence 6 68899999999998 8999999999999764
No 35
>PRK09449 dUMP phosphatase; Provisional
Probab=99.61 E-value=1.2e-15 Score=139.78 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=80.4
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++||+.+.|+.|+ +||+++|+||.. ...+...++.+|+ .|+.++++++...+||+|.+|+.++++
T Consensus 96 ~~~g~~~~L~~L~-~~~~~~i~Tn~~------------~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~ 162 (224)
T PRK09449 96 PLPGAVELLNALR-GKVKMGIITNGF------------TELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQ 162 (224)
T ss_pred cCccHHHHHHHHH-hCCeEEEEeCCc------------HHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHH
Confidence 6899999999999 689999999932 2234556778887 488888888888999999999999998
Q ss_pred hcCCcccc-CCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598 133 KNGDLAID-ISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT 182 (369)
Q Consensus 133 ~~~~~~i~-~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~ 182 (369)
+ ++. +++++||||+.. .|+++|+++||+++.
T Consensus 163 ~----~~~~~~~~~~vgD~~~---------------~Di~~A~~aG~~~i~ 194 (224)
T PRK09449 163 M----GNPDRSRVLMVGDNLH---------------SDILGGINAGIDTCW 194 (224)
T ss_pred c----CCCCcccEEEEcCCcH---------------HHHHHHHHCCCcEEE
Confidence 6 564 478999999972 599999999999864
No 36
>PLN02940 riboflavin kinase
Probab=99.61 E-value=8.5e-16 Score=152.20 Aligned_cols=97 Identities=12% Similarity=0.175 Sum_probs=82.6
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH-HcCC--CeEEEEecCCCCCCCCchhHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK-SLNV--PVQMFVATQYDRYRKPVPGMWEYLSQ 131 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~-~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~ 131 (369)
++||+.+.|+.|+++|++++|+||.+ ...+...++ .+|+ +|+.+++.++...+||+|.+|..+++
T Consensus 94 l~pGv~elL~~Lk~~g~~l~IvTn~~------------~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~ 161 (382)
T PLN02940 94 ALPGANRLIKHLKSHGVPMALASNSP------------RANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAK 161 (382)
T ss_pred CCcCHHHHHHHHHHCCCcEEEEeCCc------------HHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHH
Confidence 57999999999999999999999953 122334444 4566 48899999988899999999999999
Q ss_pred HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
++ ++++++|+||||+. .|+++|+++||+++..
T Consensus 162 ~l----gv~p~~~l~VGDs~----------------~Di~aA~~aGi~~I~v 193 (382)
T PLN02940 162 RL----NVEPSNCLVIEDSL----------------PGVMAGKAAGMEVIAV 193 (382)
T ss_pred Hc----CCChhHEEEEeCCH----------------HHHHHHHHcCCEEEEE
Confidence 96 78999999999999 8999999999998543
No 37
>PRK06762 hypothetical protein; Provisional
Probab=99.60 E-value=6.2e-15 Score=129.07 Aligned_cols=99 Identities=14% Similarity=0.167 Sum_probs=84.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccC--CcEEEeCCcchh-------------HHHHHHHHHHHHhCCCcEEEeCCCCCH
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPL--NYTTVNRDTLGS-------------WQKCVSVMKAALDSGLSVVVDNTNPDK 335 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~--~~~~i~~D~~~~-------------~~~~~~~~~~~l~~g~~vIiD~tn~~~ 335 (369)
||++|+|+|+|||||||+|+.|++.+ ++.+++.|.++. ++.+...++..++.|.+||+|+++...
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~vild~~~~~~ 80 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQLVRYGLGHCEFVILEGILNSD 80 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCCCCcCHHHHHHHHHHHHhCCCEEEEchhhccH
Confidence 68999999999999999999999987 688899998852 223345555667889999999998888
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598 336 ESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK 369 (369)
Q Consensus 336 ~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~ 369 (369)
..|..+..+++.+++++.++|+++|.++|.+|++
T Consensus 81 ~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~ 114 (166)
T PRK06762 81 RYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHS 114 (166)
T ss_pred hHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHh
Confidence 8888888899999999999999999999999973
No 38
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.60 E-value=2.8e-15 Score=142.05 Aligned_cols=97 Identities=16% Similarity=0.302 Sum_probs=83.4
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++||+.+.|+.|+++|++++|+||.+ ...+..+++.+++ .|+.+++.+.....||+|.+++.++++
T Consensus 102 ~~~g~~e~L~~Lk~~g~~l~ivTn~~------------~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~ 169 (272)
T PRK13223 102 VYPGVRDTLKWLKKQGVEMALITNKP------------ERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKM 169 (272)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCc------------HHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHH
Confidence 58999999999999999999999953 1245566777777 378788887777899999999999998
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
+ ++++++++||||+. .|+++|+++||+++..
T Consensus 170 ~----g~~~~~~l~IGD~~----------------~Di~aA~~aGi~~i~v 200 (272)
T PRK13223 170 A----GVPPSQSLFVGDSR----------------SDVLAAKAAGVQCVAL 200 (272)
T ss_pred h----CCChhHEEEECCCH----------------HHHHHHHHCCCeEEEE
Confidence 6 68999999999998 8999999999998654
No 39
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.59 E-value=7.6e-16 Score=136.57 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=81.6
Q ss_pred cccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHH
Q psy4598 54 LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQ 131 (369)
Q Consensus 54 ~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~ 131 (369)
.++||+.+.|+.|+++|++++|+||... ....++.+|+. |+.++++++....||+|.+|+.+++
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~--------------~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~ 152 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN--------------APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAE 152 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc--------------HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHH
Confidence 3689999999999999999999999321 12346777874 8888888888889999999999999
Q ss_pred HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598 132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT 182 (369)
Q Consensus 132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~ 182 (369)
++ ++++++++||||+. .|+++|+++||+++.
T Consensus 153 ~~----~~~~~~~v~vgD~~----------------~di~aA~~aG~~~i~ 183 (185)
T TIGR01990 153 GL----GVSPSECIGIEDAQ----------------AGIEAIKAAGMFAVG 183 (185)
T ss_pred Hc----CCCHHHeEEEecCH----------------HHHHHHHHcCCEEEe
Confidence 86 68999999999998 899999999999864
No 40
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.59 E-value=7.1e-15 Score=129.69 Aligned_cols=113 Identities=20% Similarity=0.195 Sum_probs=90.6
Q ss_pred CCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHH
Q psy4598 23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKS 102 (369)
Q Consensus 23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~ 102 (369)
...+++++|+||||....+ + .++|++.+.|++|++.|++++|+||+++ ...+..+++.
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~----------~-~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~-----------~~~~~~~~~~ 80 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH----------N-EAYPALRDWIEELKAAGRKLLIVSNNAG-----------EQRAKAVEKA 80 (170)
T ss_pred CCCCEEEEecCCccccCCC----------C-CcChhHHHHHHHHHHcCCEEEEEeCCch-----------HHHHHHHHHH
Confidence 5668999999999986532 2 2699999999999999999999999642 1233455567
Q ss_pred cCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598 103 LNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT 182 (369)
Q Consensus 103 l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~ 182 (369)
+|+.+. ....||+|.+|..+++++ ++++++++||||+.. +|+++|+++||+++.
T Consensus 81 ~gl~~~-------~~~~KP~p~~~~~~l~~~----~~~~~~~l~IGDs~~---------------~Di~aA~~aGi~~i~ 134 (170)
T TIGR01668 81 LGIPVL-------PHAVKPPGCAFRRAHPEM----GLTSEQVAVVGDRLF---------------TDVMGGNRNGSYTIL 134 (170)
T ss_pred cCCEEE-------cCCCCCChHHHHHHHHHc----CCCHHHEEEECCcch---------------HHHHHHHHcCCeEEE
Confidence 776421 135799999999999986 688999999999972 599999999999875
Q ss_pred c
Q psy4598 183 P 183 (369)
Q Consensus 183 p 183 (369)
.
T Consensus 135 v 135 (170)
T TIGR01668 135 V 135 (170)
T ss_pred E
Confidence 4
No 41
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.59 E-value=2.6e-15 Score=137.04 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=83.3
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++||+.+.|++|++. ++++|+||.. ...+..+++.+++ .|+.+++++....+||+|.+++.++++
T Consensus 98 ~~~g~~~~L~~l~~~-~~~~i~Sn~~------------~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~ 164 (224)
T TIGR02254 98 LLPGAFELMENLQQK-FRLYIVTNGV------------RETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALER 164 (224)
T ss_pred eCccHHHHHHHHHhc-CcEEEEeCCc------------hHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHH
Confidence 689999999999999 9999999942 2344566788888 488888888888999999999999998
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
++ ++++++++||||+.. .|+++|+++||+++..
T Consensus 165 ~~---~~~~~~~v~igD~~~---------------~di~~A~~~G~~~i~~ 197 (224)
T TIGR02254 165 MP---KFSKEEVLMIGDSLT---------------ADIKGGQNAGLDTCWM 197 (224)
T ss_pred hc---CCCchheEEECCCcH---------------HHHHHHHHCCCcEEEE
Confidence 41 588999999999962 5999999999998643
No 42
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.58 E-value=4.4e-15 Score=132.15 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=77.5
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCC----CCCchhHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRY----RKPVPGMWEY 128 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~----rKP~~gm~~~ 128 (369)
++||+.+.|++|+ ++++|+||++ ...+...++.+|+ +|+.++++++... .||+|.+|++
T Consensus 85 ~~~g~~~~L~~L~---~~~~i~Tn~~------------~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~ 149 (184)
T TIGR01993 85 PDPELRNLLLRLP---GRKIIFTNGD------------RAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEK 149 (184)
T ss_pred CCHHHHHHHHhCC---CCEEEEeCCC------------HHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHH
Confidence 5789999999997 6899999954 2345666788888 5887777766555 5999999999
Q ss_pred HHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598 129 LSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 129 ~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~ 181 (369)
+++++ ++++++++||||+. .|+++|+++|++++
T Consensus 150 ~~~~~----~~~~~~~l~vgD~~----------------~di~aA~~~G~~~i 182 (184)
T TIGR01993 150 ALREA----GVDPERAIFFDDSA----------------RNIAAAKALGMKTV 182 (184)
T ss_pred HHHHh----CCCccceEEEeCCH----------------HHHHHHHHcCCEEe
Confidence 99986 78999999999998 89999999999976
No 43
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.58 E-value=1.8e-14 Score=137.95 Aligned_cols=99 Identities=27% Similarity=0.397 Sum_probs=86.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccC-CcEEEeCCcchhH---------------------HHHHHHHHHHHhCCCcEEE
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPL-NYTTVNRDTLGSW---------------------QKCVSVMKAALDSGLSVVV 328 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~-~~~~i~~D~~~~~---------------------~~~~~~~~~~l~~g~~vIi 328 (369)
|+++|+|+|+|||||||+|+.|++++ ++.+|+.|.++.. +.....+.+++..|..||+
T Consensus 1 m~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIi 80 (300)
T PHA02530 1 MMKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVII 80 (300)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999998 8999999998421 1123345666788999999
Q ss_pred eCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598 329 DNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK 369 (369)
Q Consensus 329 D~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~ 369 (369)
|+++.+++.|..+.++++++++.+.++++++|.+++.+|++
T Consensus 81 d~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~ 121 (300)
T PHA02530 81 SDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNR 121 (300)
T ss_pred eCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999974
No 44
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.57 E-value=5.2e-15 Score=135.35 Aligned_cols=98 Identities=16% Similarity=0.260 Sum_probs=84.4
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++||+.+.|+.|+++|++++|+||.. ...+..+++.+|+ .|+.+++.+....+||+|.+++.++++
T Consensus 94 ~~~g~~~~l~~l~~~g~~~~i~S~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~ 161 (226)
T PRK13222 94 LYPGVKETLAALKAAGYPLAVVTNKP------------TPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEK 161 (226)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCC------------HHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHH
Confidence 68999999999999999999999943 2345566777887 478888888777899999999999998
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE 184 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe 184 (369)
+ ++++++++||||+. .|+++|+++|+.++...
T Consensus 162 ~----~~~~~~~i~igD~~----------------~Di~~a~~~g~~~i~v~ 193 (226)
T PRK13222 162 L----GLDPEEMLFVGDSR----------------NDIQAARAAGCPSVGVT 193 (226)
T ss_pred c----CCChhheEEECCCH----------------HHHHHHHHCCCcEEEEC
Confidence 6 68899999999998 89999999999987543
No 45
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.57 E-value=4.3e-15 Score=134.97 Aligned_cols=98 Identities=14% Similarity=0.236 Sum_probs=77.7
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++|++.+.|+.|+++||+++|+||...... . .. ..+..+++ .|+.++++.....+||+|.+|+.++++
T Consensus 95 ~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~-----~-~~----~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~ 164 (211)
T TIGR02247 95 LRPSMMAAIKTLRAKGFKTACITNNFPTDH-----S-AE----EALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLER 164 (211)
T ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCCccc-----h-hh----hHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHH
Confidence 589999999999999999999999542110 0 00 11122233 377777777778899999999999998
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT 182 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~ 182 (369)
+ ++++++|+||||+. .|+.+|+++||+++.
T Consensus 165 ~----g~~~~~~l~i~D~~----------------~di~aA~~aG~~~i~ 194 (211)
T TIGR02247 165 L----GVAPEECVFLDDLG----------------SNLKPAAALGITTIK 194 (211)
T ss_pred c----CCCHHHeEEEcCCH----------------HHHHHHHHcCCEEEE
Confidence 6 78999999999998 899999999999864
No 46
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.55 E-value=3.3e-14 Score=135.65 Aligned_cols=96 Identities=17% Similarity=0.266 Sum_probs=77.1
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC---C--CeEEEEecCCCCCCCCchhHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN---V--PVQMFVATQYDRYRKPVPGMWEYL 129 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~---i--~~~~~~~~~~~~~rKP~~gm~~~~ 129 (369)
++||+.+.|+.|+++|++++|+||.+ .. .+..+++.++ + .|+++ +.++...+||.|.+|..+
T Consensus 145 l~pGv~elL~~L~~~g~~l~IvTn~~--------~~----~~~~~l~~~~~~~~~~~~~~v-~~~~~~~~KP~p~~~~~a 211 (286)
T PLN02779 145 LRPGVLRLMDEALAAGIKVAVCSTSN--------EK----AVSKIVNTLLGPERAQGLDVF-AGDDVPKKKPDPDIYNLA 211 (286)
T ss_pred chhhHHHHHHHHHHCCCeEEEEeCCC--------HH----HHHHHHHHhccccccCceEEE-eccccCCCCCCHHHHHHH
Confidence 68999999999999999999999943 12 2233333332 1 24444 666677899999999999
Q ss_pred HHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 130 SQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 130 ~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
++++ ++++++++||||+. .|+++|+++||+++..
T Consensus 212 ~~~~----~~~p~~~l~IGDs~----------------~Di~aA~~aG~~~i~v 245 (286)
T PLN02779 212 AETL----GVDPSRCVVVEDSV----------------IGLQAAKAAGMRCIVT 245 (286)
T ss_pred HHHh----CcChHHEEEEeCCH----------------HhHHHHHHcCCEEEEE
Confidence 9996 68999999999999 8999999999999755
No 47
>COG0645 Predicted kinase [General function prediction only]
Probab=99.54 E-value=6.3e-14 Score=121.10 Aligned_cols=95 Identities=22% Similarity=0.307 Sum_probs=90.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------------------hHHHHHHHHHHHHhCCCcEEE
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------------------SWQKCVSVMKAALDSGLSVVV 328 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------------~~~~~~~~~~~~l~~g~~vIi 328 (369)
++++++|.|||||||+|+.|.+.+++.+|.+|.++ .|..+...+..+++.|.+||+
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~VVl 81 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHSVVL 81 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 68999999999999999999999999999999984 378889999999999999999
Q ss_pred eCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 329 DNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 329 D~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
|+++..+.+|..++.+|+..++++..++|++|.+++..|
T Consensus 82 Da~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~r 120 (170)
T COG0645 82 DATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGR 120 (170)
T ss_pred ecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHH
Confidence 999999999999999999999999999999999998877
No 48
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.54 E-value=3.5e-14 Score=117.79 Aligned_cols=119 Identities=21% Similarity=0.302 Sum_probs=93.7
Q ss_pred EEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC-
Q psy4598 27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV- 105 (369)
Q Consensus 27 ~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i- 105 (369)
+++||+||||+...+... .... ..++|++.+.|++|+++|++++|+||.. ...+...++.+++
T Consensus 1 ~~vfD~D~tl~~~~~~~~---~~~~-~~~~~~~~~~l~~l~~~g~~i~ivS~~~------------~~~~~~~~~~~~~~ 64 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIA---EIEE-LELYPGVKEALKELKEKGIKLALATNKS------------RREVLELLEELGLD 64 (139)
T ss_pred CeEEccCCceEccCcccc---cccc-CCcCcCHHHHHHHHHHCCCeEEEEeCch------------HHHHHHHHHHcCCc
Confidence 479999999998765321 1222 3379999999999999999999999942 3455667777887
Q ss_pred -CeEEEEecCCCCCC----------------CCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcc
Q psy4598 106 -PVQMFVATQYDRYR----------------KPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACT 168 (369)
Q Consensus 106 -~~~~~~~~~~~~~r----------------KP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~ 168 (369)
+++.+++....... ||++.++..+.+++ +..+++++||||+. +
T Consensus 65 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~igD~~----------------~ 124 (139)
T cd01427 65 DYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLL----GVDPEEVLMVGDSL----------------N 124 (139)
T ss_pred hhhhheeccchhhhhcccccccccccccccCCCCHHHHHHHHHHc----CCChhhEEEeCCCH----------------H
Confidence 56656655544333 99999999999986 56789999999999 8
Q ss_pred cHHHHHhCCCCcc
Q psy4598 169 DHLFAFNLNLAFF 181 (369)
Q Consensus 169 D~~~A~n~Gi~f~ 181 (369)
|+.+|.++|+.++
T Consensus 125 d~~~~~~~g~~~i 137 (139)
T cd01427 125 DIEMAKAAGGLGV 137 (139)
T ss_pred HHHHHHHcCCcee
Confidence 9999999999875
No 49
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.53 E-value=3.2e-14 Score=125.65 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=94.5
Q ss_pred ceEEEEecCCceeecCCCC----CCC-CCc---------cccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHH
Q psy4598 25 AKIASFDLDGTLITTKSGK----VFP-VDT---------HDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTR 90 (369)
Q Consensus 25 ~k~~~fDlDgTLi~~~sg~----~~~-~~~---------~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~ 90 (369)
.|++.||+|+||+....-. .+. ... ..-..++|||.+.|+.|+++|++++|+||...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~--------- 72 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDV--------- 72 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCC---------
Confidence 4789999999998764211 111 000 01123799999999999999999999999421
Q ss_pred HHHHHHHHHHHHcCCC-----------eEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCC
Q psy4598 91 DFQAKAEKIIKSLNVP-----------VQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAP 159 (369)
Q Consensus 91 ~~~~~i~~~l~~l~i~-----------~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~ 159 (369)
...+..+++.+++. |+.+++.+.....||.+.+++.+.+.++ .++++++++||||+.
T Consensus 73 --~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~--~gl~p~e~l~VgDs~-------- 140 (174)
T TIGR01685 73 --PEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDP--SVLKPAQILFFDDRT-------- 140 (174)
T ss_pred --hHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhccc--CCCCHHHeEEEcChh--------
Confidence 12344566666653 7888887776677888888877766521 148899999999999
Q ss_pred CCCCCCCcccHHHHHhCCCCccCc
Q psy4598 160 KKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 160 ~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
.|+++|+++|+.++..
T Consensus 141 --------~di~aA~~aGi~~i~v 156 (174)
T TIGR01685 141 --------DNVREVWGYGVTSCYC 156 (174)
T ss_pred --------HhHHHHHHhCCEEEEc
Confidence 8999999999998643
No 50
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.53 E-value=8.1e-15 Score=134.14 Aligned_cols=92 Identities=9% Similarity=0.151 Sum_probs=77.5
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeE-EEEecCCCCCCCCchhHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQ-MFVATQYDRYRKPVPGMWEYLSQ 131 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~-~~~~~~~~~~rKP~~gm~~~~~~ 131 (369)
++||+.+.|+.| +++++|+||.+ +..+...++.+|+ .|+ .+++..+....||+|.+|+.+++
T Consensus 89 ~~~gv~~~L~~L---~~~~~ivTn~~------------~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~ 153 (221)
T PRK10563 89 PIAGANALLESI---TVPMCVVSNGP------------VSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAE 153 (221)
T ss_pred cCCCHHHHHHHc---CCCEEEEeCCc------------HHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHH
Confidence 578999999998 59999999942 2345566777887 364 67777677789999999999999
Q ss_pred HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598 132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~ 181 (369)
++ ++++++|+||||+. .|+++|+++|++++
T Consensus 154 ~~----~~~p~~~l~igDs~----------------~di~aA~~aG~~~i 183 (221)
T PRK10563 154 AM----NVNVENCILVDDSS----------------AGAQSGIAAGMEVF 183 (221)
T ss_pred Hc----CCCHHHeEEEeCcH----------------hhHHHHHHCCCEEE
Confidence 96 68899999999999 89999999999986
No 51
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.53 E-value=2e-14 Score=133.49 Aligned_cols=91 Identities=19% Similarity=0.212 Sum_probs=76.2
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++||+.+.|+.|++. |+++|+||.+. . ++.+|+ +|+.+++++.....||+|.+|..++++
T Consensus 114 ~~~gv~~~L~~L~~~-~~l~i~Tn~~~---------~--------~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~ 175 (238)
T PRK10748 114 VPQATHDTLKQLAKK-WPLVAITNGNA---------Q--------PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEK 175 (238)
T ss_pred CCccHHHHHHHHHcC-CCEEEEECCCc---------h--------HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHH
Confidence 468999999999875 99999999431 0 245666 488888888888899999999999998
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT 182 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~ 182 (369)
+ ++++++++||||+.. .|+.+|+++|++++.
T Consensus 176 ~----~~~~~~~~~VGD~~~---------------~Di~~A~~aG~~~i~ 206 (238)
T PRK10748 176 L----NVPIGEILHVGDDLT---------------TDVAGAIRCGMQACW 206 (238)
T ss_pred c----CCChhHEEEEcCCcH---------------HHHHHHHHCCCeEEE
Confidence 5 789999999999941 799999999999853
No 52
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.52 E-value=8.3e-15 Score=134.67 Aligned_cols=96 Identities=15% Similarity=0.227 Sum_probs=85.6
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
.+||+.+.|++|+++|..++++||.+ ...++.+++.+|+ +|+.+++.++....||+|.+|..++++
T Consensus 87 ~~pGv~~~l~~L~~~~i~~avaS~s~------------~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~ 154 (221)
T COG0637 87 PIPGVVELLEQLKARGIPLAVASSSP------------RRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAER 154 (221)
T ss_pred CCccHHHHHHHHHhcCCcEEEecCCh------------HHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHH
Confidence 57999999999999999999999932 3456778888888 488888888888899999999999999
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT 182 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~ 182 (369)
+ +++|++|+.|.|+. ..+++|+++||..+-
T Consensus 155 L----gv~P~~CvviEDs~----------------~Gi~Aa~aAGm~vv~ 184 (221)
T COG0637 155 L----GVDPEECVVVEDSP----------------AGIQAAKAAGMRVVG 184 (221)
T ss_pred c----CCChHHeEEEecch----------------hHHHHHHHCCCEEEE
Confidence 5 79999999999999 899999999999864
No 53
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.52 E-value=2.3e-14 Score=123.62 Aligned_cols=90 Identities=20% Similarity=0.187 Sum_probs=71.0
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhc
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKN 134 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~ 134 (369)
.+||+.+.|+.|+++|++++|+||.. .......+... +.-+|+.+++.++.. +||+|.++.++++++
T Consensus 65 ~~~g~~e~l~~L~~~g~~~~i~T~~~--------~~~~~~~~~~~---l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~- 131 (154)
T TIGR01549 65 YIRGAADLLKRLKEAGIKLGIISNGS--------LRAQKLLLRKH---LGDYFDLILGSDEFG-AKPEPEIFLAALESL- 131 (154)
T ss_pred eccCHHHHHHHHHHCcCeEEEEeCCc--------hHHHHHHHHHH---HHhcCcEEEecCCCC-CCcCHHHHHHHHHHc-
Confidence 46999999999999999999999943 12222222221 333567677776666 999999999999986
Q ss_pred CCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCC
Q psy4598 135 GDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLN 177 (369)
Q Consensus 135 ~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~G 177 (369)
++++ +++||||+. .|+++|+++|
T Consensus 132 ---~~~~-~~l~iGDs~----------------~Di~aa~~aG 154 (154)
T TIGR01549 132 ---GLPP-EVLHVGDNL----------------NDIEGARNAG 154 (154)
T ss_pred ---CCCC-CEEEEeCCH----------------HHHHHHHHcc
Confidence 6888 999999998 8999999987
No 54
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.52 E-value=2.4e-14 Score=131.07 Aligned_cols=95 Identities=22% Similarity=0.331 Sum_probs=81.6
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
.+|++.+.|++|+.. |+++|+||.. .......+..+|+ +|+.+++++..+..||+|.+|++++++
T Consensus 100 ~~~~~~~~L~~l~~~-~~l~ilTNg~------------~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~ 166 (229)
T COG1011 100 DYPEALEALKELGKK-YKLGILTNGA------------RPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEK 166 (229)
T ss_pred cChhHHHHHHHHHhh-ccEEEEeCCC------------hHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHH
Confidence 478899999999988 9999999932 2234556778886 588888888888999999999999999
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~ 181 (369)
+ +++|++++||||+.. +|+.+|.++|++++
T Consensus 167 ~----g~~p~~~l~VgD~~~---------------~di~gA~~~G~~~v 196 (229)
T COG1011 167 L----GVPPEEALFVGDSLE---------------NDILGARALGMKTV 196 (229)
T ss_pred c----CCCcceEEEECCChh---------------hhhHHHHhcCcEEE
Confidence 6 788999999999994 89999999999985
No 55
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.51 E-value=5.2e-14 Score=120.54 Aligned_cols=115 Identities=21% Similarity=0.261 Sum_probs=98.3
Q ss_pred CCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598 22 CNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK 101 (369)
Q Consensus 22 ~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~ 101 (369)
....|.+++|+|.||+.-+.. ..-|++.+.+.+++++|.+++|+||.+ +.++.....
T Consensus 25 ~~Gikgvi~DlDNTLv~wd~~-----------~~tpe~~~W~~e~k~~gi~v~vvSNn~------------e~RV~~~~~ 81 (175)
T COG2179 25 AHGIKGVILDLDNTLVPWDNP-----------DATPELRAWLAELKEAGIKVVVVSNNK------------ESRVARAAE 81 (175)
T ss_pred HcCCcEEEEeccCceecccCC-----------CCCHHHHHHHHHHHhcCCEEEEEeCCC------------HHHHHhhhh
Confidence 356799999999999976542 257899999999999999999999943 457888889
Q ss_pred HcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598 102 SLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 102 ~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~ 181 (369)
.+|++|- ...+||.+.-|..+++++ ++++++++||||.. .+|+.+|..+||.++
T Consensus 82 ~l~v~fi-------~~A~KP~~~~fr~Al~~m----~l~~~~vvmVGDqL---------------~TDVlggnr~G~~tI 135 (175)
T COG2179 82 KLGVPFI-------YRAKKPFGRAFRRALKEM----NLPPEEVVMVGDQL---------------FTDVLGGNRAGMRTI 135 (175)
T ss_pred hcCCcee-------ecccCccHHHHHHHHHHc----CCChhHEEEEcchh---------------hhhhhcccccCcEEE
Confidence 9998754 235899999999999996 79999999999999 499999999999998
Q ss_pred Cchh
Q psy4598 182 TPEQ 185 (369)
Q Consensus 182 ~pe~ 185 (369)
.++-
T Consensus 136 lV~P 139 (175)
T COG2179 136 LVEP 139 (175)
T ss_pred EEEE
Confidence 7653
No 56
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.50 E-value=3.6e-14 Score=134.47 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=76.9
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++||+.+.|+.|+++|++++|+||.+ ...+..+++.+|+ +|+.+++.+.. +|.+.++..++++
T Consensus 143 l~pg~~e~L~~L~~~gi~laIvSn~~------------~~~~~~~L~~~gl~~~F~~vi~~~~~---~~k~~~~~~~l~~ 207 (273)
T PRK13225 143 LFPGVADLLAQLRSRSLCLGILSSNS------------RQNIEAFLQRQGLRSLFSVVQAGTPI---LSKRRALSQLVAR 207 (273)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCC------------HHHHHHHHHHcCChhheEEEEecCCC---CCCHHHHHHHHHH
Confidence 58999999999999999999999943 3456677888888 47766665433 2345789999988
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
+ ++++++++||||+. .|+++|+++|+.++..
T Consensus 208 ~----~~~p~~~l~IGDs~----------------~Di~aA~~AG~~~I~v 238 (273)
T PRK13225 208 E----GWQPAAVMYVGDET----------------RDVEAARQVGLIAVAV 238 (273)
T ss_pred h----CcChhHEEEECCCH----------------HHHHHHHHCCCeEEEE
Confidence 6 68899999999998 8999999999998654
No 57
>KOG3085|consensus
Probab=99.50 E-value=4e-14 Score=129.71 Aligned_cols=101 Identities=19% Similarity=0.285 Sum_probs=85.8
Q ss_pred ccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHH
Q psy4598 51 DWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEY 128 (369)
Q Consensus 51 d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~ 128 (369)
.|+ ..+++.++|++|+++|+.|.++|| +..+.+.++..+|+ .|+.++.+...+.+||+|.+|++
T Consensus 111 ~~~-~~~~~~~~lq~lR~~g~~l~iisN-------------~d~r~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~ 176 (237)
T KOG3085|consen 111 AWK-YLDGMQELLQKLRKKGTILGIISN-------------FDDRLRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQL 176 (237)
T ss_pred Cce-eccHHHHHHHHHHhCCeEEEEecC-------------CcHHHHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHH
Confidence 444 245667999999999999999999 34455667777777 58888888888999999999999
Q ss_pred HHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598 129 LSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE 184 (369)
Q Consensus 129 ~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe 184 (369)
++++. ++.|++|++|||... +|+++|+|+|+..+...
T Consensus 177 al~~l----~v~Pee~vhIgD~l~---------------nD~~gA~~~G~~ailv~ 213 (237)
T KOG3085|consen 177 ALERL----GVKPEECVHIGDLLE---------------NDYEGARNLGWHAILVD 213 (237)
T ss_pred HHHHh----CCChHHeEEecCccc---------------cccHhHHHcCCEEEEEc
Confidence 99995 788999999999984 89999999999997664
No 58
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.48 E-value=1.9e-13 Score=130.93 Aligned_cols=131 Identities=13% Similarity=0.141 Sum_probs=97.7
Q ss_pred CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL 103 (369)
Q Consensus 24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l 103 (369)
..++++||+||||........|.-.......++|++.+.|++|+++|++++|+||.+ ....+.+...+...
T Consensus 157 ~~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~---------~~~~~~~l~~l~~~ 227 (300)
T PHA02530 157 LPKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRD---------GVCEEDTVEWLRQT 227 (300)
T ss_pred CCCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCC---------hhhHHHHHHHHHHc
Confidence 457999999999997654322211111112369999999999999999999999954 23334444445556
Q ss_pred CCCeEEEEecC-------CCCCCCCchhHHHHHHHHhcCCccc-cCCccEEeeCccccccccCCCCCCCCCcccHHHHHh
Q psy4598 104 NVPVQMFVATQ-------YDRYRKPVPGMWEYLSQEKNGDLAI-DISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFN 175 (369)
Q Consensus 104 ~i~~~~~~~~~-------~~~~rKP~~gm~~~~~~~~~~~~~i-~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n 175 (369)
+++|+.+++.. ....+||.|.++.++++++ .. ++++++||||+. .|+.+|++
T Consensus 228 ~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~----~~~~~~~~~~vgD~~----------------~d~~~a~~ 287 (300)
T PHA02530 228 DIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEK----IAPKYDVLLAVDDRD----------------QVVDMWRR 287 (300)
T ss_pred CCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHH----hccCceEEEEEcCcH----------------HHHHHHHH
Confidence 66677666665 3446899999999999985 45 579999999999 89999999
Q ss_pred CCCCccCc
Q psy4598 176 LNLAFFTP 183 (369)
Q Consensus 176 ~Gi~f~~p 183 (369)
+||+++..
T Consensus 288 ~Gi~~i~v 295 (300)
T PHA02530 288 IGLECWQV 295 (300)
T ss_pred hCCeEEEe
Confidence 99998754
No 59
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.48 E-value=8.4e-14 Score=141.34 Aligned_cols=95 Identities=14% Similarity=0.118 Sum_probs=78.8
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++||+.+.|+.|+++|++++|+||.+ ...+..+++.+|+ +|+.+++.++. ..||+|.++..++++
T Consensus 331 l~pG~~e~L~~Lk~~g~~l~IvS~~~------------~~~~~~~l~~~~l~~~f~~i~~~d~v-~~~~kP~~~~~al~~ 397 (459)
T PRK06698 331 LYPNVKEIFTYIKENNCSIYIASNGL------------TEYLRAIVSYYDLDQWVTETFSIEQI-NSLNKSDLVKSILNK 397 (459)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCc------------hHHHHHHHHHCCcHhhcceeEecCCC-CCCCCcHHHHHHHHh
Confidence 58999999999999999999999942 3456667888887 47888887665 347888899999876
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE 184 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe 184 (369)
+++++|+||||+. .|+++|+++|+.++...
T Consensus 398 ------l~~~~~v~VGDs~----------------~Di~aAk~AG~~~I~v~ 427 (459)
T PRK06698 398 ------YDIKEAAVVGDRL----------------SDINAAKDNGLIAIGCN 427 (459)
T ss_pred ------cCcceEEEEeCCH----------------HHHHHHHHCCCeEEEEe
Confidence 3578999999998 89999999999986543
No 60
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.47 E-value=4.4e-13 Score=115.91 Aligned_cols=96 Identities=24% Similarity=0.315 Sum_probs=77.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----------------HHHHHHHHHHHHhCCCcEEEeC
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----------------WQKCVSVMKAALDSGLSVVVDN 330 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vIiD~ 330 (369)
+.+|+|+|+|||||||+|++|.+.+ ++.+|+.|.++. .+++...+....++|..||++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva~ 81 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVAF 81 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEee
Confidence 5789999999999999999999875 688999999852 3556677788889999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598 331 TNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK 369 (369)
Q Consensus 331 tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~ 369 (369)
..+.++.|+..+++.... .+..||++||.++|++|+.
T Consensus 82 isp~~~~R~~~R~~~~~~--~f~eVyv~~~~e~~~~RD~ 118 (156)
T PF01583_consen 82 ISPYREDREWARELIPNE--RFIEVYVDCPLEVCRKRDP 118 (156)
T ss_dssp ---SHHHHHHHHHHHHTT--EEEEEEEES-HHHHHHHTT
T ss_pred ccCchHHHHHHHHhCCcC--ceEEEEeCCCHHHHHHhCc
Confidence 999999999999887754 7899999999999999973
No 61
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.46 E-value=4.5e-13 Score=115.25 Aligned_cols=93 Identities=23% Similarity=0.273 Sum_probs=76.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhH-----------------H----HHHHHHHHHH-hCCCcEEEeCC
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSW-----------------Q----KCVSVMKAAL-DSGLSVVVDNT 331 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~-----------------~----~~~~~~~~~l-~~g~~vIiD~t 331 (369)
+|+|+|+|||||||+|+.|++.+++.+++.|.++.. . .+...+...+ ..+.+||+|++
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vVid~~ 80 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGVVVACS 80 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 589999999999999999999999999999998531 1 1112222223 47889999999
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 332 NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 332 n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
+.....|..+.+++ ++.++.+|++++|.+++.+|+
T Consensus 81 ~~~~~~r~~~~~~~--~~~~~~~v~l~~~~~~~~~R~ 115 (150)
T cd02021 81 ALKRIYRDILRGGA--ANPRVRFVHLDGPREVLAERL 115 (150)
T ss_pred cccHHHHHHHHhcC--CCCCEEEEEEECCHHHHHHHH
Confidence 99999999998888 788999999999999999986
No 62
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.46 E-value=3.7e-13 Score=116.19 Aligned_cols=94 Identities=22% Similarity=0.299 Sum_probs=77.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----------------HHHHHHHHHHHHhCCCcEEEeCCC
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----------------WQKCVSVMKAALDSGLSVVVDNTN 332 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vIiD~tn 332 (369)
+|+|+|+|||||||+++.|++.+ ++.+++.|.++. ++.+...++..++.|.+||+|+++
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~ 80 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFIS 80 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCC
Confidence 47899999999999999999876 367788887642 222334455667789999999999
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598 333 PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK 369 (369)
Q Consensus 333 ~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~ 369 (369)
..+..|..+.++++ +.++.++++++|.++|.+|+.
T Consensus 81 ~~~~~R~~~~~l~~--~~~~~~i~l~~~~e~~~~R~~ 115 (149)
T cd02027 81 PYREDREAARKIIG--GGDFLEVFVDTPLEVCEQRDP 115 (149)
T ss_pred CCHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhCc
Confidence 99999999988876 789999999999999999974
No 63
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.46 E-value=2.7e-13 Score=126.77 Aligned_cols=96 Identities=26% Similarity=0.400 Sum_probs=81.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----HH---------HHHHHHHHHHhCCCcEEEeCCCCCH
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----WQ---------KCVSVMKAALDSGLSVVVDNTNPDK 335 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----~~---------~~~~~~~~~l~~g~~vIiD~tn~~~ 335 (369)
+|+|+|+|||||||+|++|++.+ ++.+++.|.++. |. .....+..+++.|..||+|++|...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D~~~~~~ 80 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTALKNKYSVIVDDTNYYN 80 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhHHhHHHHHHHHHHHHHHHHhCCCeEEEeccchHH
Confidence 58999999999999999999864 467888887742 11 1234466677888899999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598 336 ESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK 369 (369)
Q Consensus 336 ~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~ 369 (369)
..|..+..+|+.+++++.+||+++|.++|.+||+
T Consensus 81 ~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~ 114 (249)
T TIGR03574 81 SMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNI 114 (249)
T ss_pred HHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHH
Confidence 9999999999999999999999999999999973
No 64
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.46 E-value=3.2e-13 Score=127.44 Aligned_cols=98 Identities=21% Similarity=0.227 Sum_probs=72.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch--------------hHHHHHHHHHHHHhCCCcEEEeCCC
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG--------------SWQKCVSVMKAALDSGLSVVVDNTN 332 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~--------------~~~~~~~~~~~~l~~g~~vIiD~tn 332 (369)
+.||+|+|.|||||||+|++|.+.+ .+.+++.|.+. ....+...+..+++....||+|+.|
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~n 80 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNN 80 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S--
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCc
Confidence 3689999999999999999999863 45667755542 1234566677788888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598 333 PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK 369 (369)
Q Consensus 333 ~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~ 369 (369)
..+..|.++..+|++++..+.+||+++|.|.|++||.
T Consensus 81 YiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~ 117 (270)
T PF08433_consen 81 YIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNS 117 (270)
T ss_dssp -SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhh
Confidence 9999999999999999999999999999999999983
No 65
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.46 E-value=1.7e-13 Score=151.08 Aligned_cols=97 Identities=14% Similarity=0.192 Sum_probs=85.2
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC---eEEEEecCCCCCCCCchhHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP---VQMFVATQYDRYRKPVPGMWEYLSQ 131 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~---~~~~~~~~~~~~rKP~~gm~~~~~~ 131 (369)
++||+.+.|++|+++||+++|+||.. ...++.+++.+|+. |+.+++.++....||+|.+|.++++
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~------------~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~ 229 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSAD------------RIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAK 229 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCc------------HHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHH
Confidence 48999999999999999999999943 23456667888874 7888898888889999999999999
Q ss_pred HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
++ ++++++|+||||+. .|+++|+++||+++..
T Consensus 230 ~l----gv~p~e~v~IgDs~----------------~Di~AA~~aGm~~I~v 261 (1057)
T PLN02919 230 IL----GVPTSECVVIEDAL----------------AGVQAARAAGMRCIAV 261 (1057)
T ss_pred Hc----CcCcccEEEEcCCH----------------HHHHHHHHcCCEEEEE
Confidence 86 78999999999999 8999999999998644
No 66
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.45 E-value=2.8e-13 Score=117.61 Aligned_cols=112 Identities=16% Similarity=0.248 Sum_probs=84.1
Q ss_pred ceEEEEecCCceeecCCCCCCCCC---ccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598 25 AKIASFDLDGTLITTKSGKVFPVD---THDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK 101 (369)
Q Consensus 25 ~k~~~fDlDgTLi~~~sg~~~~~~---~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~ 101 (369)
.|+++||+||||+...- .|... ...|. +.++. +|++|+++|++++|+||.+ ...+..+++
T Consensus 1 ~~~~~~D~Dgtl~~~~~--~~~~~~~~~~~~~-~~~~~--~i~~Lk~~G~~i~IvTn~~------------~~~~~~~l~ 63 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKI--YYTNNGEEIKAFN-VRDGY--GIRCALKSGIEVAIITGRK------------AKLVEDRCK 63 (154)
T ss_pred CeEEEEeCceeEEcCeE--EECCCCcEEEEEe-chhHH--HHHHHHHCCCEEEEEECCC------------CHHHHHHHH
Confidence 37899999999996421 12222 22232 23343 8999999999999999954 123456788
Q ss_pred HcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598 102 SLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF 180 (369)
Q Consensus 102 ~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f 180 (369)
.+|+. ..+ . ..||+|.++..+++++ ++++++++||||+. .|+.++.++|+.+
T Consensus 64 ~~gi~-~~~-~-----~~~~k~~~~~~~~~~~----~~~~~~~~~vGDs~----------------~D~~~~~~ag~~~ 115 (154)
T TIGR01670 64 TLGIT-HLY-Q-----GQSNKLIAFSDILEKL----ALAPENVAYIGDDL----------------IDWPVMEKVGLSV 115 (154)
T ss_pred HcCCC-EEE-e-----cccchHHHHHHHHHHc----CCCHHHEEEECCCH----------------HHHHHHHHCCCeE
Confidence 88875 122 2 2488999999999986 68999999999999 8999999999986
No 67
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.44 E-value=4e-13 Score=119.14 Aligned_cols=97 Identities=23% Similarity=0.348 Sum_probs=77.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch-------------hHHHH-----HHHHHHHHhCCCcEEE
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG-------------SWQKC-----VSVMKAALDSGLSVVV 328 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~-------------~~~~~-----~~~~~~~l~~g~~vIi 328 (369)
+++|+++|+|||||||+|+.|++.+ ...++..|... .|+.. .+.+..+++ +..||+
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalk-n~~VIv 79 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALK-NYLVIV 79 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhc-ceEEEE
Confidence 3689999999999999999999875 34566665542 12221 222333333 668999
Q ss_pred eCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598 329 DNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK 369 (369)
Q Consensus 329 D~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~ 369 (369)
|++|.....|.++...|++...+..+|++.||.++|.+||+
T Consensus 80 DdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~ 120 (261)
T COG4088 80 DDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNR 120 (261)
T ss_pred ecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhc
Confidence 99999999999999999999999999999999999999985
No 68
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.44 E-value=3.5e-13 Score=116.21 Aligned_cols=121 Identities=17% Similarity=0.119 Sum_probs=92.3
Q ss_pred CceEEEEecCCceeecC--CCCCCCCC--ccc----------cccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCH
Q psy4598 24 SAKIASFDLDGTLITTK--SGKVFPVD--THD----------WKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMST 89 (369)
Q Consensus 24 ~~k~~~fDlDgTLi~~~--sg~~~~~~--~~d----------~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~ 89 (369)
+++.+.+||||||+.+. +-...... +.+ ...++||+.+.|+.|+ ++|+++|+||.+
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~--------- 70 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGL--------- 70 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCc---------
Confidence 35789999999999873 21111111 111 1246999999999998 679999999943
Q ss_pred HHHHHHHHHHHHHcCC--C-eEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCC
Q psy4598 90 RDFQAKAEKIIKSLNV--P-VQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFA 166 (369)
Q Consensus 90 ~~~~~~i~~~l~~l~i--~-~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s 166 (369)
+..++.+++.+++ . |+.+++.+++...||. |.++++.+ ++++++|+||||+.
T Consensus 71 ---~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l----~~~p~~~i~i~Ds~--------------- 125 (148)
T smart00577 71 ---RMYADPVLDLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLL----GRDLSNVIIIDDSP--------------- 125 (148)
T ss_pred ---HHHHHHHHHHhCcCCCEeeeEEECccccccCCe---EeecHHHc----CCChhcEEEEECCH---------------
Confidence 3345666777776 2 4788888888889997 77788875 78999999999999
Q ss_pred cccHHHHHhCCCCc
Q psy4598 167 CTDHLFAFNLNLAF 180 (369)
Q Consensus 167 ~~D~~~A~n~Gi~f 180 (369)
.|+++|.++||..
T Consensus 126 -~~~~aa~~ngI~i 138 (148)
T smart00577 126 -DSWPFHPENLIPI 138 (148)
T ss_pred -HHhhcCccCEEEe
Confidence 8999999999874
No 69
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.43 E-value=6.5e-13 Score=122.92 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=89.4
Q ss_pred CCCce-EEEEecCCceeecCCC----CC-CCC-------Cccccc----------cccccHHHHHHHHHHCCcEEEEEec
Q psy4598 22 CNSAK-IASFDLDGTLITTKSG----KV-FPV-------DTHDWK----------LLFSNIESVLKQYLDDGYKLVIFTN 78 (369)
Q Consensus 22 ~~~~k-~~~fDlDgTLi~~~sg----~~-~~~-------~~~d~~----------~~~p~v~~~L~~L~~~G~~i~i~TN 78 (369)
..+.+ .++||+||||+++..+ .. +.. +..-|. ..++++.+.|++|+++|++++|+||
T Consensus 59 ~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTn 138 (237)
T TIGR01672 59 EGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTG 138 (237)
T ss_pred CCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeC
Confidence 34445 8999999999988753 11 111 111122 2356699999999999999999999
Q ss_pred CCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccc
Q psy4598 79 QGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAAN 156 (369)
Q Consensus 79 q~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~ 156 (369)
... ......++.+++.+|++ |.++++.+.....||.+.. +++++ ++ ++||||+.
T Consensus 139 r~~--------~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~~---~l~~~----~i----~i~vGDs~----- 194 (237)
T TIGR01672 139 RTP--------GKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKTQ---WIQDK----NI----RIHYGDSD----- 194 (237)
T ss_pred CCC--------CcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHHH---HHHhC----CC----eEEEeCCH-----
Confidence 521 01123456677888985 6777877766667887653 34443 33 79999999
Q ss_pred cCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 157 WAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 157 ~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
.|+.+|+++|++++..
T Consensus 195 -----------~DI~aAk~AGi~~I~V 210 (237)
T TIGR01672 195 -----------NDITAAKEAGARGIRI 210 (237)
T ss_pred -----------HHHHHHHHCCCCEEEE
Confidence 8999999999998755
No 70
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.43 E-value=5.3e-13 Score=112.26 Aligned_cols=107 Identities=17% Similarity=0.188 Sum_probs=73.8
Q ss_pred eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC-
Q psy4598 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN- 104 (369)
Q Consensus 26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~- 104 (369)
|+++|||||||+.............+-..++||+.+.|+.|+++|++++|+||.+ .. ..+..+++.++
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~--------~~---~~~~~~l~~~~~ 69 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYND--------DP---HVAYELLKIFED 69 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCC--------CH---HHHHHHHHhccc
Confidence 6789999999996631001111100111479999999999999999999999952 11 22333444444
Q ss_pred ------C--CeEEEEecCCCCCCCCchhHHHHHHHHhcCCcc--ccCCccEEeeCcc
Q psy4598 105 ------V--PVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLA--IDISQSFYAGDAA 151 (369)
Q Consensus 105 ------i--~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~--i~~~~s~~VGD~~ 151 (369)
+ .|+.+++.+ .+|+|.+|..+++++ + +.+++|+||||+.
T Consensus 70 ~~~i~~l~~~f~~~~~~~----~~pkp~~~~~a~~~l----g~~~~p~~~l~igDs~ 118 (128)
T TIGR01681 70 FGIIFPLAEYFDPLTIGY----WLPKSPRLVEIALKL----NGVLKPKSILFVDDRP 118 (128)
T ss_pred cccchhhHhhhhhhhhcC----CCcHHHHHHHHHHHh----cCCCCcceEEEECCCH
Confidence 2 144444442 469999999999996 6 9999999999998
No 71
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.42 E-value=3.3e-13 Score=123.24 Aligned_cols=94 Identities=17% Similarity=0.155 Sum_probs=73.9
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEE-E-------Ee--cCCCCCCCCc
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQM-F-------VA--TQYDRYRKPV 122 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~-~-------~~--~~~~~~rKP~ 122 (369)
++||+.+.|+.|+++|++++|+||.. ...+..+++.+|+. |.. + .+ .......+|+
T Consensus 86 ~~~g~~~~l~~l~~~g~~~~IvS~~~------------~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 153 (219)
T TIGR00338 86 LTEGAEELVKTLKEKGYKVAVISGGF------------DLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYK 153 (219)
T ss_pred cCCCHHHHHHHHHHCCCEEEEECCCc------------HHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCccc
Confidence 57999999999999999999999932 34556677778874 321 1 01 1122346788
Q ss_pred hhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598 123 PGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF 180 (369)
Q Consensus 123 ~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f 180 (369)
|.+++.+++++ ++++++|+||||+. +|+.+|.++|+.+
T Consensus 154 ~~~~~~~~~~~----~~~~~~~i~iGDs~----------------~Di~aa~~ag~~i 191 (219)
T TIGR00338 154 GKTLLILLRKE----GISPENTVAVGDGA----------------NDLSMIKAAGLGI 191 (219)
T ss_pred HHHHHHHHHHc----CCCHHHEEEEECCH----------------HHHHHHHhCCCeE
Confidence 99999999986 68999999999998 8999999999986
No 72
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.40 E-value=2e-12 Score=114.47 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=73.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCC--cEEEeCCcch------------------------------hHHHHHHHHHHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDTLG------------------------------SWQKCVSVMKAAL 320 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D~~~------------------------------~~~~~~~~~~~~l 320 (369)
.+|+|+|+|||||||+|++|++..+ +.+++.|.+. .|......+..++
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l 82 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAMA 82 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999998863 4566777551 2344556677888
Q ss_pred hCCCcEEEeCCCC-CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 321 DSGLSVVVDNTNP-DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 321 ~~g~~vIiD~tn~-~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
++|.+||+|+++. ..+.|..+..+ .+.++.+|++.||.+++.+|+
T Consensus 83 ~~G~~VIvD~~~~~~~~~r~~~~~~---~~~~~~~v~l~~~~~~l~~R~ 128 (175)
T cd00227 83 RAGANVIADDVFLGRAALQDCWRSF---VGLDVLWVGVRCPGEVAEGRE 128 (175)
T ss_pred hCCCcEEEeeeccCCHHHHHHHHHh---cCCCEEEEEEECCHHHHHHHH
Confidence 9999999999987 56666555543 357899999999999999986
No 73
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.40 E-value=1.9e-12 Score=112.37 Aligned_cols=101 Identities=24% Similarity=0.307 Sum_probs=85.3
Q ss_pred hccccccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----------------HHHHHHHHHHHHhCCC
Q psy4598 266 VMKAALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----------------WQKCVSVMKAALDSGL 324 (369)
Q Consensus 266 ~~~~~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~ 324 (369)
.+....+.+|+|+|+|||||||+|.+|.+.+ ...+|+.|.+|. .++....|+...++|.
T Consensus 17 ~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~ 96 (197)
T COG0529 17 ALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGL 96 (197)
T ss_pred HHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCe
Confidence 3445556899999999999999999999874 578999999862 4566777888889999
Q ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 325 SVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 325 ~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
.||+....+.++.|+..+++..+- ++..||++||+++|++|+
T Consensus 97 iviva~ISP~r~~R~~aR~~~~~~--~FiEVyV~~pl~vce~RD 138 (197)
T COG0529 97 IVIVAFISPYREDRQMARELLGEG--EFIEVYVDTPLEVCERRD 138 (197)
T ss_pred EEEEEeeCccHHHHHHHHHHhCcC--ceEEEEeCCCHHHHHhcC
Confidence 999999999999999888876533 789999999999999996
No 74
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.40 E-value=8.6e-13 Score=114.51 Aligned_cols=95 Identities=18% Similarity=0.338 Sum_probs=84.1
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++|++.+.|++|+++|++++|+||.+ ...+...++.+|+. |+.++++++...+||+|.+|..++++
T Consensus 78 ~~~~~~~~L~~l~~~~~~~~i~Sn~~------------~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~ 145 (176)
T PF13419_consen 78 PYPGVRELLERLKAKGIPLVIVSNGS------------RERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEK 145 (176)
T ss_dssp ESTTHHHHHHHHHHTTSEEEEEESSE------------HHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHH
T ss_pred hhhhhhhhhhhcccccceeEEeecCC------------cccccccccccccccccccccccchhhhhhhHHHHHHHHHHH
Confidence 68999999999999999999999932 34456777888885 88888888888899999999999999
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~ 181 (369)
+ ++++++++||||+. .|+++|+++||+++
T Consensus 146 ~----~~~p~~~~~vgD~~----------------~d~~~A~~~G~~~i 174 (176)
T PF13419_consen 146 L----GIPPEEILFVGDSP----------------SDVEAAKEAGIKTI 174 (176)
T ss_dssp H----TSSGGGEEEEESSH----------------HHHHHHHHTTSEEE
T ss_pred c----CCCcceEEEEeCCH----------------HHHHHHHHcCCeEE
Confidence 6 78999999999999 89999999999875
No 75
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.39 E-value=5.7e-13 Score=120.20 Aligned_cols=96 Identities=15% Similarity=0.201 Sum_probs=78.3
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHH-cCC--CeEEEEecCCCCCCCCchhHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKS-LNV--PVQMFVATQYDRYRKPVPGMWEYLSQ 131 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~-l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~ 131 (369)
++||+.+.|++|+++||+++|+||.+. ..+ ...+.. .++ .|+.++++.....+||+|.+|+++++
T Consensus 85 ~~~g~~e~L~~l~~~g~~~~i~Sn~~~--------~~~----~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~ 152 (199)
T PRK09456 85 LRPEVIAIMHKLREQGHRVVVLSNTNR--------LHT----TFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQ 152 (199)
T ss_pred cCHHHHHHHHHHHhCCCcEEEEcCCch--------hhH----HHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHH
Confidence 579999999999999999999999541 111 111111 122 47878888888899999999999999
Q ss_pred HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598 132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT 182 (369)
Q Consensus 132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~ 182 (369)
++ +++|++++||||+. .|+++|+++|++++.
T Consensus 153 ~~----~~~p~~~l~vgD~~----------------~di~aA~~aG~~~i~ 183 (199)
T PRK09456 153 AE----GFSAADAVFFDDNA----------------DNIEAANALGITSIL 183 (199)
T ss_pred Hc----CCChhHeEEeCCCH----------------HHHHHHHHcCCEEEE
Confidence 96 79999999999998 899999999999864
No 76
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.39 E-value=2.6e-12 Score=112.09 Aligned_cols=90 Identities=17% Similarity=0.205 Sum_probs=73.5
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh---------------------HHHHHHHHHHHHhCCCcEEEeCCCC
Q psy4598 275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS---------------------WQKCVSVMKAALDSGLSVVVDNTNP 333 (369)
Q Consensus 275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~---------------------~~~~~~~~~~~l~~g~~vIiD~tn~ 333 (369)
|+|+|+|||||||+|+.|++.++..+++.|.+.. ++.+.+.+...+..|..+|+|+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~t~~ 80 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGIITCSAL 80 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 5789999999999999999999999999999621 1334456666777788889999987
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 334 DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 334 ~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
.+..|..+ +.++..+.++|+++|.+++.+|.
T Consensus 81 ~~~~r~~~----~~~~~~~~~i~l~~~~e~~~~R~ 111 (163)
T TIGR01313 81 KRHYRDIL----REAEPNLHFIYLSGDKDVILERM 111 (163)
T ss_pred HHHHHHHH----HhcCCCEEEEEEeCCHHHHHHHH
Confidence 66666544 46788899999999999999986
No 77
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.38 E-value=8.6e-13 Score=118.38 Aligned_cols=98 Identities=17% Similarity=0.179 Sum_probs=72.5
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCc----------
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPV---------- 122 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~---------- 122 (369)
++||+.+.|+.|+++|++++|+||. ....++.+++.+|+. |...+...+....+|.
T Consensus 81 ~~~g~~e~l~~l~~~g~~~~IvS~~------------~~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k 148 (201)
T TIGR01491 81 LRDYAEELVRWLKEKGLKTAIVSGG------------IMCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNK 148 (201)
T ss_pred CCccHHHHHHHHHHCCCEEEEEeCC------------cHHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccH
Confidence 5799999999999999999999993 234566777888874 3222222222333333
Q ss_pred hhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc-Cch
Q psy4598 123 PGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF-TPE 184 (369)
Q Consensus 123 ~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~-~pe 184 (369)
+.+++.+++++ ++++++++||||+. +|+.+|.++|+.+. .|.
T Consensus 149 ~~~~~~~~~~~----~~~~~~~i~iGDs~----------------~D~~~a~~ag~~~a~~~~ 191 (201)
T TIGR01491 149 GEAVERLKREL----NPSLTETVAVGDSK----------------NDLPMFEVADISISLGDE 191 (201)
T ss_pred HHHHHHHHHHh----CCCHHHEEEEcCCH----------------hHHHHHHhcCCeEEECCC
Confidence 35788888775 68899999999999 89999999999984 343
No 78
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.38 E-value=4.1e-12 Score=114.82 Aligned_cols=100 Identities=16% Similarity=0.338 Sum_probs=74.0
Q ss_pred ccccEEEEEEcCCCCcHHHHHHHHhccC---CcEEEeCCcchh----HH--------------------HHHHHHHHHHh
Q psy4598 269 AALDSVLIMIGSQGSGKSSFVSTYLKPL---NYTTVNRDTLGS----WQ--------------------KCVSVMKAALD 321 (369)
Q Consensus 269 ~~~~~lIll~G~pGSGKSTla~~L~~~~---~~~~i~~D~~~~----~~--------------------~~~~~~~~~l~ 321 (369)
...|.++++.|+|||||||++..+...+ ++++|+.|.++. |. .....+..+++
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~ 91 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIE 91 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999875 799999999853 11 22344566788
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 322 SGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 322 ~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
.+.++|+|+|+.+++....+++.+++.||.+.++++.+|.++++.|.
T Consensus 92 ~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv 138 (199)
T PF06414_consen 92 NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERV 138 (199)
T ss_dssp CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHH
T ss_pred cCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHH
Confidence 99999999999988888889999999999999999999999998875
No 79
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.37 E-value=1.8e-12 Score=116.48 Aligned_cols=91 Identities=13% Similarity=0.174 Sum_probs=67.9
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC------CeEEEEecCCCCCCCCchhHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV------PVQMFVATQYDRYRKPVPGMWEY 128 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i------~~~~~~~~~~~~~rKP~~gm~~~ 128 (369)
++||+.+.|++|++. +.++++||.+.. .... +++.+++ .|+.+++.+. .||+|.++..
T Consensus 75 ~~pG~~e~L~~L~~~-~~~~i~Tn~~~~---------~~~~---~~~~~~l~~~f~~~f~~i~~~~~---~~~kp~~~~~ 138 (197)
T PHA02597 75 AYDDALDVINKLKED-YDFVAVTALGDS---------IDAL---LNRQFNLNALFPGAFSEVLMCGH---DESKEKLFIK 138 (197)
T ss_pred CCCCHHHHHHHHHhc-CCEEEEeCCccc---------hhHH---HHhhCCHHHhCCCcccEEEEecc---CcccHHHHHH
Confidence 689999999999987 578888994321 1111 1122222 3566666654 4788999999
Q ss_pred HHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhC--CCCccCc
Q psy4598 129 LSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNL--NLAFFTP 183 (369)
Q Consensus 129 ~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~--Gi~f~~p 183 (369)
+++++ + +++++||||+. .|+++|+++ ||+++..
T Consensus 139 a~~~~----~--~~~~v~vgDs~----------------~di~aA~~a~~Gi~~i~~ 173 (197)
T PHA02597 139 AKEKY----G--DRVVCFVDDLA----------------HNLDAAHEALSQLPVIHM 173 (197)
T ss_pred HHHHh----C--CCcEEEeCCCH----------------HHHHHHHHHHcCCcEEEe
Confidence 99985 4 78899999999 899999999 9999765
No 80
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.36 E-value=5.1e-12 Score=112.59 Aligned_cols=97 Identities=21% Similarity=0.268 Sum_probs=80.9
Q ss_pred cccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----------------HHHHHHHHHHHHhCCCcEEE
Q psy4598 270 ALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----------------WQKCVSVMKAALDSGLSVVV 328 (369)
Q Consensus 270 ~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vIi 328 (369)
.++.+|+|+|+|||||||+++.|...+ ++.+++.|.++. +..+...+...+..|.+||+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~VI~ 95 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAKLFVRNGIIVIT 95 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 456899999999999999999999874 367889888741 23344556667889999999
Q ss_pred eCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 329 DNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 329 D~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
|++++.+..|..+..++... ++.++|+++|.+++.+|+
T Consensus 96 d~~~~~~~~r~~~~~~~~~~--~~~~v~l~~~~e~~~~R~ 133 (184)
T TIGR00455 96 SFISPYRADRQMVRELIEKG--EFIEVFVDCPLEVCEQRD 133 (184)
T ss_pred ecCCCCHHHHHHHHHhCcCC--CeEEEEEeCCHHHHHHhC
Confidence 99999999999998887754 688999999999999986
No 81
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.36 E-value=6.3e-12 Score=117.95 Aligned_cols=130 Identities=22% Similarity=0.278 Sum_probs=92.9
Q ss_pred CCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCC------------CCHH
Q psy4598 23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKK------------MSTR 90 (369)
Q Consensus 23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~------------~~~~ 90 (369)
...+.++||+||||+.... .+||+.+.|+.|+++|.+++++||.+..++.. .+.+
T Consensus 6 ~~y~~~l~DlDGvl~~G~~-------------~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~ 72 (269)
T COG0647 6 DKYDGFLFDLDGVLYRGNE-------------AIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPD 72 (269)
T ss_pred hhcCEEEEcCcCceEeCCc-------------cCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHH
Confidence 4557899999999996543 79999999999999999999999988765430 0111
Q ss_pred -----------HHHH-------------HHHHHHHHcCCCe---------E-E-------------------------EE
Q psy4598 91 -----------DFQA-------------KAEKIIKSLNVPV---------Q-M-------------------------FV 111 (369)
Q Consensus 91 -----------~~~~-------------~i~~~l~~l~i~~---------~-~-------------------------~~ 111 (369)
-+.+ .+...++.+|+.. + + |+
T Consensus 73 ~i~TS~~at~~~l~~~~~~~kv~viG~~~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI 152 (269)
T COG0647 73 DIVTSGDATADYLAKQKPGKKVYVIGEEGLKEELEGAGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFI 152 (269)
T ss_pred HeecHHHHHHHHHHhhCCCCEEEEECCcchHHHHHhCCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHHHHcCCcEE
Confidence 0011 1223344444311 1 1 22
Q ss_pred ecCC-----------------------------CCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCC
Q psy4598 112 ATQY-----------------------------DRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKK 162 (369)
Q Consensus 112 ~~~~-----------------------------~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~ 162 (369)
|+.. ....||++.|++.+++.+ +.++++++||||+.-
T Consensus 153 ~tNpD~~~p~~~g~~pgaGai~~~~~~~tg~~~~~~GKP~~~i~~~al~~~----~~~~~~~~mVGD~~~---------- 218 (269)
T COG0647 153 ATNPDLTVPTERGLRPGAGAIAALLEQATGREPTVIGKPSPAIYEAALEKL----GLDRSEVLMVGDRLD---------- 218 (269)
T ss_pred EeCCCccccCCCCCccCcHHHHHHHHHhhCCcccccCCCCHHHHHHHHHHh----CCCcccEEEEcCCch----------
Confidence 2211 133799999999999985 688889999999994
Q ss_pred CCCCcccHHHHHhCCCCccCch
Q psy4598 163 KDFACTDHLFAFNLNLAFFTPE 184 (369)
Q Consensus 163 ~d~s~~D~~~A~n~Gi~f~~pe 184 (369)
+||++|+++||.++.+.
T Consensus 219 -----TDI~~a~~~G~~t~LV~ 235 (269)
T COG0647 219 -----TDILGAKAAGLDTLLVL 235 (269)
T ss_pred -----hhHHHHHHcCCCEEEEc
Confidence 99999999999986653
No 82
>PRK10444 UMP phosphatase; Provisional
Probab=99.34 E-value=1.9e-11 Score=114.36 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=42.0
Q ss_pred CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
..||+|.|++.+++++ ++++++++||||+.. +|+.+|+++|++++..
T Consensus 172 ~gKP~~~~~~~~~~~~----~~~~~~~v~IGD~~~---------------tDi~~A~~~G~~~vlV 218 (248)
T PRK10444 172 VGKPSPWIIRAALNKM----QAHSEETVIVGDNLR---------------TDILAGFQAGLETILV 218 (248)
T ss_pred cCCCCHHHHHHHHHHc----CCCcccEEEECCCcH---------------HHHHHHHHcCCCEEEE
Confidence 3799999999999985 689999999999973 7999999999999655
No 83
>PLN02811 hydrolase
Probab=99.33 E-value=4.4e-12 Score=116.23 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=80.2
Q ss_pred ccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecC--CCCCCCCchhHHHH
Q psy4598 53 KLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQ--YDRYRKPVPGMWEY 128 (369)
Q Consensus 53 ~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~--~~~~rKP~~gm~~~ 128 (369)
..++|||.+.|+.|+++|++++|+||.+ ...+..++ ++..++ +|+.+++.+ +....||+|.+|..
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~--------~~~~~~~~---~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~ 145 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSH--------KRHFDLKT---QRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLA 145 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCc--------hhhHHHHH---cccHHHHhhCCEEEECChhhccCCCCCcHHHHH
Confidence 3468999999999999999999999942 11121111 112233 467778887 67788999999999
Q ss_pred HHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598 129 LSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE 184 (369)
Q Consensus 129 ~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe 184 (369)
++++++ +.++++++|+||||+. .|+++|+++|++++...
T Consensus 146 a~~~~~-~~~~~~~~~v~IgDs~----------------~di~aA~~aG~~~i~v~ 184 (220)
T PLN02811 146 AARRFE-DGPVDPGKVLVFEDAP----------------SGVEAAKNAGMSVVMVP 184 (220)
T ss_pred HHHHhC-CCCCCccceEEEeccH----------------hhHHHHHHCCCeEEEEe
Confidence 999863 1138899999999999 89999999999997653
No 84
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.32 E-value=1.2e-11 Score=115.71 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=42.0
Q ss_pred CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
..||+|.||+.+++.+ ++++++++||||+.. +|+.+|+++|++++..
T Consensus 176 ~gKP~~~~~~~~~~~~----~~~~~~~~~VGD~~~---------------~Di~~a~~~G~~~v~v 222 (249)
T TIGR01457 176 IGKPNAIIMEKAVEHL----GTEREETLMVGDNYL---------------TDIRAGIDAGIDTLLV 222 (249)
T ss_pred cCCChHHHHHHHHHHc----CCCcccEEEECCCch---------------hhHHHHHHcCCcEEEE
Confidence 3699999999999985 689999999999962 7999999999998655
No 85
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.31 E-value=1.3e-11 Score=117.44 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=41.4
Q ss_pred CCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 119 RKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 119 rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
.||+|.||+.+++++ ++++++++||||+.. +|+++|+++||+++..
T Consensus 201 gKP~p~~~~~~~~~~----~~~~~~~lmIGD~~~---------------tDI~~A~~aGi~si~V 246 (279)
T TIGR01452 201 GKPSPYMFECITENF----SIDPARTLMVGDRLE---------------TDILFGHRCGMTTVLV 246 (279)
T ss_pred CCCCHHHHHHHHHHh----CCChhhEEEECCChH---------------HHHHHHHHcCCcEEEE
Confidence 699999999999986 689999999999952 8999999999998655
No 86
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.30 E-value=6.7e-13 Score=116.83 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=68.4
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE 132 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~ 132 (369)
++||+.+.|+ +++|+||.+ ...+...++.+|+. |+.+++.+.....||+|.+|+.++++
T Consensus 91 ~~~g~~~~L~-------~~~i~Tn~~------------~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~ 151 (175)
T TIGR01493 91 PWPDSAAALA-------RVAILSNAS------------HWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDT 151 (175)
T ss_pred CCCchHHHHH-------HHhhhhCCC------------HHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHH
Confidence 5788888887 378999943 23455667888874 78778888778899999999999999
Q ss_pred hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhC
Q psy4598 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNL 176 (369)
Q Consensus 133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~ 176 (369)
+ ++++++|+||||+. .|+.+|+++
T Consensus 152 ~----~~~p~~~l~vgD~~----------------~Di~~A~~~ 175 (175)
T TIGR01493 152 V----GLPPDRVLMVAAHQ----------------WDLIGARKF 175 (175)
T ss_pred H----CCCHHHeEeEecCh----------------hhHHHHhcC
Confidence 6 78999999999998 899999864
No 87
>PLN02645 phosphoglycolate phosphatase
Probab=99.27 E-value=2.4e-11 Score=117.32 Aligned_cols=48 Identities=27% Similarity=0.368 Sum_probs=41.2
Q ss_pred CCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcC
Q psy4598 23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIG 83 (369)
Q Consensus 23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~ 83 (369)
.+.|+++||+||||..... ++||+.++|++|+++|++++++||.+.-.
T Consensus 26 ~~~~~~~~D~DGtl~~~~~-------------~~~ga~e~l~~lr~~g~~~~~~TN~~~~~ 73 (311)
T PLN02645 26 DSVETFIFDCDGVIWKGDK-------------LIEGVPETLDMLRSMGKKLVFVTNNSTKS 73 (311)
T ss_pred HhCCEEEEeCcCCeEeCCc-------------cCcCHHHHHHHHHHCCCEEEEEeCCCCCC
Confidence 4578999999999986431 68999999999999999999999987443
No 88
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.26 E-value=3.3e-11 Score=106.06 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=89.8
Q ss_pred CCceEEEEecCCceeecCCCCCCCC-CccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598 23 NSAKIASFDLDGTLITTKSGKVFPV-DTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK 101 (369)
Q Consensus 23 ~~~k~~~fDlDgTLi~~~sg~~~~~-~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~ 101 (369)
...|.++||.||||.+. ..|.. ....++.+.--=...|+.|+++|++++|+||++ ...+..+++
T Consensus 5 ~~i~~~v~d~dGv~tdg---~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~------------~~~~~~~l~ 69 (169)
T TIGR02726 5 KNIKLVILDVDGVMTDG---RIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKK------------SGAVRHRAE 69 (169)
T ss_pred ccCeEEEEeCceeeECC---eEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCC------------cHHHHHHHH
Confidence 34799999999999854 34433 334455444334567999999999999999954 234566788
Q ss_pred HcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598 102 SLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 102 ~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~ 181 (369)
.+|+. ..+- ..||+|.+++.+++++ ++++++++||||+. .|+.+++++|+.+.
T Consensus 70 ~lgi~-~~f~------~~kpkp~~~~~~~~~l----~~~~~ev~~iGD~~----------------nDi~~~~~ag~~~a 122 (169)
T TIGR02726 70 ELKIK-RFHE------GIKKKTEPYAQMLEEM----NISDAEVCYVGDDL----------------VDLSMMKRVGLAVA 122 (169)
T ss_pred HCCCc-EEEe------cCCCCHHHHHHHHHHc----CcCHHHEEEECCCH----------------HHHHHHHHCCCeEE
Confidence 88875 2221 1389999999999986 78999999999999 89999999999985
Q ss_pred C
Q psy4598 182 T 182 (369)
Q Consensus 182 ~ 182 (369)
-
T Consensus 123 m 123 (169)
T TIGR02726 123 V 123 (169)
T ss_pred C
Confidence 3
No 89
>PRK14527 adenylate kinase; Provisional
Probab=99.26 E-value=3.9e-11 Score=107.63 Aligned_cols=99 Identities=15% Similarity=0.282 Sum_probs=77.7
Q ss_pred cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-h-------H----------------HHHHHHHHHHHhC--C
Q psy4598 270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-S-------W----------------QKCVSVMKAALDS--G 323 (369)
Q Consensus 270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-~-------~----------------~~~~~~~~~~l~~--g 323 (369)
.++++|+++|+|||||||+|+.|++.+++.+++.|++- . + +.+...+.+.+.. +
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~ 83 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEP 83 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCC
Confidence 45789999999999999999999999999999987652 1 0 1123334444443 4
Q ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCeEE-EEEEeCCHHHHHHHc
Q psy4598 324 LSVVVDNTNPDKESRHRYIEAAKQHGVRCI-AVHMNISKEHAKHNI 368 (369)
Q Consensus 324 ~~vIiD~tn~~~~~r~~~~~la~~~~~~v~-~v~l~~~~e~~~~Rn 368 (369)
..+|+|+...+..++..+..+++..+.++. ++++++|.+++.+|-
T Consensus 84 ~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl 129 (191)
T PRK14527 84 VRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRI 129 (191)
T ss_pred CcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHH
Confidence 579999977788888888888888887764 689999999999883
No 90
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.26 E-value=9.1e-12 Score=114.13 Aligned_cols=94 Identities=13% Similarity=0.113 Sum_probs=70.3
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEE------EecCCCCCCCCchhHH--
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMF------VATQYDRYRKPVPGMW-- 126 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~------~~~~~~~~rKP~~gm~-- 126 (369)
++||+.+.|+.|+++|++++|+||.. ...++.+++.+ ++.+.+ +..+.....||.|..+
T Consensus 75 l~pG~~e~l~~l~~~g~~~~IvS~~~------------~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~ 141 (219)
T PRK09552 75 IREGFHEFVQFVKENNIPFYVVSGGM------------DFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHC 141 (219)
T ss_pred cCcCHHHHHHHHHHcCCeEEEECCCc------------HHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccc
Confidence 68999999999999999999999942 34566677776 532222 2333344567776542
Q ss_pred --------HHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598 127 --------EYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 127 --------~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~ 181 (369)
..+++++ +.++++++||||+. +|+.+|+++|+.+.
T Consensus 142 ~~~~~~~K~~~l~~~----~~~~~~~i~iGDs~----------------~Di~aa~~Ag~~~a 184 (219)
T PRK09552 142 QNHCGCCKPSLIRKL----SDTNDFHIVIGDSI----------------TDLEAAKQADKVFA 184 (219)
T ss_pred cccCCCchHHHHHHh----ccCCCCEEEEeCCH----------------HHHHHHHHCCccee
Confidence 4566665 57788999999999 89999999999776
No 91
>PRK14532 adenylate kinase; Provisional
Probab=99.25 E-value=4.9e-11 Score=106.55 Aligned_cols=93 Identities=10% Similarity=0.235 Sum_probs=73.0
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH-----------HH------------HHHHHHHHH---hCCCcEE
Q psy4598 275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW-----------QK------------CVSVMKAAL---DSGLSVV 327 (369)
Q Consensus 275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~-----------~~------------~~~~~~~~l---~~g~~vI 327 (369)
|+|+|+|||||||+|+.|++.+++.+|+.|++ +.. +. ..+.+.+.+ ..+..+|
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~v 82 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGAI 82 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcEE
Confidence 78999999999999999999999999999655 310 00 111122222 3456899
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCeE-EEEEEeCCHHHHHHH
Q psy4598 328 VDNTNPDKESRHRYIEAAKQHGVRC-IAVHMNISKEHAKHN 367 (369)
Q Consensus 328 iD~tn~~~~~r~~~~~la~~~~~~v-~~v~l~~~~e~~~~R 367 (369)
+|++..+..++..+.++++..+..+ .+++|++|.+++.+|
T Consensus 83 ldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~R 123 (188)
T PRK14532 83 FDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIER 123 (188)
T ss_pred EeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 9999999999999988888888765 799999999999887
No 92
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.23 E-value=6.4e-11 Score=105.13 Aligned_cols=94 Identities=15% Similarity=0.268 Sum_probs=70.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH-----------H------------HHHHHHHHHHhC--CCcEE
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW-----------Q------------KCVSVMKAALDS--GLSVV 327 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~-----------~------------~~~~~~~~~l~~--g~~vI 327 (369)
+|+|+|+|||||||+|+.|++.+++.+|+.+++ +.. + .....+.+.+.. +..+|
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~v 80 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFL 80 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence 489999999999999999999999999998544 311 0 112233333332 56899
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 328 VDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 328 iD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
+|+...+.+.+..|.+++.....+-.++++++|.+++.+|
T Consensus 81 lDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R 120 (183)
T TIGR01359 81 IDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKR 120 (183)
T ss_pred EeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 9999988888888887764332333589999999999887
No 93
>PLN02954 phosphoserine phosphatase
Probab=99.23 E-value=2.2e-11 Score=111.56 Aligned_cols=93 Identities=15% Similarity=0.186 Sum_probs=70.3
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCe-EEE----Ee--------cCC---CCC
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPV-QMF----VA--------TQY---DRY 118 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~-~~~----~~--------~~~---~~~ 118 (369)
++||+.+.|+.|+++|++++|+||. .+..++.+++.+|++. .++ .. ... ...
T Consensus 85 l~pg~~e~l~~l~~~g~~~~IvS~~------------~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~ 152 (224)
T PLN02954 85 LSPGIPELVKKLRARGTDVYLVSGG------------FRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSR 152 (224)
T ss_pred CCccHHHHHHHHHHCCCEEEEECCC------------cHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccC
Confidence 5799999999999999999999993 2345677788888852 121 11 110 123
Q ss_pred CCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598 119 RKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 119 rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~ 181 (369)
.+|+|.+++.+.+++ + .++++||||+. +|+.+|+++|+.++
T Consensus 153 ~~~K~~~i~~~~~~~----~--~~~~i~iGDs~----------------~Di~aa~~~~~~~~ 193 (224)
T PLN02954 153 SGGKAEAVQHIKKKH----G--YKTMVMIGDGA----------------TDLEARKPGGADLF 193 (224)
T ss_pred CccHHHHHHHHHHHc----C--CCceEEEeCCH----------------HHHHhhhcCCCCEE
Confidence 577888999888764 3 36899999999 89999999888864
No 94
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.23 E-value=2.6e-11 Score=112.88 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=40.0
Q ss_pred CCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCC
Q psy4598 22 CNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQG 80 (369)
Q Consensus 22 ~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~ 80 (369)
..+.+.++||+||||.... .++||+.+.|++|+++|++++|+||.+
T Consensus 5 ~~~~~~~~~D~dG~l~~~~-------------~~~pga~e~L~~L~~~G~~~~ivTN~~ 50 (242)
T TIGR01459 5 INDYDVFLLDLWGVIIDGN-------------HTYPGAVQNLNKIIAQGKPVYFVSNSP 50 (242)
T ss_pred hhcCCEEEEecccccccCC-------------ccCccHHHHHHHHHHCCCEEEEEeCCC
Confidence 3567899999999998643 169999999999999999999999964
No 95
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.21 E-value=1.2e-10 Score=102.76 Aligned_cols=93 Identities=16% Similarity=0.242 Sum_probs=71.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----------------HHHHHHHHHHHHhCCCcEEEeC
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----------------WQKCVSVMKAALDSGLSVVVDN 330 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vIiD~ 330 (369)
..+|+|+|+|||||||+++.|+..+ ++.+++.|.++. ++.+...+......|..||+|+
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi~~~ 83 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVLVSA 83 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 4689999999999999999999875 367899998642 1222334444556788899999
Q ss_pred CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 331 TNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 331 tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
+++....|..+..++ ..+.+||+++|.+++.+|+
T Consensus 84 ~~~~~~~~~~l~~~~----~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 84 ISPYRETREEVRANI----GNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred CCCCHHHHHHHHhhc----CCeEEEEEcCCHHHHHHhC
Confidence 988777776665543 3578999999999999986
No 96
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.21 E-value=9.4e-11 Score=108.51 Aligned_cols=125 Identities=14% Similarity=0.194 Sum_probs=83.9
Q ss_pred CCCce-EEEEecCCceeecCCCCC-----CCCCc-----------------cccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598 22 CNSAK-IASFDLDGTLITTKSGKV-----FPVDT-----------------HDWKLLFSNIESVLKQYLDDGYKLVIFTN 78 (369)
Q Consensus 22 ~~~~k-~~~fDlDgTLi~~~sg~~-----~~~~~-----------------~d~~~~~p~v~~~L~~L~~~G~~i~i~TN 78 (369)
..+.+ .+.||+|+|++.+..... |..+. .....++||+.+.|+.|+++|++|+++||
T Consensus 59 ~~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTn 138 (237)
T PRK11009 59 EGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITG 138 (237)
T ss_pred cCCCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeC
Confidence 34445 899999999997532111 11111 11233678899999999999999999999
Q ss_pred CCCcCCCCCCHHHHHHHHHHHHHHcCCC----eEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccc
Q psy4598 79 QGAIGRKKMSTRDFQAKAEKIIKSLNVP----VQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRA 154 (369)
Q Consensus 79 q~gi~~~~~~~~~~~~~i~~~l~~l~i~----~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~ 154 (369)
.+. .....-...+++.+|+| |.++++.+. ..||.+.. .++++ ++ ++||||+.
T Consensus 139 R~~--------~k~~~t~~~Llk~~gip~~~~f~vil~gd~--~~K~~K~~---~l~~~----~i----~I~IGDs~--- 194 (237)
T PRK11009 139 RTA--------TKTETVSKTLADDFHIPADNMNPVIFAGDK--PGQYTKTQ---WLKKK----NI----RIFYGDSD--- 194 (237)
T ss_pred CCC--------cccHHHHHHHHHHcCCCcccceeEEEcCCC--CCCCCHHH---HHHhc----CC----eEEEcCCH---
Confidence 531 11122345566778985 345555543 36777653 33443 33 89999999
Q ss_pred cccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 155 ANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 155 ~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
+|+++|+++|++++-.
T Consensus 195 -------------~Di~aA~~AGi~~I~v 210 (237)
T PRK11009 195 -------------NDITAAREAGARGIRI 210 (237)
T ss_pred -------------HHHHHHHHcCCcEEEE
Confidence 8999999999998754
No 97
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.21 E-value=6e-11 Score=105.90 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=83.1
Q ss_pred CceEEEEecCCceeecCCCCCCCCC-ccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHH
Q psy4598 24 SAKIASFDLDGTLITTKSGKVFPVD-THDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKS 102 (369)
Q Consensus 24 ~~k~~~fDlDgTLi~~~sg~~~~~~-~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~ 102 (369)
+.|+++||+||||+... .|... ...+..+.-.=...|+.|+++|++++|+||.+ ...+..+++.
T Consensus 20 ~ikli~~D~Dgtl~~~~---i~~~~~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~------------~~~v~~~l~~ 84 (183)
T PRK09484 20 NIRLLICDVDGVFSDGL---IYMGNNGEELKAFNVRDGYGIRCLLTSGIEVAIITGRK------------SKLVEDRMTT 84 (183)
T ss_pred CceEEEEcCCeeeecCE---EEEcCCCCEEEEEeccchHHHHHHHHCCCEEEEEeCCC------------cHHHHHHHHH
Confidence 47899999999998642 12111 11122111111257888999999999999943 2345667888
Q ss_pred cCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598 103 LNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 103 l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~ 181 (369)
+|+.. ++. ..+|.+..+..+++++ ++++++++||||+. .|+.+|+++|+.+.
T Consensus 85 lgl~~--~f~-----g~~~k~~~l~~~~~~~----gl~~~ev~~VGDs~----------------~D~~~a~~aG~~~~ 136 (183)
T PRK09484 85 LGITH--LYQ-----GQSNKLIAFSDLLEKL----AIAPEQVAYIGDDL----------------IDWPVMEKVGLSVA 136 (183)
T ss_pred cCCce--eec-----CCCcHHHHHHHHHHHh----CCCHHHEEEECCCH----------------HHHHHHHHCCCeEe
Confidence 88742 221 2356789999999986 78999999999999 89999999999964
No 98
>PRK14531 adenylate kinase; Provisional
Probab=99.21 E-value=1.5e-10 Score=103.27 Aligned_cols=98 Identities=10% Similarity=0.174 Sum_probs=74.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-------H----HH------------HHHHHHHHHh--CCC
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-------W----QK------------CVSVMKAALD--SGL 324 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-------~----~~------------~~~~~~~~l~--~g~ 324 (369)
|+.-|+++|+|||||||+++.|++.+++.+|+.+++ +. + +. +.....+.+. .+.
T Consensus 1 ~~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~ 80 (183)
T PRK14531 1 MKQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSG 80 (183)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCC
Confidence 345689999999999999999999999999998554 31 0 00 1122222332 355
Q ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCeE-EEEEEeCCHHHHHHHc
Q psy4598 325 SVVVDNTNPDKESRHRYIEAAKQHGVRC-IAVHMNISKEHAKHNI 368 (369)
Q Consensus 325 ~vIiD~tn~~~~~r~~~~~la~~~~~~v-~~v~l~~~~e~~~~Rn 368 (369)
.+|+|+...+..++..+.+++...+.++ .++++++|.+++.+|-
T Consensus 81 g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl 125 (183)
T PRK14531 81 GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERL 125 (183)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHh
Confidence 7999999999999998888888877665 4899999999999883
No 99
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.21 E-value=5.2e-11 Score=109.26 Aligned_cols=96 Identities=11% Similarity=0.131 Sum_probs=74.1
Q ss_pred cccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc---CC--CeEEEEecCCCCCCCCchhHHHH
Q psy4598 54 LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL---NV--PVQMFVATQYDRYRKPVPGMWEY 128 (369)
Q Consensus 54 ~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l---~i--~~~~~~~~~~~~~rKP~~gm~~~ 128 (369)
.+||++.+.|++|+++|++++|+||.+. .. ...+++.. ++ .|+.++... ..+||+|.+|..
T Consensus 95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s~--------~~----~~~~~~~~~~~~L~~~f~~~fd~~--~g~KP~p~~y~~ 160 (220)
T TIGR01691 95 HLYPDVPPALEAWLQLGLRLAVYSSGSV--------PA----QKLLFGHSDAGNLTPYFSGYFDTT--VGLKTEAQSYVK 160 (220)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEEeCCCH--------HH----HHHHHhhccccchhhhcceEEEeC--cccCCCHHHHHH
Confidence 3799999999999999999999999541 11 12223332 22 255444332 247999999999
Q ss_pred HHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 129 LSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 129 ~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
+++++ ++++++++||||+. .|+++|+++||+++..
T Consensus 161 i~~~l----gv~p~e~lfVgDs~----------------~Di~AA~~AG~~ti~v 195 (220)
T TIGR01691 161 IAGQL----GSPPREILFLSDII----------------NELDAARKAGLHTGQL 195 (220)
T ss_pred HHHHh----CcChhHEEEEeCCH----------------HHHHHHHHcCCEEEEE
Confidence 99996 78999999999998 8999999999998643
No 100
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.20 E-value=1.4e-10 Score=104.78 Aligned_cols=100 Identities=21% Similarity=0.272 Sum_probs=80.7
Q ss_pred ccccccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----------------HHHHHHHHHHHHhCCCc
Q psy4598 267 MKAALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----------------WQKCVSVMKAALDSGLS 325 (369)
Q Consensus 267 ~~~~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~ 325 (369)
..++.+.+|+|+|+|||||||+++.|+..+ +..+++.|.++. +..+...+...+..|..
T Consensus 19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~G~~ 98 (198)
T PRK03846 19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDAGLV 98 (198)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHHHHHHHHHHHhhCCCE
Confidence 344567899999999999999999999864 478888887631 33444556777788988
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 326 VVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 326 vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
||.+..++.++.|+.+++++++. .+.+||+++|.+++.+|+
T Consensus 99 VI~~~~~~~~~~R~~~r~~l~~~--~~i~V~L~~~~e~~~~R~ 139 (198)
T PRK03846 99 VLTAFISPHRAERQMVRERLGEG--EFIEVFVDTPLAICEARD 139 (198)
T ss_pred EEEEeCCCCHHHHHHHHHHcccC--CEEEEEEcCCHHHHHhcC
Confidence 88888888899999999988765 466899999999999984
No 101
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.19 E-value=1.2e-10 Score=112.87 Aligned_cols=118 Identities=13% Similarity=0.151 Sum_probs=89.6
Q ss_pred CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHH-
Q psy4598 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKS- 102 (369)
Q Consensus 24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~- 102 (369)
..|++++|+|+||+...-|..-..+. .....||++.+.|++|+++|++++|+||.+ ...+..+++.
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i-~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~------------~~~a~~~l~~~ 68 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNL-NLSPLHKTLQEKIKTLKKQGFLLALASKND------------EDDAKKVFERR 68 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCcccc-ccCccHHHHHHHHHHHHhCCCEEEEEcCCC------------HHHHHHHHHhC
Confidence 46999999999998643121111111 112258999999999999999999999953 2345566777
Q ss_pred ---cCCC--eEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCC
Q psy4598 103 ---LNVP--VQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLN 177 (369)
Q Consensus 103 ---l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~G 177 (369)
++++ |..+.+. .||+|..+..+++++ ++++++++||||+. .|+..+++++
T Consensus 69 ~~~~~~~~~f~~~~~~-----~~pk~~~i~~~~~~l----~i~~~~~vfidD~~----------------~d~~~~~~~l 123 (320)
T TIGR01686 69 KDFILQAEDFDARSIN-----WGPKSESLRKIAKKL----NLGTDSFLFIDDNP----------------AERANVKITL 123 (320)
T ss_pred ccccCcHHHeeEEEEe-----cCchHHHHHHHHHHh----CCCcCcEEEECCCH----------------HHHHHHHHHC
Confidence 6764 6655443 589999999999996 68999999999999 8999999976
Q ss_pred CC
Q psy4598 178 LA 179 (369)
Q Consensus 178 i~ 179 (369)
-.
T Consensus 124 p~ 125 (320)
T TIGR01686 124 PV 125 (320)
T ss_pred CC
Confidence 53
No 102
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.19 E-value=2.1e-10 Score=107.88 Aligned_cols=46 Identities=13% Similarity=0.056 Sum_probs=41.5
Q ss_pred CCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 119 RKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 119 rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
+||+|.||+.+++++ ++++++++||||+.. +|+.+|+++|++++..
T Consensus 178 gKP~p~~~~~~~~~~----~~~~~~~~~vGD~~~---------------~Di~~a~~~G~~~i~v 223 (257)
T TIGR01458 178 GKPSKTFFLEALRAT----GCEPEEAVMIGDDCR---------------DDVGGAQDCGMRGIQV 223 (257)
T ss_pred cCCCHHHHHHHHHHh----CCChhhEEEECCCcH---------------HHHHHHHHcCCeEEEE
Confidence 699999999999986 689999999999962 7999999999999655
No 103
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.19 E-value=9.5e-11 Score=123.53 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=82.4
Q ss_pred ccccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----------------HHHHHHHHHHHHhCCCcEE
Q psy4598 269 AALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----------------WQKCVSVMKAALDSGLSVV 327 (369)
Q Consensus 269 ~~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vI 327 (369)
.+++.+|+|+|+|||||||+|++|++.+ ++.+|+.|.++. ++.+...+...++.|.+||
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~~~G~~Vi 536 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMADAGLIVL 536 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 3357999999999999999999999875 568999999842 3445566667778899999
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 328 VDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 328 iD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
+|++++.+..|+.+++++++. .+.++|+++|.+++.+|+
T Consensus 537 vda~~~~~~~R~~~r~l~~~~--~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 537 VSFISPFREERELARALHGEG--EFVEVFVDTPLEVCEARD 575 (632)
T ss_pred EECCCCCHHHHHHHHHhcccC--CeEEEEECCCHHHHHhhC
Confidence 999999999999888877654 678999999999999986
No 104
>KOG2882|consensus
Probab=99.19 E-value=1.6e-10 Score=108.11 Aligned_cols=50 Identities=22% Similarity=0.241 Sum_probs=43.0
Q ss_pred CCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCC
Q psy4598 22 CNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGR 84 (369)
Q Consensus 22 ~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~ 84 (369)
..+.-.++||-||+|+.-. .+.||++++|..|++.|..++++||.+..++
T Consensus 19 l~~~DtfifDcDGVlW~g~-------------~~ipGs~e~l~~L~~~gK~i~fvTNNStksr 68 (306)
T KOG2882|consen 19 LDSFDTFIFDCDGVLWLGE-------------KPIPGSPEALNLLKSLGKQIIFVTNNSTKSR 68 (306)
T ss_pred HhhcCEEEEcCCcceeecC-------------CCCCChHHHHHHHHHcCCcEEEEeCCCcchH
Confidence 3556789999999999732 2799999999999999999999999987664
No 105
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.18 E-value=1.7e-10 Score=119.58 Aligned_cols=97 Identities=19% Similarity=0.232 Sum_probs=82.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCc------EEEeCCcchh----------------HHHHHHHHHHHHhCCCcEEEe
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNY------TTVNRDTLGS----------------WQKCVSVMKAALDSGLSVVVD 329 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~------~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vIiD 329 (369)
+.+|+|+|+|||||||+|+.|++.++. .+++.|.++. ++++...+...++.|..||+|
T Consensus 392 g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~vI~~ 471 (568)
T PRK05537 392 GFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNGGIAICA 471 (568)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 469999999999999999999998864 8999998852 222334566778889999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598 330 NTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK 369 (369)
Q Consensus 330 ~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~ 369 (369)
.+++..+.|..+++++++++ .+.+||+++|.+++.+|.+
T Consensus 472 ~~~p~~~~R~~nr~llk~~g-~fivV~L~~p~e~l~~R~r 510 (568)
T PRK05537 472 PIAPYRATRREVREMIEAYG-GFIEVHVATPLEVCEQRDR 510 (568)
T ss_pred eCCchHHHHHHHHHHHhhcC-CEEEEEEcCCHHHHHHhcc
Confidence 99999999999999998876 4678999999999999863
No 106
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.16 E-value=1.3e-10 Score=104.49 Aligned_cols=85 Identities=12% Similarity=0.155 Sum_probs=72.5
Q ss_pred HHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHHhcCC
Q psy4598 59 IESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQEKNGD 136 (369)
Q Consensus 59 v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~ 136 (369)
+.+.|+.|+++|++++|+||.+ ...+..+++.+|+. |+.+++.++... ||+|.++..+++++
T Consensus 111 ~~~~L~~l~~~g~~~~i~T~~~------------~~~~~~~l~~~gl~~~f~~~~~~~~~~~-KP~p~~~~~~~~~~--- 174 (197)
T TIGR01548 111 PKGLLRELHRAPKGMAVVTGRP------------RKDAAKFLTTHGLEILFPVQIWMEDCPP-KPNPEPLILAAKAL--- 174 (197)
T ss_pred HHHHHHHHHHcCCcEEEECCCC------------HHHHHHHHHHcCchhhCCEEEeecCCCC-CcCHHHHHHHHHHh---
Confidence 4899999999999999999943 34466778888884 777778776665 99999999999985
Q ss_pred ccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhC
Q psy4598 137 LAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNL 176 (369)
Q Consensus 137 ~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~ 176 (369)
++++++|+||||+. .|+++|+++
T Consensus 175 -~~~~~~~i~vGD~~----------------~Di~aA~~a 197 (197)
T TIGR01548 175 -GVEACHAAMVGDTV----------------DDIITGRKA 197 (197)
T ss_pred -CcCcccEEEEeCCH----------------HHHHHHHhC
Confidence 78999999999999 899999975
No 107
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.16 E-value=1.5e-10 Score=102.19 Aligned_cols=95 Identities=19% Similarity=0.249 Sum_probs=68.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC--CcEEEeCCcchh-----------------------------HHHHHHHHHHHHh
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL--NYTTVNRDTLGS-----------------------------WQKCVSVMKAALD 321 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~--~~~~i~~D~~~~-----------------------------~~~~~~~~~~~l~ 321 (369)
++|+|.|+|.|||||+|++|++.+ .+.+++.|.+.. +......+...++
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a~ 81 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMAR 81 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999986 578999998731 3334555667778
Q ss_pred CCCcEEEeCCCCCHHH-HHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598 322 SGLSVVVDNTNPDKES-RHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK 369 (369)
Q Consensus 322 ~g~~vIiD~tn~~~~~-r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~ 369 (369)
.|.+||+|........ .+.+.++. .++++.+|-+.||++++.+|++
T Consensus 82 aG~~VIvD~v~~~~~~l~d~l~~~L--~~~~vl~VgV~Cpleil~~RE~ 128 (174)
T PF07931_consen 82 AGNNVIVDDVFLGPRWLQDCLRRLL--AGLPVLFVGVRCPLEILERRER 128 (174)
T ss_dssp TT-EEEEEE--TTTHHHHHHHHHHH--TTS-EEEEEEE--HHHHHHHHH
T ss_pred CCCCEEEecCccCcHHHHHHHHHHh--CCCceEEEEEECCHHHHHHHHH
Confidence 9999999988877654 44444544 3899999999999999999863
No 108
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=99.15 E-value=1.2e-10 Score=106.59 Aligned_cols=98 Identities=20% Similarity=0.275 Sum_probs=68.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCC-----cEEEeCCcch----------------------h----HHHHHHHHHHH
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLN-----YTTVNRDTLG----------------------S----WQKCVSVMKAA 319 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~-----~~~i~~D~~~----------------------~----~~~~~~~~~~~ 319 (369)
.+.+|+|+|+||.|||++|++|++.++ +.+.+..++| . ...+.+.+...
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~~~ 90 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDLIEW 90 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999998763 3444433332 0 12234444555
Q ss_pred Hh--CCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 320 LD--SGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 320 l~--~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
+. .|...|+|+||.+++.|+.+.+.++++++.+.++...|+++..+++|
T Consensus 91 l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~N 141 (222)
T PF01591_consen 91 LQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERN 141 (222)
T ss_dssp HHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHH
T ss_pred HhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHH
Confidence 55 56788999999999999999999999999999999999999888876
No 109
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.14 E-value=6.2e-10 Score=103.32 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=40.8
Q ss_pred CCCCchhHHHHHHHHhcCCccccCCcc-EEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 118 YRKPVPGMWEYLSQEKNGDLAIDISQS-FYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s-~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
+.||+|.||+.+++++ +++++++ +||||+.. +|+.+|+++|++++..
T Consensus 186 ~~KP~~~~~~~~~~~~----~~~~~~~~~~IGD~~~---------------~Di~~A~~~G~~~i~v 233 (236)
T TIGR01460 186 VGKPSPAIYRAALNLL----QARPERRDVMVGDNLR---------------TDILGAKNAGFDTLLV 233 (236)
T ss_pred ecCCCHHHHHHHHHHh----CCCCccceEEECCCcH---------------HHHHHHHHCCCcEEEE
Confidence 3699999999999986 6788887 99999973 7999999999998643
No 110
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.13 E-value=1.2e-10 Score=112.81 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=73.8
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCe------EEE---E-e--cCCCCCCCCc
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPV------QMF---V-A--TQYDRYRKPV 122 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~------~~~---~-~--~~~~~~rKP~ 122 (369)
++||+.+.|+.|++.|++++|+|+.. ...++.+++.+|+.. .+. + + .+....+||+
T Consensus 182 l~pGa~elL~~Lk~~G~~~aIvSgg~------------~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K 249 (322)
T PRK11133 182 LMPGLTELVLKLQALGWKVAIASGGF------------TYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYK 249 (322)
T ss_pred CChhHHHHHHHHHHcCCEEEEEECCc------------chhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccH
Confidence 68999999999999999999999921 122445566777741 110 1 1 1133467999
Q ss_pred hhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598 123 PGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 123 ~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~ 181 (369)
+.++..+++++ +++++++++|||.+ +|+.++.++|+.+.
T Consensus 250 ~~~L~~la~~l----gi~~~qtIaVGDg~----------------NDl~m~~~AGlgiA 288 (322)
T PRK11133 250 ADTLTRLAQEY----EIPLAQTVAIGDGA----------------NDLPMIKAAGLGIA 288 (322)
T ss_pred HHHHHHHHHHc----CCChhhEEEEECCH----------------HHHHHHHHCCCeEE
Confidence 99999999986 79999999999999 89999999999873
No 111
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.13 E-value=3e-10 Score=99.38 Aligned_cols=124 Identities=20% Similarity=0.179 Sum_probs=89.2
Q ss_pred CCCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCc--EEEEEecCCCcCCCCCCHHHHHHHHHH
Q psy4598 21 VCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY--KLVIFTNQGAIGRKKMSTRDFQAKAEK 98 (369)
Q Consensus 21 ~~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~--~i~i~TNq~gi~~~~~~~~~~~~~i~~ 98 (369)
.....|.++||.|+||....+. .+.|.+.+.++++++.+. +|+|+||..|..... -...++.
T Consensus 37 k~~Gik~li~DkDNTL~~~~~~-----------~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~-----~~~~a~~ 100 (168)
T PF09419_consen 37 KKKGIKALIFDKDNTLTPPYED-----------EIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDP-----DGERAEA 100 (168)
T ss_pred hhcCceEEEEcCCCCCCCCCcC-----------cCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCc-----cHHHHHH
Confidence 3456799999999999866542 268999999999999876 599999987654311 1234566
Q ss_pred HHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcC-CccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCC
Q psy4598 99 IIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNG-DLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLN 177 (369)
Q Consensus 99 ~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~-~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~G 177 (369)
+-+.+|+|+-.. ...|| +.+..+++.+.. +....+++.+||||+.- +|+.+|..+|
T Consensus 101 ~~~~lgIpvl~h------~~kKP--~~~~~i~~~~~~~~~~~~p~eiavIGDrl~---------------TDVl~gN~~G 157 (168)
T PF09419_consen 101 LEKALGIPVLRH------RAKKP--GCFREILKYFKCQKVVTSPSEIAVIGDRLF---------------TDVLMGNRMG 157 (168)
T ss_pred HHHhhCCcEEEe------CCCCC--ccHHHHHHHHhhccCCCCchhEEEEcchHH---------------HHHHHhhccC
Confidence 678889874322 15687 555555554421 01246899999999995 9999999999
Q ss_pred CCccCc
Q psy4598 178 LAFFTP 183 (369)
Q Consensus 178 i~f~~p 183 (369)
+-.+..
T Consensus 158 ~~tilv 163 (168)
T PF09419_consen 158 SYTILV 163 (168)
T ss_pred ceEEEE
Confidence 887644
No 112
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.11 E-value=3.8e-10 Score=109.55 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=45.6
Q ss_pred hCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598 321 DSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK 369 (369)
Q Consensus 321 ~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~ 369 (369)
..+..+|+|++|.....|..+..+|+.++..+..+|+++|.++|++||+
T Consensus 125 srpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~ld~ple~~l~RN~ 173 (340)
T TIGR03575 125 SRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPVESCLLRNK 173 (340)
T ss_pred hCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEEeCCHHHHHHHHh
Confidence 4555799999999999999999999999999999999999999999984
No 113
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.10 E-value=3.6e-10 Score=100.11 Aligned_cols=92 Identities=11% Similarity=0.110 Sum_probs=68.7
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecC------------------
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQ------------------ 114 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~------------------ 114 (369)
++|++.+.|+.|++.|++++|+||.. ...++.+++.+++. |+.+++..
T Consensus 73 l~~g~~~ll~~l~~~g~~~~i~S~~~------------~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~ 140 (188)
T TIGR01489 73 IDPGFKEFIAFIKEHGIDFIVISDGN------------DFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHG 140 (188)
T ss_pred CCccHHHHHHHHHHcCCcEEEEeCCc------------HHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCc
Confidence 57999999999999999999999932 23456667777773 66555432
Q ss_pred --CCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598 115 --YDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 115 --~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~ 181 (369)
...+..+++.+++.+.++ . +++++||||+. +|+.+|+++++-|.
T Consensus 141 ~~~~~~g~~K~~~~~~~~~~------~-~~~~i~iGD~~----------------~D~~aa~~~d~~~a 186 (188)
T TIGR01489 141 CCSCPCGCCKGKVIHKLSEP------K-YQHIIYIGDGV----------------TDVCPAKLSDVVFA 186 (188)
T ss_pred cCcCCCCCCHHHHHHHHHhh------c-CceEEEECCCc----------------chhchHhcCCcccc
Confidence 122333456777777654 1 78999999999 89999999988764
No 114
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.08 E-value=4.8e-10 Score=101.17 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=63.9
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecC-CC---CCCCCchhHHHH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQ-YD---RYRKPVPGMWEY 128 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~-~~---~~rKP~~gm~~~ 128 (369)
++||+.+.|+.|+++ ++++|+||. ....++.+++.+|++ |...++.. +. ...+|.|.....
T Consensus 69 ~~pg~~e~L~~L~~~-~~~~IvS~~------------~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~ 135 (205)
T PRK13582 69 PLPGAVEFLDWLRER-FQVVILSDT------------FYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQ 135 (205)
T ss_pred CCCCHHHHHHHHHhc-CCEEEEeCC------------cHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHH
Confidence 589999999999999 999999993 234566778888875 33222221 11 111233333445
Q ss_pred HHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598 129 LSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF 180 (369)
Q Consensus 129 ~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f 180 (369)
+++.+ +..+++++||||+. +|+.+|.++|+..
T Consensus 136 ~l~~~----~~~~~~~v~iGDs~----------------~D~~~~~aa~~~v 167 (205)
T PRK13582 136 AVKAL----KSLGYRVIAAGDSY----------------NDTTMLGEADAGI 167 (205)
T ss_pred HHHHH----HHhCCeEEEEeCCH----------------HHHHHHHhCCCCE
Confidence 55554 34568999999999 8999999999754
No 115
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.08 E-value=5.8e-10 Score=98.59 Aligned_cols=93 Identities=20% Similarity=0.215 Sum_probs=65.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh---------HHHH------HHHHHHHHhCCCcEEEeCC
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS---------WQKC------VSVMKAALDSGLSVVVDNT 331 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~---------~~~~------~~~~~~~l~~g~~vIiD~t 331 (369)
+.+|+|+|+|||||||+++.+++.+ ++.+++.|.++. .... ...+......|..||+|++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI~~~~ 86 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQSRIEMALKRAKLAKFLADQGMIVIVTTI 86 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 4699999999999999999998876 378888888752 1111 1122223467889999988
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 332 NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 332 n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
+...+.+.... ....+...||+++|.+++.+|.
T Consensus 87 ~~~~~~~~~~~----~~~~~~~~v~l~~~~e~~~~R~ 119 (176)
T PRK05541 87 SMFDEIYAYNR----KHLPNYFEVYLKCDMEELIRRD 119 (176)
T ss_pred CcHHHHHHHHH----hhcCCeEEEEEeCCHHHHHHhc
Confidence 86444443333 3333457899999999999985
No 116
>KOG0635|consensus
Probab=99.07 E-value=2.8e-10 Score=96.28 Aligned_cols=94 Identities=21% Similarity=0.281 Sum_probs=76.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----------------HHHHHHHHHHHHhCCCcEEEeCC
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----------------WQKCVSVMKAALDSGLSVVVDNT 331 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vIiD~t 331 (369)
.+|+|+|++||||||+|-+|.+.+ -.+.++.|.++. .++..+.++-..+.|...|-.-.
T Consensus 32 cviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENIRRigeVaKLFADag~iciaSlI 111 (207)
T KOG0635|consen 32 CVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNENIRRIGEVAKLFADAGVICIASLI 111 (207)
T ss_pred cEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhhhHHHHHHHHHHHhccceeeeehhc
Confidence 489999999999999999999874 367889998851 34556667777777766666667
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 332 NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 332 n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
.+.+..|+..+++..+. .++.|++++|+++|.+|+
T Consensus 112 SPYR~dRdacRel~~~~--~FiEvfmdvpl~vcE~RD 146 (207)
T KOG0635|consen 112 SPYRKDRDACRELLPEG--DFIEVFMDVPLEVCEARD 146 (207)
T ss_pred CchhccHHHHHHhccCC--CeEEEEecCcHHHhhccC
Confidence 77888898888887654 889999999999999986
No 117
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.06 E-value=1.6e-09 Score=96.73 Aligned_cols=94 Identities=14% Similarity=0.215 Sum_probs=72.3
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH-----------------------HHHHHHHHHHHhC---CCcEE
Q psy4598 275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW-----------------------QKCVSVMKAALDS---GLSVV 327 (369)
Q Consensus 275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~-----------------------~~~~~~~~~~l~~---g~~vI 327 (369)
|+++|+|||||||+|+.|++.+++.+|+.|++ +.. +.+...+...+.. +..+|
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~v 81 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGFI 81 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCEE
Confidence 79999999999999999999999999999875 211 0112333444443 56899
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 328 VDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 328 iD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
+|+...+..+...+.+.....+.+..+|++++|.+++.+|-
T Consensus 82 ldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl 122 (194)
T cd01428 82 LDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERI 122 (194)
T ss_pred EeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence 99987777777777776655557778999999999998883
No 118
>KOG3354|consensus
Probab=99.06 E-value=8.9e-10 Score=93.68 Aligned_cols=96 Identities=24% Similarity=0.313 Sum_probs=79.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------------hH---HHHHHHHHHHHhCCCcEEEeC
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------------SW---QKCVSVMKAALDSGLSVVVDN 330 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~---~~~~~~~~~~l~~g~~vIiD~ 330 (369)
+-+|+++|++||||||++++|.+.+++.+++.|++. .| ..+...++..+..|+.||+-+
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~vVlAC 91 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQGVVLAC 91 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCeEEEEh
Confidence 348999999999999999999999999999999983 13 345666777778899999999
Q ss_pred CCCCHHHHHHHHHHHH------hcCCeEEEEEEeCCHHHHHHH
Q psy4598 331 TNPDKESRHRYIEAAK------QHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 331 tn~~~~~r~~~~~la~------~~~~~v~~v~l~~~~e~~~~R 367 (369)
..+.+.+|+-++.-.+ .....++++++..+.|++..|
T Consensus 92 SaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~R 134 (191)
T KOG3354|consen 92 SALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKR 134 (191)
T ss_pred HHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHH
Confidence 9998888887766333 234679999999999999887
No 119
>PRK07261 topology modulation protein; Provisional
Probab=99.04 E-value=1.1e-09 Score=96.62 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=65.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch--------hHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHH
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG--------SWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAA 345 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la 345 (369)
-|+++|+|||||||+|+.|++.++..+++.|.+. ..+.+...+.+++.++. +|+|+++..... ...+..|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-wIidg~~~~~~~-~~~l~~a 79 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLLKHD-WIIDGNYSWCLY-EERMQEA 79 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHhCCC-EEEcCcchhhhH-HHHHHHC
Confidence 3789999999999999999999999999999873 23456666777777665 999999854222 2222222
Q ss_pred HhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 346 KQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 346 ~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
. .++++++|.++|..|.
T Consensus 80 ---d---~vI~Ld~p~~~~~~R~ 96 (171)
T PRK07261 80 ---D---QIIFLNFSRFNCLYRA 96 (171)
T ss_pred ---C---EEEEEcCCHHHHHHHH
Confidence 2 4899999999998874
No 120
>PRK06217 hypothetical protein; Validated
Probab=99.04 E-value=1.1e-09 Score=97.64 Aligned_cols=88 Identities=13% Similarity=0.170 Sum_probs=63.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------hHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------SWQKCVSVMKAALDSGLSVVVDNTNPDKESRHR 340 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------~~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r~~ 340 (369)
+-|+|+|.|||||||+|++|++.++..+++.|.+. ..+.....+.+.+..+..+|||+.... .+..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~G~~~~--~~~~ 79 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPPFTTKRPPEERLRLLLEDLRPREGWVLSGSALG--WGDP 79 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCCccccCCHHHHHHHHHHHHhcCCCEEEEccHHH--HHHH
Confidence 35899999999999999999999999999999872 122334444555656678999966532 2222
Q ss_pred HHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 341 YIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 341 ~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
+....+ .+|++++|.+++..|-
T Consensus 80 ---~~~~~d---~~i~Ld~~~~~~~~Rl 101 (183)
T PRK06217 80 ---LEPLFD---LVVFLTIPPELRLERL 101 (183)
T ss_pred ---HHhhCC---EEEEEECCHHHHHHHH
Confidence 223233 4789999999998873
No 121
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.03 E-value=3.7e-10 Score=101.64 Aligned_cols=95 Identities=13% Similarity=0.206 Sum_probs=71.2
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEE-EEecC----------CCCCCCC
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQM-FVATQ----------YDRYRKP 121 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~-~~~~~----------~~~~rKP 121 (369)
++|++.+.|+.++++|++++|+||.. ...++.+++.+|+. |.. +...+ ...++++
T Consensus 88 ~~~~~~~~l~~l~~~g~~v~ivS~s~------------~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~ 155 (202)
T TIGR01490 88 LYPEARDLIRWHKAEGHTIVLVSASL------------TILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEG 155 (202)
T ss_pred ccHHHHHHHHHHHHCCCEEEEEeCCc------------HHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChH
Confidence 57899999999999999999999932 33456667788874 211 11101 1224566
Q ss_pred chhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598 122 VPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 122 ~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~ 181 (369)
+...++.++++. ++++++|+++||+. +|+.++..+|..++
T Consensus 156 K~~~l~~~~~~~----~~~~~~~~~~gDs~----------------~D~~~~~~a~~~~~ 195 (202)
T TIGR01490 156 KVHALAELLAEE----QIDLKDSYAYGDSI----------------SDLPLLSLVGHPYV 195 (202)
T ss_pred HHHHHHHHHHHc----CCCHHHcEeeeCCc----------------ccHHHHHhCCCcEE
Confidence 677788888775 68899999999999 89999999999973
No 122
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.02 E-value=2.6e-09 Score=97.69 Aligned_cols=95 Identities=14% Similarity=0.259 Sum_probs=70.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH-----------------------HHHHHHHHHHHhC---CCcE
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW-----------------------QKCVSVMKAALDS---GLSV 326 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~-----------------------~~~~~~~~~~l~~---g~~v 326 (369)
.|++.|+|||||||+|+.|++.+++.+|+.+++ +.. +.....+.+.+.. +..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g~ 81 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNGF 81 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCCE
Confidence 388999999999999999999999999998665 210 0112223333332 3479
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcCCeE-EEEEEeCCHHHHHHHc
Q psy4598 327 VVDNTNPDKESRHRYIEAAKQHGVRC-IAVHMNISKEHAKHNI 368 (369)
Q Consensus 327 IiD~tn~~~~~r~~~~~la~~~~~~v-~~v~l~~~~e~~~~Rn 368 (369)
|||+...+..+...+.+.+...+..+ .++++++|.+++.+|-
T Consensus 82 VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl 124 (215)
T PRK00279 82 LLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERL 124 (215)
T ss_pred EEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHH
Confidence 99998777777777767666677655 7999999999998873
No 123
>PLN02200 adenylate kinase family protein
Probab=99.00 E-value=3.5e-09 Score=98.20 Aligned_cols=97 Identities=11% Similarity=0.246 Sum_probs=68.9
Q ss_pred ccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh--------H---------------HHHHHHHHHHHh--C
Q psy4598 269 AALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS--------W---------------QKCVSVMKAALD--S 322 (369)
Q Consensus 269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~--------~---------------~~~~~~~~~~l~--~ 322 (369)
+..|.+|+++|+|||||||+|+.|++.+++.||+.+++ +. + +.....+.+.+. .
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~ 119 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD 119 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence 33457899999999999999999999999999998654 31 0 111122233333 2
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 323 GLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 323 g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
+..+|+|+...+..++..+..++. -.+-.++++++|.+++.+|
T Consensus 120 ~~~~ILDG~Prt~~q~~~l~~~~~--~~pd~vi~Ld~~~e~~~~R 162 (234)
T PLN02200 120 NNKFLIDGFPRTEENRIAFERIIG--AEPNVVLFFDCPEEEMVKR 162 (234)
T ss_pred CCeEEecCCcccHHHHHHHHHHhc--cCCCEEEEEECCHHHHHHH
Confidence 457999998877776666655442 1244689999999998887
No 124
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.99 E-value=2.3e-09 Score=93.74 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=65.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------------hHHHHHHHHHHHHhCCCcEEEeCCC--
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------------SWQKCVSVMKAALDSGLSVVVDNTN-- 332 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~~~~~~~~~~~l~~g~~vIiD~tn-- 332 (369)
+-|+|+|++||||||+++.|++.++..++|.|.+- .++.+...+...+-...+.||....
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGGG~ 82 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGGGA 82 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCCcc
Confidence 34899999999999999999999999999999972 2555655554444433356665443
Q ss_pred -CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 333 -PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 333 -~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
.+++.|..+ +.++ .+||+++|.|+..+|-
T Consensus 83 v~~~enr~~l----~~~g---~vv~L~~~~e~l~~Rl 112 (172)
T COG0703 83 VLSEENRNLL----KKRG---IVVYLDAPFETLYERL 112 (172)
T ss_pred ccCHHHHHHH----HhCC---eEEEEeCCHHHHHHHh
Confidence 245555444 4445 6999999999999883
No 125
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.99 E-value=2.4e-09 Score=95.03 Aligned_cols=93 Identities=15% Similarity=0.306 Sum_probs=66.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh---------------------------HHHHHHHHHHHHhCCC
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS---------------------------WQKCVSVMKAALDSGL 324 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~---------------------------~~~~~~~~~~~l~~g~ 324 (369)
++|++.|+|||||||+++.|++.+++.+++.+++ +. ++.+...+...+..+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTSK 83 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcCC
Confidence 5899999999999999999999999999998653 11 0111122233345678
Q ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 325 SVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 325 ~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
.||+|+...+...... +.+....+..++++++|.+++.+|.
T Consensus 84 ~~i~dg~~~~~~q~~~---~~~~~~~~~~vi~l~~~~~~~~~Rl 124 (188)
T TIGR01360 84 GFLIDGYPREVKQGEE---FERRIGPPTLVLYFDCSEDTMVKRL 124 (188)
T ss_pred eEEEeCCCCCHHHHHH---HHHcCCCCCEEEEEECCHHHHHHHH
Confidence 8999998655433333 3344445678999999999998874
No 126
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.99 E-value=3.5e-09 Score=96.44 Aligned_cols=92 Identities=13% Similarity=0.204 Sum_probs=68.1
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH-----------------------HHHHHHHHHHHhC----CCcE
Q psy4598 275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW-----------------------QKCVSVMKAALDS----GLSV 326 (369)
Q Consensus 275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~-----------------------~~~~~~~~~~l~~----g~~v 326 (369)
|+|+|+|||||||+|+.|++.+++.+|+.+++ +.. +...+.+...+.. +..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~ 81 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF 81 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence 78999999999999999999999999998664 210 1123334444433 5689
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 327 VVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 327 IiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
|+|+...+..+...+.+.+.. ....+++|++|.+++.+|-
T Consensus 82 ilDGfPrt~~Qa~~l~~~~~~--~~~~vi~L~~~~~~~~~Rl 121 (210)
T TIGR01351 82 ILDGFPRTLSQAEALDALLKE--KIDAVIELDVPDEELVERL 121 (210)
T ss_pred EEeCCCCCHHHHHHHHHHhcc--CCCEEEEEECCHHHHHHHH
Confidence 999987777777666655431 3457999999999998873
No 127
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=1.9e-09 Score=91.20 Aligned_cols=87 Identities=18% Similarity=0.202 Sum_probs=70.1
Q ss_pred EcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------H---HHHHHHHHHHHhCCCcEEEeCCCCCHH
Q psy4598 278 IGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------W---QKCVSVMKAALDSGLSVVVDNTNPDKE 336 (369)
Q Consensus 278 ~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~---~~~~~~~~~~l~~g~~vIiD~tn~~~~ 336 (369)
+|.+||||||++.+|++++++.+|+.|++.. | +.+...+....+.+..+||-+..+.+.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSALKr~ 80 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACSALKRS 80 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecHHHHHH
Confidence 4899999999999999999999999999831 2 334445555566777899999998888
Q ss_pred HHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 337 SRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 337 ~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
+|+.++. ..-.+.+||++.+.+++.+|-
T Consensus 81 YRD~LR~----~~~~~~Fv~L~g~~~~i~~Rm 108 (161)
T COG3265 81 YRDLLRE----ANPGLRFVYLDGDFDLILERM 108 (161)
T ss_pred HHHHHhc----cCCCeEEEEecCCHHHHHHHH
Confidence 8877755 333589999999999999884
No 128
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.94 E-value=6e-09 Score=91.26 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=62.5
Q ss_pred EcCCCCcHHHHHHHHhccCCcEEEeCCcch--------------------hHH-HHHHHHHHHHhC-CCcEEEeCCCCCH
Q psy4598 278 IGSQGSGKSSFVSTYLKPLNYTTVNRDTLG--------------------SWQ-KCVSVMKAALDS-GLSVVVDNTNPDK 335 (369)
Q Consensus 278 ~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------------------~~~-~~~~~~~~~l~~-g~~vIiD~tn~~~ 335 (369)
+|+|||||||+++.|+..++..+++.|.+. .|. .+...+...+.. +..||+ +++..+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv-~s~~~~ 79 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIV-CSALKK 79 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEE-EecchH
Confidence 599999999999999999999999999851 011 112222222333 444555 888755
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 336 ESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 336 ~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
..| +++++.+.++.++||++|.+++.+|-
T Consensus 80 ~~r----~~~~~~~~~~~~v~l~a~~~~l~~Rl 108 (163)
T PRK11545 80 HYR----DLLREGNPNLSFIYLKGDFDVIESRL 108 (163)
T ss_pred HHH----HHHHccCCCEEEEEEECCHHHHHHHH
Confidence 544 55666889999999999999999984
No 129
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.93 E-value=3.3e-09 Score=93.19 Aligned_cols=90 Identities=14% Similarity=0.137 Sum_probs=64.0
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecC------------CCCCCC
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQ------------YDRYRK 120 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~------------~~~~rK 120 (369)
++|++.+.|+.|+++|++++|+|+. ....++.+++.+|+. +...+... .+.+..
T Consensus 74 ~~~g~~~~l~~l~~~g~~~~ivS~~------------~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 141 (177)
T TIGR01488 74 LRPGARELISWLKERGIDTVIVSGG------------FDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGE 141 (177)
T ss_pred cCcCHHHHHHHHHHCCCEEEEECCC------------cHHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcc
Confidence 5799999999999999999999993 234566777888874 22111111 122233
Q ss_pred CchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhC
Q psy4598 121 PVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNL 176 (369)
Q Consensus 121 P~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~ 176 (369)
.++.++..+.+++ ++++++++||||+. +|+.++..+
T Consensus 142 ~K~~~l~~~~~~~----~~~~~~~~~iGDs~----------------~D~~~~~~a 177 (177)
T TIGR01488 142 CKGKVLKELLEES----KITLKKIIAVGDSV----------------NDLPMLKLA 177 (177)
T ss_pred hHHHHHHHHHHHh----CCCHHHEEEEeCCH----------------HHHHHHhcC
Confidence 4456777777764 67889999999999 899988753
No 130
>PRK13948 shikimate kinase; Provisional
Probab=98.92 E-value=8.2e-09 Score=92.02 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=63.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------------hHHHHHHHH-HHHHhCCCcEEEeC-
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------------SWQKCVSVM-KAALDSGLSVVVDN- 330 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~~~~~~~~-~~~l~~g~~vIiD~- 330 (369)
.+..|+|+|++||||||+++.|++.+++.+++.|.+. .|+.+...+ .+.+..+ ..||..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~-~~VIa~G 87 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLD-YAVISLG 87 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcC-CeEEECC
Confidence 4578999999999999999999999999999999762 134444443 3333444 455553
Q ss_pred --CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 331 --TNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 331 --tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
+...++.|..+. +++ .+||+++|.+.+.+|-
T Consensus 88 gG~v~~~~n~~~l~----~~g---~vV~L~~~~e~l~~Rl 120 (182)
T PRK13948 88 GGTFMHEENRRKLL----SRG---PVVVLWASPETIYERT 120 (182)
T ss_pred CcEEcCHHHHHHHH----cCC---eEEEEECCHHHHHHHh
Confidence 344556665543 333 4789999999998873
No 131
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.92 E-value=6.6e-09 Score=90.90 Aligned_cols=90 Identities=20% Similarity=0.290 Sum_probs=58.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHH-HHHHHhCCCcEEEeCC
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSV-MKAALDSGLSVVVDNT 331 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~-~~~~l~~g~~vIiD~t 331 (369)
.+..|+|+|+|||||||+|+.|++.+++.+++.|.+.. |...... +...+. +..+||...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~-~~~~vi~~g 81 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLA-RHNLVISTG 81 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHh-cCCCEEEeC
Confidence 35689999999999999999999999999999998621 1122222 233333 333444433
Q ss_pred C---CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 332 N---PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 332 n---~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
. .....|. +.+.. ...||+++|.+.+.+|.
T Consensus 82 ~~~~~~~~~r~----~l~~~---~~~v~l~~~~~~~~~R~ 114 (175)
T PRK00131 82 GGAVLREENRA----LLRER---GTVVYLDASFEELLRRL 114 (175)
T ss_pred CCEeecHHHHH----HHHhC---CEEEEEECCHHHHHHHh
Confidence 2 1233333 22332 36799999999988774
No 132
>PRK08118 topology modulation protein; Reviewed
Probab=98.91 E-value=6e-09 Score=91.67 Aligned_cols=85 Identities=19% Similarity=0.232 Sum_probs=60.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch--------hHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHH
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG--------SWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAA 345 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la 345 (369)
-|+++|+|||||||+|+.|++.++..+++.|.+- .-+...+...+.++ +..+|+|+..... ......
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~-~~~wVidG~~~~~--~~~~l~-- 77 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVK-EDEWIIDGNYGGT--MDIRLN-- 77 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhc-CCCEEEeCCcchH--HHHHHH--
Confidence 4899999999999999999999999999999763 12233334444444 4579999876432 121122
Q ss_pred HhcCCeEEEEEEeCCHHHHHHH
Q psy4598 346 KQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 346 ~~~~~~v~~v~l~~~~e~~~~R 367 (369)
. .=.++++++|.++|..|
T Consensus 78 -~---~d~vi~Ld~p~~~~~~R 95 (167)
T PRK08118 78 -A---ADTIIFLDIPRTICLYR 95 (167)
T ss_pred -h---CCEEEEEeCCHHHHHHH
Confidence 1 22589999999998877
No 133
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.90 E-value=1.3e-08 Score=90.21 Aligned_cols=91 Identities=16% Similarity=0.211 Sum_probs=66.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh--------------------HHH-HHHHHHHHHhC-CCcEEEeC
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS--------------------WQK-CVSVMKAALDS-GLSVVVDN 330 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~--------------------~~~-~~~~~~~~l~~-g~~vIiD~ 330 (369)
.+++++|++||||||+++.++..++..+++.|.+.. |.. ....+...+.. ...+|+ +
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv-~ 82 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNETGFIV-C 82 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCCCEEEE-E
Confidence 578999999999999999999999889999998521 111 11222222232 234444 8
Q ss_pred CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 331 TNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 331 tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
+++.+..|+ ++++++.++.++||++|.+++.+|-
T Consensus 83 s~~~~~~R~----~~r~~~~~~~~v~l~a~~~~l~~Rl 116 (176)
T PRK09825 83 SSLKKQYRD----ILRKSSPNVHFLWLDGDYETILARM 116 (176)
T ss_pred EecCHHHHH----HHHhhCCCEEEEEEeCCHHHHHHHH
Confidence 887665554 5577888999999999999999884
No 134
>KOG3040|consensus
Probab=98.90 E-value=1e-08 Score=90.92 Aligned_cols=47 Identities=21% Similarity=0.151 Sum_probs=43.0
Q ss_pred CCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598 119 RKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE 184 (369)
Q Consensus 119 rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe 184 (369)
.||+|-.|+.+++-. ++++++++||||... .|+.+|+.+||+.+.+.
T Consensus 180 GKP~~~fFe~al~~~----gv~p~~aVMIGDD~~---------------dDvgGAq~~GMrgilVk 226 (262)
T KOG3040|consen 180 GKPSPFFFESALQAL----GVDPEEAVMIGDDLN---------------DDVGGAQACGMRGILVK 226 (262)
T ss_pred cCCCHHHHHHHHHhc----CCChHHheEEccccc---------------cchhhHhhhcceeEEee
Confidence 799999999999874 799999999999995 89999999999997764
No 135
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.90 E-value=2.1e-09 Score=98.11 Aligned_cols=95 Identities=13% Similarity=0.115 Sum_probs=69.0
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--e---EEEEecCCCCCCCCchhHH---
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--V---QMFVATQYDRYRKPVPGMW--- 126 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~---~~~~~~~~~~~rKP~~gm~--- 126 (369)
++||+.+.|+.|+++|++++|+|+. ....++.+++.++.. + +..+..+....+||.|..+
T Consensus 71 l~pg~~e~l~~l~~~g~~~~IvS~~------------~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~ 138 (214)
T TIGR03333 71 IREGFREFVAFINEHGIPFYVISGG------------MDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQ 138 (214)
T ss_pred ccccHHHHHHHHHHCCCeEEEECCC------------cHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccc
Confidence 6899999999999999999999993 234556666666432 2 1222333335578877765
Q ss_pred -------HHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598 127 -------EYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 127 -------~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~ 181 (369)
..+++++ ...+++++||||+. +|+.+|.++|+-|.
T Consensus 139 ~~cg~~K~~~l~~~----~~~~~~~i~iGDg~----------------~D~~~a~~Ad~~~a 180 (214)
T TIGR03333 139 NQCGCCKPSLIRKL----SEPNDYHIVIGDSV----------------TDVEAAKQSDLCFA 180 (214)
T ss_pred cCCCCCHHHHHHHH----hhcCCcEEEEeCCH----------------HHHHHHHhCCeeEe
Confidence 3556654 34678899999999 89999999999665
No 136
>PRK14530 adenylate kinase; Provisional
Probab=98.89 E-value=1.2e-08 Score=93.24 Aligned_cols=91 Identities=14% Similarity=0.234 Sum_probs=64.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-h------------HH---------------HHHHHHHHHHhCCC
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-S------------WQ---------------KCVSVMKAALDSGL 324 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-~------------~~---------------~~~~~~~~~l~~g~ 324 (369)
..|+|+|+|||||||+++.|++.+++.+|+.+++- . +. .....+...+....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~~~ 83 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSDAD 83 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Confidence 36899999999999999999999999999876541 0 10 11222334445566
Q ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 325 SVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 325 ~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
.+|+|+...+......+..+. . .-.+|++++|.+++.+|
T Consensus 84 ~~IldG~pr~~~q~~~l~~~~---~-~d~vI~Ld~~~~~l~~R 122 (215)
T PRK14530 84 GFVLDGYPRNLEQAEYLESIT---D-LDVVLYLDVSEEELVDR 122 (215)
T ss_pred CEEEcCCCCCHHHHHHHHHhc---C-CCEEEEEeCCHHHHHHH
Confidence 899998666665655554331 2 34589999999999887
No 137
>PLN02674 adenylate kinase
Probab=98.88 E-value=1.5e-08 Score=94.21 Aligned_cols=96 Identities=16% Similarity=0.240 Sum_probs=73.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH-----------------------HHHHHHHHHHHh---CCC
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW-----------------------QKCVSVMKAALD---SGL 324 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~-----------------------~~~~~~~~~~l~---~g~ 324 (369)
+.-|++.|+|||||||+|+.|++.+++.||+.+++ +.. +.....+.+.+. .+.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~ 110 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQK 110 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcCC
Confidence 35688999999999999999999999999998776 210 111233344443 245
Q ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCeE-EEEEEeCCHHHHHHH
Q psy4598 325 SVVVDNTNPDKESRHRYIEAAKQHGVRC-IAVHMNISKEHAKHN 367 (369)
Q Consensus 325 ~vIiD~tn~~~~~r~~~~~la~~~~~~v-~~v~l~~~~e~~~~R 367 (369)
.+|+|+.-.+..+...+.++....+..+ .++++++|.+++.+|
T Consensus 111 g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~R 154 (244)
T PLN02674 111 GFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEER 154 (244)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 7999999888888888877766666544 588999999999988
No 138
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.87 E-value=1.7e-08 Score=86.65 Aligned_cols=87 Identities=20% Similarity=0.238 Sum_probs=57.8
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHHHHHHHhCCCcEEEeCCC---C
Q psy4598 275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSVMKAALDSGLSVVVDNTN---P 333 (369)
Q Consensus 275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~~~~~l~~g~~vIiD~tn---~ 333 (369)
|+|+|+|||||||+|+.|++.+++.+++.|.+.. |......+...+.....+||++.. .
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~~i~ 81 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGAVL 81 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCCccC
Confidence 7899999999999999999999999999998621 122222233333344456666543 2
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 334 DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 334 ~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
+... +...... ..+||+++|.+++.+|-
T Consensus 82 ~~~~----~~~~~~~---~~~i~l~~~~e~~~~R~ 109 (154)
T cd00464 82 REEN----RRLLLEN---GIVVWLDASPEELLERL 109 (154)
T ss_pred cHHH----HHHHHcC---CeEEEEeCCHHHHHHHh
Confidence 3322 2222333 36899999999988774
No 139
>PRK01184 hypothetical protein; Provisional
Probab=98.85 E-value=1.8e-08 Score=89.54 Aligned_cols=90 Identities=13% Similarity=0.175 Sum_probs=62.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc-chhH-------------H--------H-----HHHHHHHHHh--CC
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT-LGSW-------------Q--------K-----CVSVMKAALD--SG 323 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~-~~~~-------------~--------~-----~~~~~~~~l~--~g 323 (369)
.+|+|+|+|||||||+++ +++.+++.+++.++ ++.. . . ....+...+. .+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREKGD 80 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhcCC
Confidence 589999999999999987 77888999999744 4321 0 0 0012222233 25
Q ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 324 LSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 324 ~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
..||+|.+ ....+...+.+.+ +..+.++++++|.++..+|
T Consensus 81 ~~vvidg~-r~~~e~~~~~~~~---~~~~~~i~v~~~~~~~~~R 120 (184)
T PRK01184 81 EVVVIDGV-RGDAEVEYFRKEF---PEDFILIAIHAPPEVRFER 120 (184)
T ss_pred CcEEEeCC-CCHHHHHHHHHhC---CcccEEEEEECCHHHHHHH
Confidence 68899987 4666666665543 3456789999999998887
No 140
>PRK13946 shikimate kinase; Provisional
Probab=98.85 E-value=2e-08 Score=89.67 Aligned_cols=91 Identities=19% Similarity=0.264 Sum_probs=62.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHH-HHHHHHHHhCCCcEEEeC-
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKC-VSVMKAALDSGLSVVVDN- 330 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~-~~~~~~~l~~g~~vIiD~- 330 (369)
+++.|+|+|+|||||||+++.|++.+++.+++.|.+.. ++.. .+.....+..+..||...
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi~~gg 88 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVLATGG 88 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEEECCC
Confidence 34689999999999999999999999999999997521 1122 222333444554444432
Q ss_pred -CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 331 -TNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 331 -tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
+...+..|..+. +.+ ..||+++|.+++.+|.
T Consensus 89 g~~~~~~~r~~l~----~~~---~~v~L~a~~e~~~~Rl 120 (184)
T PRK13946 89 GAFMNEETRAAIA----EKG---ISVWLKADLDVLWERV 120 (184)
T ss_pred CCcCCHHHHHHHH----cCC---EEEEEECCHHHHHHHh
Confidence 345555555553 233 4699999999998875
No 141
>PRK13947 shikimate kinase; Provisional
Probab=98.85 E-value=1.8e-08 Score=88.39 Aligned_cols=87 Identities=14% Similarity=0.265 Sum_probs=59.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHHHHHHHhCCCcEEEeCCC---
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSVMKAALDSGLSVVVDNTN--- 332 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~~~~~l~~g~~vIiD~tn--- 332 (369)
-|+|+|+|||||||+|+.|++.+++.+++.|.+.. |+.+...+.+.+.....+|+....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g~v 82 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGGVV 82 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCCCc
Confidence 48999999999999999999999999999998621 233333344444444455655432
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 333 PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 333 ~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
..... +...++.+ .+||+++|.+.+.+|
T Consensus 83 l~~~~----~~~l~~~~---~vv~L~~~~~~l~~R 110 (171)
T PRK13947 83 LNPEN----VVQLRKNG---VVICLKARPEVILRR 110 (171)
T ss_pred CCHHH----HHHHHhCC---EEEEEECCHHHHHHH
Confidence 23333 23334454 489999999998887
No 142
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.84 E-value=3e-08 Score=89.52 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=62.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcE-EEeCCcchh------------------------------------------
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYT-TVNRDTLGS------------------------------------------ 308 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~-~i~~D~~~~------------------------------------------ 308 (369)
+.+|+++|+|||||||+|+.|++.+++. ++..|.++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~v 82 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARAI 82 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHHH
Confidence 5799999999999999999999998765 456665531
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeC-CHHHHHHH
Q psy4598 309 WQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNI-SKEHAKHN 367 (369)
Q Consensus 309 ~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~-~~e~~~~R 367 (369)
+..+...+..++..|.++|+|+++..+..+.. +...+. .++++.+ +.++..+|
T Consensus 83 ~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~----~~~~~v--~~i~l~v~d~e~lr~R 136 (197)
T PRK12339 83 MPGINRVIRRALLNGEDLVIESLYFHPPMIDE----NRTNNI--RAFYLYIRDAELHRSR 136 (197)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCcCHHHHHH----HHhcCe--EEEEEEeCCHHHHHHH
Confidence 11123446778899999999999988877632 333343 3444443 45554444
No 143
>KOG2914|consensus
Probab=98.83 E-value=2.4e-08 Score=91.31 Aligned_cols=101 Identities=14% Similarity=0.160 Sum_probs=74.3
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhc
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKN 134 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~ 134 (369)
+.||+.+.++.|+..|.++.++||-+. .+.+.-..+.+.++..++. .++.........||.|++|..+++.+
T Consensus 93 ~~PGa~kLv~~L~~~gip~alat~s~~-----~~~~~k~~~~~~~~~~f~~--~v~~d~~~v~~gKP~Pdi~l~A~~~l- 164 (222)
T KOG2914|consen 93 LMPGAEKLVNHLKNNGIPVALATSSTS-----ASFELKISRHEDIFKNFSH--VVLGDDPEVKNGKPDPDIYLKAAKRL- 164 (222)
T ss_pred cCCcHHHHHHHHHhCCCCeeEEecCCc-----ccHHHHHHHhhHHHHhcCC--CeecCCccccCCCCCchHHHHHHHhc-
Confidence 579999999999999999999999421 1112112233334444332 22222345667799999999999986
Q ss_pred CCccccC-CccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598 135 GDLAIDI-SQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT 182 (369)
Q Consensus 135 ~~~~i~~-~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~ 182 (369)
+..+ +.|+++.|+. .-+++|+++|++.+-
T Consensus 165 ---~~~~~~k~lVfeds~----------------~Gv~aa~aagm~vi~ 194 (222)
T KOG2914|consen 165 ---GVPPPSKCLVFEDSP----------------VGVQAAKAAGMQVVG 194 (222)
T ss_pred ---CCCCccceEEECCCH----------------HHHHHHHhcCCeEEE
Confidence 4566 9999999999 799999999999864
No 144
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.83 E-value=3.3e-08 Score=87.33 Aligned_cols=89 Identities=18% Similarity=0.285 Sum_probs=62.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHHHHHHHhCCCcEEEeCCCC-
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSVMKAALDSGLSVVVDNTNP- 333 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~~~~~l~~g~~vIiD~tn~- 333 (369)
..|+|+|++||||||+++.|++.+++.+++.|.... |+.....+.+.+.....+|+.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~ggg~ 84 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATGGGS 84 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCch
Confidence 469999999999999999999999999999996421 2222233333344445667765432
Q ss_pred --CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 334 --DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 334 --~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
.+..+.. .++++ .+||+++|.+++.+|.
T Consensus 85 v~~~~~~~~----l~~~~---~vv~L~~~~e~~~~Ri 114 (172)
T PRK05057 85 VKSRETRNR----LSARG---VVVYLETTIEKQLART 114 (172)
T ss_pred hCCHHHHHH----HHhCC---EEEEEeCCHHHHHHHH
Confidence 3344433 33444 5899999999999986
No 145
>PRK08238 hypothetical protein; Validated
Probab=98.83 E-value=1.4e-08 Score=103.27 Aligned_cols=124 Identities=21% Similarity=0.138 Sum_probs=91.4
Q ss_pred CCceEEEEecCCceeecCCCCC----------------------------------CCCCccccccccccHHHHHHHHHH
Q psy4598 23 NSAKIASFDLDGTLITTKSGKV----------------------------------FPVDTHDWKLLFSNIESVLKQYLD 68 (369)
Q Consensus 23 ~~~k~~~fDlDgTLi~~~sg~~----------------------------------~~~~~~d~~~~~p~v~~~L~~L~~ 68 (369)
.+.+.++||+||||+.+++-.. -..++.... ++|++.+.|+++++
T Consensus 8 ~~~~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp-~~pga~e~L~~lk~ 86 (479)
T PRK08238 8 SRDLPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLP-YNEEVLDYLRAERA 86 (479)
T ss_pred CCCCCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCC-CChhHHHHHHHHHH
Confidence 3456899999999999876222 000112222 57999999999999
Q ss_pred CCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEee
Q psy4598 69 DGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAG 148 (369)
Q Consensus 69 ~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VG 148 (369)
+|++++|+||.. +..++.+++.+|+ |+.+++++.....||.+.. +.+.+.+ ..+++.|+|
T Consensus 87 ~G~~v~LaTas~------------~~~a~~i~~~lGl-Fd~Vigsd~~~~~kg~~K~-~~l~~~l------~~~~~~yvG 146 (479)
T PRK08238 87 AGRKLVLATASD------------ERLAQAVAAHLGL-FDGVFASDGTTNLKGAAKA-AALVEAF------GERGFDYAG 146 (479)
T ss_pred CCCEEEEEeCCC------------HHHHHHHHHHcCC-CCEEEeCCCccccCCchHH-HHHHHHh------CccCeeEec
Confidence 999999999942 3456677888888 8889998877777776653 3344443 245689999
Q ss_pred CccccccccCCCCCCCCCcccHHHHHhCCCCc-cCc
Q psy4598 149 DAAGRAANWAPKKKKDFACTDHLFAFNLNLAF-FTP 183 (369)
Q Consensus 149 D~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f-~~p 183 (369)
|+. +|+..+..+|-.+ ++|
T Consensus 147 DS~----------------~Dlp~~~~A~~av~Vn~ 166 (479)
T PRK08238 147 NSA----------------ADLPVWAAARRAIVVGA 166 (479)
T ss_pred CCH----------------HHHHHHHhCCCeEEECC
Confidence 999 8999999999776 465
No 146
>PRK13949 shikimate kinase; Provisional
Probab=98.83 E-value=2.7e-08 Score=87.70 Aligned_cols=91 Identities=15% Similarity=0.194 Sum_probs=59.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------------hHHHHHHHHHHHHhCCCcEEEeCCCCCH
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------------SWQKCVSVMKAALDSGLSVVVDNTNPDK 335 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~~~~~~~~~~~l~~g~~vIiD~tn~~~ 335 (369)
-|+|+|+|||||||+++.|++.+++.+++.|.+- .++.+...+.+.+.....+||.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg~~ 82 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGGAP 82 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCccc
Confidence 4899999999999999999999999999999762 1222333333334433456665433222
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 336 ESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 336 ~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
..... .++.++++ .+||+++|.+.+.+|-
T Consensus 83 ~~~~~-~~~l~~~~---~vi~L~~~~~~~~~Ri 111 (169)
T PRK13949 83 CFFDN-MELMNASG---TTVYLKVSPEVLFVRL 111 (169)
T ss_pred CCHHH-HHHHHhCC---eEEEEECCHHHHHHHH
Confidence 11111 12234445 4689999999998873
No 147
>PRK14528 adenylate kinase; Provisional
Probab=98.82 E-value=3.5e-08 Score=88.25 Aligned_cols=95 Identities=13% Similarity=0.218 Sum_probs=68.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-h-----------HHH------------HHHHHHHHHh---CCCc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-S-----------WQK------------CVSVMKAALD---SGLS 325 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-~-----------~~~------------~~~~~~~~l~---~g~~ 325 (369)
+.|++.|+|||||||+++.|++.+++.+++.+++- . ... ....+.+.+. ....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g 81 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 34789999999999999999999999999998862 1 000 1112233332 2346
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHH
Q psy4598 326 VVVDNTNPDKESRHRYIEAAKQHGV-RCIAVHMNISKEHAKHN 367 (369)
Q Consensus 326 vIiD~tn~~~~~r~~~~~la~~~~~-~v~~v~l~~~~e~~~~R 367 (369)
+|+|+.-.+..+-..+.++....+. .-.++++++|.+++.+|
T Consensus 82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~R 124 (186)
T PRK14528 82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKR 124 (186)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 9999976677776667666655443 44689999999999887
No 148
>PRK02496 adk adenylate kinase; Provisional
Probab=98.82 E-value=3.2e-08 Score=88.05 Aligned_cols=95 Identities=14% Similarity=0.215 Sum_probs=68.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH-----------------------HHHHHHHHHHHh---CCCcE
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW-----------------------QKCVSVMKAALD---SGLSV 326 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~-----------------------~~~~~~~~~~l~---~g~~v 326 (369)
-|+|.|+|||||||+++.|++.+++.+++.+++ +.. +.....+...+. ....+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g~ 82 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANGW 82 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCCE
Confidence 378899999999999999999999999998654 210 011222333332 23469
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHHc
Q psy4598 327 VVDNTNPDKESRHRYIEAAKQHGV-RCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 327 IiD~tn~~~~~r~~~~~la~~~~~-~v~~v~l~~~~e~~~~Rn 368 (369)
|+|+...+..+...+..++...+. +..++++++|.+++.+|-
T Consensus 83 vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl 125 (184)
T PRK02496 83 ILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERL 125 (184)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHH
Confidence 999988777776666666665543 557899999999999883
No 149
>KOG3109|consensus
Probab=98.81 E-value=1.6e-08 Score=90.48 Aligned_cols=92 Identities=18% Similarity=0.248 Sum_probs=74.6
Q ss_pred ccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCC------CCCCCCchhHHHH
Q psy4598 57 SNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQY------DRYRKPVPGMWEY 128 (369)
Q Consensus 57 p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~------~~~rKP~~gm~~~ 128 (369)
|-..+.|-.|+..+ .++|||. -+.....+++.|||. |+.++|.+. ....||.+.+|+.
T Consensus 103 ~~LRnlLL~l~~r~--k~~FTNa------------~k~HA~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~ 168 (244)
T KOG3109|consen 103 PVLRNLLLSLKKRR--KWIFTNA------------YKVHAIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEK 168 (244)
T ss_pred HHHHHHHHhCcccc--EEEecCC------------cHHHHHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHH
Confidence 34577777777664 8999993 345667789999995 887777753 3468999999999
Q ss_pred HHHHhcCCcccc-CCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598 129 LSQEKNGDLAID-ISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT 182 (369)
Q Consensus 129 ~~~~~~~~~~i~-~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~ 182 (369)
+.+.. +++ |.+++|+.|+. .-|+.|+..|++++.
T Consensus 169 a~k~a----gi~~p~~t~FfDDS~----------------~NI~~ak~vGl~tvl 203 (244)
T KOG3109|consen 169 AMKVA----GIDSPRNTYFFDDSE----------------RNIQTAKEVGLKTVL 203 (244)
T ss_pred HHHHh----CCCCcCceEEEcCch----------------hhHHHHHhccceeEE
Confidence 99986 677 99999999999 799999999999843
No 150
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.80 E-value=4.3e-08 Score=87.06 Aligned_cols=94 Identities=16% Similarity=0.305 Sum_probs=67.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh--------------H---------HHHHHHHHHHHhC---CCcE
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS--------------W---------QKCVSVMKAALDS---GLSV 326 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~--------------~---------~~~~~~~~~~l~~---g~~v 326 (369)
-|++.|+|||||||+|+.|++.++.+||+.+++ +. + .-......+.++. ...+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~~ 81 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAGF 81 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCeE
Confidence 378999999999999999999999999998776 10 0 0011222222222 2269
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHH
Q psy4598 327 VVDNTNPDKESRHRYIEAAKQHGV-RCIAVHMNISKEHAKHN 367 (369)
Q Consensus 327 IiD~tn~~~~~r~~~~~la~~~~~-~v~~v~l~~~~e~~~~R 367 (369)
|+|+...+...-..+.....++|. .-.++.++++.+....|
T Consensus 82 I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r 123 (178)
T COG0563 82 ILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLER 123 (178)
T ss_pred EEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHH
Confidence 999988777777777777777764 34688889999888776
No 151
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=98.80 E-value=1.9e-08 Score=97.63 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=39.0
Q ss_pred EEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHC----CcEEEEEecCCCcC
Q psy4598 27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDD----GYKLVIFTNQGAIG 83 (369)
Q Consensus 27 ~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~----G~~i~i~TNq~gi~ 83 (369)
.++||+||||+.... ++|++.++|+.|+.. |++++++||.+|..
T Consensus 2 ~~ifD~DGvL~~g~~-------------~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s 49 (321)
T TIGR01456 2 GFAFDIDGVLFRGKK-------------PIAGASDALRRLNRNQGQLKIPYIFLTNGGGFS 49 (321)
T ss_pred EEEEeCcCceECCcc-------------ccHHHHHHHHHHhccccccCCCEEEEecCCCCC
Confidence 478999999997642 699999999999998 99999999988765
No 152
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=98.79 E-value=4.9e-09 Score=79.65 Aligned_cols=48 Identities=27% Similarity=0.263 Sum_probs=43.2
Q ss_pred CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598 118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE 184 (369)
Q Consensus 118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe 184 (369)
++||+|+|++.+++++ ++++++++||||+.- +|+.+|+++|+.++...
T Consensus 2 ~gKP~p~~~~~a~~~~----~~~~~~~~~VGD~~~---------------~Di~~a~~~G~~~ilV~ 49 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRL----GVDPSRCVMVGDSLE---------------TDIEAAKAAGIDTILVL 49 (75)
T ss_dssp CSTTSHHHHHHHHHHH----TSGGGGEEEEESSTT---------------THHHHHHHTTSEEEEES
T ss_pred CCCCcHHHHHHHHHHc----CCCHHHEEEEcCCcH---------------hHHHHHHHcCCcEEEEC
Confidence 7999999999999996 789999999999932 89999999999997553
No 153
>PRK13808 adenylate kinase; Provisional
Probab=98.79 E-value=3.9e-08 Score=95.12 Aligned_cols=93 Identities=11% Similarity=0.217 Sum_probs=69.0
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh--------------H---------HHHHHHHHHHHh---CCCcEE
Q psy4598 275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS--------------W---------QKCVSVMKAALD---SGLSVV 327 (369)
Q Consensus 275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~--------------~---------~~~~~~~~~~l~---~g~~vI 327 (369)
|+|.|+|||||||+++.|++.+++.+|+.+++ +. + +.....+.+.+. ....+|
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~I 82 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGFI 82 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCEE
Confidence 78899999999999999999999999998665 21 0 111222333332 235799
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHH
Q psy4598 328 VDNTNPDKESRHRYIEAAKQHGV-RCIAVHMNISKEHAKHN 367 (369)
Q Consensus 328 iD~tn~~~~~r~~~~~la~~~~~-~v~~v~l~~~~e~~~~R 367 (369)
||+...+.++...|..+....++ +-.+|+|++|.+++++|
T Consensus 83 LDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~R 123 (333)
T PRK13808 83 LDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLAR 123 (333)
T ss_pred EeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHH
Confidence 99977777777777666666665 34688999999999988
No 154
>PTZ00445 p36-lilke protein; Provisional
Probab=98.79 E-value=3.1e-08 Score=88.95 Aligned_cols=138 Identities=14% Similarity=0.151 Sum_probs=98.9
Q ss_pred CCceEEEEecCCceeecCCCCCCCCCccccc---cccccHHHHHHHHHHCCcEEEEEecCCCcC--CC----CCCHHHHH
Q psy4598 23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWK---LLFSNIESVLKQYLDDGYKLVIFTNQGAIG--RK----KMSTRDFQ 93 (369)
Q Consensus 23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~---~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~--~~----~~~~~~~~ 93 (369)
...|++++|+|.|||.--||.......++-. -.-|.....+.+|++.|++|+|||=.+... .. +++. .
T Consensus 41 ~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg---~ 117 (219)
T PTZ00445 41 CGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISG---D 117 (219)
T ss_pred cCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceech---H
Confidence 4579999999999998777663333212221 145778889999999999999999654322 11 1111 1
Q ss_pred HHHHHHHHHcCCCe--EEEE--ecC---------CCCCCCCchhH--H--HHHHHHhcCCccccCCccEEeeCccccccc
Q psy4598 94 AKAEKIIKSLNVPV--QMFV--ATQ---------YDRYRKPVPGM--W--EYLSQEKNGDLAIDISQSFYAGDAAGRAAN 156 (369)
Q Consensus 94 ~~i~~~l~~l~i~~--~~~~--~~~---------~~~~rKP~~gm--~--~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~ 156 (369)
+.++..++.-+..+ +-++ .+. .....||+|++ | +.+++++ +++|++++||-|..
T Consensus 118 ~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~----gl~peE~LFIDD~~----- 188 (219)
T PTZ00445 118 RMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDF----NVNPDEILFIDDDM----- 188 (219)
T ss_pred HHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHc----CCCHHHeEeecCCH-----
Confidence 35667777666544 3223 232 13668999999 9 9999996 79999999999999
Q ss_pred cCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598 157 WAPKKKKDFACTDHLFAFNLNLAFFTP 183 (369)
Q Consensus 157 ~~~~~~~d~s~~D~~~A~n~Gi~f~~p 183 (369)
.-+++|.+.|+..+..
T Consensus 189 -----------~NVeaA~~lGi~ai~f 204 (219)
T PTZ00445 189 -----------NNCKNALKEGYIALHV 204 (219)
T ss_pred -----------HHHHHHHHCCCEEEEc
Confidence 7999999999998654
No 155
>PRK00625 shikimate kinase; Provisional
Probab=98.79 E-value=2.7e-08 Score=87.98 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=58.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch----------h------------HHHHHHHHHHHHhCCCcEEEeCC
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG----------S------------WQKCVSVMKAALDSGLSVVVDNT 331 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~----------~------------~~~~~~~~~~~l~~g~~vIiD~t 331 (369)
.|+|+|+|||||||+++.|++.+++.+++.|.+- . |+.....+...+... .+||...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~~-~~VIs~G 80 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPVI-PSIVALG 80 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhccC-CeEEECC
Confidence 4899999999999999999999999999999752 1 222333333444433 4454443
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 332 NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 332 n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
....... ...+..+..+ .+||+++|.+++.+|.
T Consensus 81 Gg~~~~~-e~~~~l~~~~---~Vv~L~~~~e~l~~Rl 113 (173)
T PRK00625 81 GGTLMIE-PSYAHIRNRG---LLVLLSLPIATIYQRL 113 (173)
T ss_pred CCccCCH-HHHHHHhcCC---EEEEEECCHHHHHHHH
Confidence 3222222 2222233333 4899999999998884
No 156
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.78 E-value=6.1e-08 Score=89.53 Aligned_cols=91 Identities=12% Similarity=0.173 Sum_probs=65.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhH------------------------HHHHHHHHHHHh-----CC
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSW------------------------QKCVSVMKAALD-----SG 323 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~------------------------~~~~~~~~~~l~-----~g 323 (369)
.-|+|.|+|||||||+|+.|++.+++.+|+.|++-.. +...+.+.+.+. ..
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~~ 86 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDDCF 86 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccccC
Confidence 3489999999999999999999999999999887210 111222233332 24
Q ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 324 LSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 324 ~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
..+|+|+...+..++..+.+. .-...++++++|.+++.+|
T Consensus 87 ~g~iLDGfPRt~~Qa~~l~~~----~~~~~vi~l~~~~~~~~~R 126 (229)
T PTZ00088 87 KGFILDGFPRNLKQCKELGKI----TNIDLFVNIYLPRNILIKK 126 (229)
T ss_pred ceEEEecCCCCHHHHHHHHhc----CCCCEEEEEeCCHHHHHHH
Confidence 579999977677666665432 3345689999999998877
No 157
>KOG3062|consensus
Probab=98.78 E-value=1.1e-08 Score=92.16 Aligned_cols=97 Identities=25% Similarity=0.229 Sum_probs=78.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC-----C-cEEEeCCc-ch---------------hHHHHHHHHHHHHhCCCcEEEe
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL-----N-YTTVNRDT-LG---------------SWQKCVSVMKAALDSGLSVVVD 329 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~-----~-~~~i~~D~-~~---------------~~~~~~~~~~~~l~~g~~vIiD 329 (369)
+.+|++||.|.|||||.|+.|.+.+ . .+.|..|+ +. ....+...+...++++..||+|
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk~~iVI~D 80 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEKALRGKLRSAVDRSLSKGDIVIVD 80 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCCCCcccccccHHHHHHHHHHHHHHHhhcccCcEEEEe
Confidence 3589999999999999999998754 2 44444443 21 1234556677778899999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 330 NTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 330 ~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
+-|.-+..|-++-..++..+....+|+..+|.|+|++-|
T Consensus 81 slNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~N 119 (281)
T KOG3062|consen 81 SLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWN 119 (281)
T ss_pred cccccccceeeeeeehhccceeEEEEEecCCHHHHHHhc
Confidence 999999999999999999999999999999999998865
No 158
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.78 E-value=4.1e-08 Score=86.18 Aligned_cols=88 Identities=19% Similarity=0.306 Sum_probs=60.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHHHHHHHhCCCcEEEeCCC-
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSVMKAALDSGLSVVVDNTN- 332 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~~~~~l~~g~~vIiD~tn- 332 (369)
++.|+|+|+|||||||+++.|++.+++.+++.|.+.. |+.....+...+..+ .+||.+..
T Consensus 2 ~~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~~~-~~vi~~ggg 80 (171)
T PRK03731 2 TQPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVTAP-STVIATGGG 80 (171)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhcCC-CeEEECCCC
Confidence 3568899999999999999999999999999998631 222223333444443 45565443
Q ss_pred --CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 333 --PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 333 --~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
.....+ .+.++.+ .+||+++|.+++.+|
T Consensus 81 ~vl~~~~~----~~l~~~~---~~v~l~~~~~~~~~R 110 (171)
T PRK03731 81 IILTEENR----HFMRNNG---IVIYLCAPVSVLANR 110 (171)
T ss_pred ccCCHHHH----HHHHhCC---EEEEEECCHHHHHHH
Confidence 233333 3334445 488999999998877
No 159
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.77 E-value=4.7e-08 Score=84.21 Aligned_cols=92 Identities=15% Similarity=0.277 Sum_probs=65.5
Q ss_pred EEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-----------------------HHHHHHHHHHHHh---CCCcEEEe
Q psy4598 277 MIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-----------------------WQKCVSVMKAALD---SGLSVVVD 329 (369)
Q Consensus 277 l~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-----------------------~~~~~~~~~~~l~---~g~~vIiD 329 (369)
+.|+|||||||+|+.|++.+++.+|+..++ +. -+...+.+...+. ....+|+|
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild 80 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD 80 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence 579999999999999999999999998664 21 0112233333443 35689999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeE-EEEEEeCCHHHHHHHc
Q psy4598 330 NTNPDKESRHRYIEAAKQHGVRC-IAVHMNISKEHAKHNI 368 (369)
Q Consensus 330 ~tn~~~~~r~~~~~la~~~~~~v-~~v~l~~~~e~~~~Rn 368 (369)
+.-.+..+...+.+.....+..+ .++++++|.+.+.+|-
T Consensus 81 GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~ 120 (151)
T PF00406_consen 81 GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERL 120 (151)
T ss_dssp SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHH
T ss_pred eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhc
Confidence 99888777777766554455554 8999999999999883
No 160
>PRK06547 hypothetical protein; Provisional
Probab=98.77 E-value=4.4e-08 Score=86.59 Aligned_cols=97 Identities=13% Similarity=0.232 Sum_probs=67.1
Q ss_pred cccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh-H-------HHHHHHHHH--------------------H
Q psy4598 268 KAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS-W-------QKCVSVMKA--------------------A 319 (369)
Q Consensus 268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~-~-------~~~~~~~~~--------------------~ 319 (369)
....+.+|++.|+|||||||+++.|++.+++.+++.|.+.. + +.+...... .
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~~ 90 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWVS 90 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcEE
Confidence 35567899999999999999999999999999999998631 1 111111110 0
Q ss_pred HhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 320 LDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 320 l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
+..+..||+++...- +..+..++.+ +..+..||+++|.+++.+|-
T Consensus 91 l~~~~vVIvEG~~al---~~~~r~~~d~-~g~v~~I~ld~~~~vr~~R~ 135 (172)
T PRK06547 91 VEPGRRLIIEGVGSL---TAANVALASL-LGEVLTVWLDGPEALRKERA 135 (172)
T ss_pred eCCCCeEEEEehhhc---cHHHHHHhcc-CCCEEEEEEECCHHHHHHHH
Confidence 112346778887643 2345555554 44578999999999999873
No 161
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.77 E-value=7e-08 Score=92.00 Aligned_cols=97 Identities=19% Similarity=0.230 Sum_probs=68.7
Q ss_pred cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhHHHHHHHHHHH-HhCCCcEEEeCCCCCH-HHHHHHHHHHHh
Q psy4598 270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAA-LDSGLSVVVDNTNPDK-ESRHRYIEAAKQ 347 (369)
Q Consensus 270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~~~~~~~~~~~-l~~g~~vIiD~tn~~~-~~r~~~~~la~~ 347 (369)
.++.+|+++|++||||||+++.|. ..++..++.-....+..+.+.+... ......|++|..+..- ......+...++
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~~~~L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~~~~~L~~ 82 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALE-DLGYYCVDNLPPSLLPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPEALDELRE 82 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHH-HcCCeEECCcCHHHHHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHHHHHHHHH
Confidence 345799999999999999999997 4577777665555455555554432 2234578899886532 223344444455
Q ss_pred cCCeEEEEEEeCCHHHHHHH
Q psy4598 348 HGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 348 ~~~~v~~v~l~~~~e~~~~R 367 (369)
.+..+.+||++++.+++.+|
T Consensus 83 ~g~~~~iI~L~a~~e~L~~R 102 (288)
T PRK05416 83 RGIDVRVLFLDASDEVLIRR 102 (288)
T ss_pred cCCcEEEEEEECCHHHHHHH
Confidence 68899999999999999988
No 162
>PRK03839 putative kinase; Provisional
Probab=98.76 E-value=2.7e-08 Score=88.17 Aligned_cols=80 Identities=16% Similarity=0.284 Sum_probs=57.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh---------------HHHHHHHHHHHHhCCCcEEEeCCCCCHHHH
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS---------------WQKCVSVMKAALDSGLSVVVDNTNPDKESR 338 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~---------------~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r 338 (369)
.|+|+|+|||||||+++.|++.+++.+++.|.+-. ++.+...+.+.+ .+..+|+|+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~vIidG~~~----- 75 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGEEKDDEMEIDFDKLAYFIEEEF-KEKNVVLDGHLS----- 75 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCCcccCChhhhcCHHHHHHHHHHhc-cCCCEEEEeccc-----
Confidence 58999999999999999999999999999987621 222333333322 356799998542
Q ss_pred HHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 339 HRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 339 ~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
.+ . ... .+++++++.+++.+|
T Consensus 76 -~l----~--~~~-~vi~L~~~~~~~~~R 96 (180)
T PRK03839 76 -HL----L--PVD-YVIVLRAHPKIIKER 96 (180)
T ss_pred -cc----c--CCC-EEEEEECCHHHHHHH
Confidence 11 1 222 368899999999887
No 163
>KOG3079|consensus
Probab=98.73 E-value=7.2e-08 Score=84.53 Aligned_cols=98 Identities=13% Similarity=0.247 Sum_probs=73.6
Q ss_pred cccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh------------------------HHHHHHHHHHHHhC
Q psy4598 268 KAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS------------------------WQKCVSVMKAALDS 322 (369)
Q Consensus 268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~------------------------~~~~~~~~~~~l~~ 322 (369)
.+.++.+|++.|.|||||-|.+..+++.+++.|||+.++ |. -+-+.+.+++++.+
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~ 83 (195)
T KOG3079|consen 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS 83 (195)
T ss_pred cccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence 456778999999999999999999999999999998765 21 11233444555533
Q ss_pred C---CcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 323 G---LSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 323 g---~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
. ..++||+.-....+...|-+.... .+-.+++|+|+.|+|.+|
T Consensus 84 ~~~~~~fLIDGyPR~~~q~~~fe~~i~~--~~~fvl~fdc~ee~~l~R 129 (195)
T KOG3079|consen 84 SGDSNGFLIDGYPRNVDQLVEFERKIQG--DPDFVLFFDCPEETMLKR 129 (195)
T ss_pred cCCCCeEEecCCCCChHHHHHHHHHhcC--CCCEEEEEeCCHHHHHHH
Confidence 2 239999998888888777665442 344689999999998877
No 164
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.73 E-value=8.5e-08 Score=85.65 Aligned_cols=91 Identities=16% Similarity=0.281 Sum_probs=62.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-----------------hH-HHH------------------HHH
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-----------------SW-QKC------------------VSV 315 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-----------------~~-~~~------------------~~~ 315 (369)
..+|+|+|++||||||+++.|+...+..++..|..- .+ +.+ ...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~ 81 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIE 81 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHH
Confidence 357899999999999999999988755444444320 00 000 012
Q ss_pred HHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 316 MKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 316 ~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
+.+.++.|..||++++ +..+..+.+..+..+.++++++|.++..+|-
T Consensus 82 ~~~~l~~g~~VI~~G~------~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL 128 (186)
T PRK10078 82 IDLWLHAGFDVLVNGS------RAHLPQARARYQSALLPVCLQVSPEILRQRL 128 (186)
T ss_pred HHHHHhCCCEEEEeCh------HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHH
Confidence 4556778888888655 3333444555667788899999999988873
No 165
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.73 E-value=1.2e-08 Score=89.28 Aligned_cols=118 Identities=16% Similarity=0.174 Sum_probs=84.9
Q ss_pred eEEEEecCCceeecCCCCCCCCCcccc--------------ccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHH
Q psy4598 26 KIASFDLDGTLITTKSGKVFPVDTHDW--------------KLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRD 91 (369)
Q Consensus 26 k~~~fDlDgTLi~~~sg~~~~~~~~d~--------------~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~ 91 (369)
+.+++|||+||+.+.... .....|+ ...=||+.+.|++|.+. |.|+|+|+.+
T Consensus 2 ~~lvlDLDeTLi~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~----------- 67 (162)
T TIGR02251 2 KTLVLDLDETLVHSTFKM--PKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASL----------- 67 (162)
T ss_pred cEEEEcCCCCcCCCCCCC--CCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCc-----------
Confidence 678999999999875432 1111221 23469999999999987 9999999943
Q ss_pred HHHHHHHHHHHcCC---CeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcc
Q psy4598 92 FQAKAEKIIKSLNV---PVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACT 168 (369)
Q Consensus 92 ~~~~i~~~l~~l~i---~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~ 168 (369)
+...+.+++.++. .|...++.+.+...+|. +...++. ++.++++++||||+. .
T Consensus 68 -~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~----l~~~~~~vIiVDD~~----------------~ 123 (162)
T TIGR02251 68 -EEYADPVLDILDRGGKVISRRLYRESCVFTNGK---YVKDLSL----VGKDLSKVIIIDNSP----------------Y 123 (162)
T ss_pred -HHHHHHHHHHHCcCCCEEeEEEEccccEEeCCC---EEeEchh----cCCChhhEEEEeCCh----------------h
Confidence 3345666777764 46666677777666765 3333444 367899999999999 7
Q ss_pred cHHHHHhCCCCcc
Q psy4598 169 DHLFAFNLNLAFF 181 (369)
Q Consensus 169 D~~~A~n~Gi~f~ 181 (369)
|+.++..+||...
T Consensus 124 ~~~~~~~NgI~i~ 136 (162)
T TIGR02251 124 SYSLQPDNAIPIK 136 (162)
T ss_pred hhccCccCEeecC
Confidence 8888988998853
No 166
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=98.71 E-value=5.8e-08 Score=88.14 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=65.0
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eE--EEEec-----CCCCCCCCchhH
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQ--MFVAT-----QYDRYRKPVPGM 125 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~--~~~~~-----~~~~~rKP~~gm 125 (369)
++||+.+.|+.|++.| +++|+|+. +...+..+++.+|++ |. ..+.. +.....||.+..
T Consensus 69 l~pga~ell~~lk~~~-~~~IVS~~------------~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~ 135 (203)
T TIGR02137 69 PLEGAVEFVDWLRERF-QVVILSDT------------FYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQ 135 (203)
T ss_pred CCccHHHHHHHHHhCC-eEEEEeCC------------hHHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHH
Confidence 6899999999999975 99999992 445667788899875 21 11211 111245666666
Q ss_pred HHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598 126 WEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF 180 (369)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f 180 (369)
....+++. + .+++||||+. +|+.++.++|+..
T Consensus 136 ~l~~l~~~----~---~~~v~vGDs~----------------nDl~ml~~Ag~~i 167 (203)
T TIGR02137 136 SVIAFKSL----Y---YRVIAAGDSY----------------NDTTMLSEAHAGI 167 (203)
T ss_pred HHHHHHhh----C---CCEEEEeCCH----------------HHHHHHHhCCCCE
Confidence 55555542 2 3799999999 8999999999997
No 167
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.71 E-value=5.8e-08 Score=91.62 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=66.9
Q ss_pred CCCCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHH
Q psy4598 20 DVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKI 99 (369)
Q Consensus 20 ~~~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~ 99 (369)
..-+..|+++|||||||+.... .-+.-.|++.++|++|+++|++++|+||.+ +..+...
T Consensus 121 ~~~~~~kvIvFDLDgTLi~~~~---------~v~irdPgV~EaL~~LkekGikLaIaTS~~------------Re~v~~~ 179 (301)
T TIGR01684 121 KVFEPPHVVVFDLDSTLITDEE---------PVRIRDPRIYDSLTELKKRGCILVLWSYGD------------RDHVVES 179 (301)
T ss_pred cccccceEEEEecCCCCcCCCC---------ccccCCHHHHHHHHHHHHCCCEEEEEECCC------------HHHHHHH
Confidence 3445679999999999997642 111226999999999999999999999943 3455678
Q ss_pred HHHcCCC--eEEEEecCCCCCCCCchhHH
Q psy4598 100 IKSLNVP--VQMFVATQYDRYRKPVPGMW 126 (369)
Q Consensus 100 l~~l~i~--~~~~~~~~~~~~rKP~~gm~ 126 (369)
++.+|+. |++++|.++...-||.|...
T Consensus 180 L~~lGLd~YFdvIIs~Gdv~~~kp~~e~~ 208 (301)
T TIGR01684 180 MRKVKLDRYFDIIISGGHKAEEYSTMSTE 208 (301)
T ss_pred HHHcCCCcccCEEEECCccccCCCCcccc
Confidence 8999995 78889988888888877443
No 168
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.70 E-value=1e-07 Score=98.74 Aligned_cols=96 Identities=11% Similarity=0.143 Sum_probs=70.6
Q ss_pred ccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------------hHHHHHHHHHHHHhCCCcEEEeC
Q psy4598 269 AALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------------SWQKCVSVMKAALDSGLSVVVDN 330 (369)
Q Consensus 269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~~~~~~~~~~~l~~g~~vIiD~ 330 (369)
|.+.+.|+|+|+|||||||+++.|++.+++.+++.|.+- .|+++...+.+.+......||.+
T Consensus 3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~ 82 (542)
T PRK14021 3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSL 82 (542)
T ss_pred CCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEC
Confidence 445578999999999999999999999999999999861 24455555444333233556654
Q ss_pred CC---CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 331 TN---PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 331 tn---~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
.. ..++.|..+.++.++.+ .+||+++|.+.+.+|
T Consensus 83 GGG~v~~~~n~~~L~~~~~~~g---~vv~L~~~~~~l~~R 119 (542)
T PRK14021 83 GGGAPMTPSTQHALASYIAHGG---RVVYLDADPKEAMER 119 (542)
T ss_pred CCchhCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHH
Confidence 32 35666776666667666 589999999999987
No 169
>PRK14529 adenylate kinase; Provisional
Probab=98.68 E-value=1.2e-07 Score=87.14 Aligned_cols=94 Identities=17% Similarity=0.305 Sum_probs=69.7
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCcEEEeCCc-chh-----------H------------HHHHHHHHHHHhC--CCcEEE
Q psy4598 275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT-LGS-----------W------------QKCVSVMKAALDS--GLSVVV 328 (369)
Q Consensus 275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~-~~~-----------~------------~~~~~~~~~~l~~--g~~vIi 328 (369)
|+|.|+|||||||+++.|++.++..+|+..+ ++. . +.....+.+.+.. ...+|+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~iL 82 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWLL 82 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEEE
Confidence 7889999999999999999999999997543 321 0 1122334444432 457999
Q ss_pred eCCCCCHHHHHHHHHHHHhcCCeE-EEEEEeCCHHHHHHHc
Q psy4598 329 DNTNPDKESRHRYIEAAKQHGVRC-IAVHMNISKEHAKHNI 368 (369)
Q Consensus 329 D~tn~~~~~r~~~~~la~~~~~~v-~~v~l~~~~e~~~~Rn 368 (369)
|+.-.+..+...+.+.....+..+ .++++++|.+++.+|-
T Consensus 83 DGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl 123 (223)
T PRK14529 83 DGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRI 123 (223)
T ss_pred eCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHh
Confidence 999988888888877666655443 5899999999999883
No 170
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.67 E-value=1.6e-07 Score=75.63 Aligned_cols=88 Identities=24% Similarity=0.366 Sum_probs=56.5
Q ss_pred EEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCe
Q psy4598 28 ASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPV 107 (369)
Q Consensus 28 ~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~ 107 (369)
++||+||||+... .++||+.++|+.|+++|++++++||.+.. +.+++ ...|+.+|+++
T Consensus 1 ~l~D~dGvl~~g~-------------~~ipga~e~l~~L~~~g~~~~~lTNns~~-----s~~~~----~~~L~~~Gi~~ 58 (101)
T PF13344_consen 1 FLFDLDGVLYNGN-------------EPIPGAVEALDALRERGKPVVFLTNNSSR-----SREEY----AKKLKKLGIPV 58 (101)
T ss_dssp EEEESTTTSEETT-------------EE-TTHHHHHHHHHHTTSEEEEEES-SSS------HHHH----HHHHHHTTTT-
T ss_pred CEEeCccEeEeCC-------------CcCcCHHHHHHHHHHcCCCEEEEeCCCCC-----CHHHH----HHHHHhcCcCC
Confidence 5899999999743 27999999999999999999999997642 33333 34457899876
Q ss_pred E--EEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598 108 Q--MFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAA 151 (369)
Q Consensus 108 ~--~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~ 151 (369)
+ -++++ .....+++.++ -....++++|-..
T Consensus 59 ~~~~i~ts--------~~~~~~~l~~~------~~~~~v~vlG~~~ 90 (101)
T PF13344_consen 59 DEDEIITS--------GMAAAEYLKEH------KGGKKVYVLGSDG 90 (101)
T ss_dssp -GGGEEEH--------HHHHHHHHHHH------TTSSEEEEES-HH
T ss_pred CcCEEECh--------HHHHHHHHHhc------CCCCEEEEEcCHH
Confidence 3 23322 12233444442 2356788888764
No 171
>PRK04040 adenylate kinase; Provisional
Probab=98.66 E-value=1.5e-07 Score=84.47 Aligned_cols=36 Identities=28% Similarity=0.535 Sum_probs=32.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccC--CcEEEeCCcc
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPL--NYTTVNRDTL 306 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~--~~~~i~~D~~ 306 (369)
+|.+|+++|+|||||||+++.|++.+ ++.+++.+++
T Consensus 1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~ 38 (188)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDV 38 (188)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchH
Confidence 46799999999999999999999998 7888888775
No 172
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.66 E-value=8.6e-08 Score=86.37 Aligned_cols=88 Identities=20% Similarity=0.261 Sum_probs=71.7
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhc
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKN 134 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~ 134 (369)
++|++.++|++|++.|++++|+|+- -......+.+.+|++-..+++-.. .||.+.+|..+++.+
T Consensus 128 ~~~~~~~~l~~L~~~Gi~~~i~TGD------------~~~~a~~~~~~lgi~~~~v~a~~~---~kP~~k~~~~~i~~l- 191 (215)
T PF00702_consen 128 LRPGAKEALQELKEAGIKVAILTGD------------NESTASAIAKQLGIFDSIVFARVI---GKPEPKIFLRIIKEL- 191 (215)
T ss_dssp BHTTHHHHHHHHHHTTEEEEEEESS------------EHHHHHHHHHHTTSCSEEEEESHE---TTTHHHHHHHHHHHH-
T ss_pred chhhhhhhhhhhhccCcceeeeecc------------cccccccccccccccccccccccc---ccccchhHHHHHHHH-
Confidence 5799999999999999999999972 234566778899984222222111 799999999999996
Q ss_pred CCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCC
Q psy4598 135 GDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLN 177 (369)
Q Consensus 135 ~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~G 177 (369)
++++++++||||.. .|+.+++++|
T Consensus 192 ---~~~~~~v~~vGDg~----------------nD~~al~~Ag 215 (215)
T PF00702_consen 192 ---QVKPGEVAMVGDGV----------------NDAPALKAAG 215 (215)
T ss_dssp ---TCTGGGEEEEESSG----------------GHHHHHHHSS
T ss_pred ---hcCCCEEEEEccCH----------------HHHHHHHhCc
Confidence 67889999999999 8999999987
No 173
>PRK14526 adenylate kinase; Provisional
Probab=98.60 E-value=2.6e-07 Score=84.35 Aligned_cols=90 Identities=14% Similarity=0.275 Sum_probs=63.0
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-----------HH------------HHHHHHHHHHh---CCCcEE
Q psy4598 275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-----------WQ------------KCVSVMKAALD---SGLSVV 327 (369)
Q Consensus 275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-----------~~------------~~~~~~~~~l~---~g~~vI 327 (369)
|+|.|+|||||||+++.|++.+++.+++.+++ +. .+ ...+.+.+.+. ....+|
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~i 82 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNFI 82 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcEE
Confidence 67899999999999999999999999997776 21 00 11233334433 245799
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 328 VDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 328 iD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
+|+...+..+...+.+... ...++++++|.+++.+|-
T Consensus 83 lDGfPR~~~Qa~~l~~~~~----~~~vi~l~~~~~~~~~Rl 119 (211)
T PRK14526 83 LDGFPRNINQAKALDKFLP----NIKIINFLIDEELLIKRL 119 (211)
T ss_pred EECCCCCHHHHHHHHHhcC----CCEEEEEECCHHHHHHHH
Confidence 9988777666655544321 235788899999998883
No 174
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.60 E-value=1.9e-07 Score=87.99 Aligned_cols=107 Identities=19% Similarity=0.290 Sum_probs=73.9
Q ss_pred CCceEEEEecCCceeecCC--------CCCCCCCccccc--------cccccHHHHHHHHHHCCcEEEEEecCCCcCCCC
Q psy4598 23 NSAKIASFDLDGTLITTKS--------GKVFPVDTHDWK--------LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKK 86 (369)
Q Consensus 23 ~~~k~~~fDlDgTLi~~~s--------g~~~~~~~~d~~--------~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~ 86 (369)
....+++||+|+|++.... |..| +..+|. .++||+.+.|+.|+++|++++|+||.+.
T Consensus 73 ~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~--~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~----- 145 (266)
T TIGR01533 73 DKKYAIVLDLDETVLDNSPYQGYQVLNNKPF--DPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSE----- 145 (266)
T ss_pred CCCCEEEEeCccccccChHHHHHHhcCCCcC--CHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCc-----
Confidence 4567999999999986541 2222 234552 2589999999999999999999999531
Q ss_pred CCHHHHHHHHHHHHHHcCCCe---EEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598 87 MSTRDFQAKAEKIIKSLNVPV---QMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAA 151 (369)
Q Consensus 87 ~~~~~~~~~i~~~l~~l~i~~---~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~ 151 (369)
.........++.+|++. +.++.- .+ ++|++.-.+.+.+.+ +| .+||||+.
T Consensus 146 ----~~~~~T~~~Lkk~Gi~~~~~d~lllr-~~--~~~K~~rr~~I~~~y----~I----vl~vGD~~ 198 (266)
T TIGR01533 146 ----KEKAATLKNLKRFGFPQADEEHLLLK-KD--KSSKESRRQKVQKDY----EI----VLLFGDNL 198 (266)
T ss_pred ----chHHHHHHHHHHcCcCCCCcceEEeC-CC--CCCcHHHHHHHHhcC----CE----EEEECCCH
Confidence 22334556778899863 333333 22 356667777776665 45 89999998
No 175
>PLN02459 probable adenylate kinase
Probab=98.59 E-value=4.2e-07 Score=85.13 Aligned_cols=92 Identities=14% Similarity=0.197 Sum_probs=65.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-----------------------HHHHHHHHHHHHhC-----C
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-----------------------WQKCVSVMKAALDS-----G 323 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-----------------------~~~~~~~~~~~l~~-----g 323 (369)
..|+|.|+|||||||+|+.|++.+++.+|+..++ +. -+.+...+.+.+.. .
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~~~ 109 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGE 109 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCC
Confidence 3477789999999999999999999999997665 21 01122333444432 3
Q ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 324 LSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 324 ~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
..+|+|+.-.+..+...+... .. .-.+++|++|.+++.+|-
T Consensus 110 ~g~iLDGFPRt~~Qa~~Le~~---~~-id~Vi~L~v~d~~l~~Rl 150 (261)
T PLN02459 110 SGFILDGFPRTVRQAEILEGV---TD-IDLVVNLKLREEVLVEKC 150 (261)
T ss_pred ceEEEeCCCCCHHHHHHHHhc---CC-CCEEEEEECCHHHHHHHh
Confidence 579999998777666666443 22 235899999999998873
No 176
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.59 E-value=4e-07 Score=91.22 Aligned_cols=90 Identities=19% Similarity=0.278 Sum_probs=69.8
Q ss_pred cccEEEEEEcCCCCcHHHHHHHHhccCCcE-EEeCCcchh---------------------HHH----------------
Q psy4598 270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYT-TVNRDTLGS---------------------WQK---------------- 311 (369)
Q Consensus 270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~-~i~~D~~~~---------------------~~~---------------- 311 (369)
..|.+|+++|+|||||||++..|+..+++. +|+.|.++. |..
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~ 332 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAE 332 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchHH
Confidence 358999999999999999999999999986 679998631 111
Q ss_pred ---------------HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHH
Q psy4598 312 ---------------CVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEH 363 (369)
Q Consensus 312 ---------------~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~ 363 (369)
+...+..++..|.+||||+.++.+..+. .+...+..+..+.+.++.+.
T Consensus 333 vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~----~~~~~~~~~i~flv~isdee 395 (475)
T PRK12337 333 VLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLR----HPYQAGALVVPMLVTLPDEA 395 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHH----HHHhcCCceEEEEEEECCHH
Confidence 2344567789999999999999987754 45566777777777777653
No 177
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.59 E-value=1.2e-07 Score=81.23 Aligned_cols=97 Identities=24% Similarity=0.336 Sum_probs=76.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccC--CcEEEeCCcch--------------hHHHHHHHHHHHHhCCCcEEEeCCCCC
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPL--NYTTVNRDTLG--------------SWQKCVSVMKAALDSGLSVVVDNTNPD 334 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~--~~~~i~~D~~~--------------~~~~~~~~~~~~l~~g~~vIiD~tn~~ 334 (369)
||++-++.|+.||||||+...+...+ +..++|+|.+. .-+........+++.+.++..+.|...
T Consensus 1 m~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p~~p~~~~i~A~r~ai~~i~~~I~~~~~F~~ETtLS~ 80 (187)
T COG4185 1 MKRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISPDNPTSAAIQAARVAIDRIARLIDLGRPFIAETTLSG 80 (187)
T ss_pred CceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHcCCCcceEEeecc
Confidence 57889999999999999988877654 67899999983 124455556667789999999999865
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEEeCCH-HHHHHHc
Q psy4598 335 KESRHRYIEAAKQHGVRCIAVHMNISK-EHAKHNI 368 (369)
Q Consensus 335 ~~~r~~~~~la~~~~~~v~~v~l~~~~-e~~~~Rn 368 (369)
++ ..++++-|++.|+-+.+.|+-++. |.+.+|-
T Consensus 81 ~s-~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERV 114 (187)
T COG4185 81 PS-ILELIKTAKAAGFYIVLNYIVIDSVELAVERV 114 (187)
T ss_pred ch-HHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHH
Confidence 54 455667799999999988887664 6777764
No 178
>PLN02199 shikimate kinase
Probab=98.58 E-value=2.4e-07 Score=87.90 Aligned_cols=91 Identities=25% Similarity=0.288 Sum_probs=63.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-------------------hHHHHHHHHHHHHhCCCcEEEeCCCC
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-------------------SWQKCVSVMKAALDSGLSVVVDNTNP 333 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-------------------~~~~~~~~~~~~l~~g~~vIiD~tn~ 333 (369)
..|+|+|++||||||+++.|++.+++.+|+.|.+- .|+.+...+...+.....+||.+...
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VIStGGG 182 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGG 182 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEECCCc
Confidence 46899999999999999999999999999999852 13344444444444445677765442
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 334 DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 334 ~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
.-.+.....+.+ .| .+||+++|.|...+|-
T Consensus 183 -~V~~~~n~~~L~-~G---~vV~Ldas~E~l~~RL 212 (303)
T PLN02199 183 -AVIRPINWKYMH-KG---ISIWLDVPLEALAHRI 212 (303)
T ss_pred -ccCCHHHHHHHh-CC---eEEEEECCHHHHHHHH
Confidence 222333333333 34 4899999999999873
No 179
>PRK12338 hypothetical protein; Provisional
Probab=98.57 E-value=5.6e-07 Score=86.56 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=65.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEE-eCCcchh---------------------HH-------------------
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTV-NRDTLGS---------------------WQ------------------- 310 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i-~~D~~~~---------------------~~------------------- 310 (369)
|.+|+++|+|||||||+|+.|++.+++.++ +.|.++. |.
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~gf 83 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAGF 83 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHHH
Confidence 579999999999999999999999998877 6666531 11
Q ss_pred ---------HHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 311 ---------KCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 311 ---------~~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
.+...+..++..|.++||++..+.+....... ......+.++++..+.+..++|
T Consensus 84 ~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~---~~~~~~v~~~vl~~dee~h~~R 146 (319)
T PRK12338 84 EEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQ---FEENASIHFFILSADEEVHKER 146 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhh---hcccCceEEEEEECCHHHHHHH
Confidence 01123344567889999999998776554311 1123456777777777777665
No 180
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.54 E-value=2.4e-07 Score=78.70 Aligned_cols=84 Identities=15% Similarity=0.227 Sum_probs=56.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh---------------HHHHHHHHHHHHhCCCcEEEeCCCCCHHHH
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS---------------WQKCVSVMKAALDSGLSVVVDNTNPDKESR 338 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~---------------~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r 338 (369)
+|+++|+|||||||+|+.|++.+++.+++.|.+.. ...........+..+..+|+|+......
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~Vidg~~~~~~-- 78 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVAAIPEVRKALDERQRELAKKPGIVLEGRDIGTV-- 78 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHHHHHHhcccHhHHHHHHHHHHHHhhCCCEEEEeeeeeeE--
Confidence 47999999999999999999999999999995521 1111112222234455799997763211
Q ss_pred HHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 339 HRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 339 ~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
+ .......|++++|+++..+|
T Consensus 79 -----~---~~~~~~~i~l~~~~~~r~~R 99 (147)
T cd02020 79 -----V---FPDADLKIFLTASPEVRAKR 99 (147)
T ss_pred -----E---cCCCCEEEEEECCHHHHHHH
Confidence 0 11123579999999988766
No 181
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.54 E-value=5.5e-07 Score=77.97 Aligned_cols=76 Identities=24% Similarity=0.352 Sum_probs=64.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC-cEEEeCCcchh--HHHHHHHHHHHH--hCCCcEEEeCCCCCHHHHHHHHHHHHhc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLN-YTTVNRDTLGS--WQKCVSVMKAAL--DSGLSVVVDNTNPDKESRHRYIEAAKQH 348 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~-~~~i~~D~~~~--~~~~~~~~~~~l--~~g~~vIiD~tn~~~~~r~~~~~la~~~ 348 (369)
+|+=++.+||||||++.+|...++ |-|+..|++.. ..++.+.+.+.| .....||.|-.|....+|+++.+..++.
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~k~~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR~ql~~~~~~~ 80 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFGEWGHVQNDNITGKRKPKFIKAVLELLAKDTHPVVIADRNNHQKRERKQLFEDVSQL 80 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCCCCHHHHHHHHHHHHhhCCCCEEEEeCCCchHHHHHHHHHHHHHh
Confidence 356689999999999999999999 99999999965 566777777777 5556788999999999999998877764
Q ss_pred C
Q psy4598 349 G 349 (369)
Q Consensus 349 ~ 349 (369)
.
T Consensus 81 ~ 81 (168)
T PF08303_consen 81 K 81 (168)
T ss_pred c
Confidence 3
No 182
>PRK08233 hypothetical protein; Provisional
Probab=98.53 E-value=5.6e-07 Score=79.38 Aligned_cols=88 Identities=9% Similarity=0.162 Sum_probs=53.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCC-cEEEeCCcch---------h------------HHHHHHHHHHHHhCC--CcEE
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLN-YTTVNRDTLG---------S------------WQKCVSVMKAALDSG--LSVV 327 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~-~~~i~~D~~~---------~------------~~~~~~~~~~~l~~g--~~vI 327 (369)
+.+|.+.|+|||||||+|+.|++.++ ...+..|.+. . .+.+.+.+...++.. ..||
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi 82 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVDYII 82 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCceEEE
Confidence 36889999999999999999999874 3344444331 1 112233334444333 3456
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 328 VDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 328 iD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
+|.... .....+...+ . .+|++++|.+++++|
T Consensus 83 vd~~~~--~~~~~~~~~~---d---~~i~l~~~~~~~~~R 114 (182)
T PRK08233 83 VDYPFA--YLNSEMRQFI---D---VTIFIDTPLDIAMAR 114 (182)
T ss_pred Eeeehh--hccHHHHHHc---C---EEEEEcCCHHHHHHH
Confidence 675432 1112222222 1 689999999998776
No 183
>PRK04182 cytidylate kinase; Provisional
Probab=98.53 E-value=1.5e-07 Score=82.73 Aligned_cols=85 Identities=16% Similarity=0.244 Sum_probs=56.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-----------H----------HH-HHHHHHHHHhCCCcEEEeC
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-----------W----------QK-CVSVMKAALDSGLSVVVDN 330 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-----------~----------~~-~~~~~~~~l~~g~~vIiD~ 330 (369)
+|+|+|+|||||||+++.|++.+++.+++.|++ +. + .. +..........+.++|+|.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~g 81 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKEDNVVLEG 81 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCEEEEE
Confidence 689999999999999999999999999997543 11 0 01 1122222222556788887
Q ss_pred CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 331 TNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 331 tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
.... + +.+ ......|++++|.+++.+|.
T Consensus 82 ~~~~------~--~~~--~~~~~~V~l~a~~e~~~~Rl 109 (180)
T PRK04182 82 RLAG------W--MAK--DYADLKIWLKAPLEVRAERI 109 (180)
T ss_pred eecc------e--Eec--CCCCEEEEEECCHHHHHHHH
Confidence 5421 1 111 12446789999999998884
No 184
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.48 E-value=5e-07 Score=95.91 Aligned_cols=96 Identities=16% Similarity=0.276 Sum_probs=68.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcE-----EEeCCcchh-------------------HHHHHHHH---HH-HHhCCC
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYT-----TVNRDTLGS-------------------WQKCVSVM---KA-ALDSGL 324 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~-----~i~~D~~~~-------------------~~~~~~~~---~~-~l~~g~ 324 (369)
.+|+|+|+||+||||+|+.|++.+++. +++.+.++. ++.....+ .. .++.|.
T Consensus 216 ~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~~Gg 295 (664)
T PTZ00322 216 LIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICKTDG 295 (664)
T ss_pred eeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 589999999999999999999987444 444433320 11111111 11 234578
Q ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCC----eEEEEEEeCCHHHHHHHc
Q psy4598 325 SVVVDNTNPDKESRHRYIEAAKQHGV----RCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 325 ~vIiD~tn~~~~~r~~~~~la~~~~~----~v~~v~l~~~~e~~~~Rn 368 (369)
.+|+|++|.+...|..+.+.+++.+. .+.++..-|+.+...++|
T Consensus 296 vaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~n 343 (664)
T PTZ00322 296 VAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRN 343 (664)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHH
Confidence 99999999999999999898888875 677777778877666665
No 185
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.47 E-value=6.9e-07 Score=76.93 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=58.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh---------------------HHHHHHH-HHHHHhCCCcEEEeC
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS---------------------WQKCVSV-MKAALDSGLSVVVDN 330 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~---------------------~~~~~~~-~~~~l~~g~~vIiD~ 330 (369)
+|.+.|+|||||||+|+.|++.++..++++-.+ +. ++..... ..+.+. ..++|++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~-~~nvVleg 80 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAK-EGNVVLEG 80 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHH-cCCeEEhh
Confidence 588999999999999999999999999996543 31 2222222 333344 66888886
Q ss_pred CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 331 TNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 331 tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
-. .-|+. + .+.-..||+.+|.++-.+|
T Consensus 81 rL------A~Wi~--k--~~adlkI~L~Apl~vRa~R 107 (179)
T COG1102 81 RL------AGWIV--R--EYADLKIWLKAPLEVRAER 107 (179)
T ss_pred hh------HHHHh--c--cccceEEEEeCcHHHHHHH
Confidence 54 22332 2 4445679999999987776
No 186
>PRK08356 hypothetical protein; Provisional
Probab=98.41 E-value=2.7e-06 Score=76.57 Aligned_cols=87 Identities=8% Similarity=0.130 Sum_probs=58.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-----hh------------------------HHH----------HH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-----GS------------------------WQK----------CV 313 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-----~~------------------------~~~----------~~ 313 (369)
.+|+++|+|||||||+|+.|.+ .++.+|+..+. +. +.. ..
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~~ 84 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDILI 84 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHHH
Confidence 5789999999999999999964 78878887642 00 000 01
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 314 SVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 314 ~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
+.+.+.+.....+|+|+. .+..++..+... + ..++++++|.+++.+|
T Consensus 85 ~~~~~~~~~~~~ividG~-r~~~q~~~l~~~----~--~~vi~l~~~~~~~~~R 131 (195)
T PRK08356 85 RLAVDKKRNCKNIAIDGV-RSRGEVEAIKRM----G--GKVIYVEAKPEIRFER 131 (195)
T ss_pred HHHHHHhccCCeEEEcCc-CCHHHHHHHHhc----C--CEEEEEECCHHHHHHH
Confidence 223333333446889977 676666665432 2 2578999999998887
No 187
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.40 E-value=4.4e-06 Score=72.75 Aligned_cols=122 Identities=19% Similarity=0.344 Sum_probs=73.2
Q ss_pred EEEEecCCceeecCC-CCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHH---
Q psy4598 27 IASFDLDGTLITTKS-GKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKS--- 102 (369)
Q Consensus 27 ~~~fDlDgTLi~~~s-g~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~--- 102 (369)
++++|+||||..+.- |.....-..+| ..|++.+++++|+++||+++++|.-+ ..........+..
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~--~~~~~~~a~~~l~~~G~~ivy~TGRp---------~~~~~~t~~~l~~~~~ 69 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDW--THPGVAKLYRDIQNNGYKILYLTARP---------IGQADRTRSYLSQIKQ 69 (157)
T ss_pred CEEEecCCCCcccccccccccccccCc--CCHHHHHHHHHHHHcCCeEEEEcCCc---------HHHHHHHHHHHHHhhh
Confidence 579999999997641 11122222344 58999999999999999999999732 1111222333444
Q ss_pred --cCCCeE-EEEecCCC--------CCCCC---chhHHHHHHHHhcCCccccCCccEE--eeCccccccccCCCCCCCCC
Q psy4598 103 --LNVPVQ-MFVATQYD--------RYRKP---VPGMWEYLSQEKNGDLAIDISQSFY--AGDAAGRAANWAPKKKKDFA 166 (369)
Q Consensus 103 --l~i~~~-~~~~~~~~--------~~rKP---~~gm~~~~~~~~~~~~~i~~~~s~~--VGD~~gr~~~~~~~~~~d~s 166 (369)
.++|.. ++.+.+.. ..++| +..+++.+.+.+ . ....-|+ +||+.
T Consensus 70 ~~~~lp~g~li~~~g~~~~~~~~e~i~~~~~~~K~~~l~~i~~~~----~-~~~~~f~~~~gn~~--------------- 129 (157)
T smart00775 70 DGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKIACLRDIKSLF----P-PQGNPFYAGFGNRI--------------- 129 (157)
T ss_pred ccccCCCceEEEcCCcchhhhhcccccCCHHHHHHHHHHHHHHhc----C-CCCCCEEEEeCCCc---------------
Confidence 346543 33333221 23555 445566655542 1 1133444 56666
Q ss_pred cccHHHHHhCCCCc
Q psy4598 167 CTDHLFAFNLNLAF 180 (369)
Q Consensus 167 ~~D~~~A~n~Gi~f 180 (369)
+|+.+=.++||+-
T Consensus 130 -~D~~~y~~~gi~~ 142 (157)
T smart00775 130 -TDVISYSAVGIPP 142 (157)
T ss_pred -hhHHHHHHcCCCh
Confidence 8999999999974
No 188
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.40 E-value=1.6e-06 Score=76.60 Aligned_cols=89 Identities=17% Similarity=0.251 Sum_probs=56.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCC----cEEEeCCc----------c-----hhHHH-------------------HHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLN----YTTVNRDT----------L-----GSWQK-------------------CVS 314 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~----~~~i~~D~----------~-----~~~~~-------------------~~~ 314 (369)
.+|+++|+|||||||+++.|+..++ ..++.++. + ..+.. ...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 4789999999999999999988653 22221110 0 01111 112
Q ss_pred HHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 315 VMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 315 ~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
.+...+..|..||+|... ..+..+ ++....+.++|+++|.+++.+|.
T Consensus 82 ~i~~~~~~g~~vv~~g~~---~~~~~~----~~~~~~~~~i~l~~~~~~~~~Rl 128 (179)
T TIGR02322 82 EIDQWLEAGDVVVVNGSR---AVLPEA----RQRYPNLLVVNITASPDVLAQRL 128 (179)
T ss_pred HHHHHHhcCCEEEEECCH---HHHHHH----HHHCCCcEEEEEECCHHHHHHHH
Confidence 344566788889998752 223222 23333667899999999999884
No 189
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.40 E-value=1.4e-06 Score=84.07 Aligned_cols=94 Identities=14% Similarity=0.164 Sum_probs=59.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHH-HHHHHhCCCcEEEeCC
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSV-MKAALDSGLSVVVDNT 331 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~-~~~~l~~g~~vIiD~t 331 (369)
+...|+|+|+|||||||+++.|++.+++.+++.|.... |+..... +.+.+.....+||...
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~G 211 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIFALYGQEGYRRLERRALERLIAEHEEMVLATG 211 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEECC
Confidence 34689999999999999999999999999998886521 2222222 2333333334666554
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 332 NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 332 n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
......-..+..+.+ ...+||+.+|.+.+.+|-
T Consensus 212 gg~v~~~~~~~~l~~----~~~~V~L~a~~e~~~~Rl 244 (309)
T PRK08154 212 GGIVSEPATFDLLLS----HCYTVWLKASPEEHMARV 244 (309)
T ss_pred CchhCCHHHHHHHHh----CCEEEEEECCHHHHHHHH
Confidence 321111111212222 235899999999998874
No 190
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.39 E-value=7.5e-07 Score=77.48 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=55.7
Q ss_pred CCCcHHHHHHHHhccCCcEEEeCCcch------------------hHHHHHHHHHHHHhCCCcEEEeCCCC---CHHHHH
Q psy4598 281 QGSGKSSFVSTYLKPLNYTTVNRDTLG------------------SWQKCVSVMKAALDSGLSVVVDNTNP---DKESRH 339 (369)
Q Consensus 281 pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~~~~~~~~~~~l~~g~~vIiD~tn~---~~~~r~ 339 (369)
|||||||+++.|++.+++.+++.|.+- .|+.+...+...+......||.+... .++.++
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~~~ 80 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTGMSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLKEENRE 80 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhCCcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHHHHH
Confidence 799999999999999999999999872 24555555555555554777776332 444444
Q ss_pred HHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 340 RYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 340 ~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
.+ ++.+ .+||++.+.+.+.+|.
T Consensus 81 ~L----~~~g---~vI~L~~~~~~l~~Rl 102 (158)
T PF01202_consen 81 LL----KENG---LVIYLDADPEELAERL 102 (158)
T ss_dssp HH----HHHS---EEEEEE--HHHHHHHH
T ss_pred HH----HhCC---EEEEEeCCHHHHHHHH
Confidence 43 3334 4899999999998873
No 191
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.39 E-value=1.1e-06 Score=83.19 Aligned_cols=73 Identities=18% Similarity=0.295 Sum_probs=56.0
Q ss_pred CCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHH
Q psy4598 23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKS 102 (369)
Q Consensus 23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~ 102 (369)
.-.|+++|||||||+.+.. +-+.-.|++.++|++|+++|++++|+||.+ +..+..+++.
T Consensus 126 ~~~~~i~~D~D~TL~~~~~---------~v~irdp~V~EtL~eLkekGikLaIvTNg~------------Re~v~~~Le~ 184 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEE---------PVRIRDPFVYDSLDELKERGCVLVLWSYGN------------REHVVHSLKE 184 (303)
T ss_pred eeccEEEEecCCCccCCCC---------ccccCChhHHHHHHHHHHCCCEEEEEcCCC------------hHHHHHHHHH
Confidence 4568999999999997642 112236999999999999999999999943 2345678888
Q ss_pred cCCC--eEEEEecCCC
Q psy4598 103 LNVP--VQMFVATQYD 116 (369)
Q Consensus 103 l~i~--~~~~~~~~~~ 116 (369)
+|+. |++++|.+..
T Consensus 185 lgL~~yFDvII~~g~i 200 (303)
T PHA03398 185 TKLEGYFDIIICGGRK 200 (303)
T ss_pred cCCCccccEEEECCCc
Confidence 9885 7777776543
No 192
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.38 E-value=1.7e-07 Score=77.17 Aligned_cols=33 Identities=33% Similarity=0.625 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
+|+++|+|||||||+|+.|++.+++.+++.|++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecce
Confidence 589999999999999999999999999999984
No 193
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.37 E-value=1.5e-06 Score=75.84 Aligned_cols=85 Identities=14% Similarity=0.273 Sum_probs=57.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh--------------H-------HH-HHHHHHHHHhCCCcEEEeC
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS--------------W-------QK-CVSVMKAALDSGLSVVVDN 330 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~--------------~-------~~-~~~~~~~~l~~g~~vIiD~ 330 (369)
+|+++|+|||||||+|+.+++.+++.+++.|.+ +. + .. +...+.+....+..+|+|+
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Vi~g 81 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKNVVLES 81 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 689999999999999999999999999998653 11 0 01 1111222333556888898
Q ss_pred CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 331 TNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 331 tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
.... +. .+. ... ..|++++|.+++.+|.
T Consensus 82 ~~~~------~~--~~~-~~d-~~v~v~a~~~~r~~R~ 109 (171)
T TIGR02173 82 RLAG------WI--VRE-YAD-VKIWLKAPLEVRARRI 109 (171)
T ss_pred cccc------ee--ecC-CcC-EEEEEECCHHHHHHHH
Confidence 6532 11 111 122 4789999999988874
No 194
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.37 E-value=1.9e-06 Score=77.06 Aligned_cols=91 Identities=13% Similarity=0.201 Sum_probs=57.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCc----------------------EEEeCCcchh-----------------HHH
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNY----------------------TTVNRDTLGS-----------------WQK 311 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~----------------------~~i~~D~~~~-----------------~~~ 311 (369)
.+.+|+|+|||||||||+++.|.+..+- .+++.+.+.. |-.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt 82 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGT 82 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecC
Confidence 4689999999999999999999876521 1222222210 222
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHH
Q psy4598 312 CVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNIS-KEHAKHN 367 (369)
Q Consensus 312 ~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~-~e~~~~R 367 (369)
-.+.+...++.|+.+|+|-. . +.+..+.+.+.-.+.+|++.+| .++..+|
T Consensus 83 ~~~~i~~~~~~g~~~i~d~~---~---~g~~~l~~~~~~~~~~Ifi~pps~e~l~~R 133 (186)
T PRK14737 83 PKAFIEDAFKEGRSAIMDID---V---QGAKIIKEKFPERIVTIFIEPPSEEEWEER 133 (186)
T ss_pred cHHHHHHHHHcCCeEEEEcC---H---HHHHHHHHhCCCCeEEEEEECCCHHHHHHH
Confidence 24557788899999999953 2 2333333333334467778775 5766665
No 195
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.36 E-value=2.2e-06 Score=75.70 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=56.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeC----------------------Ccch-----------------hHHHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNR----------------------DTLG-----------------SWQKCV 313 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~----------------------D~~~-----------------~~~~~~ 313 (369)
++|+|+|++||||||+++.|++..+..+++. +.+. .|....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 81 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK 81 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence 4789999999999999999998653322221 1110 012224
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 314 SVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 314 ~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
..+..++.+|..+|+|.+. .. ...+.+.....+.++++.++.+.+.+|
T Consensus 82 ~~i~~~~~~g~~vi~d~~~---~~---~~~~~~~~~~~~~i~~~~~~~e~~~~R 129 (180)
T TIGR03263 82 SPVEEALAAGKDVLLEIDV---QG---ARQVKKKFPDAVSIFILPPSLEELERR 129 (180)
T ss_pred HHHHHHHHCCCeEEEECCH---HH---HHHHHHhCCCcEEEEEECCCHHHHHHH
Confidence 5677888999999999653 22 223333344445566667778888776
No 196
>KOG4622|consensus
Probab=98.35 E-value=7.7e-07 Score=78.63 Aligned_cols=96 Identities=23% Similarity=0.305 Sum_probs=73.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC------CcEEEeCCcch---------h-------HHHHHHHHHHHHh---------
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL------NYTTVNRDTLG---------S-------WQKCVSVMKAALD--------- 321 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~------~~~~i~~D~~~---------~-------~~~~~~~~~~~l~--------- 321 (369)
.++.++|.|+|||||+.+.+.-.. +.++++-|++. . +..-.+.+..++.
T Consensus 2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpSaD~a~keqRgr~~~~iEk~ISaiqedtdwppqv 81 (291)
T KOG4622|consen 2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPSADKAAKEQRGRFECHIEKCISAIQEDTDWPPQV 81 (291)
T ss_pred ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcchhhhHHHHhchHHHHHHHHHHHHhcccCCCchh
Confidence 478899999999999999986542 46677778773 1 1111222222222
Q ss_pred ----------CC-CcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 322 ----------SG-LSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 322 ----------~g-~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
.| +.+++|..+..+++|..+.++|+.+|+.+-.+|+..+..+|+++|
T Consensus 82 rrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaN 139 (291)
T KOG4622|consen 82 RRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQAN 139 (291)
T ss_pred eeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhc
Confidence 23 356789999999999999999999999999999999999999988
No 197
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.35 E-value=1.5e-06 Score=78.33 Aligned_cols=35 Identities=23% Similarity=0.465 Sum_probs=32.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
|+.+|.|+|++||||||+++.|.+ +++.+++.|.+
T Consensus 1 ~~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~ 35 (194)
T PRK00081 1 MMLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAI 35 (194)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHH
Confidence 356899999999999999999998 89999999997
No 198
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.34 E-value=5.2e-06 Score=73.90 Aligned_cols=96 Identities=20% Similarity=0.257 Sum_probs=59.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC---CcEEEeC---C------cchhH-----------------------HHHHHHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL---NYTTVNR---D------TLGSW-----------------------QKCVSVMK 317 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~---~~~~i~~---D------~~~~~-----------------------~~~~~~~~ 317 (369)
++|++.|++||||||+++.|++.+ +..++.. + .++.+ ....+...
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 80 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIK 80 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999875 3322221 1 11110 01112223
Q ss_pred HHHhCCCcEEEeCCCCC------------HHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 318 AALDSGLSVVVDNTNPD------------KESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 318 ~~l~~g~~vIiD~tn~~------------~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
.++..|..||+|....+ ......+...+.....+..++++++|.+++.+|.
T Consensus 81 ~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~ 143 (200)
T cd01672 81 PALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARI 143 (200)
T ss_pred HHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHH
Confidence 34567888999943321 2233444444444445668999999999999884
No 199
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.33 E-value=1.9e-06 Score=77.20 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC-CcEEEeCCcc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPL-NYTTVNRDTL 306 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~-~~~~i~~D~~ 306 (369)
+|.++|.|||||||+|+.|++.+ ++.+|+.|.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf 34 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDF 34 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccc
Confidence 47899999999999999999987 6899999987
No 200
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.33 E-value=3e-06 Score=86.64 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=59.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHHHHHHHhCCCcEEEeCCC---
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSVMKAALDSGLSVVVDNTN--- 332 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~~~~~l~~g~~vIiD~tn--- 332 (369)
-|+|+|+|||||||+++.|++.+++.+++.|.+.. |+.....+.+.+.....+|+.+..
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Gggvv 81 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGGVV 81 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCccc
Confidence 37999999999999999999999999999998731 222333333333333456665542
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 333 PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 333 ~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
.+.+.|+.+. +. .++|+++|.+++.+|-
T Consensus 82 ~~~~~r~~l~----~~----~vI~L~as~e~l~~Rl 109 (488)
T PRK13951 82 IDPENRELLK----KE----KTLFLYAPPEVLMERV 109 (488)
T ss_pred cChHHHHHHh----cC----eEEEEECCHHHHHHHh
Confidence 3445555443 22 3799999999999873
No 201
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.30 E-value=4e-06 Score=73.71 Aligned_cols=124 Identities=17% Similarity=0.255 Sum_probs=71.5
Q ss_pred ceEEEEecCCceeecCCCCC----CCCC---------ccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHH
Q psy4598 25 AKIASFDLDGTLITTKSGKV----FPVD---------THDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRD 91 (369)
Q Consensus 25 ~k~~~fDlDgTLi~~~sg~~----~~~~---------~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~ 91 (369)
.|++.||||+||.....-.. |... ..+-..+||+|++.|++|+++|++|+++|-. ...
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt--------~~P- 73 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRT--------DEP- 73 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE----------S-H-
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECC--------CCh-
Confidence 47899999999986532100 1001 1122337999999999999999999999931 111
Q ss_pred HHHHHHHHHHHcCCC----e-----EEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCC
Q psy4598 92 FQAKAEKIIKSLNVP----V-----QMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKK 162 (369)
Q Consensus 92 ~~~~i~~~l~~l~i~----~-----~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~ 162 (369)
+...++|+.++++ . ++|-. ...+.-.+...|..+.++. +|+.++.+|+-|..
T Consensus 74 --~~A~~~L~~l~i~~~~~~~~~~~~~F~~--~eI~~gsK~~Hf~~i~~~t----gI~y~eMlFFDDe~----------- 134 (169)
T PF12689_consen 74 --DWARELLKLLEIDDADGDGVPLIEYFDY--LEIYPGSKTTHFRRIHRKT----GIPYEEMLFFDDES----------- 134 (169)
T ss_dssp --HHHHHHHHHTT-C----------CCECE--EEESSS-HHHHHHHHHHHH-------GGGEEEEES-H-----------
T ss_pred --HHHHHHHHhcCCCccccccccchhhcch--hheecCchHHHHHHHHHhc----CCChhHEEEecCch-----------
Confidence 3455667777775 0 01100 1123336788999999875 79999999999997
Q ss_pred CCCCcccHHHHHhCCCCcc
Q psy4598 163 KDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 163 ~d~s~~D~~~A~n~Gi~f~ 181 (369)
.-+.-....|+.++
T Consensus 135 -----~N~~~v~~lGV~~v 148 (169)
T PF12689_consen 135 -----RNIEVVSKLGVTCV 148 (169)
T ss_dssp -----HHHHHHHTTT-EEE
T ss_pred -----hcceeeEecCcEEE
Confidence 46667777999985
No 202
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.30 E-value=3.8e-06 Score=77.00 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=36.4
Q ss_pred ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCC
Q psy4598 25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQG 80 (369)
Q Consensus 25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~ 80 (369)
.|++++|+||||..+.. .+-|...++|++|+++|.+++|+|-.+
T Consensus 3 ~kli~~DlDGTLl~~~~------------~i~~~~~~al~~l~~~G~~~~iaTGR~ 46 (230)
T PRK01158 3 IKAIAIDIDGTITDKDR------------RLSLKAVEAIRKAEKLGIPVILATGNV 46 (230)
T ss_pred eeEEEEecCCCcCCCCC------------ccCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 58999999999996432 156789999999999999999988654
No 203
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.30 E-value=1.8e-06 Score=78.85 Aligned_cols=99 Identities=19% Similarity=0.189 Sum_probs=71.9
Q ss_pred cccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCe--E-EEEecC---------CCCCCCC
Q psy4598 54 LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPV--Q-MFVATQ---------YDRYRKP 121 (369)
Q Consensus 54 ~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~--~-~~~~~~---------~~~~rKP 121 (369)
.++|++.+.++.|++.|++++|+|- .+...++.+.+.+|+.. . .+...+ ....++-
T Consensus 77 ~l~~ga~elv~~lk~~G~~v~iiSg------------g~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~ 144 (212)
T COG0560 77 RLTPGAEELVAALKAAGAKVVIISG------------GFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEG 144 (212)
T ss_pred cCCccHHHHHHHHHHCCCEEEEEcC------------ChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcch
Confidence 4689999999999999999999997 13445667778888741 1 111111 0112233
Q ss_pred chhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc-cCch
Q psy4598 122 VPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF-FTPE 184 (369)
Q Consensus 122 ~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f-~~pe 184 (369)
+-..++.+++++ ++++++++.|||+. .|+-.=..+|.+. ++|.
T Consensus 145 K~~~l~~~~~~~----g~~~~~~~a~gDs~----------------nDlpml~~ag~~ia~n~~ 188 (212)
T COG0560 145 KAKALRELAAEL----GIPLEETVAYGDSA----------------NDLPMLEAAGLPIAVNPK 188 (212)
T ss_pred HHHHHHHHHHHc----CCCHHHeEEEcCch----------------hhHHHHHhCCCCeEeCcC
Confidence 456777777775 68899999999999 7999999999987 5553
No 204
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=98.29 E-value=4.4e-06 Score=71.63 Aligned_cols=106 Identities=15% Similarity=0.227 Sum_probs=75.2
Q ss_pred hhhhhhccccccEEEEEEcCCCCcHHHHHHHHhccC--CcEEEeCCcch-------------------------------
Q psy4598 261 QKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPL--NYTTVNRDTLG------------------------------- 307 (369)
Q Consensus 261 ~~~~~~~~~~~~~lIll~G~pGSGKSTla~~L~~~~--~~~~i~~D~~~------------------------------- 307 (369)
..|.....-+.-++|+|.|.|.||||++|.+++... .+.+|..|.+-
T Consensus 12 ~~~~~~ag~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~ 91 (205)
T COG3896 12 YRLAAMAGMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVH 91 (205)
T ss_pred HHHHHHcCCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEee
Confidence 344444444445899999999999999999999865 57777777761
Q ss_pred ---hHHH----HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 308 ---SWQK----CVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 308 ---~~~~----~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
.++. ....+...+..|.++|.|+...++...-....+. .+++|.+|-+.||.|+..+|.
T Consensus 92 ~gpi~e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l--~g~~v~~VGV~~p~E~~~~Re 157 (205)
T COG3896 92 PGPILELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVL--EGCRVWMVGVHVPDEEGARRE 157 (205)
T ss_pred chhHHHHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHH--hCCceEEEEeeccHHHHHHHH
Confidence 0121 1233455668899999999886544444444433 388999999999999888774
No 205
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=98.29 E-value=2.7e-06 Score=71.12 Aligned_cols=86 Identities=22% Similarity=0.272 Sum_probs=57.6
Q ss_pred eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcC----CCCCCHHHHHHHHHHHHH
Q psy4598 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIG----RKKMSTRDFQAKAEKIIK 101 (369)
Q Consensus 26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~----~~~~~~~~~~~~i~~~l~ 101 (369)
|+++||+||||.....+ .|. +..+.+++.++|++|+++|+.|+++|-.+.-. .|.+..+.+ ..+.+.|+
T Consensus 2 K~i~~DiDGTL~~~~~~-~y~-----~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~-~~t~~wL~ 74 (126)
T TIGR01689 2 KRLVMDLDNTITLTENG-DYA-----NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTL-PIIILWLN 74 (126)
T ss_pred CEEEEeCCCCcccCCCC-ccc-----ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhH-HHHHHHHH
Confidence 78999999999864321 222 22368899999999999999999999644221 111222222 35667788
Q ss_pred HcCCCeEEEEecCCCCCCCCchh
Q psy4598 102 SLNVPVQMFVATQYDRYRKPVPG 124 (369)
Q Consensus 102 ~l~i~~~~~~~~~~~~~rKP~~g 124 (369)
+.++|++-++ .|||-+|
T Consensus 75 k~~ipYd~l~------~~kp~~~ 91 (126)
T TIGR01689 75 QHNVPYDEIY------VGKPWCG 91 (126)
T ss_pred HcCCCCceEE------eCCCcCC
Confidence 8999886333 5777654
No 206
>PRK06696 uridine kinase; Validated
Probab=98.28 E-value=6.5e-07 Score=82.34 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=32.4
Q ss_pred cccccEEEEEEcCCCCcHHHHHHHHhccC---C--cEEEeCCcc
Q psy4598 268 KAALDSVLIMIGSQGSGKSSFVSTYLKPL---N--YTTVNRDTL 306 (369)
Q Consensus 268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~---~--~~~i~~D~~ 306 (369)
+...|.+|.+.|+|||||||+|+.|++.+ + +.+++.|++
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 34567899999999999999999999976 3 456678887
No 207
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.28 E-value=3.8e-06 Score=76.51 Aligned_cols=43 Identities=19% Similarity=0.374 Sum_probs=36.6
Q ss_pred eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCC
Q psy4598 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQG 80 (369)
Q Consensus 26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~ 80 (369)
|++++|+||||..... .+.|...++|++|+++|++++|+|..+
T Consensus 2 k~v~~DlDGTLl~~~~------------~i~~~~~~~i~~l~~~g~~~~~~TGR~ 44 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNR------------MISERAIEAIRKAEKKGIPVSLVTGNT 44 (215)
T ss_pred cEEEEecCCCcCCCCc------------ccCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 7899999999995431 267899999999999999999999754
No 208
>PRK11590 hypothetical protein; Provisional
Probab=98.27 E-value=2.6e-06 Score=77.58 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=62.3
Q ss_pred ccccHHHHH-HHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC-CeEEEEecCC-----CC-CCCCchh--
Q psy4598 55 LFSNIESVL-KQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV-PVQMFVATQY-----DR-YRKPVPG-- 124 (369)
Q Consensus 55 ~~p~v~~~L-~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i-~~~~~~~~~~-----~~-~rKP~~g-- 124 (369)
++|++.+.| +.|++.|++++|+||.+ ...++.+++.+|+ ..+-++|+.- .. ...|.-|
T Consensus 96 ~~pga~e~L~~~l~~~G~~l~IvSas~------------~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~ 163 (211)
T PRK11590 96 AFPVVQERLTTYLLSSDADVWLITGSP------------QPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHE 163 (211)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEeCCc------------HHHHHHHHHHccccccCceEEEEEEEEEccEECCccCCChH
Confidence 489999999 56888999999999953 2345566677663 1222233320 00 1112111
Q ss_pred HHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc-cCchh
Q psy4598 125 MWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF-FTPEQ 185 (369)
Q Consensus 125 m~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f-~~pe~ 185 (369)
=...+.+.+ +.+...+++-||+. +|+..-.-+|-++ ++|..
T Consensus 164 K~~~l~~~~----~~~~~~~~aY~Ds~----------------~D~pmL~~a~~~~~vnp~~ 205 (211)
T PRK11590 164 KVAQLERKI----GTPLRLYSGYSDSK----------------QDNPLLYFCQHRWRVTPRG 205 (211)
T ss_pred HHHHHHHHh----CCCcceEEEecCCc----------------ccHHHHHhCCCCEEECccH
Confidence 112222222 34667889999999 8999999999887 66654
No 209
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.27 E-value=1.3e-05 Score=72.14 Aligned_cols=96 Identities=17% Similarity=0.133 Sum_probs=57.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeC--C----------------cchh-----------HHHHHHHHH
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNR--D----------------TLGS-----------WQKCVSVMK 317 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~--D----------------~~~~-----------~~~~~~~~~ 317 (369)
..+|++.|++||||||+++.|++.+ ++..... + .+.. +......+.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~ 82 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEVIK 82 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999864 2222110 0 1100 112223344
Q ss_pred HHHhCCCcEEEeCCCCC------------HHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 318 AALDSGLSVVVDNTNPD------------KESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 318 ~~l~~g~~vIiD~tn~~------------~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
..+..|..||+|-...+ ...-..+...+...-.+-.++++++|.+++.+|
T Consensus 83 ~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~R 144 (205)
T PRK00698 83 PALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLAR 144 (205)
T ss_pred HHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHH
Confidence 55677889999933221 111222222222223466899999999999887
No 210
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.25 E-value=6.7e-06 Score=74.63 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=32.0
Q ss_pred cccEEEEEEcCCCCcHHHHHHHHhccC---CcEEEeCCcc
Q psy4598 270 ALDSVLIMIGSQGSGKSSFVSTYLKPL---NYTTVNRDTL 306 (369)
Q Consensus 270 ~~~~lIll~G~pGSGKSTla~~L~~~~---~~~~i~~D~~ 306 (369)
..+.+|.|+|+|||||||+++.|++.+ .+.+++.|.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 356899999999999999999999986 4677888876
No 211
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.24 E-value=2.9e-06 Score=76.48 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=32.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG 307 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~ 307 (369)
.+|.++|++||||||+++.|.+.+|+.+|+.|.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~ 36 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYA 36 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHH
Confidence 47899999999999999999998899999999973
No 212
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.23 E-value=5.3e-06 Score=74.88 Aligned_cols=90 Identities=17% Similarity=0.233 Sum_probs=55.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEE----------------------eCCcchh-----------------HHHH
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTV----------------------NRDTLGS-----------------WQKC 312 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i----------------------~~D~~~~-----------------~~~~ 312 (369)
..+|+|+|++||||||+++.|+..++...+ +.+.+.. |...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 84 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGTP 84 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccCc
Confidence 368999999999999999999987641111 1111110 1111
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 313 VSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 313 ~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
...+...+..|..+|+|... ... ..+....+-.+.++++.++.+++.+|
T Consensus 85 ~~~i~~~l~~g~~vi~dl~~---~g~---~~l~~~~~~~~~I~i~~~s~~~l~~R 133 (205)
T PRK00300 85 RSPVEEALAAGKDVLLEIDW---QGA---RQVKKKMPDAVSIFILPPSLEELERR 133 (205)
T ss_pred HHHHHHHHHcCCeEEEeCCH---HHH---HHHHHhCCCcEEEEEECcCHHHHHHH
Confidence 34567788899999999653 222 23334444334455556778777776
No 213
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.23 E-value=3.4e-06 Score=75.33 Aligned_cols=33 Identities=21% Similarity=0.482 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
+|.++|.+||||||+++.|.+..++.+++.|.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~ 33 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKI 33 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHH
Confidence 378999999999999999999888999999997
No 214
>PRK13975 thymidylate kinase; Provisional
Probab=98.22 E-value=8.5e-06 Score=72.92 Aligned_cols=28 Identities=25% Similarity=0.461 Sum_probs=25.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCc
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNY 298 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~ 298 (369)
|..+|++.|++||||||+++.|++.++.
T Consensus 1 m~~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 1 MNKFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4579999999999999999999999874
No 215
>KOG4238|consensus
Probab=98.21 E-value=2e-06 Score=82.34 Aligned_cols=96 Identities=16% Similarity=0.236 Sum_probs=80.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----------------HHHHHHHHHHHHhCCCcEEEeCC
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----------------WQKCVSVMKAALDSGLSVVVDNT 331 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vIiD~t 331 (369)
+-|+++|++|+||||++-+|.+.+ ++.-++.|.++. .+++.+.++-..+.|...|-.-.
T Consensus 51 ctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfadaglvcitsfi 130 (627)
T KOG4238|consen 51 CTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFADAGLVCITSFI 130 (627)
T ss_pred eeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhcCCceeeehhc
Confidence 689999999999999999998864 577788888852 34556666667788877776666
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 332 NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 332 n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
.+..+.|...+++....+.++..|++++|+++|.+|+
T Consensus 131 spf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd 167 (627)
T KOG4238|consen 131 SPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRD 167 (627)
T ss_pred ChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcC
Confidence 7777888888999899999999999999999999986
No 216
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=98.21 E-value=4.7e-06 Score=81.15 Aligned_cols=103 Identities=17% Similarity=0.097 Sum_probs=70.7
Q ss_pred ccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc-C-------C--CeEEEEecCC---
Q psy4598 49 THDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL-N-------V--PVQMFVATQY--- 115 (369)
Q Consensus 49 ~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l-~-------i--~~~~~~~~~~--- 115 (369)
+.+....+|++++.|+.|+++|++++|+||.+ . ..++.+++.+ | + .|+++++...
T Consensus 179 p~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~---------~---~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~ 246 (343)
T TIGR02244 179 PEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSD---------Y---DYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPG 246 (343)
T ss_pred HHHHhccchhHHHHHHHHHHCCCeEEEEeCCC---------H---HHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCc
Confidence 44444568999999999999999999999943 2 2344445553 4 3 4776665421
Q ss_pred --------------CCCCCCch------------hHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCccc
Q psy4598 116 --------------DRYRKPVP------------GMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTD 169 (369)
Q Consensus 116 --------------~~~rKP~~------------gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D 169 (369)
...-++.. |-|..+.+.+ ++..++++||||..- +|
T Consensus 247 FF~~~~pf~~v~~~~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l----~~~~~~vlYvGD~i~---------------~D 307 (343)
T TIGR02244 247 FFTEGRPFRQVDVETGSLKWGEVDGLEPGKVYSGGSLKQFHELL----KWRGKEVLYFGDHIY---------------GD 307 (343)
T ss_pred ccCCCCceEEEeCCCCcccCCccccccCCCeEeCCCHHHHHHHH----CCCCCcEEEECCcch---------------HH
Confidence 00011111 4556666654 678899999999983 89
Q ss_pred HHHHH-hCCCCccC
Q psy4598 170 HLFAF-NLNLAFFT 182 (369)
Q Consensus 170 ~~~A~-n~Gi~f~~ 182 (369)
+..|+ .+|++++.
T Consensus 308 i~~~kk~~Gw~Tvl 321 (343)
T TIGR02244 308 LLRSKKKRGWRTAA 321 (343)
T ss_pred HHhhHHhcCcEEEE
Confidence 99998 99999954
No 217
>PRK13973 thymidylate kinase; Provisional
Probab=98.21 E-value=1.6e-05 Score=72.64 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=61.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC---CcEEEeC---------------------Ccch-----------hHHHHHHHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL---NYTTVNR---------------------DTLG-----------SWQKCVSVMK 317 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~---~~~~i~~---------------------D~~~-----------~~~~~~~~~~ 317 (369)
.+|++-|++||||||.++.|++.+ +..++.. +.+. .++.....+.
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~ 83 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEVIR 83 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999986 5444422 0110 0122234456
Q ss_pred HHHhCCCcEEEeCCCCC------------HHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 318 AALDSGLSVVVDNTNPD------------KESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 318 ~~l~~g~~vIiD~tn~~------------~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
.++..|..||.|-...+ ......+...+...-.+=.++++++|++++.+|
T Consensus 84 ~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~R 145 (213)
T PRK13973 84 PALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLER 145 (213)
T ss_pred HHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHH
Confidence 67888988888875522 112222222222223466899999999999887
No 218
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.20 E-value=1.7e-05 Score=75.70 Aligned_cols=93 Identities=17% Similarity=0.280 Sum_probs=64.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcE-EEeCCcch------------------hH---H------------------
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYT-TVNRDTLG------------------SW---Q------------------ 310 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~-~i~~D~~~------------------~~---~------------------ 310 (369)
.|.+|+++|++||||||+|..|++.++.. +|+.|.++ .| .
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~~ 170 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFER 170 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHHH
Confidence 57899999999999999999999999875 78888875 11 1
Q ss_pred -------HHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCH-HHHHHH
Q psy4598 311 -------KCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISK-EHAKHN 367 (369)
Q Consensus 311 -------~~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~-e~~~~R 367 (369)
.+...+..++..|.++|+++....+....... .+ .-.+..+++.++. +..++|
T Consensus 171 ~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~---~~-~~~~i~~~l~i~~ee~h~~R 231 (301)
T PRK04220 171 HVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKY---LE-NPNVFMFVLTLSDEEAHKAR 231 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhh---hc-CCCEEEEEEEECCHHHHHHH
Confidence 02234456678999999999999887644421 22 2334556666554 444433
No 219
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.19 E-value=6.7e-06 Score=74.71 Aligned_cols=93 Identities=16% Similarity=0.234 Sum_probs=55.5
Q ss_pred cccccEEEEEEcCCCCcHHHHHHHHhccC-Cc---------------------EEEeCCcchh-----------------
Q psy4598 268 KAALDSVLIMIGSQGSGKSSFVSTYLKPL-NY---------------------TTVNRDTLGS----------------- 308 (369)
Q Consensus 268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~-~~---------------------~~i~~D~~~~----------------- 308 (369)
.+..+.+|+|+|||||||||+++.|.+.. .. .+++.+.+..
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~ 88 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY 88 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence 35567899999999999999999997642 11 1112222210
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEe-CCHHHHHHH
Q psy4598 309 WQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMN-ISKEHAKHN 367 (369)
Q Consensus 309 ~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~-~~~e~~~~R 367 (369)
|..-...+...++.|+.+|+|... +.+..+ ++....+.++++. ++.+++.+|
T Consensus 89 YGt~~~~i~~~~~~g~~vi~~~~~---~g~~~l----~~~~pd~~~if~~pps~e~l~~R 141 (206)
T PRK14738 89 YGVPKAPVRQALASGRDVIVKVDV---QGAASI----KRLVPEAVFIFLAPPSMDELTRR 141 (206)
T ss_pred ecCCHHHHHHHHHcCCcEEEEcCH---HHHHHH----HHhCCCeEEEEEeCCCHHHHHHH
Confidence 111124667788999999998644 333333 3334445455553 455666665
No 220
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.18 E-value=4.7e-06 Score=73.96 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
+|.|+|.|||||||+++.+.+ +++.+|+.|.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~ 32 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKI 32 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHH
Confidence 478999999999999999999 89999999987
No 221
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.17 E-value=9.6e-06 Score=73.61 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=32.6
Q ss_pred ccccccEEEEEEcCCCCcHHHHHHHHhccC---CcEEEeCCcc
Q psy4598 267 MKAALDSVLIMIGSQGSGKSSFVSTYLKPL---NYTTVNRDTL 306 (369)
Q Consensus 267 ~~~~~~~lIll~G~pGSGKSTla~~L~~~~---~~~~i~~D~~ 306 (369)
|.++...+|.++|++||||||+++.|...+ ++.+++.|.+
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~ 43 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY 43 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence 345566899999999999999999999865 3667888775
No 222
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.17 E-value=1e-05 Score=73.90 Aligned_cols=43 Identities=12% Similarity=0.013 Sum_probs=36.1
Q ss_pred CCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598 119 RKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 119 rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~ 181 (369)
+.++...+.++++++ +++++++++|||+. .|+.++..+|+.+.
T Consensus 147 ~~~K~~~i~~l~~~~----~i~~~~~i~~GD~~----------------NDi~m~~~ag~~va 189 (225)
T TIGR01482 147 GVNKGVAVKKLKEKL----GIKPGETLVCGDSE----------------NDIDLFEVPGFGVA 189 (225)
T ss_pred CCCHHHHHHHHHHHh----CCCHHHEEEECCCH----------------hhHHHHHhcCceEE
Confidence 345566788888875 78899999999998 89999999999873
No 223
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.14 E-value=1.3e-05 Score=69.71 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=68.9
Q ss_pred CCCceEEEEecCCceeecCCCCCCCC-----------------------CccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598 22 CNSAKIASFDLDGTLITTKSGKVFPV-----------------------DTHDWKLLFSNIESVLKQYLDDGYKLVIFTN 78 (369)
Q Consensus 22 ~~~~k~~~fDlDgTLi~~~sg~~~~~-----------------------~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN 78 (369)
..+++++++|||.||+.+........ ....+..++||+.+.|++|.+. |.++|+||
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~ 81 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTM 81 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeC
Confidence 45678899999999998754221111 0112234689999999999855 99999999
Q ss_pred CCCcCCCCCCHHHHHHHHHHHHHHcCC---Ce-EEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598 79 QGAIGRKKMSTRDFQAKAEKIIKSLNV---PV-QMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAA 151 (369)
Q Consensus 79 q~gi~~~~~~~~~~~~~i~~~l~~l~i---~~-~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~ 151 (369)
.+ +.....+++.++. .| ..+++.+.+. .+...- ++.. ++.+++.+++|.|+.
T Consensus 82 ~~------------~~yA~~vl~~ldp~~~~F~~ri~~rd~~~--~~~~Kd----L~~i---~~~d~~~vvivDd~~ 137 (156)
T TIGR02250 82 GT------------RAYAQAIAKLIDPDGKYFGDRIISRDESG--SPHTKS----LLRL---FPADESMVVIIDDRE 137 (156)
T ss_pred Cc------------HHHHHHHHHHhCcCCCeeccEEEEeccCC--CCcccc----HHHH---cCCCcccEEEEeCCH
Confidence 43 3345566677664 35 4555554432 222212 2221 246788999999986
No 224
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.12 E-value=2e-05 Score=74.39 Aligned_cols=96 Identities=16% Similarity=0.258 Sum_probs=62.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhHHHHHHHHHHHH--hCCCcEEEeCCCCC-HHHHHHHHHHHHhc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAAL--DSGLSVVVDNTNPD-KESRHRYIEAAKQH 348 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~~~~~~~~~~~l--~~g~~vIiD~tn~~-~~~r~~~~~la~~~ 348 (369)
+.+|+++|++||||||..+.|.. +|+..++.=-..-...+.+.+...- ..+..+++|.-+.. .......+.-.++.
T Consensus 1 m~~vIiTGlSGaGKs~Al~~lED-~Gy~cvDNlP~~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~~~~~~~l~~~ 79 (284)
T PF03668_consen 1 MELVIITGLSGAGKSTALRALED-LGYYCVDNLPPSLLPQLIELLAQSNSKIEKVAIVIDIRSREFFEDLFEALDELRKK 79 (284)
T ss_pred CeEEEEeCCCcCCHHHHHHHHHh-cCeeEEcCCcHHHHHHHHHHHHhcCCCCceEEEEEeCCChHHHHHHHHHHHHHHhc
Confidence 36899999999999999988854 5555554333233334444333211 12346789987643 22233334444566
Q ss_pred CCeEEEEEEeCCHHHHHHHc
Q psy4598 349 GVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 349 ~~~v~~v~l~~~~e~~~~Rn 368 (369)
++.+.+++++++.++..+|-
T Consensus 80 ~~~~~ilFLdA~d~~LirRy 99 (284)
T PF03668_consen 80 GIDVRILFLDASDEVLIRRY 99 (284)
T ss_pred CCceEEEEEECChHHHHHHH
Confidence 99999999999999999883
No 225
>PRK07667 uridine kinase; Provisional
Probab=98.12 E-value=2.1e-05 Score=70.76 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=30.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL 306 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~ 306 (369)
+.+|.|.|+|||||||+++.|++.+ +..+++.|.+
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 3799999999999999999999864 4678888885
No 226
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.11 E-value=6.9e-06 Score=61.25 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=35.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc---CCcEEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHH
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKP---LNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRH 339 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~---~~~~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r~ 339 (369)
+|+++|+|||||||+++.|++. .++.+++. .+|+|........|.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~---------------------~~I~eg~~~~~~~~~ 48 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE---------------------IVILEGLYASYKSRD 48 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE---------------------EEEecchhhhhhhHH
Confidence 3788999999999999999998 56666654 788888876555443
No 227
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.11 E-value=2.2e-06 Score=70.70 Aligned_cols=84 Identities=15% Similarity=0.247 Sum_probs=48.8
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCcEEE----------e-CCc-----ch-----hHHHHHHHHHHH---HhCCCcEEEeC
Q psy4598 275 LIMIGSQGSGKSSFVSTYLKPLNYTTV----------N-RDT-----LG-----SWQKCVSVMKAA---LDSGLSVVVDN 330 (369)
Q Consensus 275 Ill~G~pGSGKSTla~~L~~~~~~~~i----------~-~D~-----~~-----~~~~~~~~~~~~---l~~g~~vIiD~ 330 (369)
|+|.|+|||||||+|+.|+++++..+. . .+. .. ........+... ...+..+|+|.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~ 80 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGRNIIIDG 80 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTSCEEEEE
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCCcEEEec
Confidence 789999999999999999998411110 0 000 00 112233333332 45677899998
Q ss_pred CCCCHHHHHHHHHHHHhcCCeEEE-EEEeCCHHHHHHHc
Q psy4598 331 TNPDKESRHRYIEAAKQHGVRCIA-VHMNISKEHAKHNI 368 (369)
Q Consensus 331 tn~~~~~r~~~~~la~~~~~~v~~-v~l~~~~e~~~~Rn 368 (369)
..... ......... |+++||++++.+|-
T Consensus 81 ~~~~~----------~~~~~~~~~~i~L~~~~e~~~~R~ 109 (129)
T PF13238_consen 81 ILSNL----------ELERLFDIKFIFLDCSPEELRKRL 109 (129)
T ss_dssp SSEEE----------CETTEEEESSEEEE--HHHHHHHH
T ss_pred ccchh----------cccccceeeEEEEECCHHHHHHHH
Confidence 76321 111222233 99999999999883
No 228
>PLN02842 nucleotide kinase
Probab=98.10 E-value=1.1e-05 Score=82.19 Aligned_cols=89 Identities=11% Similarity=0.144 Sum_probs=58.6
Q ss_pred EEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-----------H------------HHHHHHHHHHHh----CCCcEE
Q psy4598 276 IMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-----------W------------QKCVSVMKAALD----SGLSVV 327 (369)
Q Consensus 276 ll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-----------~------------~~~~~~~~~~l~----~g~~vI 327 (369)
+|.|+|||||||+++.|++.++..+|+.+++ +. . ..+...+...++ ....+|
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I 80 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL 80 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence 5789999999999999999999999997664 21 0 112222223332 124588
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 328 VDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 328 iD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
+|+...+......+. +....+-.++++++|.+++++|
T Consensus 81 LDGfPRt~~Qa~~Le---~~~~~PDlVI~LDvpdevlleR 117 (505)
T PLN02842 81 LDGYPRSFAQAQSLE---KLKIRPDIFILLDVPDEILIDR 117 (505)
T ss_pred EeCCCCcHHHHHHHH---hcCCCCCEEEEEeCCHHHHHHH
Confidence 898655544333322 2222345699999999999888
No 229
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.10 E-value=1.5e-05 Score=71.17 Aligned_cols=96 Identities=17% Similarity=0.194 Sum_probs=56.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCc-----EEEeCC---c----chhH-----------------------HHHHHHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNY-----TTVNRD---T----LGSW-----------------------QKCVSVMK 317 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~-----~~i~~D---~----~~~~-----------------------~~~~~~~~ 317 (369)
++|++.|++||||||+++.|++.++. .++... . ++.+ +.....+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~i~ 83 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDKIK 83 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999988632 222110 0 0000 11123344
Q ss_pred HHHhCCCcEEEeCCCCCHH---------HHHHHHHHHHhcC--CeEEEEEEeCCHHHHHHHc
Q psy4598 318 AALDSGLSVVVDNTNPDKE---------SRHRYIEAAKQHG--VRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 318 ~~l~~g~~vIiD~tn~~~~---------~r~~~~~la~~~~--~~v~~v~l~~~~e~~~~Rn 368 (369)
.++..|..||+|-...+.. ....+..+..... .+-.++++++|.+++++|.
T Consensus 84 ~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~ 145 (195)
T TIGR00041 84 PALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERL 145 (195)
T ss_pred HHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH
Confidence 5667788899995322211 1122222222221 2456899999999999884
No 230
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=98.10 E-value=9.8e-06 Score=76.61 Aligned_cols=90 Identities=17% Similarity=0.107 Sum_probs=67.3
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEE------EecCCCCCCCCch---
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMF------VATQYDRYRKPVP--- 123 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~------~~~~~~~~rKP~~--- 123 (369)
+.||+.+.|+.|++.|++++|+|+ | +...++.+++++|+ ++..+ +..+.....+|.|
T Consensus 122 l~pG~~efl~~L~~~GIpv~IvS~--G----------~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~ 189 (277)
T TIGR01544 122 LKDGYENFFDKLQQHSIPVFIFSA--G----------IGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIH 189 (277)
T ss_pred cCcCHHHHHHHHHHCCCcEEEEeC--C----------cHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCccc
Confidence 579999999999999999999998 2 35678888998888 33333 2233344467777
Q ss_pred ------hHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHH
Q psy4598 124 ------GMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAF 174 (369)
Q Consensus 124 ------gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~ 174 (369)
.+++.+.+.++ ..++++++++|||++ +|+.+|.
T Consensus 190 ~~~K~~~v~~~~~~~~~--~~~~~~~vI~vGDs~----------------~Dl~ma~ 228 (277)
T TIGR01544 190 TFNKNHDVALRNTEYFN--QLKDRSNIILLGDSQ----------------GDLRMAD 228 (277)
T ss_pred ccccHHHHHHHHHHHhC--ccCCcceEEEECcCh----------------hhhhHhc
Confidence 56666666542 127889999999999 7998866
No 231
>PLN02924 thymidylate kinase
Probab=98.08 E-value=2e-05 Score=72.42 Aligned_cols=98 Identities=22% Similarity=0.271 Sum_probs=62.6
Q ss_pred cccEEEEEEcCCCCcHHHHHHHHhccCC-----cEEEe-CC--c-----ch----------h-----------HHHHHHH
Q psy4598 270 ALDSVLIMIGSQGSGKSSFVSTYLKPLN-----YTTVN-RD--T-----LG----------S-----------WQKCVSV 315 (369)
Q Consensus 270 ~~~~lIll~G~pGSGKSTla~~L~~~~~-----~~~i~-~D--~-----~~----------~-----------~~~~~~~ 315 (369)
.+..+|++.|++||||||+++.|++.+. +.++. .+ . ++ . ++. ...
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~-~~~ 92 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEK-RSL 92 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH-HHH
Confidence 3457999999999999999999998752 22221 11 1 11 0 111 233
Q ss_pred HHHHHhCCCcEEEeCCCCCHHHH--------HHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 316 MKAALDSGLSVVVDNTNPDKESR--------HRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 316 ~~~~l~~g~~vIiD~tn~~~~~r--------~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
+..+++.|..||.|-...+.-.. +.+..+....-.+-.++++++|.+++.+|.
T Consensus 93 I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~ 153 (220)
T PLN02924 93 MERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERG 153 (220)
T ss_pred HHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHh
Confidence 56677889999999876532111 222233332334678999999999999883
No 232
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.08 E-value=1e-05 Score=73.84 Aligned_cols=99 Identities=13% Similarity=0.049 Sum_probs=60.7
Q ss_pred ccccHHHHHH-HHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC-CeEEEEecC----CC-C-CCCCchh--
Q psy4598 55 LFSNIESVLK-QYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV-PVQMFVATQ----YD-R-YRKPVPG-- 124 (369)
Q Consensus 55 ~~p~v~~~L~-~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i-~~~~~~~~~----~~-~-~rKP~~g-- 124 (369)
++|++.+.|+ .++++|++++|+||.+ ...++.+++..++ ..+-++|+. +. . ...|.-|
T Consensus 95 l~pga~e~L~~~l~~~G~~v~IvSas~------------~~~~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~ 162 (210)
T TIGR01545 95 AFPLVAERLRQYLESSDADIWLITGSP------------QPLVEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHE 162 (210)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEcCCc------------HHHHHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChH
Confidence 6899999996 7888999999999943 2234455555433 112233442 10 0 1111111
Q ss_pred HHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc-cCchh
Q psy4598 125 MWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF-FTPEQ 185 (369)
Q Consensus 125 m~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f-~~pe~ 185 (369)
=...+.+.+ +.+.+.+++-||+. +|+..-.-+|-++ ++|..
T Consensus 163 Kv~rl~~~~----~~~~~~~~aYsDS~----------------~D~pmL~~a~~~~~Vnp~~ 204 (210)
T TIGR01545 163 KVAQLEQKI----GSPLKLYSGYSDSK----------------QDNPLLAFCEHRWRVSKRG 204 (210)
T ss_pred HHHHHHHHh----CCChhheEEecCCc----------------ccHHHHHhCCCcEEECcch
Confidence 112222222 23567889999999 7999999999887 66654
No 233
>PRK06761 hypothetical protein; Provisional
Probab=98.07 E-value=1.6e-05 Score=75.48 Aligned_cols=93 Identities=12% Similarity=0.150 Sum_probs=61.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcE------EEeCCcch-------------hHHHH--------HHHHHHHHhCCC
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYT------TVNRDTLG-------------SWQKC--------VSVMKAALDSGL 324 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~------~i~~D~~~-------------~~~~~--------~~~~~~~l~~g~ 324 (369)
..+|+++|+|||||||+++.+++.+... +...|... .+..+ ......+...|.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~ 82 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGD 82 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 4689999999999999999999987531 23333211 11111 123445667888
Q ss_pred cEEEeCCCCCHHHHHHHHH-HHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 325 SVVVDNTNPDKESRHRYIE-AAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 325 ~vIiD~tn~~~~~r~~~~~-la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
.+|+-..-.....|+.+.. +.. ...+..+| .+|.|...+|
T Consensus 83 ~~i~~~~~l~~~yr~~~~~~~~~--~~~v~~~h-~~p~e~i~~R 123 (282)
T PRK06761 83 YYLLPYRKIKNEFGDQFSDELFN--DISKNDIY-ELPFDKNTEL 123 (282)
T ss_pred eEEEEehhhhHHHhhhhhhhhcc--cceeeeee-cCCHHHHHHH
Confidence 8999888888887777763 111 12345566 8999988777
No 234
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.05 E-value=2.3e-05 Score=70.06 Aligned_cols=95 Identities=21% Similarity=0.328 Sum_probs=58.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc---------chh-----------HHHH-----HHHHHHH---HhCCCc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT---------LGS-----------WQKC-----VSVMKAA---LDSGLS 325 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~---------~~~-----------~~~~-----~~~~~~~---l~~g~~ 325 (369)
+|++.|++||||||+++.|++.+++.++.... ++. .+.. .+...++ ++.+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~~~~~~~ 80 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEHLSTGQG 80 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccccccccccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 47899999999999999999877665554431 110 0100 1111222 347889
Q ss_pred EEEeCCCCCHH---------------HHHHH---HH-HHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 326 VVVDNTNPDKE---------------SRHRY---IE-AAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 326 vIiD~tn~~~~---------------~r~~~---~~-la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
||+|-...+.. ....+ .. +......+-.++++++|.+++++|.
T Consensus 81 vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri 142 (193)
T cd01673 81 VILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRI 142 (193)
T ss_pred eEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHH
Confidence 99997543211 11112 22 2222345778999999999999984
No 235
>KOG3347|consensus
Probab=98.04 E-value=1.1e-05 Score=68.56 Aligned_cols=84 Identities=15% Similarity=0.266 Sum_probs=57.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-h------h-----------HHHHHHHHHHHHhCCCcEEEeCCCCC
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-G------S-----------WQKCVSVMKAALDSGLSVVVDNTNPD 334 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~------~-----------~~~~~~~~~~~l~~g~~vIiD~tn~~ 334 (369)
+-|+++|-||+||||++.++++..+..+|+..++ + . -++..+.+...+..| ..|||.-.-+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~G-g~IVDyHgCd 86 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEG-GNIVDYHGCD 86 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcC-CcEEeecccC
Confidence 3589999999999999999999999999986554 2 1 145567777777776 4666632211
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 335 KESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 335 ~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
- .-.+|.. .+|++.||.++...|
T Consensus 87 ~-Fperwfd---------lVvVLr~~~s~LY~R 109 (176)
T KOG3347|consen 87 F-FPERWFD---------LVVVLRTPNSVLYDR 109 (176)
T ss_pred c-cchhhee---------EEEEEecCchHHHHH
Confidence 0 0122332 477888888877766
No 236
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.04 E-value=3.1e-05 Score=74.63 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=33.6
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
++.+|+++||+|||||++|..|++.++..+|+.|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 567999999999999999999999999999999985
No 237
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.02 E-value=1.9e-05 Score=71.53 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=30.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
.+|.++|.+||||||+++.|.. .|+.+|+.|.+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i 34 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQV 34 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHH
Confidence 4789999999999999999997 79999999986
No 238
>PTZ00301 uridine kinase; Provisional
Probab=97.98 E-value=3e-05 Score=70.78 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=27.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTL 306 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~ 306 (369)
.+|-+.|+|||||||+|+.|.+.+ .+.+++.|.+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y 44 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY 44 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence 688999999999999999887653 1347777776
No 239
>KOG1615|consensus
Probab=97.98 E-value=1e-05 Score=71.38 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=57.5
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEec------------------CCC
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVAT------------------QYD 116 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~------------------~~~ 116 (369)
+-||+++....|+++|.+++++|- -|...++.+..+||||+.-+++. -.+
T Consensus 89 lT~Gi~eLv~~L~~~~~~v~liSG------------GF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsd 156 (227)
T KOG1615|consen 89 LTPGIRELVSRLHARGTQVYLISG------------GFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSD 156 (227)
T ss_pred cCCCHHHHHHHHHHcCCeEEEEcC------------ChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCcccc
Confidence 579999999999999999999997 37888899999999986322221 013
Q ss_pred CCCCCchhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598 117 RYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAA 151 (369)
Q Consensus 117 ~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~ 151 (369)
.-+|+ ..+..+.+ +.+.+.++||||-+
T Consensus 157 sggKa--~~i~~lrk------~~~~~~~~mvGDGa 183 (227)
T KOG1615|consen 157 SGGKA--EVIALLRK------NYNYKTIVMVGDGA 183 (227)
T ss_pred CCccH--HHHHHHHh------CCChheeEEecCCc
Confidence 33563 44444444 46778999999999
No 240
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.97 E-value=4.2e-05 Score=69.55 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=30.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCC---cEEEeCCcc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLN---YTTVNRDTL 306 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~---~~~i~~D~~ 306 (369)
..+|-+.|.+||||||+|+.|.+.++ ...|+.|++
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~Y 45 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDY 45 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccc
Confidence 46888999999999999999999875 458899987
No 241
>PLN02165 adenylate isopentenyltransferase
Probab=97.96 E-value=5.5e-05 Score=73.25 Aligned_cols=35 Identities=29% Similarity=0.545 Sum_probs=32.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
..+|+|+||+|||||++|..|++.++..+|+.|.+
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 35899999999999999999999999999999976
No 242
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.96 E-value=3.7e-05 Score=68.04 Aligned_cols=90 Identities=18% Similarity=0.311 Sum_probs=58.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCC---------------------cEEEeCCcchh-----------------HHHH
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLN---------------------YTTVNRDTLGS-----------------WQKC 312 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~---------------------~~~i~~D~~~~-----------------~~~~ 312 (369)
+..+++|+||+|+||||+.+.|.+..+ +.+++.+.+.. |-..
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT~ 82 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTS 82 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccCc
Confidence 457999999999999999999987652 23333333311 2334
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHH
Q psy4598 313 VSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNIS-KEHAKHN 367 (369)
Q Consensus 313 ~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~-~e~~~~R 367 (369)
...+...++.|..||+|-... . .+.+-+... +++.|++.+| .+++.+|
T Consensus 83 ~~~ve~~~~~G~~vildId~q---G---a~qvk~~~p-~~v~IFi~pPs~eeL~~R 131 (191)
T COG0194 83 REPVEQALAEGKDVILDIDVQ---G---ALQVKKKMP-NAVSIFILPPSLEELERR 131 (191)
T ss_pred HHHHHHHHhcCCeEEEEEehH---H---HHHHHHhCC-CeEEEEEcCCCHHHHHHH
Confidence 567788899999999986542 1 122222233 6777777766 4666655
No 243
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.96 E-value=2.6e-05 Score=66.20 Aligned_cols=83 Identities=14% Similarity=0.314 Sum_probs=53.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCc---EEE--------------------eCCcchh-----------------HHHHH
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNY---TTV--------------------NRDTLGS-----------------WQKCV 313 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~---~~i--------------------~~D~~~~-----------------~~~~~ 313 (369)
+|+|+||+||||||+++.|++.++. ..+ +.+.+.. |....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence 4789999999999999999987431 111 1111100 11234
Q ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHH
Q psy4598 314 SVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEH 363 (369)
Q Consensus 314 ~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~ 363 (369)
+.+.+.++.|+.+|+|... ..... +++......+|++.+|+++
T Consensus 81 ~~i~~~~~~g~~~il~~~~---~~~~~----l~~~~~~~~~I~i~~~~~~ 123 (137)
T cd00071 81 AAVEEALAEGKIVILEIDV---QGARQ----VKKSYPDAVSIFILPPDYV 123 (137)
T ss_pred HHHHHHHhCCCeEEEEecH---HHHHH----HHHcCCCeEEEEEECCCeE
Confidence 5577788899999999643 33333 3446678889999988543
No 244
>PLN02422 dephospho-CoA kinase
Probab=97.94 E-value=3.7e-05 Score=71.07 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=30.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
.+|.++|.+||||||+++.|. .+|+.+++.|.+
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~ 34 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKV 34 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHH
Confidence 478999999999999999999 579999999997
No 245
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.94 E-value=3.3e-05 Score=68.61 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG 307 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~ 307 (369)
+|.++|+|||||||+|+.|++.+ ++.+|+.|.+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 47899999999999999999874 57889988873
No 246
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.92 E-value=4.3e-05 Score=78.28 Aligned_cols=35 Identities=20% Similarity=0.405 Sum_probs=32.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
+.+|.+.|+|||||||+++.|++.+++.+++.|.+
T Consensus 284 ~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~ 318 (512)
T PRK13477 284 QPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAM 318 (512)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCce
Confidence 46899999999999999999999999999998876
No 247
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=97.91 E-value=4.2e-05 Score=65.42 Aligned_cols=118 Identities=22% Similarity=0.284 Sum_probs=83.6
Q ss_pred CCceEEEEecCCceeecCCCCCC-CCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598 23 NSAKIASFDLDGTLITTKSGKVF-PVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK 101 (369)
Q Consensus 23 ~~~k~~~fDlDgTLi~~~sg~~~-~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~ 101 (369)
.+.|.++||.||||.+- +.| ..+-+..+.+.--=--.|+.|.+.|.++.|+|-.. + ..++.-.+
T Consensus 6 ~~IkLli~DVDGvLTDG---~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi~vAIITGr~-------s-----~ive~Ra~ 70 (170)
T COG1778 6 KNIKLLILDVDGVLTDG---KLYYDENGEEIKAFNVRDGHGIKLLLKSGIKVAIITGRD-------S-----PIVEKRAK 70 (170)
T ss_pred hhceEEEEeccceeecC---eEEEcCCCceeeeeeccCcHHHHHHHHcCCeEEEEeCCC-------C-----HHHHHHHH
Confidence 35689999999999753 444 44444554333212235888999999999999632 1 12344568
Q ss_pred HcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598 102 SLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 102 ~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~ 181 (369)
.||+.. +|.+ .+-+-..++.+++++ +++++++.||||.. .|+-.=.++|+.|.
T Consensus 71 ~LGI~~-~~qG------~~dK~~a~~~L~~~~----~l~~e~~ayiGDD~----------------~Dlpvm~~vGls~a 123 (170)
T COG1778 71 DLGIKH-LYQG------ISDKLAAFEELLKKL----NLDPEEVAYVGDDL----------------VDLPVMEKVGLSVA 123 (170)
T ss_pred HcCCce-eeec------hHhHHHHHHHHHHHh----CCCHHHhhhhcCcc----------------ccHHHHHHcCCccc
Confidence 888752 2222 233467889999986 79999999999999 89999999999985
Q ss_pred C
Q psy4598 182 T 182 (369)
Q Consensus 182 ~ 182 (369)
-
T Consensus 124 ~ 124 (170)
T COG1778 124 V 124 (170)
T ss_pred c
Confidence 3
No 248
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.89 E-value=8.9e-05 Score=66.00 Aligned_cols=89 Identities=12% Similarity=0.322 Sum_probs=56.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCC--cEEE---------------------eCCcchh-----------------HHH
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLN--YTTV---------------------NRDTLGS-----------------WQK 311 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~--~~~i---------------------~~D~~~~-----------------~~~ 311 (369)
.++|+++|||||||+|+++.|.+... .... +.+.+.. |..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 36899999999999999999988741 2111 1111110 112
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEe-CCHHHHHHH
Q psy4598 312 CVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMN-ISKEHAKHN 367 (369)
Q Consensus 312 ~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~-~~~e~~~~R 367 (369)
....+.+.++.|+.+|+|... .....+. +......+|++. ++.+++.+|
T Consensus 82 ~~~~i~~~~~~~~~~ild~~~---~~~~~l~----~~~~~~~vIfi~~~s~~~l~~r 131 (184)
T smart00072 82 SKETIRQVAEQGKHCLLDIDP---QGVKQLR----KAQLYPIVIFIAPPSSEELERR 131 (184)
T ss_pred CHHHHHHHHHcCCeEEEEECH---HHHHHHH----HhCCCcEEEEEeCcCHHHHHHH
Confidence 234567788889999999763 2233332 234455688887 555666666
No 249
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=97.89 E-value=3.9e-05 Score=69.27 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=28.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
+|.++|.+||||||+++.+.+ .+..+++.|.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i 32 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRL 32 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchH
Confidence 478999999999999998865 68999999997
No 250
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.87 E-value=0.00013 Score=63.18 Aligned_cols=123 Identities=18% Similarity=0.363 Sum_probs=76.2
Q ss_pred EEEEecCCceeecC-CCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc--
Q psy4598 27 IASFDLDGTLITTK-SGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL-- 103 (369)
Q Consensus 27 ~~~fDlDgTLi~~~-sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l-- 103 (369)
++++|+||||..+. -|...+..-.|| .+|||.+..+.++++||+++-+|..+ ..........|..+
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~~~G~d~--~h~g~~~l~~~i~~~GY~ilYlTaRp---------~~qa~~Tr~~L~~~~q 69 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILPILGKDW--THPGAAELYRKIADNGYKILYLTARP---------IGQANRTRSWLAQHQQ 69 (157)
T ss_pred CEEEeccCCcCccchhhhhhhccCchh--hhhcHHHHHHHHHHCCeEEEEECcCc---------HHHHHHHHHHHHHHHh
Confidence 57899999998764 233344445565 59999999999999999999999843 12233344445544
Q ss_pred ---CCCeE-EEEecC--------CCCCCCCchhHHHHHH-HHhcCCccccCCccEE--eeCccccccccCCCCCCCCCcc
Q psy4598 104 ---NVPVQ-MFVATQ--------YDRYRKPVPGMWEYLS-QEKNGDLAIDISQSFY--AGDAAGRAANWAPKKKKDFACT 168 (369)
Q Consensus 104 ---~i~~~-~~~~~~--------~~~~rKP~~gm~~~~~-~~~~~~~~i~~~~s~~--VGD~~gr~~~~~~~~~~d~s~~ 168 (369)
++|-- ++.++. +...+ +|.-|...+ +.+.. +-.....-|+ .|.+. +
T Consensus 70 ~~~~lP~Gpv~~sP~~l~~al~rEvi~~--~p~~fK~~~L~~l~~-~f~~~~~pf~agfGN~~----------------t 130 (157)
T PF08235_consen 70 QGHNLPDGPVLLSPDSLFSALHREVISK--DPEEFKIACLRDLRA-LFPPDGNPFYAGFGNRS----------------T 130 (157)
T ss_pred CCccCCCCCEEECCcchhhhhhcccccc--ChHHHHHHHHHHHHH-hcCCCCCeEEEecCCcH----------------H
Confidence 66643 444432 23233 444444332 22100 0011244455 56776 8
Q ss_pred cHHHHHhCCCC
Q psy4598 169 DHLFAFNLNLA 179 (369)
Q Consensus 169 D~~~A~n~Gi~ 179 (369)
|+.+=.++||+
T Consensus 131 Dv~aY~~vGip 141 (157)
T PF08235_consen 131 DVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHcCCC
Confidence 99999999998
No 251
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.87 E-value=5.7e-05 Score=68.57 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=33.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
.|..|-|+|.+||||||+++.|.+.+++.+++.|.+
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i 40 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTI 40 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHH
Confidence 356899999999999999999999889999999987
No 252
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.85 E-value=0.00012 Score=66.22 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=32.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
|+.+|-++|.|||||||+++.+.+ .|+.++++|.+
T Consensus 1 ~~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v 35 (201)
T COG0237 1 MMLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDV 35 (201)
T ss_pred CceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHH
Confidence 467899999999999999999999 99999999987
No 253
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.84 E-value=4.4e-05 Score=63.12 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=38.1
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCcEE--EeCCcch------hHHHHHHHHHHHHhCC--CcEEEeCC
Q psy4598 275 LIMIGSQGSGKSSFVSTYLKPLNYTT--VNRDTLG------SWQKCVSVMKAALDSG--LSVVVDNT 331 (369)
Q Consensus 275 Ill~G~pGSGKSTla~~L~~~~~~~~--i~~D~~~------~~~~~~~~~~~~l~~g--~~vIiD~t 331 (369)
|+|.|+||+||||+++.+++.++..+ ++...+. ..+.+.....++-..+ ..+++|+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~ 67 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEI 67 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETG
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence 68999999999999999999987544 5554443 2333444444444443 35567764
No 254
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.84 E-value=4.3e-05 Score=68.63 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC---------cEEEeCCcc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLN---------YTTVNRDTL 306 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~---------~~~i~~D~~ 306 (369)
+|-++|+|||||||+|+.|+..++ ...++.|.+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~ 42 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDF 42 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeeccc
Confidence 588999999999999999998764 456677765
No 255
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.84 E-value=7.9e-05 Score=67.82 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=30.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
+.+|.++|.+||||||+++.|.. .++.+++.|.+
T Consensus 5 ~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i 38 (208)
T PRK14731 5 PFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRV 38 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHH
Confidence 46789999999999999999996 78899998865
No 256
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.83 E-value=7.9e-05 Score=66.93 Aligned_cols=33 Identities=21% Similarity=0.507 Sum_probs=28.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC---CcEEEeCCcc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPL---NYTTVNRDTL 306 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~---~~~~i~~D~~ 306 (369)
+|.|+|++||||||+++.|...+ .+.+++.|.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~ 36 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSY 36 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 47899999999999999998875 4778888875
No 257
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.82 E-value=0.00021 Score=65.52 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNY 298 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~ 298 (369)
+|++-|.-||||||+++.|++.++.
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~ 25 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGM 25 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999987654
No 258
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.76 E-value=7e-05 Score=68.82 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTL 306 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~ 306 (369)
+|-+.|++||||||+++.|+..+ .+.+|+.|.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 46789999999999999998765 3577888876
No 259
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.75 E-value=9e-05 Score=66.87 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=31.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG 307 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~ 307 (369)
|.+|+|+||+|+||||.+.+|+.++ ...+++.|.+|
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 6799999999999999999998753 57899999985
No 260
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=97.75 E-value=0.00025 Score=66.10 Aligned_cols=45 Identities=20% Similarity=0.107 Sum_probs=36.7
Q ss_pred CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598 118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT 182 (369)
Q Consensus 118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~ 182 (369)
.+.++...++++++.+ ++++++++++||+. .|+.+..+++...+.
T Consensus 164 ~~~~K~~al~~l~~~~----~i~~~~~i~~GD~~----------------ND~~ml~~~~~~~va 208 (249)
T TIGR01485 164 QGSGKGQALQYLLQKL----AMEPSQTLVCGDSG----------------NDIELFEIGSVRGVI 208 (249)
T ss_pred CCCChHHHHHHHHHHc----CCCccCEEEEECCh----------------hHHHHHHccCCcEEE
Confidence 3567788888888885 68899999999999 899999986655443
No 261
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.73 E-value=0.00014 Score=65.57 Aligned_cols=97 Identities=18% Similarity=0.237 Sum_probs=61.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEE----eCCcch--------hHH---------HHHHHHHHHHhC-----CCc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTV----NRDTLG--------SWQ---------KCVSVMKAALDS-----GLS 325 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i----~~D~~~--------~~~---------~~~~~~~~~l~~-----g~~ 325 (369)
..+|++.|+-|+||||+|+.|+++++...+ .-+.+- .|. .-.+....+.+. +++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~d~~~yaf~~QiyFL~~Rfk~~k~~~~~~~~i~drs 83 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYEDPERYAFLLQIYFLLNRFKKIKKALSDKNNILDRS 83 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhcccccccCcc
Confidence 368999999999999999999999874333 233321 110 011222233333 334
Q ss_pred EEEeC----------CCCCHHHHHHHHHHHH--------hcCCeEEEEEEeCCHHHHHHHc
Q psy4598 326 VVVDN----------TNPDKESRHRYIEAAK--------QHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 326 vIiD~----------tn~~~~~r~~~~~la~--------~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
|+-|. .+.++..-..+..+.. ..+.|=.+|+++|+.++.++|-
T Consensus 84 I~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI 144 (216)
T COG1428 84 IFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRI 144 (216)
T ss_pred hhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHH
Confidence 55554 3445666655555544 2357889999999999988873
No 262
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.71 E-value=0.00021 Score=63.43 Aligned_cols=89 Identities=20% Similarity=0.415 Sum_probs=56.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCC-----------------------cEEEeCCcchh-----------------HHH
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLN-----------------------YTTVNRDTLGS-----------------WQK 311 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~-----------------------~~~i~~D~~~~-----------------~~~ 311 (369)
+++|+|+||+||||||+++.|.+..+ +.+++.+.+.. |-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt 81 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT 81 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence 46799999999999999999987642 12222222210 111
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHH
Q psy4598 312 CVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNIS-KEHAKHN 367 (369)
Q Consensus 312 ~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~-~e~~~~R 367 (369)
....+...++.|+.+|+|.. ...-..+ +..+....+|++.+| .+.+.+|
T Consensus 82 ~~~~i~~~~~~gk~~il~~~---~~g~~~L----~~~~~~~~~IfI~~~s~~~l~~~ 131 (183)
T PF00625_consen 82 SKSAIDKVLEEGKHCILDVD---PEGVKQL----KKAGFNPIVIFIKPPSPEVLKRR 131 (183)
T ss_dssp EHHHHHHHHHTTTEEEEEET---HHHHHHH----HHCTTTEEEEEEEESSHHHHHHH
T ss_pred ccchhhHhhhcCCcEEEEcc---HHHHHHH----HhcccCceEEEEEccchHHHHHH
Confidence 24667788899999999965 2333332 334777778888655 5666655
No 263
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.71 E-value=0.00022 Score=65.86 Aligned_cols=88 Identities=16% Similarity=0.352 Sum_probs=61.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCc-EEEeCCcchh---------------------HHH-----------------
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNY-TTVNRDTLGS---------------------WQK----------------- 311 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~-~~i~~D~~~~---------------------~~~----------------- 311 (369)
.|.+|++.|+||.||||+|..++.+++. ..|++|.++. |+.
T Consensus 88 ~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~dq 167 (299)
T COG2074 88 RPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFEDQ 167 (299)
T ss_pred CCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHHH
Confidence 3689999999999999999999999986 4678888741 221
Q ss_pred -------HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHH
Q psy4598 312 -------CVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEH 363 (369)
Q Consensus 312 -------~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~ 363 (369)
+...+..++..|.++||++...-+...+.- .. +..+..+++.+++|.
T Consensus 168 a~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~----~~-~~n~~~~~l~i~dee 221 (299)
T COG2074 168 ASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEE----AL-GNNVFMFMLYIADEE 221 (299)
T ss_pred hHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHh----hh-ccceEEEEEEeCCHH
Confidence 134457788999999999998765443321 11 344555555555443
No 264
>PLN02772 guanylate kinase
Probab=97.71 E-value=0.00013 Score=71.96 Aligned_cols=114 Identities=16% Similarity=0.234 Sum_probs=69.9
Q ss_pred cccccccccccchhhhhhhcccc-ccEEEEEEcCCCCcHHHHHHHHhccCC-----------------------cEEEeC
Q psy4598 248 NYTTVNRDTLGSWQKCVSVMKAA-LDSVLIMIGSQGSGKSSFVSTYLKPLN-----------------------YTTVNR 303 (369)
Q Consensus 248 ~~~~i~r~~~~~~~~~~~~~~~~-~~~lIll~G~pGSGKSTla~~L~~~~~-----------------------~~~i~~ 303 (369)
-|++.++..+......+....++ ..++|+|+||+|+||||+.+.|.+... +.+++.
T Consensus 110 ~~~~~~~~~~~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~ 189 (398)
T PLN02772 110 PFVREQKKLLGTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTER 189 (398)
T ss_pred HHHHhhcccccceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCH
Confidence 45666666666666566655555 557999999999999999999977531 111111
Q ss_pred Ccch-----------------hHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHH
Q psy4598 304 DTLG-----------------SWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKH 366 (369)
Q Consensus 304 D~~~-----------------~~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~ 366 (369)
+.+. .|-.-.+.+...+++|+.+|+|- +......+.+.. --.+.++.+..+.+++.+
T Consensus 190 eeFe~~i~~g~FlE~~e~~Gn~YGTsk~~V~~vl~~Gk~vILdL---D~qGar~Lr~~~---l~~v~IFI~PPSlEeLe~ 263 (398)
T PLN02772 190 SVMEKEIKDGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDI---DVQGARSVRASS---LEAIFIFICPPSMEELEK 263 (398)
T ss_pred HHHHHHHHhCccceeeeecCccccccHHHHHHHHHhCCcEEEeC---CHHHHHHHHHhc---CCeEEEEEeCCCHHHHHH
Confidence 2221 02223466677889999999994 334455544321 123444444556777776
Q ss_pred H
Q psy4598 367 N 367 (369)
Q Consensus 367 R 367 (369)
|
T Consensus 264 R 264 (398)
T PLN02772 264 R 264 (398)
T ss_pred H
Confidence 6
No 265
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.71 E-value=0.00011 Score=69.50 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=45.9
Q ss_pred CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL 103 (369)
Q Consensus 24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l 103 (369)
+.|++++||||||+.... ...|.+.++|++|+++|++++|+|+.+ ...+..+++.+
T Consensus 3 ~~kli~~DlDGTLl~~~~------------~~~~~~~~ai~~l~~~Gi~~~iaTgR~------------~~~~~~~~~~l 58 (273)
T PRK00192 3 MKLLVFTDLDGTLLDHHT------------YSYEPAKPALKALKEKGIPVIPCTSKT------------AAEVEVLRKEL 58 (273)
T ss_pred cceEEEEcCcccCcCCCC------------cCcHHHHHHHHHHHHCCCEEEEEcCCC------------HHHHHHHHHHc
Confidence 468999999999996431 157889999999999999999999953 12345567777
Q ss_pred CCC
Q psy4598 104 NVP 106 (369)
Q Consensus 104 ~i~ 106 (369)
++.
T Consensus 59 ~l~ 61 (273)
T PRK00192 59 GLE 61 (273)
T ss_pred CCC
Confidence 763
No 266
>KOG0234|consensus
Probab=97.70 E-value=0.00013 Score=72.22 Aligned_cols=97 Identities=23% Similarity=0.348 Sum_probs=71.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-----h----------------------hHHHHHHH----HHHHH
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-----G----------------------SWQKCVSV----MKAAL 320 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-----~----------------------~~~~~~~~----~~~~l 320 (369)
+.+|+|+|+|++|||.++.++.+.++|.-++.-.+ + ...++... ....+
T Consensus 28 ~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s~~ff~p~n~~~~~lr~~~a~~~l~D~~~~l 107 (438)
T KOG0234|consen 28 KLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDSEPFFLPDNAEASKLRKQLALLALNDLLHFL 107 (438)
T ss_pred ceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhcccccccccccCChhhhhhhHHHHHHHhhhHHHHh
Confidence 57999999999999999999998765433332222 0 01122221 22222
Q ss_pred --hCCCcEEEeCCCCCHHHHHHHHHHHH-hcCCeEEEEEEeCCHHHHHHHc
Q psy4598 321 --DSGLSVVVDNTNPDKESRHRYIEAAK-QHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 321 --~~g~~vIiD~tn~~~~~r~~~~~la~-~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
..|...|.|+||.++..|..+..+++ +.++.+.++.-.|+++..+.+|
T Consensus 108 ~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~N 158 (438)
T KOG0234|consen 108 IKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNN 158 (438)
T ss_pred hccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhh
Confidence 45789999999999999999999996 8899999999989888777665
No 267
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=97.70 E-value=0.00037 Score=64.61 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=61.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc--hhHHHHHHHHHHHH--hCCCcEEEeCCCC-CHHHHHHHHHHHHh
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL--GSWQKCVSVMKAAL--DSGLSVVVDNTNP-DKESRHRYIEAAKQ 347 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~--~~~~~~~~~~~~~l--~~g~~vIiD~tn~-~~~~r~~~~~la~~ 347 (369)
.+|+++|.+|||||+-.+.|.. +|+..+ |.+ .-..++.+.+...- .....|++|--+. ........+...++
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lED-lGyycv--DNLPp~Llp~~~~~~~~~~~~~~kvAv~iDiRs~~~~~~l~~~l~~l~~ 78 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLED-LGYYCV--DNLPPQLLPKLADLMLTLESRITKVAVVIDVRSREFFGDLEEVLDELKD 78 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHHh-cCeeee--cCCCHHHHHHHHHHHhhcccCCceEEEEEecccchhHHHHHHHHHHHHh
Confidence 5899999999999998888754 455444 444 22334444333111 1234688897664 23333455555666
Q ss_pred c-CCeEEEEEEeCCHHHHHHHc
Q psy4598 348 H-GVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 348 ~-~~~v~~v~l~~~~e~~~~Rn 368 (369)
. ++.+.+++++++.++...|-
T Consensus 79 ~~~~~~~iLFLeA~~~~Lv~RY 100 (286)
T COG1660 79 NGDIDPRVLFLEADDETLVRRY 100 (286)
T ss_pred cCCCCceEEEEECchhHHHHHH
Confidence 6 47799999999999998884
No 268
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=97.69 E-value=6.1e-05 Score=67.03 Aligned_cols=32 Identities=25% Similarity=0.535 Sum_probs=29.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
+|-++|..||||||+++.|.+ +|+.+++.|.+
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i 33 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEI 33 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH-CCCCEECccHH
Confidence 688999999999999999999 99999999987
No 269
>PRK13974 thymidylate kinase; Provisional
Probab=97.69 E-value=0.00032 Score=63.94 Aligned_cols=96 Identities=22% Similarity=0.238 Sum_probs=56.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCc---------EEEeC---Cc-c----h------------------------hHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNY---------TTVNR---DT-L----G------------------------SWQK 311 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~---------~~i~~---D~-~----~------------------------~~~~ 311 (369)
.+|++.|++||||||.++.|++.+.. ++... +. + + .++.
T Consensus 4 ~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~~ 83 (212)
T PRK13974 4 KFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQH 83 (212)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999976521 11110 10 0 0 0112
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCC------------HHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 312 CVSVMKAALDSGLSVVVDNTNPD------------KESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 312 ~~~~~~~~l~~g~~vIiD~tn~~------------~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
+......++..|..||.|-...+ .+.-..+...+...-.+-.++++++|.+++.+|.
T Consensus 84 ~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~ 152 (212)
T PRK13974 84 VSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRR 152 (212)
T ss_pred HHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHH
Confidence 22234556778887777654221 1122233322222124667999999999999883
No 270
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.69 E-value=0.00032 Score=64.70 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=29.5
Q ss_pred ccccEEEEEEcCCCCcHHHHHHHHhccCC-----cEE-EeCCcc
Q psy4598 269 AALDSVLIMIGSQGSGKSSFVSTYLKPLN-----YTT-VNRDTL 306 (369)
Q Consensus 269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~-----~~~-i~~D~~ 306 (369)
...+.+|.+.|++||||||+++.|+..+. ..+ ++.|.+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 45578999999999999999999987642 233 666664
No 271
>PLN02840 tRNA dimethylallyltransferase
Probab=97.68 E-value=0.00011 Score=73.34 Aligned_cols=35 Identities=29% Similarity=0.523 Sum_probs=32.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
..+|++.||+||||||++..|++.++..+|+.|.+
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~ 55 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLNGEIISADSV 55 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence 46899999999999999999999999999999985
No 272
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=97.68 E-value=0.00013 Score=76.26 Aligned_cols=104 Identities=15% Similarity=0.164 Sum_probs=73.5
Q ss_pred ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC
Q psy4598 25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN 104 (369)
Q Consensus 25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~ 104 (369)
..++.++.||+++.--. ..| .++|++.+.|++|++.|++++|+||.. +...+.+++.+|
T Consensus 385 ~~~~~~~~~~~~~g~~~-------~~d--~l~~~a~e~i~~Lk~~Gi~v~ilSgd~------------~~~a~~ia~~lg 443 (562)
T TIGR01511 385 STSVLVAVNGELAGVFA-------LED--QLRPEAKEVIQALKRRGIEPVMLTGDN------------RKTAKAVAKELG 443 (562)
T ss_pred CEEEEEEECCEEEEEEE-------ecc--cccHHHHHHHHHHHHcCCeEEEEcCCC------------HHHHHHHHHHcC
Confidence 35677888888764310 111 269999999999999999999999942 345677889999
Q ss_pred CCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCC
Q psy4598 105 VPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLA 179 (369)
Q Consensus 105 i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~ 179 (369)
++ +++. ...++++.+++.+. -+.++++||||.. .|+.+++++|+.
T Consensus 444 i~---~~~~---~~p~~K~~~v~~l~--------~~~~~v~~VGDg~----------------nD~~al~~A~vg 488 (562)
T TIGR01511 444 IN---VRAE---VLPDDKAALIKELQ--------EKGRVVAMVGDGI----------------NDAPALAQADVG 488 (562)
T ss_pred Cc---EEcc---CChHHHHHHHHHHH--------HcCCEEEEEeCCC----------------ccHHHHhhCCEE
Confidence 85 2221 11223344444433 2457899999999 899999999985
No 273
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.63 E-value=0.0004 Score=57.69 Aligned_cols=110 Identities=26% Similarity=0.263 Sum_probs=72.5
Q ss_pred EEEEecCCceeecCCCCC----CCC----Ccccc----ccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHH
Q psy4598 27 IASFDLDGTLITTKSGKV----FPV----DTHDW----KLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQA 94 (369)
Q Consensus 27 ~~~fDlDgTLi~~~sg~~----~~~----~~~d~----~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~ 94 (369)
++.||+||||.+.-.... |.. ...|- ..++|.|.+.|+.++..||-+..+|=+ +..
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN------------~~~ 69 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWN------------FED 69 (164)
T ss_pred cEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecC------------chH
Confidence 578999999987532111 111 11111 237999999999999999999999941 344
Q ss_pred HHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHHhc--CCccccCCccEEeeCccc
Q psy4598 95 KAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQEKN--GDLAIDISQSFYAGDAAG 152 (369)
Q Consensus 95 ~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~~~--~~~~i~~~~s~~VGD~~g 152 (369)
+.-+.|..+++ +|...+.- ...+| -.|+-+++...| .+..+.|++.+|+.|+.+
T Consensus 70 kA~~aLral~~~~yFhy~Vie--PhP~K--~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~i 127 (164)
T COG4996 70 KAIKALRALDLLQYFHYIVIE--PHPYK--FLMLSQLLREINTERNQKIKPSEIVYLDDRRI 127 (164)
T ss_pred HHHHHHHHhchhhhEEEEEec--CCChh--HHHHHHHHHHHHHhhccccCcceEEEEecccc
Confidence 45566777776 47755432 11222 347777776554 235788999999999975
No 274
>PLN02348 phosphoribulokinase
Probab=97.62 E-value=0.00019 Score=70.86 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=31.5
Q ss_pred cccEEEEEEcCCCCcHHHHHHHHhccCC--------------------cEEEeCCcc
Q psy4598 270 ALDSVLIMIGSQGSGKSSFVSTYLKPLN--------------------YTTVNRDTL 306 (369)
Q Consensus 270 ~~~~lIll~G~pGSGKSTla~~L~~~~~--------------------~~~i~~D~~ 306 (369)
..+.+|-|.|+|||||||+++.|.+.++ +.+|+.|++
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDY 103 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDY 103 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccc
Confidence 4567899999999999999999998763 367888887
No 275
>PLN02748 tRNA dimethylallyltransferase
Probab=97.62 E-value=0.00012 Score=74.09 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=33.6
Q ss_pred cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
..+.+|+++|++|||||+||..|++.++..+|+.|.+
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Dsm 56 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSM 56 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchh
Confidence 3456899999999999999999999999999999975
No 276
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.60 E-value=0.00013 Score=63.73 Aligned_cols=81 Identities=17% Similarity=0.186 Sum_probs=49.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-h-----------------HHHHHHHHHHHHhCCCcEEEeCCCCC
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-S-----------------WQKCVSVMKAALDSGLSVVVDNTNPD 334 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-~-----------------~~~~~~~~~~~l~~g~~vIiD~tn~~ 334 (369)
++|.++|.||+||||+++.|. .+++.+++.-.+. . .+.........+ ...+.|+|.-.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~-~~~~~Ivd~H~-- 76 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELL-REGSGIVDSHL-- 76 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHh-ccCCeEeechh--
Confidence 368999999999999999999 7776666654431 0 122222223333 34467777432
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 335 KESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 335 ~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
..+. .-.=.+|.+.++++++.+|
T Consensus 77 -------~hl~---~~~dlVvVLR~~p~~L~~R 99 (180)
T COG1936 77 -------SHLL---PDCDLVVVLRADPEVLYER 99 (180)
T ss_pred -------hhcC---CCCCEEEEEcCCHHHHHHH
Confidence 1111 1112477888888887776
No 277
>PRK04195 replication factor C large subunit; Provisional
Probab=97.57 E-value=0.00041 Score=71.16 Aligned_cols=85 Identities=15% Similarity=0.201 Sum_probs=53.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEE--EeCCcchhHHHHHHHHHHHHh-------CCCcEEEeCCC-CCH----HH
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTT--VNRDTLGSWQKCVSVMKAALD-------SGLSVVVDNTN-PDK----ES 337 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~--i~~D~~~~~~~~~~~~~~~l~-------~g~~vIiD~tn-~~~----~~ 337 (369)
+..++|.||||+||||+++.+++.+++.+ ++..+.+....+...+..+.. ....||||... +.. ..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~ 118 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGG 118 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhH
Confidence 57899999999999999999999886544 444444443333333333321 34467777542 221 33
Q ss_pred HHHHHHHHHhcCCeEEEEE
Q psy4598 338 RHRYIEAAKQHGVRCIAVH 356 (369)
Q Consensus 338 r~~~~~la~~~~~~v~~v~ 356 (369)
...++++.+..+.+++++.
T Consensus 119 ~~aL~~~l~~~~~~iIli~ 137 (482)
T PRK04195 119 ARAILELIKKAKQPIILTA 137 (482)
T ss_pred HHHHHHHHHcCCCCEEEec
Confidence 4566677776666665543
No 278
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=97.56 E-value=0.00024 Score=65.52 Aligned_cols=54 Identities=26% Similarity=0.335 Sum_probs=41.7
Q ss_pred EEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC
Q psy4598 27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV 105 (369)
Q Consensus 27 ~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i 105 (369)
+++|||||||+.... ..|...++|++|+++|++++++|+.+ . ..+..+++++|+
T Consensus 1 li~~DlDGTLl~~~~-------------~~~~~~~ai~~l~~~G~~~vi~TgR~--------~----~~~~~~~~~lg~ 54 (225)
T TIGR02461 1 VIFTDLDGTLLPPGY-------------EPGPAREALEELKDLGFPIVFVSSKT--------R----AEQEYYREELGV 54 (225)
T ss_pred CEEEeCCCCCcCCCC-------------CchHHHHHHHHHHHCCCEEEEEeCCC--------H----HHHHHHHHHcCC
Confidence 479999999996321 36779999999999999999999843 1 234556788886
No 279
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.55 E-value=0.00019 Score=68.43 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
+|+++||+|||||++|..|++.++..+|+.|.+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence 479999999999999999999999999999986
No 280
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.55 E-value=0.00028 Score=73.59 Aligned_cols=106 Identities=16% Similarity=0.184 Sum_probs=72.4
Q ss_pred ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCC-cEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598 25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDG-YKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL 103 (369)
Q Consensus 25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G-~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l 103 (369)
..++++..||++...-. .. ..++|++.+.|++|+++| ++++|+||.+ ....+.+++++
T Consensus 364 ~~~~~v~~~~~~~g~i~-------~~--d~~~~g~~e~l~~L~~~g~i~v~ivTgd~------------~~~a~~i~~~l 422 (556)
T TIGR01525 364 KTVVFVAVDGELLGVIA-------LR--DQLRPEAKEAIAALKRAGGIKLVMLTGDN------------RSAAEAVAAEL 422 (556)
T ss_pred cEEEEEEECCEEEEEEE-------ec--ccchHhHHHHHHHHHHcCCCeEEEEeCCC------------HHHHHHHHHHh
Confidence 35677888887764421 11 127999999999999999 9999999943 34567788999
Q ss_pred CCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598 104 NVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF 180 (369)
Q Consensus 104 ~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f 180 (369)
|+. -+++.- ..++++.++ +++ ...+++++||||.. .|+.+++++|+-.
T Consensus 423 gi~--~~f~~~---~p~~K~~~v----~~l----~~~~~~v~~vGDg~----------------nD~~al~~A~vgi 470 (556)
T TIGR01525 423 GID--EVHAEL---LPEDKLAIV----KEL----QEEGGVVAMVGDGI----------------NDAPALAAADVGI 470 (556)
T ss_pred CCC--eeeccC---CHHHHHHHH----HHH----HHcCCEEEEEECCh----------------hHHHHHhhCCEeE
Confidence 973 122110 112223333 332 22457999999999 8999999999654
No 281
>KOG1384|consensus
Probab=97.54 E-value=0.00061 Score=65.17 Aligned_cols=94 Identities=15% Similarity=0.304 Sum_probs=67.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-------------------------------------hHH-HH
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-------------------------------------SWQ-KC 312 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-------------------------------------~~~-~~ 312 (369)
..++|+++|+.|||||.||-.|+.+++..+|++|.+. .|+ .+
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a 85 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA 85 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence 3479999999999999999999999999999999872 122 23
Q ss_pred HHHHHHHHhCCC-cEEEeCCCCCHHHHHHHHHH----------------HHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 313 VSVMKAALDSGL-SVVVDNTNPDKESRHRYIEA----------------AKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 313 ~~~~~~~l~~g~-~vIiD~tn~~~~~r~~~~~l----------------a~~~~~~v~~v~l~~~~e~~~~R 367 (369)
.....+..+.|+ ++|+-++|..- ..+..- ..+..|.+.++|++++..+..+|
T Consensus 86 ~~aie~I~~rgk~PIv~GGs~~yi---~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~ 154 (348)
T KOG1384|consen 86 SRAIEEIHSRGKLPIVVGGSNSYL---QALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFER 154 (348)
T ss_pred HHHHHHHHhCCCCCEEeCCchhhH---HHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHH
Confidence 444555566666 67777777532 222211 11224789999999999887665
No 282
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.54 E-value=7.5e-05 Score=68.48 Aligned_cols=36 Identities=19% Similarity=0.470 Sum_probs=33.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
|+.+|.+.|++||||||+++.|++.+++.+++.+.+
T Consensus 1 ~~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~ 36 (217)
T TIGR00017 1 MAMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAM 36 (217)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchH
Confidence 457899999999999999999999999999999875
No 283
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=97.51 E-value=0.00024 Score=71.00 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=30.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
..|.|+|.+||||||+++.|++ +|+.+|+.|.+
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i 34 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVL 34 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHH
Confidence 4589999999999999999987 79999999987
No 284
>PRK15453 phosphoribulokinase; Provisional
Probab=97.51 E-value=0.00013 Score=68.97 Aligned_cols=41 Identities=20% Similarity=0.438 Sum_probs=34.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchhHHH
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGSWQK 311 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~~~~ 311 (369)
.+.+|.++|.|||||||+++++++.+ ++.+|+.|.+..|.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr 49 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTR 49 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccCh
Confidence 35789999999999999999998754 478999999876543
No 285
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.50 E-value=0.0008 Score=67.92 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=31.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG 307 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~ 307 (369)
.|.+|+|+|++||||||.+..|+..+ .+.+++.|.++
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 36789999999999999999998653 46788899875
No 286
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.50 E-value=0.0012 Score=57.82 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG 307 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~ 307 (369)
++++.|+|||||||++..++..+ .+.+++.|.++
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 67899999999999999887653 46788888764
No 287
>KOG2961|consensus
Probab=97.49 E-value=0.0008 Score=57.34 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=73.5
Q ss_pred CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHC-C-cEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDD-G-YKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK 101 (369)
Q Consensus 24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~-G-~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~ 101 (369)
..|++.||-|.+|.-+.+ ..= -|.-...+++++.. | ..|+|+||..|.. ..+...-+ ...+-.
T Consensus 42 ~ikavVlDKDNcit~P~~-------~~I----wp~~l~~ie~~~~vygek~i~v~SNsaG~~--~~D~d~s~--Ak~le~ 106 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAPYS-------LAI----WPPLLPSIERCKAVYGEKDIAVFSNSAGLT--EYDHDDSK--AKALEA 106 (190)
T ss_pred CceEEEEcCCCeeeCCcc-------ccc----CchhHHHHHHHHHHhCcccEEEEecCcCcc--ccCCchHH--HHHHHH
Confidence 579999999999975543 222 33444555666552 4 6799999976652 22322222 233346
Q ss_pred HcCCCeEEEEecCCCCCCCCchhHHHHHHHHh-cCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598 102 SLNVPVQMFVATQYDRYRKPVPGMWEYLSQEK-NGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF 180 (369)
Q Consensus 102 ~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~-~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f 180 (369)
+.|||+- ..++-+|+.-++..+.+ +...-..+++.+||||+. .+||..|...|--.
T Consensus 107 k~gIpVl--------RHs~kKP~ct~E~~~y~~~Nshv~~~se~~~vGDRl---------------fTDI~~aN~mGs~g 163 (190)
T KOG2961|consen 107 KIGIPVL--------RHSVKKPACTAEEVEYHFGNSHVCTSSELIMVGDRL---------------FTDIVYANRMGSLG 163 (190)
T ss_pred hhCCceE--------eecccCCCccHHHHHHHhCCcccCChhHeEEEccch---------------hhhHhhhhhcccee
Confidence 7788853 12233344444444432 212235789999999998 39999999888655
Q ss_pred c
Q psy4598 181 F 181 (369)
Q Consensus 181 ~ 181 (369)
+
T Consensus 164 V 164 (190)
T KOG2961|consen 164 V 164 (190)
T ss_pred E
Confidence 3
No 288
>PF13173 AAA_14: AAA domain
Probab=97.47 E-value=0.00062 Score=56.81 Aligned_cols=75 Identities=15% Similarity=0.206 Sum_probs=50.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCcchhHHH----HHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDTLGSWQK----CVSVMKAALD-SGLSVVVDNTNPDKESRHRYIE 343 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~~~~~~~----~~~~~~~~l~-~g~~vIiD~tn~~~~~r~~~~~ 343 (369)
+++++.|+.|+||||+++++++.+ ++.+++.|+.+.... +.+...+... ....+++|....-+.....+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~ 82 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPDWEDALKF 82 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhccHHHHHHH
Confidence 578999999999999999999864 488999988764332 2233333322 3456889987665555555555
Q ss_pred HHHh
Q psy4598 344 AAKQ 347 (369)
Q Consensus 344 la~~ 347 (369)
+...
T Consensus 83 l~d~ 86 (128)
T PF13173_consen 83 LVDN 86 (128)
T ss_pred HHHh
Confidence 5543
No 289
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=97.46 E-value=0.00037 Score=65.75 Aligned_cols=58 Identities=26% Similarity=0.391 Sum_probs=44.7
Q ss_pred ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC
Q psy4598 25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN 104 (369)
Q Consensus 25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~ 104 (369)
.|++++||||||+.+.. .+.|...++|++|+++|++++|+|-.+ . ..+..+++.++
T Consensus 2 ~kli~~DlDGTLl~~~~------------~i~~~~~~ai~~l~~~G~~~~iaTGR~--------~----~~~~~~~~~l~ 57 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDH------------HLGEKTLSTLARLRERDITLTFATGRH--------V----LEMQHILGALS 57 (272)
T ss_pred ccEEEEeCCCcCcCCCC------------cCCHHHHHHHHHHHHCCCEEEEECCCC--------H----HHHHHHHHHcC
Confidence 58999999999996431 267889999999999999999999632 1 13445667777
Q ss_pred CC
Q psy4598 105 VP 106 (369)
Q Consensus 105 i~ 106 (369)
+.
T Consensus 58 ~~ 59 (272)
T PRK15126 58 LD 59 (272)
T ss_pred CC
Confidence 64
No 290
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.45 E-value=0.00088 Score=67.25 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=31.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG 307 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~ 307 (369)
.|.+|+|+|++||||||.+..|+..+ .+.+++.|.++
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 35789999999999999999998643 56789999975
No 291
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=97.45 E-value=0.00041 Score=65.13 Aligned_cols=42 Identities=33% Similarity=0.589 Sum_probs=36.5
Q ss_pred ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598 25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN 78 (369)
Q Consensus 25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN 78 (369)
.|++++|+||||+.... .+.|...++|++|+++|++++|+|-
T Consensus 3 ~kli~~DlDGTLl~~~~------------~i~~~~~~ai~~~~~~G~~~~iaTG 44 (272)
T PRK10530 3 YRVIALDLDGTLLTPKK------------TILPESLEALARAREAGYKVIIVTG 44 (272)
T ss_pred ccEEEEeCCCceECCCC------------ccCHHHHHHHHHHHHCCCEEEEEcC
Confidence 58999999999996542 2678899999999999999999996
No 292
>PRK14974 cell division protein FtsY; Provisional
Probab=97.45 E-value=0.0013 Score=64.22 Aligned_cols=37 Identities=19% Similarity=0.373 Sum_probs=29.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCcch
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDTLG 307 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~ 307 (369)
.|.+|+++|+||+||||.+..++.. ..+.+++.|.+|
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 4689999999999999977777654 245678889774
No 293
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.40 E-value=0.00022 Score=62.89 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC--cEEEeCC
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRD 304 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D 304 (369)
+|++.|+|||||||+|..++..++ +.+|...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 689999999999999999998864 5666654
No 294
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.39 E-value=0.00074 Score=61.87 Aligned_cols=74 Identities=12% Similarity=0.258 Sum_probs=44.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCC--cEEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHh
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQ 347 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~ 347 (369)
.-+++.||||+||||+|+.+++.++ +..++...+..-..+... ...++.+..+.||-.+.-....++++--+-+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~i-l~~l~~~~ILFIDEIHRlnk~~qe~LlpamE 126 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAI-LTNLKEGDILFIDEIHRLNKAQQEILLPAME 126 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHH-HHT--TT-EEEECTCCC--HHHHHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHH-HHhcCCCcEEEEechhhccHHHHHHHHHHhc
Confidence 4579999999999999999999875 455666555332233222 2335667777788877654455544444443
No 295
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=97.39 E-value=0.00047 Score=64.38 Aligned_cols=56 Identities=25% Similarity=0.428 Sum_probs=42.6
Q ss_pred EEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC
Q psy4598 27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP 106 (369)
Q Consensus 27 ~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~ 106 (369)
+++|||||||+.... .+-+...++|++|+++|++++|+|+.+ ...+..+++.+++.
T Consensus 1 li~~DlDGTLl~~~~------------~i~~~~~~~i~~l~~~G~~~~iaTGR~------------~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 1 LIFIDLDGTLLNDDH------------TISPSTKEALAKLREKGIKVVLATGRP------------YKEVKNILKELGLD 56 (256)
T ss_pred CEEEeCCCCCCCCCC------------ccCHHHHHHHHHHHHCCCeEEEEeCCC------------HHHHHHHHHHcCCC
Confidence 478999999996421 257889999999999999999999843 12345566777764
No 296
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.39 E-value=0.00065 Score=62.59 Aligned_cols=110 Identities=13% Similarity=0.165 Sum_probs=68.6
Q ss_pred CCceEEEEecCCceeecCC--------CCCCCCCccccc--------cccccHHHHHHHHHHCCcEEEEEecCCCcCCCC
Q psy4598 23 NSAKIASFDLDGTLITTKS--------GKVFPVDTHDWK--------LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKK 86 (369)
Q Consensus 23 ~~~k~~~fDlDgTLi~~~s--------g~~~~~~~~d~~--------~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~ 86 (369)
...-+++||+|-|++...+ |..| +...|. ...|++.+.++.|+++|++|+++|+-+
T Consensus 75 dg~~A~V~DIDET~LsN~py~~~~~~g~~~~--~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~------ 146 (229)
T TIGR01675 75 DGMDAWIFDVDDTLLSNIPYYKKHGYGTEKT--DPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRW------ 146 (229)
T ss_pred CCCcEEEEccccccccCHHHHHHhccCCCcC--CHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCC------
Confidence 4567899999999987542 1122 122232 147999999999999999999999943
Q ss_pred CCHHHHHHHHHHHHHHcCCC-eE-EEEecCCCCCCCC----chhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598 87 MSTRDFQAKAEKIIKSLNVP-VQ-MFVATQYDRYRKP----VPGMWEYLSQEKNGDLAIDISQSFYAGDAA 151 (369)
Q Consensus 87 ~~~~~~~~~i~~~l~~l~i~-~~-~~~~~~~~~~rKP----~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~ 151 (369)
+..+.....-|...|++ ++ ++.-. .+..+|+ +.+....+.++ |..| ..+|||..
T Consensus 147 ---e~~r~~T~~nL~~~G~~~~~~LiLR~-~~d~~~~~~~yKs~~R~~l~~~---GYrI----v~~iGDq~ 206 (229)
T TIGR01675 147 ---EELRNATLDNLINAGFTGWKHLILRG-LEDSNKTVVTYKSEVRKSLMEE---GYRI----WGNIGDQW 206 (229)
T ss_pred ---hHHHHHHHHHHHHcCCCCcCeeeecC-CCCCCchHhHHHHHHHHHHHhC---CceE----EEEECCCh
Confidence 23445566677888987 44 33322 2223443 23344444432 1123 46799999
No 297
>PHA00729 NTP-binding motif containing protein
Probab=97.38 E-value=0.00095 Score=61.36 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL 296 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~ 296 (369)
.-|+++|+||+||||+|.+++..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999875
No 298
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=97.37 E-value=0.00046 Score=59.72 Aligned_cols=106 Identities=21% Similarity=0.290 Sum_probs=60.0
Q ss_pred eEEEEecCCceeecCCCCCCC-------CCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHH
Q psy4598 26 KIASFDLDGTLITTKSGKVFP-------VDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEK 98 (369)
Q Consensus 26 k~~~fDlDgTLi~~~sg~~~~-------~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~ 98 (369)
|+++|||||||+.......-. ....-...+-|++.+.|++|.+. |.++|+|..+ +.....
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~------------~~ya~~ 67 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSAS------------EEYAEP 67 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-------------HHHHHH
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHh-ceEEEEEeeh------------hhhhhH
Confidence 689999999999886432110 00112233579999999999554 9999999821 233444
Q ss_pred HHHHcC---CCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598 99 IIKSLN---VPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAA 151 (369)
Q Consensus 99 ~l~~l~---i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~ 151 (369)
+++.+. ..|...+..+.+..++-.. + .-++. ++-+++++++|-|+.
T Consensus 68 v~~~ldp~~~~~~~~~~r~~~~~~~~~~-~--KdL~~----l~~~~~~vvivDD~~ 116 (159)
T PF03031_consen 68 VLDALDPNGKLFSRRLYRDDCTFDKGSY-I--KDLSK----LGRDLDNVVIVDDSP 116 (159)
T ss_dssp HHHHHTTTTSSEEEEEEGGGSEEETTEE-E----GGG----SSS-GGGEEEEES-G
T ss_pred HHHhhhhhcccccccccccccccccccc-c--cchHH----HhhccccEEEEeCCH
Confidence 444443 4577555555444322211 1 22222 234689999999987
No 299
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.37 E-value=0.0013 Score=66.18 Aligned_cols=37 Identities=27% Similarity=0.307 Sum_probs=30.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhcc------CCcEEEeCCcch
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKP------LNYTTVNRDTLG 307 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~------~~~~~i~~D~~~ 307 (369)
.|.+|+++|+|||||||++..|+.. ..+.+++.|.++
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 4679999999999999998877654 247789999875
No 300
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.001 Score=63.71 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=34.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
.+.+|+++||.|||||.+|-.|+++++..+||.|.+
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 367999999999999999999999999999999986
No 301
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=97.36 E-value=0.0011 Score=61.33 Aligned_cols=83 Identities=18% Similarity=0.281 Sum_probs=53.9
Q ss_pred ccccHHHHHHHH--HHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eE-EEEec----------------
Q psy4598 55 LFSNIESVLKQY--LDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQ-MFVAT---------------- 113 (369)
Q Consensus 55 ~~p~v~~~L~~L--~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~-~~~~~---------------- 113 (369)
+.|++.+.|+.+ +..|+.++|+|+- ..-.|+.+|+..|+. |. ++.-+
T Consensus 72 ~~pgm~~~l~~l~~~~~~~~~~IiSDa------------Ns~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~ 139 (234)
T PF06888_consen 72 IDPGMKELLRFLAKNQRGFDLIIISDA------------NSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHS 139 (234)
T ss_pred CCccHHHHHHHHHhcCCCceEEEEeCC------------cHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccC
Confidence 469999999999 4589999999982 234688999999884 43 32211
Q ss_pred CCCCCCCC----chhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598 114 QYDRYRKP----VPGMWEYLSQEKNGDLAIDISQSFYAGDAA 151 (369)
Q Consensus 114 ~~~~~rKP----~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~ 151 (369)
+.|. +-| +-..++.+++.... -++..++++||||..
T Consensus 140 h~C~-~C~~NmCK~~il~~~~~~~~~-~g~~~~rviYiGDG~ 179 (234)
T PF06888_consen 140 HGCS-LCPPNMCKGKILERLLQEQAQ-RGVPYDRVIYIGDGR 179 (234)
T ss_pred CCCC-cCCCccchHHHHHHHHHHHhh-cCCCcceEEEECCCC
Confidence 1122 112 13456666654210 135678999999998
No 302
>PRK09087 hypothetical protein; Validated
Probab=97.35 E-value=0.00093 Score=61.64 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=28.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT 305 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~ 305 (369)
..+++.|++||||||+++.+++..++.+++.+.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~ 77 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNE 77 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHH
Confidence 457999999999999999999888888887753
No 303
>PRK10867 signal recognition particle protein; Provisional
Probab=97.35 E-value=0.0024 Score=64.39 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=30.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhcc------CCcEEEeCCcch
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKP------LNYTTVNRDTLG 307 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~------~~~~~i~~D~~~ 307 (369)
.|.+|+++|++||||||++..|+.. ..+.+++.|.++
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 4689999999999999977777653 246789999875
No 304
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.35 E-value=0.00055 Score=64.70 Aligned_cols=59 Identities=15% Similarity=0.274 Sum_probs=44.5
Q ss_pred CCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHH
Q psy4598 23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKS 102 (369)
Q Consensus 23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~ 102 (369)
...+++++||||||+.+.. ...+...++|++|+++|++++|+|-.+ . ..+..+++.
T Consensus 5 ~~~~lI~~DlDGTLL~~~~------------~i~~~~~~ai~~l~~~Gi~~viaTGR~--------~----~~i~~~~~~ 60 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHT------------YDWQPAAPWLTRLREAQVPVILCSSKT--------A----AEMLPLQQT 60 (271)
T ss_pred CCCeEEEEeCccCCcCCCC------------cCcHHHHHHHHHHHHcCCeEEEEcCCC--------H----HHHHHHHHH
Confidence 3468999999999996431 145778899999999999999999632 1 234556677
Q ss_pred cCC
Q psy4598 103 LNV 105 (369)
Q Consensus 103 l~i 105 (369)
+++
T Consensus 61 l~~ 63 (271)
T PRK03669 61 LGL 63 (271)
T ss_pred hCC
Confidence 776
No 305
>KOG3308|consensus
Probab=97.34 E-value=0.00031 Score=62.75 Aligned_cols=34 Identities=15% Similarity=0.358 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC-CcEEEeCCcc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL-NYTTVNRDTL 306 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~-~~~~i~~D~~ 306 (369)
-+|-+.|.+.|||||||+.|.+.+ ++.+|++|++
T Consensus 5 ~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDF 39 (225)
T KOG3308|consen 5 LIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDF 39 (225)
T ss_pred EEEEeecccCCCHhHHHHHHHHHccCCeeeccccc
Confidence 366688999999999999999987 7899999997
No 306
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.34 E-value=0.00051 Score=62.20 Aligned_cols=89 Identities=10% Similarity=0.206 Sum_probs=50.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh---------------------------------------HHHH
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS---------------------------------------WQKC 312 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~---------------------------------------~~~~ 312 (369)
+.++++.||+|+|||.+|-+|++.+++++|+.|.+.. .+.+
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~~~L 80 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAHERL 80 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHHHHHHH
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHHHHHHH
Confidence 3689999999999999999999999999999998721 1222
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHH-hcCCeEEEEEEeCCHHH
Q psy4598 313 VSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAK-QHGVRCIAVHMNISKEH 363 (369)
Q Consensus 313 ~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~-~~~~~v~~v~l~~~~e~ 363 (369)
...+... ..+..+|+++...+. ...+.+-.- ..++..++.++.++.+.
T Consensus 81 i~~v~~~-~~~~~~IlEGGSISL--l~~m~~~~~w~~~f~w~i~rl~l~d~~ 129 (233)
T PF01745_consen 81 ISEVNSY-SAHGGLILEGGSISL--LNCMAQDPYWSLDFRWHIRRLRLPDEE 129 (233)
T ss_dssp HHHHHTT-TTSSEEEEEE--HHH--HHHHHH-TTTSSSSEEEEEE-----HH
T ss_pred HHHHHhc-cccCceEEeCchHHH--HHHHHhcccccCCCeEEEEEEECCChH
Confidence 2222222 336689999876432 222222111 25788889999888754
No 307
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.34 E-value=0.00081 Score=63.94 Aligned_cols=58 Identities=17% Similarity=0.297 Sum_probs=44.1
Q ss_pred ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC
Q psy4598 25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN 104 (369)
Q Consensus 25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~ 104 (369)
.|++++||||||+.... ..++.+.++|++|+++|+.++++|... . ..+..+.+.++
T Consensus 1 ~KLIftDLDGTLLd~~~------------~~~~~a~~aL~~Lk~~GI~vVlaTGRt--------~----~ev~~l~~~Lg 56 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEF------------NSYGAARQALAALERRSIPLVLYSLRT--------R----AQLEHLCRQLR 56 (302)
T ss_pred CcEEEEeCCCCCcCCCC------------cCCHHHHHHHHHHHHCCCEEEEEcCCC--------H----HHHHHHHHHhC
Confidence 37899999999996432 145668999999999999999999742 1 23555667777
Q ss_pred CC
Q psy4598 105 VP 106 (369)
Q Consensus 105 i~ 106 (369)
+.
T Consensus 57 l~ 58 (302)
T PRK12702 57 LE 58 (302)
T ss_pred CC
Confidence 73
No 308
>PRK10976 putative hydrolase; Provisional
Probab=97.33 E-value=0.00073 Score=63.40 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=36.1
Q ss_pred ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598 25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN 78 (369)
Q Consensus 25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN 78 (369)
.|++++||||||+.... .+-|...++|++|+++|++++|+|-
T Consensus 2 ikli~~DlDGTLl~~~~------------~is~~~~~ai~~l~~~G~~~~iaTG 43 (266)
T PRK10976 2 YQVVASDLDGTLLSPDH------------TLSPYAKETLKLLTARGIHFVFATG 43 (266)
T ss_pred ceEEEEeCCCCCcCCCC------------cCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 48999999999996532 1577899999999999999999996
No 309
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=97.33 E-value=0.00065 Score=63.85 Aligned_cols=42 Identities=21% Similarity=0.399 Sum_probs=36.1
Q ss_pred ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598 25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN 78 (369)
Q Consensus 25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN 78 (369)
.|++++||||||+.... .+-|...++|++|+++|++++|+|-
T Consensus 3 ~kli~~DlDGTLl~~~~------------~i~~~~~~ai~~l~~~G~~~~iaTG 44 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH------------TISPAVKQAIAAARAKGVNVVLTTG 44 (270)
T ss_pred eEEEEEecCCcCcCCCC------------ccCHHHHHHHHHHHHCCCEEEEecC
Confidence 58999999999996431 2577889999999999999999996
No 310
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.32 E-value=0.0015 Score=64.89 Aligned_cols=37 Identities=35% Similarity=0.459 Sum_probs=32.3
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG 307 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~ 307 (369)
.|.+|+|+|+.||||||.+..|+..+ ..-.++.|.+|
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R 140 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR 140 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence 46899999999999999999998764 57788999986
No 311
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.30 E-value=0.00068 Score=56.12 Aligned_cols=25 Identities=28% Similarity=0.671 Sum_probs=19.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL 296 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~ 296 (369)
..++++.|+||+|||++++.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998854
No 312
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.0019 Score=63.75 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=31.8
Q ss_pred cccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598 270 ALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG 307 (369)
Q Consensus 270 ~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~ 307 (369)
..+.+|+++||+||||||++..|+..+ .+.+++.|.++
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR 246 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR 246 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC
Confidence 346899999999999999999998643 46789999985
No 313
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.30 E-value=0.0014 Score=70.50 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
.|.+.|+|||||||+++.|++.+++.+++...+
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~ 35 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAM 35 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcE
Confidence 689999999999999999999999999998876
No 314
>PRK07933 thymidylate kinase; Validated
Probab=97.29 E-value=0.0022 Score=58.65 Aligned_cols=94 Identities=15% Similarity=0.196 Sum_probs=57.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCC-----cEEEeC-----Ccc----h-------------h-----------HHHHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLN-----YTTVNR-----DTL----G-------------S-----------WQKCVS 314 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~-----~~~i~~-----D~~----~-------------~-----------~~~~~~ 314 (369)
++|.+-|+-||||||+++.|++.+. +.++.. ..+ + . ++. .+
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~-~~ 79 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGA-RD 79 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhh-HH
Confidence 3799999999999999999998752 121210 101 0 0 111 13
Q ss_pred HHHHHHhCCCcEEEeCCCCCHH-------------HHHHHHHHHHh--cC--CeEEEEEEeCCHHHHHHH
Q psy4598 315 VMKAALDSGLSVVVDNTNPDKE-------------SRHRYIEAAKQ--HG--VRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 315 ~~~~~l~~g~~vIiD~tn~~~~-------------~r~~~~~la~~--~~--~~v~~v~l~~~~e~~~~R 367 (369)
.+..+++.|..||.|-...+.- .-..|+..... .+ .|=.+|++++|++++.+|
T Consensus 80 ~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~R 149 (213)
T PRK07933 80 ELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAER 149 (213)
T ss_pred HHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHH
Confidence 3455667898889886544321 11122222221 12 466899999999999888
No 315
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=97.29 E-value=0.00078 Score=63.20 Aligned_cols=59 Identities=25% Similarity=0.464 Sum_probs=47.2
Q ss_pred CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL 103 (369)
Q Consensus 24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l 103 (369)
+.|+++||+||||..... . ..|.+.++|++++++|++++|+|-.+ + ..+..+++.+
T Consensus 2 ~~kli~~DlDGTLl~~~~-----------~-i~~~~~~al~~~~~~g~~v~iaTGR~-----------~-~~~~~~~~~l 57 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNK-----------T-ISPETKEALARLREKGVKVVLATGRP-----------L-PDVLSILEEL 57 (264)
T ss_pred CeeEEEEcCCCCccCCCC-----------c-cCHHHHHHHHHHHHCCCEEEEECCCC-----------h-HHHHHHHHHc
Confidence 468999999999997653 1 68889999999999999999999732 1 3456677888
Q ss_pred CCC
Q psy4598 104 NVP 106 (369)
Q Consensus 104 ~i~ 106 (369)
++.
T Consensus 58 ~~~ 60 (264)
T COG0561 58 GLD 60 (264)
T ss_pred CCC
Confidence 875
No 316
>KOG0744|consensus
Probab=97.29 E-value=0.00054 Score=65.47 Aligned_cols=28 Identities=21% Similarity=0.534 Sum_probs=25.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcE
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYT 299 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~ 299 (369)
-++|++.||||+|||+++++|++.+...
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4799999999999999999999987544
No 317
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.29 E-value=0.0021 Score=62.39 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=30.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG 307 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~ 307 (369)
.+.+|+++||+||||||++..|+..+ .+.+++.|.++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 35789999999999999999998753 46778888764
No 318
>PRK13976 thymidylate kinase; Provisional
Probab=97.28 E-value=0.0011 Score=60.55 Aligned_cols=96 Identities=19% Similarity=0.174 Sum_probs=59.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC----C--cEEEeCC---c-c----h---------------------hHHHHHHHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL----N--YTTVNRD---T-L----G---------------------SWQKCVSVMK 317 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~----~--~~~i~~D---~-~----~---------------------~~~~~~~~~~ 317 (369)
.+|++-|..||||||.++.|++.+ + -+++... . + + .++.......
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~ 80 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVIL 80 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999998764 2 1222211 0 1 0 0112233456
Q ss_pred HHHhCCCcEEEeCCCCCHHHH---------HHHHHHHH--hcCCeEEEEEEeCCHHHHHHHc
Q psy4598 318 AALDSGLSVVVDNTNPDKESR---------HRYIEAAK--QHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 318 ~~l~~g~~vIiD~tn~~~~~r---------~~~~~la~--~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
.+++.|..||.|-...+.... +.+..+.+ ....|=..+++++|++++.+|-
T Consensus 81 p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri 142 (209)
T PRK13976 81 PALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRA 142 (209)
T ss_pred HHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHh
Confidence 677899999988765432111 11222221 1224778999999999999883
No 319
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.28 E-value=0.0023 Score=60.77 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=30.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG 307 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~ 307 (369)
.+.+|+++|++|+||||.+..|+..+ ...+++.|.++
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 45789999999999999999987643 46778999764
No 320
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=97.27 E-value=0.00068 Score=61.94 Aligned_cols=55 Identities=31% Similarity=0.481 Sum_probs=42.8
Q ss_pred EEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC
Q psy4598 28 ASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP 106 (369)
Q Consensus 28 ~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~ 106 (369)
+++|+||||+.+.. . +.|...++|++|+++|++++|+|-.+ ...+..++..+++.
T Consensus 1 i~~DlDGTLl~~~~-----------~-i~~~~~~al~~l~~~g~~~~i~TGR~------------~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 1 IFSDLDGTLLNSDG-----------K-ISPETIEALKELQEKGIKLVIATGRS------------YSSIKRLLKELGID 55 (254)
T ss_dssp EEEECCTTTCSTTS-----------S-SCHHHHHHHHHHHHTTCEEEEECSST------------HHHHHHHHHHTTHC
T ss_pred cEEEECCceecCCC-----------e-eCHHHHHHHHhhcccceEEEEEccCc------------ccccccccccccch
Confidence 58999999986432 2 57899999999999999999999732 22356667777764
No 321
>PRK04296 thymidine kinase; Provisional
Probab=97.27 E-value=0.0025 Score=57.08 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=55.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeC--Ccc---h----------------hHHHHHHHHHHHHhCC-C
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNR--DTL---G----------------SWQKCVSVMKAALDSG-L 324 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~--D~~---~----------------~~~~~~~~~~~~l~~g-~ 324 (369)
-.+++++|+|||||||++..++.+. .+.++.. |.- . ..+.+...+.+ .+.. .
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~d 80 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKID 80 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCCC
Confidence 3688999999999999999887653 3444533 321 0 01222233333 1112 2
Q ss_pred cEEEeCCC-CCHHHHHHHHHHHHhcCCeEEEEEEe
Q psy4598 325 SVVVDNTN-PDKESRHRYIEAAKQHGVRCIAVHMN 358 (369)
Q Consensus 325 ~vIiD~tn-~~~~~r~~~~~la~~~~~~v~~v~l~ 358 (369)
.||||-.. ...++...+++.++..++.+.+.-++
T Consensus 81 vviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 81 CVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred EEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 57888654 44555677888888899999888887
No 322
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=97.26 E-value=0.00095 Score=60.82 Aligned_cols=55 Identities=25% Similarity=0.370 Sum_probs=41.0
Q ss_pred EEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC
Q psy4598 28 ASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP 106 (369)
Q Consensus 28 ~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~ 106 (369)
+++||||||+.... . ..+...++|++|+++|++++++|+.+ ...+..+++.+++.
T Consensus 2 i~~DlDGTLL~~~~-----------~-~~~~~~~~l~~l~~~gi~~~i~TgR~------------~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 2 VFSDLDGTLLDSHS-----------Y-DWQPAAPWLTRLQEAGIPVILCTSKT------------AAEVEYLQKALGLT 56 (221)
T ss_pred EEEeCCCCCcCCCC-----------C-CcHHHHHHHHHHHHCCCeEEEEcCCC------------HHHHHHHHHHcCCC
Confidence 68999999996432 1 24448899999999999999999943 12355666777764
No 323
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.26 E-value=0.00025 Score=66.71 Aligned_cols=38 Identities=18% Similarity=0.448 Sum_probs=31.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchhHHH
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGSWQK 311 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~~~~ 311 (369)
+|.++|.+||||||+++++.+.+ .+.+|+.|.+..|.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r 43 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYER 43 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCc
Confidence 47899999999999999998754 478999999876544
No 324
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.0016 Score=59.21 Aligned_cols=98 Identities=21% Similarity=0.218 Sum_probs=62.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccC---Cc-EEEeC---Cc----------------ch-----------hHHHHHHHH
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPL---NY-TTVNR---DT----------------LG-----------SWQKCVSVM 316 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~---~~-~~i~~---D~----------------~~-----------~~~~~~~~~ 316 (369)
+..+|.+=|.-||||||.++.|.+.+ +. +++.. +. +. .++.+.+..
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~i 81 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEVI 81 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999998864 21 11111 10 00 123345566
Q ss_pred HHHHhCCCcEEEeCCCCCHHH------------HHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598 317 KAALDSGLSVVVDNTNPDKES------------RHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 317 ~~~l~~g~~vIiD~tn~~~~~------------r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn 368 (369)
..++..|..||.|-...+.-. ...+.+.+...-.|-..+++++|.+++++|-
T Consensus 82 ~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~ 145 (208)
T COG0125 82 KPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERI 145 (208)
T ss_pred HHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHH
Confidence 777888989998865433221 1222222222115678999999999999984
No 325
>KOG3877|consensus
Probab=97.23 E-value=0.0027 Score=59.47 Aligned_cols=97 Identities=19% Similarity=0.339 Sum_probs=66.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEEe---CCcc---------h--------------------------------
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN---RDTL---------G-------------------------------- 307 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~---~D~~---------~-------------------------------- 307 (369)
.++|++-|+-|||||+||++|++.++.++.. .|.+ +
T Consensus 71 SkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q~ 150 (393)
T KOG3877|consen 71 SKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQD 150 (393)
T ss_pred ceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHHH
Confidence 4789999999999999999999998765553 4443 0
Q ss_pred -----hHHHHHHHHHHHHhCCCcEEEeCCCC---------------CHHHHHHHHHHHHh----cCCeEEEEEEeCCHHH
Q psy4598 308 -----SWQKCVSVMKAALDSGLSVVVDNTNP---------------DKESRHRYIEAAKQ----HGVRCIAVHMNISKEH 363 (369)
Q Consensus 308 -----~~~~~~~~~~~~l~~g~~vIiD~tn~---------------~~~~r~~~~~la~~----~~~~v~~v~l~~~~e~ 363 (369)
.+.+....+...|..|+.||++-+-. .++.+..+-++-+. .=-+-.+||+++|...
T Consensus 151 r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv~~ 230 (393)
T KOG3877|consen 151 RIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPVNK 230 (393)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCcHH
Confidence 12334566677788999999986532 34444444333221 2235679999999987
Q ss_pred HHHHc
Q psy4598 364 AKHNI 368 (369)
Q Consensus 364 ~~~Rn 368 (369)
+++|-
T Consensus 231 v~~~I 235 (393)
T KOG3877|consen 231 VLENI 235 (393)
T ss_pred HHHHH
Confidence 77663
No 326
>PTZ00174 phosphomannomutase; Provisional
Probab=97.23 E-value=0.00047 Score=64.31 Aligned_cols=43 Identities=23% Similarity=0.462 Sum_probs=37.3
Q ss_pred CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN 78 (369)
Q Consensus 24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN 78 (369)
..|++++||||||..+.. .+.|...++|++|+++|++++|+|-
T Consensus 4 ~~klia~DlDGTLL~~~~------------~is~~~~~ai~~l~~~Gi~~viaTG 46 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRN------------PITQEMKDTLAKLKSKGFKIGVVGG 46 (247)
T ss_pred CCeEEEEECcCCCcCCCC------------CCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 469999999999996642 2578889999999999999999996
No 327
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.22 E-value=0.00071 Score=62.10 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLK 294 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~ 294 (369)
|..++++|+||+||||+|+.+..
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 56799999999999999999964
No 328
>PRK06620 hypothetical protein; Validated
Probab=97.21 E-value=0.0016 Score=59.58 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=25.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVN 302 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~ 302 (369)
..+++.|+|||||||+++.+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 457999999999999999998887655544
No 329
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.20 E-value=0.0035 Score=58.99 Aligned_cols=74 Identities=16% Similarity=0.282 Sum_probs=50.7
Q ss_pred CCceEEEEecCCceeecCC--------CCCCCCCccccc---------cccccHHHHHHHHHHCCcEEEEEecCCCcCCC
Q psy4598 23 NSAKIASFDLDGTLITTKS--------GKVFPVDTHDWK---------LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRK 85 (369)
Q Consensus 23 ~~~k~~~fDlDgTLi~~~s--------g~~~~~~~~d~~---------~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~ 85 (369)
...-+++||+|+|++...+ +..|. ...|. ...|++.+.++.|++.|++|+++||.+
T Consensus 99 ~~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~--~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~----- 171 (275)
T TIGR01680 99 HEKDTFLFNIDGTALSNIPYYKKHGYGSEKFD--SELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRL----- 171 (275)
T ss_pred CCCCEEEEECccccccCHHHHHHhcCCCCcCC--hhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCc-----
Confidence 3457899999999984321 12222 22232 247899999999999999999999943
Q ss_pred CCCHHHHHHHHHHHHHHcCCCe
Q psy4598 86 KMSTRDFQAKAEKIIKSLNVPV 107 (369)
Q Consensus 86 ~~~~~~~~~~i~~~l~~l~i~~ 107 (369)
+..+....+-|.+.|++.
T Consensus 172 ----e~~r~aT~~NL~kaGy~~ 189 (275)
T TIGR01680 172 ----KDKQAVTEANLKKAGYHT 189 (275)
T ss_pred ----hhHHHHHHHHHHHcCCCC
Confidence 223444555577789863
No 330
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=97.20 E-value=0.00077 Score=62.88 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=32.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG 307 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~ 307 (369)
.+|-++|..||||||+++.|.+.+|+.+|+.|.+.
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~ia 36 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVV 36 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHH
Confidence 47899999999999999999998999999999984
No 331
>KOG3220|consensus
Probab=97.19 E-value=0.0014 Score=58.68 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=30.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
.+|=++|-.||||||+++.+. .+++.+|++|.+
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~v 34 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVV 34 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHH
Confidence 467789999999999999998 889999999987
No 332
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=97.18 E-value=0.00073 Score=70.24 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=60.6
Q ss_pred ccccHHHHHHHHHHCCc-EEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHh
Q psy4598 55 LFSNIESVLKQYLDDGY-KLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEK 133 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~-~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~ 133 (369)
++|++.+.|++|+++|+ +++|+||.+ ....+.+++++|+.- ++... ...++..+++.+.
T Consensus 363 l~~~~~e~i~~L~~~Gi~~v~vvTgd~------------~~~a~~i~~~lgi~~-~f~~~----~p~~K~~~i~~l~--- 422 (536)
T TIGR01512 363 PRPDAAEAIAELKALGIEKVVMLTGDR------------RAVAERVARELGIDE-VHAEL----LPEDKLEIVKELR--- 422 (536)
T ss_pred chHHHHHHHHHHHHcCCCcEEEEcCCC------------HHHHHHHHHHcCChh-hhhcc----CcHHHHHHHHHHH---
Confidence 79999999999999999 999999943 345677788888731 11110 1122333444332
Q ss_pred cCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCC
Q psy4598 134 NGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLA 179 (369)
Q Consensus 134 ~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~ 179 (369)
-..++++||||.. .|+.+++++|+.
T Consensus 423 -----~~~~~v~~vGDg~----------------nD~~al~~A~vg 447 (536)
T TIGR01512 423 -----EKYGPVAMVGDGI----------------NDAPALAAADVG 447 (536)
T ss_pred -----hcCCEEEEEeCCH----------------HHHHHHHhCCEE
Confidence 3357999999999 899999999973
No 333
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.16 E-value=0.003 Score=52.13 Aligned_cols=77 Identities=13% Similarity=0.204 Sum_probs=44.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh---HHHHHH-------HHHHHHhCCCcEEEeCCCCC-H
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS---WQKCVS-------VMKAALDSGLSVVVDNTNPD-K 335 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~---~~~~~~-------~~~~~l~~g~~vIiD~tn~~-~ 335 (369)
...+++.|+||+|||++++.++..+ .+..++...... ...... ...........+|+|..+.- .
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4578999999999999999999865 344444443321 111111 11122234457889987642 3
Q ss_pred HHHHHHHHHHHhc
Q psy4598 336 ESRHRYIEAAKQH 348 (369)
Q Consensus 336 ~~r~~~~~la~~~ 348 (369)
.....+.......
T Consensus 99 ~~~~~~~~~i~~~ 111 (151)
T cd00009 99 GAQNALLRVLETL 111 (151)
T ss_pred HHHHHHHHHHHhc
Confidence 3444555544443
No 334
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.16 E-value=0.00087 Score=65.80 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=39.4
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc----hhHHHHHHHHHHHHhCCC--cEEEeCCC
Q psy4598 275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL----GSWQKCVSVMKAALDSGL--SVVVDNTN 332 (369)
Q Consensus 275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~----~~~~~~~~~~~~~l~~g~--~vIiD~tn 332 (369)
.||-||||+||||+|+.++...++.+..-... ...+...+.++.....|+ .++||-..
T Consensus 51 mIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIH 114 (436)
T COG2256 51 MILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIH 114 (436)
T ss_pred eEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhh
Confidence 58999999999999999999886555443332 345566666665555444 33466554
No 335
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.14 E-value=0.0051 Score=53.39 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=21.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKP 295 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~ 295 (369)
++.=|+++|+||+||||++..++..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHH
Confidence 4566899999999999999999864
No 336
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.0022 Score=63.85 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=31.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccC---------CcEEEeCCcch
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPL---------NYTTVNRDTLG 307 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~---------~~~~i~~D~~~ 307 (369)
.|.+|+++|++|+||||.+..|+..+ .+.+++.|.++
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 46799999999999999999998642 46788999975
No 337
>PRK06893 DNA replication initiation factor; Validated
Probab=97.13 E-value=0.0021 Score=59.33 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=26.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCC
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRD 304 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D 304 (369)
..++|.|+||+|||+++++++... ++.+++..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 468999999999999999998653 56666664
No 338
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=97.13 E-value=0.0023 Score=59.60 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=36.4
Q ss_pred CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHC-CcEEEEEecCC
Q psy4598 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDD-GYKLVIFTNQG 80 (369)
Q Consensus 24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~-G~~i~i~TNq~ 80 (369)
+.+.++||+||||.... ..+..-. ..|++.+.|++|.+. +..++|+|-.+
T Consensus 2 ~~~~l~lD~DGTL~~~~------~~p~~~~-~~~~~~~~L~~L~~~~~~~v~ivSGR~ 52 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIV------PDPDAAV-VSDRLLTILQKLAARPHNAIWIISGRK 52 (244)
T ss_pred CcEEEEEecCccccCCc------CCCcccC-CCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 45788999999998532 2233223 588999999999876 56778999653
No 339
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.0017 Score=56.55 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=29.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC-CcEEEeCCcc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL-NYTTVNRDTL 306 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~-~~~~i~~D~~ 306 (369)
+++++++|.||+||||+.+...+.+ ...++|.-++
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~ 39 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDL 39 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHH
Confidence 4789999999999999999999887 6666665554
No 340
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.12 E-value=0.00034 Score=64.50 Aligned_cols=35 Identities=23% Similarity=0.430 Sum_probs=32.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
+.+|.+.|+|||||||+++.+++.+++.+++.+.+
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~ 38 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAM 38 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchh
Confidence 36899999999999999999999999999999885
No 341
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.0046 Score=61.38 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=30.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG 307 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~ 307 (369)
+..|+|+|++||||||++..|+..+ .+.+++.|.++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 5789999999999999999998643 46788999875
No 342
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.0018 Score=64.82 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=30.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC------CcEEEeCCcch
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL------NYTTVNRDTLG 307 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~------~~~~i~~D~~~ 307 (369)
+.+|+++|++||||||++..|+..+ .+.+++.|.++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 5789999999999999999998643 36678899875
No 343
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.08 E-value=0.0014 Score=63.01 Aligned_cols=33 Identities=21% Similarity=0.454 Sum_probs=30.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
++|+++||.|||||.+|-.|++. +..+||.|.+
T Consensus 5 ~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred cEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 58999999999999999999999 5699999997
No 344
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.08 E-value=0.00047 Score=56.38 Aligned_cols=33 Identities=21% Similarity=0.551 Sum_probs=26.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCC-----cEEEeCCc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLN-----YTTVNRDT 305 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~-----~~~i~~D~ 305 (369)
..++++|+|||||||+++.++..+. ..+++.+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 4689999999999999999998752 45555554
No 345
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=97.08 E-value=0.0001 Score=68.08 Aligned_cols=110 Identities=16% Similarity=0.278 Sum_probs=65.4
Q ss_pred CCceEEEEecCCceeecCCCCCC---------CCCccccc--------cccccHHHHHHHHHHCCcEEEEEecCCCcCCC
Q psy4598 23 NSAKIASFDLDGTLITTKSGKVF---------PVDTHDWK--------LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRK 85 (369)
Q Consensus 23 ~~~k~~~fDlDgTLi~~~sg~~~---------~~~~~d~~--------~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~ 85 (369)
....+++||+|+|++... .| .-++.+|. ...|++.+.++.++++|++|+++||-+.
T Consensus 70 ~~~~avv~DIDeTvLsn~---~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~---- 142 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNS---PYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPE---- 142 (229)
T ss_dssp TSEEEEEEESBTTTEEHH---HHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEET----
T ss_pred CCCcEEEEECCcccccCH---HHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCc----
Confidence 456789999999988542 22 01223342 3579999999999999999999999432
Q ss_pred CCCHHHHHHHHHHHHHHcCCCe-E-EEEecCCCCCCCC----chhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598 86 KMSTRDFQAKAEKIIKSLNVPV-Q-MFVATQYDRYRKP----VPGMWEYLSQEKNGDLAIDISQSFYAGDAA 151 (369)
Q Consensus 86 ~~~~~~~~~~i~~~l~~l~i~~-~-~~~~~~~~~~rKP----~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~ 151 (369)
..+.....-|.+.|++. + +++.+..+...+. +..-...+.++ |..| ..+|||..
T Consensus 143 -----~~r~~T~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~---Gy~I----i~~iGD~~ 202 (229)
T PF03767_consen 143 -----SQREATEKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKK---GYRI----IANIGDQL 202 (229)
T ss_dssp -----TCHHHHHHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHT---TEEE----EEEEESSG
T ss_pred -----hhHHHHHHHHHHcCCCccchhccccccccccccccccchHHHHHHHHc---CCcE----EEEeCCCH
Confidence 13334445577778753 3 3333322211100 22333334333 1133 67899999
No 346
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.08 E-value=0.0019 Score=60.68 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKP 295 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~ 295 (369)
..-+++.||||+||||+|+.+++.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHH
Confidence 345789999999999999999875
No 347
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.06 E-value=0.00033 Score=68.51 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=24.5
Q ss_pred ccccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598 269 AALDSVLIMIGSQGSGKSSFVSTYLKPL 296 (369)
Q Consensus 269 ~~~~~lIll~G~pGSGKSTla~~L~~~~ 296 (369)
....++++|+|||||||||+|++|++.+
T Consensus 75 ~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 75 EERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3446899999999999999999999875
No 348
>KOG1532|consensus
Probab=97.03 E-value=0.0012 Score=61.80 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=31.8
Q ss_pred ccccccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598 267 MKAALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT 305 (369)
Q Consensus 267 ~~~~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~ 305 (369)
..+..|.+|+++|..|||||||.++|..++ +..+||.|.
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDP 57 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDP 57 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCH
Confidence 345567899999999999999999997653 467788775
No 349
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.02 E-value=0.0085 Score=51.11 Aligned_cols=78 Identities=22% Similarity=0.231 Sum_probs=55.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCc-------ch-hHHHHHHHHHHHHhCCCcEEEeCC--CCCHHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDT-------LG-SWQKCVSVMKAALDSGLSVVVDNT--NPDKESR 338 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~-------~~-~~~~~~~~~~~~l~~g~~vIiD~t--n~~~~~r 338 (369)
.++.+.|++||||||+.+.++... |-+.++... +. ..++....++..+..-..+|+|-+ +++...+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~ 106 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESI 106 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 578999999999999999998764 323332211 11 123445567777777778899965 5688889
Q ss_pred HHHHHHHHhcCC
Q psy4598 339 HRYIEAAKQHGV 350 (369)
Q Consensus 339 ~~~~~la~~~~~ 350 (369)
..+.++.++.+.
T Consensus 107 ~~l~~~l~~~~~ 118 (144)
T cd03221 107 EALEEALKEYPG 118 (144)
T ss_pred HHHHHHHHHcCC
Confidence 999888887753
No 350
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.00058 Score=61.84 Aligned_cols=34 Identities=21% Similarity=0.440 Sum_probs=31.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
..|-+-||+||||||+|+.+++.+++.+|++-.+
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGam 38 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAM 38 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHH
Confidence 5788999999999999999999999999998775
No 351
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.01 E-value=0.0013 Score=61.14 Aligned_cols=29 Identities=38% Similarity=0.535 Sum_probs=21.5
Q ss_pred EEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598 277 MIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT 305 (369)
Q Consensus 277 l~G~pGSGKSTla~~L~~~~-----~~~~i~~D~ 305 (369)
++|||||||||+++.+.+.+ +..+||.|-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcch
Confidence 57999999999999998863 566777765
No 352
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.00 E-value=0.00052 Score=70.70 Aligned_cols=8 Identities=13% Similarity=0.015 Sum_probs=4.2
Q ss_pred HHHHHHHh
Q psy4598 126 WEYLSQEK 133 (369)
Q Consensus 126 ~~~~~~~~ 133 (369)
.+.+++++
T Consensus 239 i~~iL~~l 246 (526)
T TIGR01663 239 IEAIVAKL 246 (526)
T ss_pred HHHHHHHc
Confidence 45555554
No 353
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.0054 Score=60.68 Aligned_cols=63 Identities=17% Similarity=0.318 Sum_probs=42.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc----C---CcEEEeCCcchh--------HHHH-------------HHHHHHHHhCCC
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKP----L---NYTTVNRDTLGS--------WQKC-------------VSVMKAALDSGL 324 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~----~---~~~~i~~D~~~~--------~~~~-------------~~~~~~~l~~g~ 324 (369)
.+++|+||+|+||||++..|+.. . .+.+++.|.++. |.+. ...+...+....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 47899999999999999999864 2 356788888741 1110 112223344556
Q ss_pred cEEEeCCCCCH
Q psy4598 325 SVVVDNTNPDK 335 (369)
Q Consensus 325 ~vIiD~tn~~~ 335 (369)
.|+||.....+
T Consensus 218 lVLIDTaG~~~ 228 (374)
T PRK14722 218 MVLIDTIGMSQ 228 (374)
T ss_pred EEEEcCCCCCc
Confidence 78899887664
No 354
>PRK05439 pantothenate kinase; Provisional
Probab=96.98 E-value=0.00074 Score=65.13 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=31.6
Q ss_pred ccccEEEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcc
Q psy4598 269 AALDSVLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTL 306 (369)
Q Consensus 269 ~~~~~lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~ 306 (369)
...|.+|.++|+|||||||+|+.|.+.+ .+.+|+.|.+
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 3456799999999999999999998743 3678898887
No 355
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.97 E-value=0.0022 Score=57.64 Aligned_cols=42 Identities=31% Similarity=0.481 Sum_probs=34.6
Q ss_pred EEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecC
Q psy4598 27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQ 79 (369)
Q Consensus 27 ~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq 79 (369)
+++||+||||..+..+ .+.|.+.++|++|+++|.+++|+|..
T Consensus 1 li~~D~DgTL~~~~~~-----------~~~~~~~~~l~~l~~~g~~~~i~TGR 42 (204)
T TIGR01484 1 LLFFDLDGTLLDPNAH-----------ELSPETIEALERLREAGVKVVLVTGR 42 (204)
T ss_pred CEEEeCcCCCcCCCCC-----------cCCHHHHHHHHHHHHCCCEEEEECCC
Confidence 4789999999964311 15788999999999999999999984
No 356
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=96.97 E-value=0.0039 Score=58.61 Aligned_cols=73 Identities=22% Similarity=0.410 Sum_probs=56.4
Q ss_pred CCCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHH
Q psy4598 21 VCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKII 100 (369)
Q Consensus 21 ~~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l 100 (369)
.-....+++||||.|||.+.. +-+...|.|.+.|.+|++.|..+++=|-.+ ++.+...+
T Consensus 118 ~~~~phVIVfDlD~TLItd~~---------~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~------------~eHV~~sl 176 (297)
T PF05152_consen 118 VWEPPHVIVFDLDSTLITDEG---------DVRIRDPAVYDSLRELKEQGCVLVLWSYGN------------REHVRHSL 176 (297)
T ss_pred cCCCCcEEEEECCCcccccCC---------ccccCChHHHHHHHHHHHcCCEEEEecCCC------------HHHHHHHH
Confidence 345567999999999997642 223457999999999999999999999732 34566677
Q ss_pred HHcCCC--eEEEEecC
Q psy4598 101 KSLNVP--VQMFVATQ 114 (369)
Q Consensus 101 ~~l~i~--~~~~~~~~ 114 (369)
++++++ |++++|-+
T Consensus 177 ~~~~L~~~Fd~ii~~G 192 (297)
T PF05152_consen 177 KELKLEGYFDIIICGG 192 (297)
T ss_pred HHhCCccccEEEEeCC
Confidence 788874 88888865
No 357
>CHL00181 cbbX CbbX; Provisional
Probab=96.96 E-value=0.0035 Score=59.99 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKP 295 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~ 295 (369)
.-++|.|+||+||||+|+.+++.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999775
No 358
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=96.96 E-value=0.0046 Score=55.68 Aligned_cols=106 Identities=17% Similarity=0.239 Sum_probs=69.1
Q ss_pred CCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598 22 CNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK 101 (369)
Q Consensus 22 ~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~ 101 (369)
....|.+.+|||+||+...+- ...-+...=|++.+.|+.+.+ .|.|+|+|..+ .+.++.++.
T Consensus 18 ~~~kklLVLDLDeTLvh~~~~-----~~~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~------------~~ya~~~l~ 79 (195)
T TIGR02245 18 REGKKLLVLDIDYTLFDHRSP-----AETGEELMRPYLHEFLTSAYE-DYDIVIWSATS------------MKWIEIKMT 79 (195)
T ss_pred CCCCcEEEEeCCCceEccccc-----CCCceEEeCCCHHHHHHHHHh-CCEEEEEecCC------------HHHHHHHHH
Confidence 455689999999999975431 123344567999999999998 69999999832 345666677
Q ss_pred HcCCC------eEEEEec----------CCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598 102 SLNVP------VQMFVAT----------QYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAA 151 (369)
Q Consensus 102 ~l~i~------~~~~~~~----------~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~ 151 (369)
.+++. +..+... ....+-||-..+|. +++ -..+++++++|-|..
T Consensus 80 ~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~~lw~----~l~--~~~~~~ntiiVDd~p 139 (195)
T TIGR02245 80 ELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLGVIWA----LLP--EFYSMKNTIMFDDLR 139 (195)
T ss_pred HhcccCCccceEEEEeccccceeeEeeccCcEEEeecHHhhh----hcc--cCCCcccEEEEeCCH
Confidence 76541 2222210 11112566666665 222 124789999999987
No 359
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.95 E-value=0.0058 Score=62.16 Aligned_cols=89 Identities=16% Similarity=0.194 Sum_probs=53.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEE-------------------eCCcc----------hhHHHHHHHHHHHHh-
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTV-------------------NRDTL----------GSWQKCVSVMKAALD- 321 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i-------------------~~D~~----------~~~~~~~~~~~~~l~- 321 (369)
+..++++|+||+||||+|+.+++.+++..- +.|.+ ...+.+.+.+.....
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~ 119 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMG 119 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhc
Confidence 467899999999999999999998765310 01111 011222222222212
Q ss_pred -CCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeCC
Q psy4598 322 -SGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNIS 360 (369)
Q Consensus 322 -~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~~ 360 (369)
..+.+|||-. .++......+++...+....+++|.....
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte 160 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTE 160 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCC
Confidence 2346788854 45677777888777765556666655443
No 360
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=96.94 E-value=0.0021 Score=60.05 Aligned_cols=56 Identities=25% Similarity=0.320 Sum_probs=41.2
Q ss_pred EEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC
Q psy4598 27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP 106 (369)
Q Consensus 27 ~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~ 106 (369)
++++|+||||+.... . ..+...++|++|+++|++++|+|..+ . ..+..+++.+|++
T Consensus 1 li~~DlDGTll~~~~-----------~-~~~~~~~~i~~l~~~g~~~~~~TgR~--------~----~~~~~~~~~~~~~ 56 (256)
T TIGR01486 1 WIFTDLDGTLLDPHG-----------Y-DWGPAKEVLERLQELGIPVIPCTSKT--------A----AEVEYLRKELGLE 56 (256)
T ss_pred CEEEcCCCCCcCCCC-----------c-CchHHHHHHHHHHHCCCeEEEEcCCC--------H----HHHHHHHHHcCCC
Confidence 378999999996531 1 24458899999999999999999632 1 2345667788764
No 361
>KOG0780|consensus
Probab=96.94 E-value=0.0061 Score=59.65 Aligned_cols=91 Identities=20% Similarity=0.227 Sum_probs=61.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh--HHHH------------------------HHHHHHH
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS--WQKC------------------------VSVMKAA 319 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~--~~~~------------------------~~~~~~~ 319 (369)
.|.+|+++|+.||||||.+..|+-++ .+..+..|++|. ++++ .+...+.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 46789999999999999999988654 577899999963 2222 1222333
Q ss_pred HhCCCcEE-EeCCCC---CHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598 320 LDSGLSVV-VDNTNP---DKESRHRYIEAAKQHGVRCIAVHMNISK 361 (369)
Q Consensus 320 l~~g~~vI-iD~tn~---~~~~r~~~~~la~~~~~~v~~v~l~~~~ 361 (369)
-+.+..+| +|.... ..+..+++++..+..+-.-+++++|.+.
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi 225 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI 225 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 34555554 555443 2233455667777777777888888876
No 362
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.93 E-value=0.0054 Score=55.37 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=29.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCc
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDT 305 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~ 305 (369)
...++.+.|+||||||+++.+++.. ..+.+++.+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3478999999999999999998753 2588899876
No 363
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.92 E-value=0.00067 Score=57.15 Aligned_cols=72 Identities=17% Similarity=0.289 Sum_probs=40.7
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCcE--EEeCCcchhHHHHH--------------HHHHHHHhCCCcEEEeCCCCCH-HH
Q psy4598 275 LIMIGSQGSGKSSFVSTYLKPLNYT--TVNRDTLGSWQKCV--------------SVMKAALDSGLSVVVDNTNPDK-ES 337 (369)
Q Consensus 275 Ill~G~pGSGKSTla~~L~~~~~~~--~i~~D~~~~~~~~~--------------~~~~~~l~~g~~vIiD~tn~~~-~~ 337 (369)
|+|.|+||+|||++++.+++.++.. .++.....+...+. .....++..+..+++|..|... +.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~v 81 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPEV 81 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHHH
Confidence 7899999999999999999887533 23322211111110 1112233467788899888533 33
Q ss_pred HHHHHHHHH
Q psy4598 338 RHRYIEAAK 346 (369)
Q Consensus 338 r~~~~~la~ 346 (369)
...+..+..
T Consensus 82 ~~~L~~ll~ 90 (139)
T PF07728_consen 82 LESLLSLLE 90 (139)
T ss_dssp HHTTHHHHS
T ss_pred HHHHHHHHh
Confidence 344444443
No 364
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.92 E-value=0.0042 Score=61.46 Aligned_cols=73 Identities=16% Similarity=0.285 Sum_probs=51.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcchh--------HHHH-------------HHHHHHHHhCC
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTLGS--------WQKC-------------VSVMKAALDSG 323 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~~~--------~~~~-------------~~~~~~~l~~g 323 (369)
..+|+|+||.|.||||-...|+.++ .+-+|+.|.+|. |.++ ...+...++..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 5799999999999987777776543 578999999862 3221 34455566667
Q ss_pred CcEEEeCCCCCHHHHHHHHHH
Q psy4598 324 LSVVVDNTNPDKESRHRYIEA 344 (369)
Q Consensus 324 ~~vIiD~tn~~~~~r~~~~~l 344 (369)
..|.||..+.+........++
T Consensus 283 d~ILVDTaGrs~~D~~~i~el 303 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEEL 303 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHH
Confidence 788899988766555444443
No 365
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.92 E-value=0.0018 Score=59.06 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=37.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCC
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTN 332 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn 332 (369)
+..|+|.|+||+||||+++.++... .+.+++.+.+.... ......+.....+|||...
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~lLvIDdi~ 100 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD---PEVLEGLEQADLVCLDDVE 100 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH---HHHHhhcccCCEEEEeChh
Confidence 4678999999999999999998653 45666665543211 1122223334466777664
No 366
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.0032 Score=55.46 Aligned_cols=90 Identities=12% Similarity=0.212 Sum_probs=56.2
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC----CC-eE-----EE---------EecCC
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN----VP-VQ-----MF---------VATQY 115 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~----i~-~~-----~~---------~~~~~ 115 (369)
+.|+..+.++..++++.+++|+|. |+ .-.|..+++.+. ++ ++ .+ +.+.+
T Consensus 74 Idp~fKef~e~ike~di~fiVvSs--Gm----------~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~d 141 (220)
T COG4359 74 IDPGFKEFVEWIKEHDIPFIVVSS--GM----------DPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDD 141 (220)
T ss_pred cCccHHHHHHHHHHcCCCEEEEeC--CC----------chHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCc
Confidence 468999999999999999999997 43 223444444443 32 11 11 12223
Q ss_pred CCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598 116 DRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF 180 (369)
Q Consensus 116 ~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f 180 (369)
+.|.--.+..+..+.+. .+..||+||+. +|+.+|+..-+-|
T Consensus 142 s~fG~dK~~vI~~l~e~--------~e~~fy~GDsv----------------sDlsaaklsDllF 182 (220)
T COG4359 142 SQFGHDKSSVIHELSEP--------NESIFYCGDSV----------------SDLSAAKLSDLLF 182 (220)
T ss_pred cccCCCcchhHHHhhcC--------CceEEEecCCc----------------ccccHhhhhhhHh
Confidence 33333334555555543 46699999998 6777777666655
No 367
>KOG1969|consensus
Probab=96.90 E-value=0.0018 Score=67.81 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=38.3
Q ss_pred ccccccEEEEEEcCCCCcHHHHHHHHhccCCcEEE--eCCcchhHHHHHHHHHHHH
Q psy4598 267 MKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTV--NRDTLGSWQKCVSVMKAAL 320 (369)
Q Consensus 267 ~~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i--~~D~~~~~~~~~~~~~~~l 320 (369)
..+|.+++.+||||||-||||+|+.++++.|+.++ |+.+-|+-..+.+.+..++
T Consensus 321 s~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~av 376 (877)
T KOG1969|consen 321 SKRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAV 376 (877)
T ss_pred cCCCccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHH
Confidence 34555689999999999999999999999876555 4545454444444444333
No 368
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.89 E-value=0.002 Score=63.24 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=29.1
Q ss_pred cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCC
Q psy4598 270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRD 304 (369)
Q Consensus 270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D 304 (369)
..|..++|.||||||||.+|++++..+++.+|..+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vs 180 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMS 180 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEE
Confidence 45688899999999999999999999876555443
No 369
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.89 E-value=0.0028 Score=60.71 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=43.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCc--EEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCC-CCHHHHHHHHHHHHh
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNY--TTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTN-PDKESRHRYIEAAKQ 347 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~--~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn-~~~~~r~~~~~la~~ 347 (369)
+..+++.||||+|||++++.++..++. ..++.........+... ...+..+..++||... ........+..+...
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~ 107 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAI-LTNLEEGDVLFIDEIHRLSPAVEELLYPAMED 107 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHH-HHhcccCCEEEEehHhhhCHHHHHHhhHHHhh
Confidence 445789999999999999999988753 33333222212222222 2334556677888643 233334445444443
No 370
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.88 E-value=0.0044 Score=62.28 Aligned_cols=74 Identities=12% Similarity=0.212 Sum_probs=43.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEE--EeCCcc--hhHHHHHHHHHHHHh--CCCcEEEeCCC-CCHHHHHHHHHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTT--VNRDTL--GSWQKCVSVMKAALD--SGLSVVVDNTN-PDKESRHRYIEAA 345 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~--i~~D~~--~~~~~~~~~~~~~l~--~g~~vIiD~tn-~~~~~r~~~~~la 345 (369)
.-++|.|+||+||||+|+.+++..+..+ ++.... ...+.+.+.+..... .+..++||... .+......++...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l 116 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV 116 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHh
Confidence 4578899999999999999998765433 333221 122333333333232 34466777654 3445555555554
Q ss_pred H
Q psy4598 346 K 346 (369)
Q Consensus 346 ~ 346 (369)
.
T Consensus 117 e 117 (413)
T PRK13342 117 E 117 (413)
T ss_pred h
Confidence 4
No 371
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.88 E-value=0.001 Score=63.69 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=29.9
Q ss_pred ccccEEEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcc
Q psy4598 269 AALDSVLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTL 306 (369)
Q Consensus 269 ~~~~~lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~ 306 (369)
...|.+|-+.|++||||||+++.|...+ .+.+++.|.+
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f 103 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF 103 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence 3456889999999999999998875432 3667888876
No 372
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=96.87 E-value=0.0042 Score=51.75 Aligned_cols=87 Identities=20% Similarity=0.325 Sum_probs=65.2
Q ss_pred ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeE-EEEecCCCCCCCCchhHHHHHHHHh
Q psy4598 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQ-MFVATQYDRYRKPVPGMWEYLSQEK 133 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~-~~~~~~~~~~rKP~~gm~~~~~~~~ 133 (369)
+++.|++.|++|++. ..|+|+|-. -+..+.++++-.|+|.+ +++..+ +.|=..++.++
T Consensus 31 lf~ev~e~iqeL~d~-V~i~IASgD------------r~gsl~~lae~~gi~~~rv~a~a~--------~e~K~~ii~eL 89 (152)
T COG4087 31 LFSEVSETIQELHDM-VDIYIASGD------------RKGSLVQLAEFVGIPVERVFAGAD--------PEMKAKIIREL 89 (152)
T ss_pred EcHhhHHHHHHHHHh-heEEEecCC------------cchHHHHHHHHcCCceeeeecccC--------HHHHHHHHHHh
Confidence 899999999999999 999999962 23356777888899987 444332 44555666654
Q ss_pred cCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598 134 NGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT 182 (369)
Q Consensus 134 ~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~ 182 (369)
+ -.-+.++||||-+ +|+.+-+++.+-..+
T Consensus 90 k----k~~~k~vmVGnGa----------------ND~laLr~ADlGI~t 118 (152)
T COG4087 90 K----KRYEKVVMVGNGA----------------NDILALREADLGICT 118 (152)
T ss_pred c----CCCcEEEEecCCc----------------chHHHhhhcccceEE
Confidence 2 2347899999999 899998888777544
No 373
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.0063 Score=62.21 Aligned_cols=27 Identities=30% Similarity=0.581 Sum_probs=23.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCC
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLN 297 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~ 297 (369)
.+..++|.||||+||||+|+.+++.++
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356789999999999999999988754
No 374
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.86 E-value=0.0018 Score=60.99 Aligned_cols=73 Identities=18% Similarity=0.359 Sum_probs=45.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCc--EEEeC-------CcchhHH---------HHH----------------HHHHHH
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNY--TTVNR-------DTLGSWQ---------KCV----------------SVMKAA 319 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~--~~i~~-------D~~~~~~---------~~~----------------~~~~~~ 319 (369)
-|+|.|+||+|||++|+.+++.++. ..++. |.+..+. ... ..+..+
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A 102 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLA 102 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHH
Confidence 4678999999999999999987654 33332 2222111 000 112334
Q ss_pred HhCCCcEEEeCCCC-CHHHHHHHHHHHH
Q psy4598 320 LDSGLSVVVDNTNP-DKESRHRYIEAAK 346 (369)
Q Consensus 320 l~~g~~vIiD~tn~-~~~~r~~~~~la~ 346 (369)
+..|..+++|-.+. .++....+..+..
T Consensus 103 ~~~g~~lllDEi~r~~~~~q~~Ll~~Le 130 (262)
T TIGR02640 103 VREGFTLVYDEFTRSKPETNNVLLSVFE 130 (262)
T ss_pred HHcCCEEEEcchhhCCHHHHHHHHHHhc
Confidence 56777899998874 4555566666554
No 375
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.86 E-value=0.0045 Score=52.52 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL 306 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~ 306 (369)
++++.|+||+||||++..++... .+.+++.+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 36899999999999999997653 4567776653
No 376
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.86 E-value=0.012 Score=52.31 Aligned_cols=75 Identities=21% Similarity=0.253 Sum_probs=50.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeC--------Cc-ch-hHHHHHHHHHHHHhCCCcEEEeCC--CCCHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNR--------DT-LG-SWQKCVSVMKAALDSGLSVVVDNT--NPDKE 336 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~--------D~-~~-~~~~~~~~~~~~l~~g~~vIiD~t--n~~~~ 336 (369)
.++.++|++||||||+.+.++-.. +.+.++. +. +. .-++....++..+.....+++|-+ +++..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~ 105 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIE 105 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 578999999999999999998653 3333322 11 21 123445667777777788899964 56778
Q ss_pred HHHHHHHHHHh
Q psy4598 337 SRHRYIEAAKQ 347 (369)
Q Consensus 337 ~r~~~~~la~~ 347 (369)
.+..+.++.++
T Consensus 106 ~~~~l~~~l~~ 116 (177)
T cd03222 106 QRLNAARAIRR 116 (177)
T ss_pred HHHHHHHHHHH
Confidence 87766665543
No 377
>PLN02887 hydrolase family protein
Probab=96.86 E-value=0.0024 Score=66.67 Aligned_cols=45 Identities=33% Similarity=0.375 Sum_probs=38.3
Q ss_pred CCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598 22 CNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN 78 (369)
Q Consensus 22 ~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN 78 (369)
+++.|++++||||||+.... .+.+...++|++|+++|++++|+|-
T Consensus 305 ~~~iKLIa~DLDGTLLn~d~------------~Is~~t~eAI~kl~ekGi~~vIATG 349 (580)
T PLN02887 305 KPKFSYIFCDMDGTLLNSKS------------QISETNAKALKEALSRGVKVVIATG 349 (580)
T ss_pred ccCccEEEEeCCCCCCCCCC------------ccCHHHHHHHHHHHHCCCeEEEEcC
Confidence 35679999999999996531 2578899999999999999999996
No 378
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.85 E-value=0.013 Score=52.85 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPL 296 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~ 296 (369)
+|+++|++||||||+.+.+....
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999877654
No 379
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.85 E-value=0.0089 Score=57.52 Aligned_cols=78 Identities=12% Similarity=0.159 Sum_probs=45.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCC--cEEEeCCcchhHHHHHHHHHHHH------hCCCcEEEeCCCC--CHHHHHH
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDTLGSWQKCVSVMKAAL------DSGLSVVVDNTNP--DKESRHR 340 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D~~~~~~~~~~~~~~~l------~~g~~vIiD~tn~--~~~~r~~ 340 (369)
.|.++++.|+||+||||+++.+++..+ ...++...-+ ...+...+.... ...+.+|+|.... .......
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~ 120 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRH 120 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCccc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHH
Confidence 457888899999999999999998754 4455554411 221111111111 2345788887542 3334445
Q ss_pred HHHHHHhcC
Q psy4598 341 YIEAAKQHG 349 (369)
Q Consensus 341 ~~~la~~~~ 349 (369)
+..+..+..
T Consensus 121 L~~~le~~~ 129 (316)
T PHA02544 121 LRSFMEAYS 129 (316)
T ss_pred HHHHHHhcC
Confidence 555444433
No 380
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.85 E-value=0.00074 Score=67.50 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=40.7
Q ss_pred cccccccccchhhhhhhccccccEEEEEEcCCCCcHHHHHHHHhccCCcE
Q psy4598 250 TTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYT 299 (369)
Q Consensus 250 ~~i~r~~~~~~~~~~~~~~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~ 299 (369)
+.|-.+....|+--.+...+.....|+|+|.+|||||||+++|++.++..
T Consensus 197 T~IR~~p~~~w~~i~~~vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 197 TQIRENPFRYWEYIPTEVRPFFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred HHHhhCHHHHHHhcCHHHhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 34455566667777777778888999999999999999999999987654
No 381
>PRK10671 copA copper exporting ATPase; Provisional
Probab=96.83 E-value=0.0065 Score=66.52 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=71.2
Q ss_pred eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC
Q psy4598 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV 105 (369)
Q Consensus 26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i 105 (369)
.++++-.||+++.-- ...| .++|++.+.|++|++.|++++++|+.. ....+.+++.+|+
T Consensus 631 ~~v~va~~~~~~g~~-------~l~d--~~r~~a~~~i~~L~~~gi~v~~~Tgd~------------~~~a~~ia~~lgi 689 (834)
T PRK10671 631 TPVLLAVDGKAAALL-------AIRD--PLRSDSVAALQRLHKAGYRLVMLTGDN------------PTTANAIAKEAGI 689 (834)
T ss_pred eEEEEEECCEEEEEE-------EccC--cchhhHHHHHHHHHHCCCeEEEEcCCC------------HHHHHHHHHHcCC
Confidence 456666677765221 0111 268999999999999999999999943 2345667888998
Q ss_pred CeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598 106 PVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF 180 (369)
Q Consensus 106 ~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f 180 (369)
. +++... .|.. -..+++++ ....++++||||.. +|+.+++++|+..
T Consensus 690 ~-~~~~~~------~p~~--K~~~i~~l----~~~~~~v~~vGDg~----------------nD~~al~~Agvgi 735 (834)
T PRK10671 690 D-EVIAGV------LPDG--KAEAIKRL----QSQGRQVAMVGDGI----------------NDAPALAQADVGI 735 (834)
T ss_pred C-EEEeCC------CHHH--HHHHHHHH----hhcCCEEEEEeCCH----------------HHHHHHHhCCeeE
Confidence 5 222221 1221 23355554 34567899999999 8999999999943
No 382
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=96.82 E-value=0.0047 Score=54.72 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=54.5
Q ss_pred EEcCCCCcHHHHHHHHhccC---Cc-EEEe---CCc-c----hh---------------------HHHHHHHHHHHHhCC
Q psy4598 277 MIGSQGSGKSSFVSTYLKPL---NY-TTVN---RDT-L----GS---------------------WQKCVSVMKAALDSG 323 (369)
Q Consensus 277 l~G~pGSGKSTla~~L~~~~---~~-~~i~---~D~-~----~~---------------------~~~~~~~~~~~l~~g 323 (369)
+=|+.||||||+++.|.+.+ +. +++. .+. + +. ...+...+..+++.|
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~g 80 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKRG 80 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34999999999999999875 32 2222 111 1 10 012233456678899
Q ss_pred CcEEEeCCCCCHH---------HHHHHHHHHHhcC--CeEEEEEEeCCHHHHHHHc
Q psy4598 324 LSVVVDNTNPDKE---------SRHRYIEAAKQHG--VRCIAVHMNISKEHAKHNI 368 (369)
Q Consensus 324 ~~vIiD~tn~~~~---------~r~~~~~la~~~~--~~v~~v~l~~~~e~~~~Rn 368 (369)
..||+|-...+.- .......+.+... .|=.++++++|++++.+|.
T Consensus 81 ~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~ 136 (186)
T PF02223_consen 81 KIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRI 136 (186)
T ss_dssp SEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHH
T ss_pred CEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHH
Confidence 9999986422110 0112222222222 5567899999999999984
No 383
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.81 E-value=0.012 Score=59.60 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=27.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCcc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDTL 306 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~~ 306 (369)
..+-++||+||||||+++.+.--+ +.+.+|.-++
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l 400 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADL 400 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhh
Confidence 356789999999999999998653 6778876655
No 384
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.0087 Score=62.99 Aligned_cols=89 Identities=12% Similarity=0.157 Sum_probs=53.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEE--------------------------EeCCc---chhHHHHHHHHHHHH--
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTT--------------------------VNRDT---LGSWQKCVSVMKAAL-- 320 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~--------------------------i~~D~---~~~~~~~~~~~~~~l-- 320 (369)
+..++|+|++|+||||+|+.+++.+++.. ++... +...+.+...+...-
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~ 116 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQ 116 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhc
Confidence 57889999999999999999998875421 11110 111222222222221
Q ss_pred hCCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeCC
Q psy4598 321 DSGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNIS 360 (369)
Q Consensus 321 ~~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~~ 360 (369)
...+.+|||.. .++......+++..++..-.+.+|.....
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 23457888865 44667778888888775444455554433
No 385
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.81 E-value=0.0052 Score=56.29 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=27.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL 306 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~ 306 (369)
..++++|+||+|||++++.++... .+.+++...+
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 468999999999999999998754 5666666543
No 386
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.009 Score=59.78 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=24.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCc
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNY 298 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~ 298 (369)
.+..+++.||||+||||+|+.+++.+.+
T Consensus 37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 37 VGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3567899999999999999999987654
No 387
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.80 E-value=0.0084 Score=54.52 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=28.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT 305 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~ 305 (369)
..++++.|+|||||||++.+++... ++.+++.+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 4689999999999999999988642 567888764
No 388
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.80 E-value=0.005 Score=58.77 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKP 295 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~ 295 (369)
-+++.|+||+||||+|+.+++.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~ 81 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQI 81 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999877664
No 389
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.0086 Score=64.91 Aligned_cols=90 Identities=13% Similarity=0.180 Sum_probs=55.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcEE--------------------------EeCCc-c--hhHHHHHHHHHHHH-
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTT--------------------------VNRDT-L--GSWQKCVSVMKAAL- 320 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~--------------------------i~~D~-~--~~~~~~~~~~~~~l- 320 (369)
.+..++|+|+||+||||+|+.+++.+++.. ++... . ...+.+.+.+...-
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~ 116 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPS 116 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhh
Confidence 457789999999999999999999875531 12111 0 11223333222221
Q ss_pred -hCCCcEEEeC-CCCCHHHHHHHHHHHHhcCCeEEEEEEeCC
Q psy4598 321 -DSGLSVVVDN-TNPDKESRHRYIEAAKQHGVRCIAVHMNIS 360 (369)
Q Consensus 321 -~~g~~vIiD~-tn~~~~~r~~~~~la~~~~~~v~~v~l~~~ 360 (369)
...+.+|||- -.++......+++...+..-.++++.....
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 1234778884 445777788888888776656666665443
No 390
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.79 E-value=0.011 Score=54.70 Aligned_cols=58 Identities=22% Similarity=0.247 Sum_probs=38.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCcchhHHHHHHHH-------HHHHhCCCcEEEeCC
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDTLGSWQKCVSVM-------KAALDSGLSVVVDNT 331 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~~~~~~~~~~-------~~~l~~g~~vIiD~t 331 (369)
..++++.|+||||||+++.++... ..+.+++.+.- .+.+.+.+ ......|...++|+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~--~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~ 90 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH--PVQVRRNMAQFGWDVRKYEEEGKFAIVDAF 90 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC--HHHHHHHHHHhCCCHHHHhhcCCEEEEecc
Confidence 468999999999999999886543 25778887652 22222222 234466777788764
No 391
>PRK05642 DNA replication initiation factor; Validated
Probab=96.79 E-value=0.0053 Score=56.89 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=37.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCC
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTN 332 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn 332 (369)
..++|.|++|+|||+++++++.. ..+.+++.+.+... .....+.+.....+|+|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~---~~~~~~~~~~~d~LiiDDi~ 107 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR---GPELLDNLEQYELVCLDDLD 107 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh---hHHHHHhhhhCCEEEEechh
Confidence 46789999999999999998642 46778887665321 12233334444466777764
No 392
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.76 E-value=0.0012 Score=65.75 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=30.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT 305 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~ 305 (369)
.|.-|+|.||||+|||++|++|++.+++.++..|.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 35678999999999999999999998887777763
No 393
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.013 Score=60.52 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=24.4
Q ss_pred cccEEEEEEcCCCCcHHHHHHHHhccCC
Q psy4598 270 ALDSVLIMIGSQGSGKSSFVSTYLKPLN 297 (369)
Q Consensus 270 ~~~~lIll~G~pGSGKSTla~~L~~~~~ 297 (369)
.++.+++|+|+||+||||+|+.+++.+.
T Consensus 34 ~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 34 RLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567889999999999999999988764
No 394
>PLN03025 replication factor C subunit; Provisional
Probab=96.75 E-value=0.0077 Score=58.38 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPL 296 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~ 296 (369)
-+++.||||+||||+++.+++.+
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999875
No 395
>KOG1533|consensus
Probab=96.74 E-value=0.0067 Score=55.65 Aligned_cols=32 Identities=34% Similarity=0.476 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT 305 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~ 305 (369)
--+++|||||||||...-..+-+ ....+|.|.
T Consensus 4 gqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDP 40 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDP 40 (290)
T ss_pred ceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCC
Confidence 34789999999999987766532 346666664
No 396
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.73 E-value=0.00035 Score=58.86 Aligned_cols=36 Identities=28% Similarity=0.508 Sum_probs=31.2
Q ss_pred EEEEEcCCCCCcchhhhhccCCCcccccccccccch
Q psy4598 225 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSW 260 (369)
Q Consensus 225 i~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~~~~~ 260 (369)
+++++|+||||||||++.+....++..|+.|.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~ 36 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRR 36 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHH
Confidence 578999999999999999886677889999987763
No 397
>PHA02244 ATPase-like protein
Probab=96.73 E-value=0.0049 Score=60.67 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=43.8
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhHHH----------HHHHHHHHHhCCCcEEEeCCCCC-HHHHHHHH
Q psy4598 275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSWQK----------CVSVMKAALDSGLSVVVDNTNPD-KESRHRYI 342 (369)
Q Consensus 275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~~~----------~~~~~~~~l~~g~~vIiD~tn~~-~~~r~~~~ 342 (369)
|+|.|+||+|||++|++++..++..++....+ ..+.. .......++..|..+++|-.+.. +.....+.
T Consensus 122 VLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~vq~~L~ 201 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIPEALIIIN 201 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCHHHHHHHH
Confidence 68899999999999999998876554433222 11100 11123445678889999988753 33334444
Q ss_pred HH
Q psy4598 343 EA 344 (369)
Q Consensus 343 ~l 344 (369)
.+
T Consensus 202 ~l 203 (383)
T PHA02244 202 SA 203 (383)
T ss_pred HH
Confidence 43
No 398
>PRK07429 phosphoribulokinase; Provisional
Probab=96.73 E-value=0.0018 Score=63.04 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=31.8
Q ss_pred ccccEEEEEEcCCCCcHHHHHHHHhccCC---cEEEeCCcc
Q psy4598 269 AALDSVLIMIGSQGSGKSSFVSTYLKPLN---YTTVNRDTL 306 (369)
Q Consensus 269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~---~~~i~~D~~ 306 (369)
...+.+|-++|++||||||+++.|+..++ ..+++.|.+
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~ 45 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY 45 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence 34567999999999999999999998865 567788876
No 399
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.72 E-value=0.011 Score=57.26 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPL 296 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~ 296 (369)
.+++.||||+||||+++.+++.+
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998764
No 400
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.72 E-value=0.0012 Score=57.39 Aligned_cols=26 Identities=19% Similarity=0.570 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCcEEE
Q psy4598 275 LIMIGSQGSGKSSFVSTYLKPLNYTTV 301 (369)
Q Consensus 275 Ill~G~pGSGKSTla~~L~~~~~~~~i 301 (369)
|+|+|.|||||||+++.|++. ++.++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999998 77766
No 401
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.71 E-value=0.014 Score=54.11 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=25.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCC
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRD 304 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D 304 (369)
.+|-+.||+||||||+-+.++--. |-+.++..
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~ 65 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGR 65 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCc
Confidence 688999999999999999998642 44555444
No 402
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.68 E-value=0.0039 Score=57.78 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=25.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT 305 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~ 305 (369)
..+++.|||||||||++.+++... .+.+++.+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 468999999999999999988653 245665554
No 403
>PF13479 AAA_24: AAA domain
Probab=96.68 E-value=0.0057 Score=55.79 Aligned_cols=56 Identities=18% Similarity=0.411 Sum_probs=36.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc-------------c--hhHHHHHHHHHHH---HhCCCcEEEeCC
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT-------------L--GSWQKCVSVMKAA---LDSGLSVVVDNT 331 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~-------------~--~~~~~~~~~~~~~---l~~g~~vIiD~t 331 (369)
.-++|.|+||+||||++..+-+ ..+|+.|. + ..|+.+.+...+. ...-..||||+.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~k---~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsi 77 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLPK---PLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSI 77 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCCC---eEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECH
Confidence 4579999999999999999933 23443332 2 3566666654333 333457888864
No 404
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=96.68 E-value=0.0021 Score=69.91 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=32.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
.+|.+.|||||||||+|+.|++.+++.+|+.+.+
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~ 68 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSF 68 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH
Confidence 5899999999999999999999999999999885
No 405
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=96.67 E-value=0.0032 Score=55.50 Aligned_cols=82 Identities=17% Similarity=0.243 Sum_probs=52.3
Q ss_pred cccHH----HHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCC---------CCC-
Q psy4598 56 FSNIE----SVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRY---------RKP- 121 (369)
Q Consensus 56 ~p~v~----~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~---------rKP- 121 (369)
+|++. +.|++++++|++++|+|.. ....++.+++.+|++...++|+..... ..+
T Consensus 87 ~~~~~~~~~e~i~~~~~~~~~v~IvS~~------------~~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~ 154 (192)
T PF12710_consen 87 FPGFIPDAMELIRELKDNGIKVVIVSGS------------PDEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSN 154 (192)
T ss_dssp CTTCHTTHHHHHHHHHHTTSEEEEEEEE------------EHHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEE
T ss_pred CcCchhhHHHHHHHHHHCCCEEEEECCC------------cHHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCC
Confidence 36667 9999999999999999972 345677778899987532333321100 001
Q ss_pred ---chhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598 122 ---VPGMWEYLSQEKNGDLAIDISQSFYAGDAA 151 (369)
Q Consensus 122 ---~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~ 151 (369)
+..++..+....+ . .++...++||||+.
T Consensus 155 ~~~K~~~l~~~~~~~~-~-~~~~~~~~~iGDs~ 185 (192)
T PF12710_consen 155 CGGKAEALKELYIRDE-E-DIDPDRVIAIGDSI 185 (192)
T ss_dssp ESHHHHHHHHHHHHHH-H-THTCCEEEEEESSG
T ss_pred CCcHHHHHHHHHHHhh-c-CCCCCeEEEEECCH
Confidence 3446665511000 0 36788999999999
No 406
>PRK13768 GTPase; Provisional
Probab=96.67 E-value=0.003 Score=59.30 Aligned_cols=35 Identities=26% Similarity=0.465 Sum_probs=27.4
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT 305 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~ 305 (369)
|+.++++.|++||||||++..++..+ .+.+++.|.
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 56789999999999999988887643 455666654
No 407
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.66 E-value=0.0025 Score=51.74 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=26.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG 307 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~ 307 (369)
.++.+.|++||||||+++.+. .+...+..|++.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di~ 48 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI--KRKHRLVGDDNV 48 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeHH
Confidence 678999999999999999987 344566666643
No 408
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.64 E-value=0.0032 Score=64.49 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=29.5
Q ss_pred cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCC
Q psy4598 270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRD 304 (369)
Q Consensus 270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D 304 (369)
+.|+-|+|.||||||||.+|++++..++..++..|
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~ 291 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLD 291 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence 44678999999999999999999999876666544
No 409
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.63 E-value=0.013 Score=51.55 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=24.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCc
Q psy4598 275 LIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDT 305 (369)
Q Consensus 275 Ill~G~pGSGKSTla~~L~~~-----~~~~~i~~D~ 305 (369)
+++.|+||||||+++.+++.. ..+.+++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 689999999999999987653 2566777643
No 410
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.61 E-value=0.034 Score=48.35 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=51.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCcchh--------------------HHHHHHHHHHHHhCCCcEEE
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDTLGS--------------------WQKCVSVMKAALDSGLSVVV 328 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~~~~--------------------~~~~~~~~~~~l~~g~~vIi 328 (369)
.++.+.|++|||||||.+.++-.. |-+.++...+.. .++....++..+..-..+++
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~illl 106 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLIL 106 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEEE
Confidence 578999999999999999998653 334443322110 12334556666677778889
Q ss_pred eCCC--CCHHHHHHHHHHHHhc
Q psy4598 329 DNTN--PDKESRHRYIEAAKQH 348 (369)
Q Consensus 329 D~tn--~~~~~r~~~~~la~~~ 348 (369)
|-+. ++...+..+.++.++.
T Consensus 107 DEP~~~LD~~~~~~l~~~l~~~ 128 (163)
T cd03216 107 DEPTAALTPAEVERLFKVIRRL 128 (163)
T ss_pred ECCCcCCCHHHHHHHHHHHHHH
Confidence 9654 6888888887766543
No 411
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.60 E-value=0.0017 Score=57.42 Aligned_cols=29 Identities=17% Similarity=0.414 Sum_probs=24.4
Q ss_pred cccccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598 268 KAALDSVLIMIGSQGSGKSSFVSTYLKPL 296 (369)
Q Consensus 268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~ 296 (369)
+..++.++.++|++||||||+.+.+...+
T Consensus 2 ~~~~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 2 NKTMIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CCCCceEEEEECCCCChHHHHHHHHHHHH
Confidence 34466799999999999999999998654
No 412
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.60 E-value=0.014 Score=62.47 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=29.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcch
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTLG 307 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~~ 307 (369)
+.+|+|+||+|+||||....|+..+ .+.+++.|.++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 4799999999999999999988543 35678888875
No 413
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.012 Score=57.28 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=25.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDT 305 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~ 305 (369)
.+++|.||+||||||+-+.++--. |-..|+...
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~ 66 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRD 66 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence 588999999999999999998542 445555443
No 414
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.59 E-value=0.012 Score=57.43 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=28.9
Q ss_pred ccccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598 269 AALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT 305 (369)
Q Consensus 269 ~~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~ 305 (369)
...+.+|-++|+|||||||+...|...+ ++.+|+.|.
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3456799999999999999999886643 466676665
No 415
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.59 E-value=0.013 Score=61.72 Aligned_cols=91 Identities=13% Similarity=0.162 Sum_probs=54.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcEE------Ee------------------CCcc----------hhHHHHHHHH
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTT------VN------------------RDTL----------GSWQKCVSVM 316 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~------i~------------------~D~~----------~~~~~~~~~~ 316 (369)
.+..+||+|++|+||||+|+.|++.+++.. ++ .|.+ ...+.+.+.+
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~ 116 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKA 116 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHH
Confidence 356789999999999999999999876511 00 0111 1112222222
Q ss_pred HHHHh--CCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598 317 KAALD--SGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNISK 361 (369)
Q Consensus 317 ~~~l~--~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~~~ 361 (369)
...-. ..+.+|||-. .++....+.+++...+..-.+.+|.+....
T Consensus 117 ~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 117 VYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred HhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 21111 2347788854 456777778888777755556666665544
No 416
>PRK12377 putative replication protein; Provisional
Probab=96.58 E-value=0.0082 Score=56.17 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=44.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch-hHHH------HHHHHHHHHhCCCcEEEeCCC---CCHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG-SWQK------CVSVMKAALDSGLSVVVDNTN---PDKES 337 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~-~~~~------~~~~~~~~l~~g~~vIiD~tn---~~~~~ 337 (369)
.-++|.|+||+|||++|.+++..+ .+.+++..++. .... ......+.+..-..+|||..+ .+.+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~~ 181 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKNE 181 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHH
Confidence 357999999999999999998764 34566654432 1111 112334445555678888773 34455
Q ss_pred HHHHHHHH
Q psy4598 338 RHRYIEAA 345 (369)
Q Consensus 338 r~~~~~la 345 (369)
...+..+.
T Consensus 182 ~~~l~~ii 189 (248)
T PRK12377 182 QVVLNQII 189 (248)
T ss_pred HHHHHHHH
Confidence 55554444
No 417
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.58 E-value=0.031 Score=49.53 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=47.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc--------------------------ch--------hHHHHHHHHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT--------------------------LG--------SWQKCVSVMKA 318 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~--------------------------~~--------~~~~~~~~~~~ 318 (369)
.++.+.|++||||||+.+.+....+-+.+.... +. ..++....++.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~lara 101 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASE 101 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHH
Confidence 578999999999999999986332222222110 00 01233455666
Q ss_pred HHhC--CCcEEEeCC--CCCHHHHHHHHHHHHh
Q psy4598 319 ALDS--GLSVVVDNT--NPDKESRHRYIEAAKQ 347 (369)
Q Consensus 319 ~l~~--g~~vIiD~t--n~~~~~r~~~~~la~~ 347 (369)
.+.. ...+++|-+ +++...+..+.+..++
T Consensus 102 l~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~ 134 (176)
T cd03238 102 LFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG 134 (176)
T ss_pred HhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 6666 678889854 5678888877766554
No 418
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=96.58 E-value=0.0071 Score=57.14 Aligned_cols=48 Identities=25% Similarity=0.235 Sum_probs=37.5
Q ss_pred ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHH-CCcEEEEEecC
Q psy4598 25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLD-DGYKLVIFTNQ 79 (369)
Q Consensus 25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~-~G~~i~i~TNq 79 (369)
..+++||+||||.... ..+++-. +.|.+.++|++|.+ .|..++|+|-.
T Consensus 14 ~~li~~D~DGTLl~~~------~~p~~~~-i~~~~~~~L~~L~~~~g~~v~i~SGR 62 (266)
T PRK10187 14 NYAWFFDLDGTLAEIK------PHPDQVV-VPDNILQGLQLLATANDGALALISGR 62 (266)
T ss_pred CEEEEEecCCCCCCCC------CCccccc-CCHHHHHHHHHHHhCCCCcEEEEeCC
Confidence 4688999999998532 2333333 57999999999998 79999999973
No 419
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.58 E-value=0.02 Score=56.64 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCC
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLN 297 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~ 297 (369)
.+..+++.||||+||||+|+.+++.++
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 456789999999999999999998764
No 420
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.57 E-value=0.018 Score=61.49 Aligned_cols=91 Identities=13% Similarity=0.214 Sum_probs=54.2
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcE------------------------EEeCCcc--hhHHHHHHHHHHHH----
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYT------------------------TVNRDTL--GSWQKCVSVMKAAL---- 320 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~------------------------~i~~D~~--~~~~~~~~~~~~~l---- 320 (369)
.+..+||+|++|+||||+++.|++.+++. ++..|.. +..+.+.+.+....
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~ 116 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPV 116 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccc
Confidence 35678999999999999999999876542 1211111 11112222222211
Q ss_pred -hCCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598 321 -DSGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNISK 361 (369)
Q Consensus 321 -~~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~~~ 361 (369)
...+.+|||.. .++....+.+++...+..-.+++|......
T Consensus 117 ~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 117 DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred cCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 12457788864 456666777888877765556666655443
No 421
>PRK08116 hypothetical protein; Validated
Probab=96.57 E-value=0.012 Score=55.72 Aligned_cols=89 Identities=20% Similarity=0.241 Sum_probs=49.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc-hhHHH--------HHHHHHHHHhCCCcEEEeCCC---CCHH
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL-GSWQK--------CVSVMKAALDSGLSVVVDNTN---PDKE 336 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~-~~~~~--------~~~~~~~~l~~g~~vIiD~tn---~~~~ 336 (369)
-++|.|+||+|||+||.+++..+ .+.+++...+ ..+.. -...+.+.+.....+|||... .+.+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t~~ 195 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDTEW 195 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCCHH
Confidence 47999999999999999998753 4556665443 11111 111233444444567778763 3445
Q ss_pred HHHHHHHHHHh---cCCeEEEEEEeCCHHH
Q psy4598 337 SRHRYIEAAKQ---HGVRCIAVHMNISKEH 363 (369)
Q Consensus 337 ~r~~~~~la~~---~~~~v~~v~l~~~~e~ 363 (369)
....+..+... .+.+ .++--+.+++.
T Consensus 196 ~~~~l~~iin~r~~~~~~-~IiTsN~~~~e 224 (268)
T PRK08116 196 AREKVYNIIDSRYRKGLP-TIVTTNLSLEE 224 (268)
T ss_pred HHHHHHHHHHHHHHCCCC-EEEECCCCHHH
Confidence 55555444332 2333 34444555544
No 422
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.56 E-value=0.0017 Score=52.63 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q psy4598 275 LIMIGSQGSGKSSFVSTYLKPL 296 (369)
Q Consensus 275 Ill~G~pGSGKSTla~~L~~~~ 296 (369)
|+|.|+||+|||++++.|++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999988654
No 423
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.55 E-value=0.015 Score=61.38 Aligned_cols=91 Identities=12% Similarity=0.153 Sum_probs=56.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcE--------------------------EEeCCc-c--hhHHHHHHHHHHHHh
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYT--------------------------TVNRDT-L--GSWQKCVSVMKAALD 321 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~--------------------------~i~~D~-~--~~~~~~~~~~~~~l~ 321 (369)
.+..++|.|++|+||||+|+.+++.+++. .++... . ...+.+.+.+...-.
T Consensus 37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~ 116 (647)
T PRK07994 37 LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPA 116 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhh
Confidence 45678999999999999999999987652 122211 1 112333333322212
Q ss_pred --CCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598 322 --SGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNISK 361 (369)
Q Consensus 322 --~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~~~ 361 (369)
..+.+|||.. .++......+++...+-.-.+.++......
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~ 159 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCc
Confidence 2347788854 457778888888888765556666654443
No 424
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.54 E-value=0.03 Score=50.04 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=22.6
Q ss_pred cccEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598 270 ALDSVLIMIGSQGSGKSSFVSTYLKP 295 (369)
Q Consensus 270 ~~~~lIll~G~pGSGKSTla~~L~~~ 295 (369)
+.-.+++++|++|||||||.+.+...
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhh
Confidence 34468999999999999999999875
No 425
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.53 E-value=0.0018 Score=64.68 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=28.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT 305 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~ 305 (369)
|.-|+|+||||+|||++|+.|++.++..++..|.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 4678999999999999999999998766666554
No 426
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.53 E-value=0.02 Score=53.88 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=26.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCC
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRD 304 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D 304 (369)
..++++.|+||||||+++.+++.. ..+.+++.+
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 368999999999999999998653 246667654
No 427
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.52 E-value=0.044 Score=47.93 Aligned_cols=91 Identities=16% Similarity=0.239 Sum_probs=56.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCcch------------------------h--------HHHHHHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDTLG------------------------S--------WQKCVSVM 316 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~~~------------------------~--------~~~~~~~~ 316 (369)
.++.+.|++||||||+.+.++-.. |-..++...+. . .++....+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~la 108 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAIA 108 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHHH
Confidence 578999999999999999998653 33334332210 0 01223445
Q ss_pred HHHHhCCCcEEEeCC--CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHH
Q psy4598 317 KAALDSGLSVVVDNT--NPDKESRHRYIEAAKQHGVRCIAVHMNISKEH 363 (369)
Q Consensus 317 ~~~l~~g~~vIiD~t--n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~ 363 (369)
+..+..-..+++|-+ .++...+..+.++.++..-...++...=+.+.
T Consensus 109 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 157 (171)
T cd03228 109 RALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLST 157 (171)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 556666778889965 45788888887776654323334444433333
No 428
>KOG3078|consensus
Probab=96.52 E-value=0.0081 Score=55.34 Aligned_cols=92 Identities=12% Similarity=0.209 Sum_probs=61.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH--------H---------------HHHHHHHHHHhC---CC
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW--------Q---------------KCVSVMKAALDS---GL 324 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~--------~---------------~~~~~~~~~l~~---g~ 324 (369)
..-.++.|+|||||+|+|..+.+.+++.||++-++ +.. . .......+.+.. ..
T Consensus 15 ~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~~ 94 (235)
T KOG3078|consen 15 GVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQK 94 (235)
T ss_pred ceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcccccccc
Confidence 35578999999999999999999999998876443 321 0 011122222333 35
Q ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHH
Q psy4598 325 SVVVDNTNPDKESRHRYIEAAKQHGV-RCIAVHMNISKEHAKHN 367 (369)
Q Consensus 325 ~vIiD~tn~~~~~r~~~~~la~~~~~-~v~~v~l~~~~e~~~~R 367 (369)
.+++|..-.+...-.. +..+++ .-.++.+.+|.+.+.+|
T Consensus 95 ~~ildg~Prt~~qa~~----l~~~~~~~d~Vi~l~vp~~~L~~r 134 (235)
T KOG3078|consen 95 GFILDGFPRTVQQAEE----LLDRIAQIDLVINLKVPEEVLVDR 134 (235)
T ss_pred ccccCCCCcchHHHHH----HHHccCCcceEEEecCCHHHHHHH
Confidence 7888877655443333 344444 44689999999998886
No 429
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.52 E-value=0.033 Score=53.48 Aligned_cols=34 Identities=24% Similarity=0.473 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCcc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDTL 306 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~~ 306 (369)
.+.+++|++||||||+.+.+-+.. |-+.++..++
T Consensus 55 eIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di 92 (386)
T COG4175 55 EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDI 92 (386)
T ss_pred eEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcch
Confidence 578999999999999999987753 5566666554
No 430
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.52 E-value=0.022 Score=52.22 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=25.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDT 305 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~ 305 (369)
..++++.|+|||||||++..++.. .++.+++.+.
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 368999999999999999876532 2466777654
No 431
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.51 E-value=0.038 Score=48.18 Aligned_cols=82 Identities=22% Similarity=0.291 Sum_probs=55.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC----Cc---------EEEeCCcc------h-------------hHHHHHHHHHHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL----NY---------TTVNRDTL------G-------------SWQKCVSVMKAAL 320 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~----~~---------~~i~~D~~------~-------------~~~~~~~~~~~~l 320 (369)
.++.++|++||||||+.+.++-.. |. .++.++.. . ..++....++..+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~ 107 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLL 107 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999998753 22 23333321 0 0123345566666
Q ss_pred hCCCcEEEeCC--CCCHHHHHHHHHHHHhcCCeEEE
Q psy4598 321 DSGLSVVVDNT--NPDKESRHRYIEAAKQHGVRCIA 354 (369)
Q Consensus 321 ~~g~~vIiD~t--n~~~~~r~~~~~la~~~~~~v~~ 354 (369)
.....+++|-+ +++...+..+.++.++.+..+.+
T Consensus 108 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiii 143 (166)
T cd03223 108 HKPKFVFLDEATSALDEESEDRLYQLLKELGITVIS 143 (166)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEE
Confidence 77778889964 56888888888888877643333
No 432
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.51 E-value=0.017 Score=56.11 Aligned_cols=34 Identities=12% Similarity=0.305 Sum_probs=25.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT 305 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~ 305 (369)
-.++.+.|+||||||||+..++... .+.+|+...
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~ 93 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 93 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence 3688999999999999988876532 456776543
No 433
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.50 E-value=0.015 Score=59.92 Aligned_cols=88 Identities=11% Similarity=0.190 Sum_probs=52.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEEe-----------------------CCcc----------hhHHHHHHHHHH
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN-----------------------RDTL----------GSWQKCVSVMKA 318 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~-----------------------~D~~----------~~~~~~~~~~~~ 318 (369)
+..++|+|+||+||||+|+.+++.+++.... .|.+ ...+.+.+.+..
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~ 122 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEY 122 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHh
Confidence 4678999999999999999999987653210 1111 012222222222
Q ss_pred H--HhCCCcEEEeCCC-CCHHHHHHHHHHHHhcCCeEEEEEEeC
Q psy4598 319 A--LDSGLSVVVDNTN-PDKESRHRYIEAAKQHGVRCIAVHMNI 359 (369)
Q Consensus 319 ~--l~~g~~vIiD~tn-~~~~~r~~~~~la~~~~~~v~~v~l~~ 359 (369)
. ....+.+|||... ++......+++...+..-.+.+|....
T Consensus 123 ~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTt 166 (507)
T PRK06645 123 KPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166 (507)
T ss_pred ccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeC
Confidence 1 1234578888754 355566667766666555555555543
No 434
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.50 E-value=0.011 Score=53.19 Aligned_cols=81 Identities=19% Similarity=0.279 Sum_probs=44.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchhHHHHHHHH-------HHH--------------HhCCCcE
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGSWQKCVSVM-------KAA--------------LDSGLSV 326 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~~~~~~~~~-------~~~--------------l~~g~~v 326 (369)
.++++.|+|||||||+.+.+.+.+ .+..+.... +....+.+.+ ... +.....+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~-~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN-KAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH-HHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH-HHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEE
Confidence 578899999999999999887643 233333322 1111111110 000 2334567
Q ss_pred EEe-CCCCCHHHHHHHHHHHHhcCCeEEE
Q psy4598 327 VVD-NTNPDKESRHRYIEAAKQHGVRCIA 354 (369)
Q Consensus 327 IiD-~tn~~~~~r~~~~~la~~~~~~v~~ 354 (369)
||| +...+......+...+...+..+++
T Consensus 98 iVDEasmv~~~~~~~ll~~~~~~~~klil 126 (196)
T PF13604_consen 98 IVDEASMVDSRQLARLLRLAKKSGAKLIL 126 (196)
T ss_dssp EESSGGG-BHHHHHHHHHHS-T-T-EEEE
T ss_pred EEecccccCHHHHHHHHHHHHhcCCEEEE
Confidence 787 4555777777778877776765443
No 435
>PRK08727 hypothetical protein; Validated
Probab=96.50 E-value=0.014 Score=53.94 Aligned_cols=57 Identities=16% Similarity=0.178 Sum_probs=34.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCC
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTN 332 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn 332 (369)
..++|.|++|||||+++.+++... .+.+++.+.+. .....+.+.+..-..+|||...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~---~~~~~~~~~l~~~dlLiIDDi~ 103 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA---GRLRDALEALEGRSLVALDGLE 103 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh---hhHHHHHHHHhcCCEEEEeCcc
Confidence 348999999999999999986542 34566654422 1111222333444467777643
No 436
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.48 E-value=0.018 Score=58.09 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=28.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc-------CCcEEEeCCcch
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKP-------LNYTTVNRDTLG 307 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~-------~~~~~i~~D~~~ 307 (369)
..+|+|+||+|+||||++..|+.. ..+.+|+.|.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 358999999999999988777542 247889999864
No 437
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.47 E-value=0.019 Score=59.38 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=55.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcE--------------------------EEeCC-cc--hhHHHHHHHHHHHHh
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYT--------------------------TVNRD-TL--GSWQKCVSVMKAALD 321 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~--------------------------~i~~D-~~--~~~~~~~~~~~~~l~ 321 (369)
.+..+++.|+||+||||+|+.+++.+++. .++.. .. ...+.+.+.+...-.
T Consensus 37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~ 116 (509)
T PRK14958 37 LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPT 116 (509)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccc
Confidence 45678999999999999999999977542 11211 00 112222222222222
Q ss_pred --CCCcEEEeCCC-CCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598 322 --SGLSVVVDNTN-PDKESRHRYIEAAKQHGVRCIAVHMNISK 361 (369)
Q Consensus 322 --~g~~vIiD~tn-~~~~~r~~~~~la~~~~~~v~~v~l~~~~ 361 (369)
..+.+|||... ++......+++...+..-.+.+|....+.
T Consensus 117 ~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~ 159 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDH 159 (509)
T ss_pred cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECCh
Confidence 23477888654 46777777888777765556666665543
No 438
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=96.47 E-value=0.0034 Score=66.88 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=32.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
...|.+.||+||||||+++.|++++++.+++++.+
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~ 476 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGAL 476 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHh
Confidence 45789999999999999999999999999999876
No 439
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.46 E-value=0.02 Score=52.37 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=26.8
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhcc------CCcEEEeCCc
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKP------LNYTTVNRDT 305 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~------~~~~~i~~D~ 305 (369)
...++++.|+||||||+++.+++.. .++.+++.+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 3468999999999999999986532 3577888765
No 440
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.46 E-value=0.0083 Score=54.41 Aligned_cols=60 Identities=28% Similarity=0.421 Sum_probs=44.5
Q ss_pred CCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598 22 CNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK 101 (369)
Q Consensus 22 ~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~ 101 (369)
.+..+++|.|+||||+.. + .||.. +.+.|.+|++.||.|+.+|.++ ...+..+-+
T Consensus 4 ~~~~~lIFtDlD~TLl~~-~--------ye~~p----A~pv~~el~d~G~~Vi~~SSKT------------~aE~~~l~~ 58 (274)
T COG3769 4 IQMPLLIFTDLDGTLLPH-S--------YEWQP----AAPVLLELKDAGVPVILCSSKT------------RAEMLYLQK 58 (274)
T ss_pred cccceEEEEcccCcccCC-C--------CCCCc----cchHHHHHHHcCCeEEEeccch------------HHHHHHHHH
Confidence 356788999999999962 2 34443 6778999999999999999853 223455667
Q ss_pred HcCCC
Q psy4598 102 SLNVP 106 (369)
Q Consensus 102 ~l~i~ 106 (369)
.+|++
T Consensus 59 ~l~v~ 63 (274)
T COG3769 59 SLGVQ 63 (274)
T ss_pred hcCCC
Confidence 78774
No 441
>KOG0739|consensus
Probab=96.46 E-value=0.0054 Score=58.20 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=36.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEEe---CCcchhH----HHHHHHHHHHHhCCC
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVN---RDTLGSW----QKCVSVMKAALDSGL 324 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i~---~D~~~~~----~~~~~~~~~~l~~g~ 324 (369)
-|+|.||||+|||+||++.+...+..+++ +|.+..| +++.+.+-+..++.+
T Consensus 168 giLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~k 225 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENK 225 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 47999999999999999999987654443 4444333 556666656555555
No 442
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.46 E-value=0.021 Score=53.55 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=42.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCcch-----hHHHHHHHHHHHHhCCCcEEEeCCC
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDTLG-----SWQKCVSVMKAALDSGLSVVVDNTN 332 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~-----~~~~~~~~~~~~l~~g~~vIiD~tn 332 (369)
.-.++++.|+||||||+|+.++... .++.+++.+.-. .+....-......+.+...++|...
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~ 93 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFL 93 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHHhhcCCEEEEEccc
Confidence 3468999999999999999998764 257888887742 1111112223566778888887654
No 443
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.016 Score=56.39 Aligned_cols=79 Identities=14% Similarity=0.232 Sum_probs=50.2
Q ss_pred cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCC--c-chhH----HHHHHHHHHHHhCCCc-EE-E------------
Q psy4598 270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRD--T-LGSW----QKCVSVMKAALDSGLS-VV-V------------ 328 (369)
Q Consensus 270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D--~-~~~~----~~~~~~~~~~l~~g~~-vI-i------------ 328 (369)
..|+=|+|.||||+|||-+|++.+.+.++.+|..- . +..| .++.+.+-+.++...+ +| +
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d 262 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFD 262 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhccccc
Confidence 34666899999999999999999999988776532 2 2222 3344444444444433 33 2
Q ss_pred eCCCCCHHHHHHHHHHHHhc
Q psy4598 329 DNTNPDKESRHRYIEAAKQH 348 (369)
Q Consensus 329 D~tn~~~~~r~~~~~la~~~ 348 (369)
+.|..+++-.+.++++..+.
T Consensus 263 ~~t~gDrEVQRTmleLL~ql 282 (406)
T COG1222 263 SGTSGDREVQRTMLELLNQL 282 (406)
T ss_pred CCCCchHHHHHHHHHHHHhc
Confidence 23455666667777776554
No 444
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.45 E-value=0.018 Score=52.63 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=28.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDT 305 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~ 305 (369)
-.++++.|+||||||+++.+++.. .++.+++.+.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~ 61 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEG 61 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 468999999999999999999853 3688898884
No 445
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.45 E-value=0.013 Score=59.73 Aligned_cols=79 Identities=16% Similarity=0.328 Sum_probs=49.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC----------CcEEEeCCcch-h-------HHHHHHHHHHHHhCCCcEEEeCCCC
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL----------NYTTVNRDTLG-S-------WQKCVSVMKAALDSGLSVVVDNTNP 333 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~----------~~~~i~~D~~~-~-------~~~~~~~~~~~l~~g~~vIiD~tn~ 333 (369)
|-++.++||||+|||||.+.|.+++ ++.+++.-.-+ + ...+...+. ++.=....||+.+.
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~Dl~~miDvaK--IaDLVlLlIdgnfG 146 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSDLHQMIDVAK--IADLVLLLIDGNFG 146 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHHHHHHHhHHH--hhheeEEEeccccC
Confidence 4455599999999999999999874 23333333221 1 112222222 11122345788777
Q ss_pred CHHHHHHHHHHHHhcCCeE
Q psy4598 334 DKESRHRYIEAAKQHGVRC 352 (369)
Q Consensus 334 ~~~~r~~~~~la~~~~~~v 352 (369)
-.-.-..+++++..||.+-
T Consensus 147 fEMETmEFLnil~~HGmPr 165 (1077)
T COG5192 147 FEMETMEFLNILISHGMPR 165 (1077)
T ss_pred ceehHHHHHHHHhhcCCCc
Confidence 6666788999999999863
No 446
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.031 Score=57.33 Aligned_cols=89 Identities=8% Similarity=0.084 Sum_probs=53.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCc--------------------------EEEeCCcch---hHHHHHHHHHHH--H
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNY--------------------------TTVNRDTLG---SWQKCVSVMKAA--L 320 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~--------------------------~~i~~D~~~---~~~~~~~~~~~~--l 320 (369)
+..++|+|++|+||||+|+.+++.+++ ..++...-. ..+.+.+.+... .
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~ 114 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPIS 114 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhcccc
Confidence 567899999999999999999985432 222221111 122222222221 1
Q ss_pred hCCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeCC
Q psy4598 321 DSGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNIS 360 (369)
Q Consensus 321 ~~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~~ 360 (369)
...+.+|||.. .++......+++...+-.-.+.+|.....
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte 155 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTE 155 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 34457888874 44666677777777765555555555443
No 447
>KOG0730|consensus
Probab=96.44 E-value=0.0078 Score=62.50 Aligned_cols=35 Identities=11% Similarity=0.225 Sum_probs=28.7
Q ss_pred ccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeC
Q psy4598 269 AALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNR 303 (369)
Q Consensus 269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~ 303 (369)
-..|+=|++-||||||||++|++++...++.+|+-
T Consensus 465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv 499 (693)
T KOG0730|consen 465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV 499 (693)
T ss_pred CCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec
Confidence 34478899999999999999999999876555543
No 448
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.026 Score=49.08 Aligned_cols=90 Identities=20% Similarity=0.338 Sum_probs=54.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCC----c----EEEeCCcc---------h---------------hHHH------H
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLN----Y----TTVNRDTL---------G---------------SWQK------C 312 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~----~----~~i~~D~~---------~---------------~~~~------~ 312 (369)
|-++|+++||+|+||-|+.......+. . .+|+...- . .|+. +
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi 83 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI 83 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence 458999999999999999877765531 1 12332211 0 1221 1
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598 313 VSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367 (369)
Q Consensus 313 ~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R 367 (369)
-..+...+..|..||+... |..+-+.-+.+. ...+|.+.++.++..+|
T Consensus 84 p~eId~wl~~G~vvl~NgS------Ra~Lp~arrry~-~Llvv~ita~p~VLaqR 131 (192)
T COG3709 84 PAEIDLWLAAGDVVLVNGS------RAVLPQARRRYP-QLLVVCITASPEVLAQR 131 (192)
T ss_pred chhHHHHHhCCCEEEEecc------HhhhHHHHHhhh-cceeEEEecCHHHHHHH
Confidence 2456677888977776543 222222112222 45688889999988776
No 449
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=96.43 E-value=0.01 Score=62.59 Aligned_cols=59 Identities=24% Similarity=0.306 Sum_probs=44.5
Q ss_pred CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL 103 (369)
Q Consensus 24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l 103 (369)
..|++++|+||||..... ...+...++|++|+++|+.++++|-.+ ...+..+++.+
T Consensus 415 ~~KLIfsDLDGTLLd~d~------------~i~~~t~eAL~~L~ekGI~~VIATGRs------------~~~i~~l~~~L 470 (694)
T PRK14502 415 FKKIVYTDLDGTLLNPLT------------YSYSTALDALRLLKDKELPLVFCSAKT------------MGEQDLYRNEL 470 (694)
T ss_pred eeeEEEEECcCCCcCCCC------------ccCHHHHHHHHHHHHcCCeEEEEeCCC------------HHHHHHHHHHc
Confidence 358999999999997542 135667899999999999999999632 12356667777
Q ss_pred CCC
Q psy4598 104 NVP 106 (369)
Q Consensus 104 ~i~ 106 (369)
++.
T Consensus 471 gl~ 473 (694)
T PRK14502 471 GIK 473 (694)
T ss_pred CCC
Confidence 763
No 450
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.42 E-value=0.032 Score=58.49 Aligned_cols=91 Identities=13% Similarity=0.156 Sum_probs=57.0
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcEE---------------E------eCCcc----------hhHHHHHHHHHHH
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTT---------------V------NRDTL----------GSWQKCVSVMKAA 319 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~---------------i------~~D~~----------~~~~~~~~~~~~~ 319 (369)
.+..++|.|++|+||||+|+.+++.+++.. + +.|.+ ...+.+.+.+...
T Consensus 34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~ 113 (584)
T PRK14952 34 INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYA 113 (584)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhh
Confidence 456789999999999999999998765421 0 01111 1122222233222
Q ss_pred --HhCCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598 320 --LDSGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNISK 361 (369)
Q Consensus 320 --l~~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~~~ 361 (369)
....+.+|||.. .++......+++...+..-.+++|.+....
T Consensus 114 P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 114 PAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred hhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 234567888865 457777788888888766666666665443
No 451
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.42 E-value=0.0028 Score=53.50 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=23.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNY 298 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~ 298 (369)
.+|+|.|..||||||+++.+++.++.
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 58999999999999999999998653
No 452
>KOG0733|consensus
Probab=96.42 E-value=0.0094 Score=61.50 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=28.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCC
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRD 304 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D 304 (369)
|+=|+|.||||||||.||++++.++++.+++-.
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~vPf~~is 255 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELGVPFLSIS 255 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcCCceEeec
Confidence 456799999999999999999999987776644
No 453
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.41 E-value=0.0038 Score=53.78 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=26.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 306 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 306 (369)
.-|+|+|+||+||||+|..|.++ ++.+++-|..
T Consensus 15 ~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD~v 47 (149)
T cd01918 15 IGVLITGPSGIGKSELALELIKR-GHRLVADDRV 47 (149)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCeEEECCEE
Confidence 46899999999999999999886 3456655543
No 454
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.41 E-value=0.0038 Score=64.76 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=32.2
Q ss_pred cccccEEEEEEcCCCCcHHHHHHHHhccC-CcEEEeCCcc
Q psy4598 268 KAALDSVLIMIGSQGSGKSSFVSTYLKPL-NYTTVNRDTL 306 (369)
Q Consensus 268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~-~~~~i~~D~~ 306 (369)
+...+.+|.+.|++||||||+++.|+..+ ....|+.|.+
T Consensus 61 ~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 61 KNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred cCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 34456899999999999999999999876 4567887776
No 455
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.41 E-value=0.0027 Score=65.56 Aligned_cols=30 Identities=27% Similarity=0.554 Sum_probs=25.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEE
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTV 301 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i 301 (369)
..+++|+|||||||||..+.|++.+++.++
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 459999999999999999999998764433
No 456
>PRK04328 hypothetical protein; Provisional
Probab=96.40 E-value=0.025 Score=52.83 Aligned_cols=58 Identities=21% Similarity=0.254 Sum_probs=38.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCcchhHHHHHHH-------HHHHHhCCCcEEEeCC
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDTLGSWQKCVSV-------MKAALDSGLSVVVDNT 331 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~~~~~~~~~-------~~~~l~~g~~vIiD~t 331 (369)
..++++.|+||||||+++.++... ..+.+++.+.-. +.+.+. ..+.++.+...++|..
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~--~~i~~~~~~~g~d~~~~~~~~~l~iid~~ 92 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHP--VQVRRNMRQFGWDVRKYEEEGKFAIVDAF 92 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCH--HHHHHHHHHcCCCHHHHhhcCCEEEEecc
Confidence 468999999999999999887653 256788876532 222222 2344566677778764
No 457
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.39 E-value=0.0096 Score=61.81 Aligned_cols=91 Identities=11% Similarity=0.128 Sum_probs=53.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcE--------------------------EEeC-Ccc--hhHHHHHHHHHHHH-
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYT--------------------------TVNR-DTL--GSWQKCVSVMKAAL- 320 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~--------------------------~i~~-D~~--~~~~~~~~~~~~~l- 320 (369)
.+..++|+|+||+||||+|+.+++.+++. .++. ... ...+.+.+.+...-
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~ 116 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPS 116 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhh
Confidence 34678999999999999999999866431 1111 111 11223333332221
Q ss_pred -hCCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598 321 -DSGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNISK 361 (369)
Q Consensus 321 -~~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~~~ 361 (369)
...+.+|||.. ..+......+++...+..-.+.+|......
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~ 159 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDY 159 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECCh
Confidence 23447788864 346667777888777755455555555543
No 458
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=96.39 E-value=0.018 Score=50.61 Aligned_cols=121 Identities=18% Similarity=0.222 Sum_probs=66.9
Q ss_pred eEEEEecCCceeecCCCCC-----CCCCcccc-------cc----------ccccHHHHHHHHHHCCcEEEEEecCCCcC
Q psy4598 26 KIASFDLDGTLITTKSGKV-----FPVDTHDW-------KL----------LFSNIESVLKQYLDDGYKLVIFTNQGAIG 83 (369)
Q Consensus 26 k~~~fDlDgTLi~~~sg~~-----~~~~~~d~-------~~----------~~p~v~~~L~~L~~~G~~i~i~TNq~gi~ 83 (369)
=.+.||+|.|+.-+..|.. |..+..|+ .. ...-+.+.+..-..+|-.|+++|-. .
T Consensus 64 i~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGR---t 140 (237)
T COG3700 64 IAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGR---T 140 (237)
T ss_pred eeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecC---C
Confidence 3578999999998866432 22233333 11 1112344444445689999999953 3
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCC
Q psy4598 84 RKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKK 161 (369)
Q Consensus 84 ~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~ 161 (369)
+|+.. ... ..+.+.+.|. .-+.++. -||+|+-+...-- -.+..-.++.||+-
T Consensus 141 ~gk~d--~vs---k~Lak~F~i~~m~pv~f~G-----dk~k~~qy~Kt~~------i~~~~~~IhYGDSD---------- 194 (237)
T COG3700 141 PGKTD--TVS---KTLAKNFHITNMNPVIFAG-----DKPKPGQYTKTQW------IQDKNIRIHYGDSD---------- 194 (237)
T ss_pred CCccc--ccc---hhHHhhcccCCCcceeecc-----CCCCcccccccHH------HHhcCceEEecCCc----------
Confidence 44321 111 1122334431 1223332 3555555543211 12334577899997
Q ss_pred CCCCCcccHHHHHhCCCCcc
Q psy4598 162 KKDFACTDHLFAFNLNLAFF 181 (369)
Q Consensus 162 ~~d~s~~D~~~A~n~Gi~f~ 181 (369)
.||.+|+.+|++.+
T Consensus 195 ------~Di~AAkeaG~RgI 208 (237)
T COG3700 195 ------NDITAAKEAGARGI 208 (237)
T ss_pred ------hhhhHHHhcCccce
Confidence 89999999999985
No 459
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.39 E-value=0.03 Score=58.09 Aligned_cols=91 Identities=14% Similarity=0.192 Sum_probs=53.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcEE--------------------------EeCC-cc--hhHHHHHHHHHHHH-
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTT--------------------------VNRD-TL--GSWQKCVSVMKAAL- 320 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~--------------------------i~~D-~~--~~~~~~~~~~~~~l- 320 (369)
.+..++|+|+||+||||+|+.+++.+++.. ++.. .. ...+.+...+...-
T Consensus 37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~ 116 (527)
T PRK14969 37 LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPT 116 (527)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcc
Confidence 356789999999999999999998875421 1110 00 01122222222111
Q ss_pred -hCCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598 321 -DSGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNISK 361 (369)
Q Consensus 321 -~~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~~~ 361 (369)
...+.+|||.. ..+......+++...+..-.+.+|.+..+.
T Consensus 117 ~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~ 159 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (527)
T ss_pred cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCCh
Confidence 22347788864 456666777888877765556666665443
No 460
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.046 Score=46.95 Aligned_cols=75 Identities=21% Similarity=0.365 Sum_probs=50.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCcch-------------------hHHHHHHHHHHHHhCCCcEEEe
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDTLG-------------------SWQKCVSVMKAALDSGLSVVVD 329 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~~~-------------------~~~~~~~~~~~~l~~g~~vIiD 329 (369)
.++.++|++||||||+.+.++-.+ +-..++...+. ..++....++..+.....+++|
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 578999999999999999998754 23334332110 1223345566666777788999
Q ss_pred CC--CCCHHHHHHHHHHHHh
Q psy4598 330 NT--NPDKESRHRYIEAAKQ 347 (369)
Q Consensus 330 ~t--n~~~~~r~~~~~la~~ 347 (369)
-+ +++...+..+.++.++
T Consensus 106 Ep~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 106 EPTSGLDPASRERLLELLRE 125 (157)
T ss_pred CCCcCCCHHHHHHHHHHHHH
Confidence 65 4577777777666554
No 461
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.38 E-value=0.036 Score=51.74 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=26.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDT 305 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~ 305 (369)
-.++++.|++||||||..+.+-+.. |-..|+...
T Consensus 27 gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~ 64 (309)
T COG1125 27 GEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGED 64 (309)
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCee
Confidence 3688999999999999999887653 556665444
No 462
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.38 E-value=0.006 Score=60.87 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=26.2
Q ss_pred cccEEEEEEcCCCCcHHHHHHHHhccCCcEEE
Q psy4598 270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTV 301 (369)
Q Consensus 270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i 301 (369)
..|.-|+|.|+||+|||++|++++...+..++
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i 194 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFI 194 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhCCCEE
Confidence 34567899999999999999999998764443
No 463
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.37 E-value=0.012 Score=56.70 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=31.1
Q ss_pred cccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598 270 ALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG 307 (369)
Q Consensus 270 ~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~ 307 (369)
..|.+|+++|..|+||||-...|+..+ .+.+-..|+||
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFR 179 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFR 179 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHH
Confidence 457899999999999999888887764 45666789986
No 464
>PLN02796 D-glycerate 3-kinase
Probab=96.36 E-value=0.0042 Score=60.57 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=30.6
Q ss_pred cccEEEEEEcCCCCcHHHHHHHHhccCC-----cEEEeCCcc
Q psy4598 270 ALDSVLIMIGSQGSGKSSFVSTYLKPLN-----YTTVNRDTL 306 (369)
Q Consensus 270 ~~~~lIll~G~pGSGKSTla~~L~~~~~-----~~~i~~D~~ 306 (369)
..|.+|-|+|++||||||+++.|...+. ...|+.|.+
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 4568899999999999999999987652 567777776
No 465
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.35 E-value=0.047 Score=48.16 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=49.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCcch------------------------------------hHHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDTLG------------------------------------SWQKC 312 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~~~------------------------------------~~~~~ 312 (369)
.++.+.|++||||||+.+.++... |.+.++...+. ..++.
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qr 105 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQR 105 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHH
Confidence 578999999999999999998753 44444432110 01122
Q ss_pred HHHHHHHHhCCCcEEEeCC--CCCHHHHHHHHHHHHh
Q psy4598 313 VSVMKAALDSGLSVVVDNT--NPDKESRHRYIEAAKQ 347 (369)
Q Consensus 313 ~~~~~~~l~~g~~vIiD~t--n~~~~~r~~~~~la~~ 347 (369)
...++..+.....+++|-+ +++...+..+.++.++
T Consensus 106 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~ 142 (180)
T cd03214 106 VLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRR 142 (180)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 4455666667778889965 4577778777665543
No 466
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.33 E-value=0.033 Score=59.12 Aligned_cols=89 Identities=12% Similarity=0.200 Sum_probs=51.5
Q ss_pred cccEEEEEEcCCCCcHHHHHHHHhccCCcE--------------------------EEeC-Ccc--hhHHHHHHHHHHH-
Q psy4598 270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYT--------------------------TVNR-DTL--GSWQKCVSVMKAA- 319 (369)
Q Consensus 270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~--------------------------~i~~-D~~--~~~~~~~~~~~~~- 319 (369)
..+..++|+|++|+||||+|+.+++.+++. .++. +.. ...+.+...+...
T Consensus 36 rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P 115 (709)
T PRK08691 36 RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAP 115 (709)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhh
Confidence 345789999999999999999999875432 1111 001 1122223222221
Q ss_pred -HhCCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEe
Q psy4598 320 -LDSGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMN 358 (369)
Q Consensus 320 -l~~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~ 358 (369)
....+.+|||.. .++......+++...+..-.+.+|...
T Consensus 116 ~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 116 TAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 233457888874 345555667777776644344444443
No 467
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.33 E-value=0.0062 Score=62.65 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=23.1
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPL 296 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~ 296 (369)
.|.-|+|.||||+|||+++++++..+
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhh
Confidence 35679999999999999999999875
No 468
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.32 E-value=0.051 Score=45.75 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKP 295 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~ 295 (369)
..|.++|++||||||+...+...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 469
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.32 E-value=0.028 Score=61.22 Aligned_cols=91 Identities=10% Similarity=0.104 Sum_probs=56.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEE----------------------------EeCCc-c--hhHHHHHHHHHH--
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTT----------------------------VNRDT-L--GSWQKCVSVMKA-- 318 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~----------------------------i~~D~-~--~~~~~~~~~~~~-- 318 (369)
+..+||.|++|+||||+|+.|++.+++.. |+.-. . ...+.+.+.+..
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p 116 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAP 116 (824)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhch
Confidence 45689999999999999999999876421 11100 0 011122222111
Q ss_pred HHhCCCcEEEeC-CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHH
Q psy4598 319 ALDSGLSVVVDN-TNPDKESRHRYIEAAKQHGVRCIAVHMNISKE 362 (369)
Q Consensus 319 ~l~~g~~vIiD~-tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e 362 (369)
.....+.+|||. -.++....+.+++..++..-.+++|++....+
T Consensus 117 ~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 117 AESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred hcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 113345788885 45577788888998888766677776664443
No 470
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.035 Score=58.58 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=24.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCc
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNY 298 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~ 298 (369)
.+..+++.|++|+||||+|+.+++.+.+
T Consensus 37 i~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 37 VGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3467899999999999999999988765
No 471
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.28 E-value=0.0038 Score=59.28 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC---CcEEEeCCcc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPL---NYTTVNRDTL 306 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~---~~~~i~~D~~ 306 (369)
+|-++|++||||||+++.|+..+ +..+|..|.+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence 46789999999999999999765 4667888876
No 472
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.28 E-value=0.033 Score=50.73 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=27.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc-----------CCcEEEeCCc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKP-----------LNYTTVNRDT 305 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~-----------~~~~~i~~D~ 305 (369)
-.++.+.|+||||||+++..++.. .++.+|+.+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 368899999999999999998643 3567788765
No 473
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.28 E-value=0.01 Score=58.67 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=26.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeC
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNR 303 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~ 303 (369)
|+-++|.|+||+|||+++++++...+..++..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 45689999999999999999999876555443
No 474
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.27 E-value=0.027 Score=54.72 Aligned_cols=33 Identities=12% Similarity=0.325 Sum_probs=26.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT 305 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~ 305 (369)
.++.+.|+||||||||+-.++... .+.+|+...
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 688999999999999999987532 466776643
No 475
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=96.26 E-value=0.03 Score=52.57 Aligned_cols=100 Identities=10% Similarity=0.159 Sum_probs=66.3
Q ss_pred cccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEE-------E----ecC----CCC---
Q psy4598 56 FSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMF-------V----ATQ----YDR--- 117 (369)
Q Consensus 56 ~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~-------~----~~~----~~~--- 117 (369)
.+.+++.++.|.++|.+++.+|.-+ ..++......|+.+|+.|.-- + .+. ...
T Consensus 83 e~~~~~~i~~lq~~~~~v~alT~~~---------~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (252)
T PF11019_consen 83 ESDVPNIINSLQNKGIPVIALTARG---------PNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYD 153 (252)
T ss_pred chhHHHHHHHHHHCCCcEEEEcCCC---------hhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeec
Confidence 4789999999999999999999743 233444445577788865311 1 100 000
Q ss_pred -----CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccH-HHHHhCCCCcc
Q psy4598 118 -----YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDH-LFAFNLNLAFF 181 (369)
Q Consensus 118 -----~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~-~~A~n~Gi~f~ 181 (369)
..=++-.|+..++.+. +-.|++++||.|+..-. .++ .+.++.||.|+
T Consensus 154 GIlft~~~~KG~~L~~fL~~~----~~~pk~IIfIDD~~~nl-------------~sv~~a~k~~~I~f~ 206 (252)
T PF11019_consen 154 GILFTGGQDKGEVLKYFLDKI----NQSPKKIIFIDDNKENL-------------KSVEKACKKSGIDFI 206 (252)
T ss_pred CeEEeCCCccHHHHHHHHHHc----CCCCCeEEEEeCCHHHH-------------HHHHHHHhhCCCcEE
Confidence 1234567999999885 67899999999997211 233 34455889883
No 476
>PLN02423 phosphomannomutase
Probab=96.26 E-value=0.0058 Score=57.04 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=32.6
Q ss_pred ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598 25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN 78 (369)
Q Consensus 25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN 78 (369)
..+++||+||||+.+.. .+.|...++|++|+++ +.++++|-
T Consensus 7 ~~i~~~D~DGTLl~~~~------------~i~~~~~~ai~~l~~~-i~fviaTG 47 (245)
T PLN02423 7 GVIALFDVDGTLTAPRK------------EATPEMLEFMKELRKV-VTVGVVGG 47 (245)
T ss_pred ceEEEEeccCCCcCCCC------------cCCHHHHHHHHHHHhC-CEEEEECC
Confidence 34666999999996532 1567889999999976 99999995
No 477
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.24 E-value=0.027 Score=58.03 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=29.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhcc-------CCcEEEeCCcch
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKP-------LNYTTVNRDTLG 307 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~-------~~~~~i~~D~~~ 307 (369)
..+|.|+|++|+||||++..|+.. ..+.+++.|.++
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 469999999999999999998763 246788988864
No 478
>KOG3120|consensus
Probab=96.23 E-value=0.037 Score=50.30 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=21.8
Q ss_pred ccccHHHHHHHHHHCCc-EEEEEecC
Q psy4598 55 LFSNIESVLKQYLDDGY-KLVIFTNQ 79 (369)
Q Consensus 55 ~~p~v~~~L~~L~~~G~-~i~i~TNq 79 (369)
+.||+.++++.+++.|. -++|+|..
T Consensus 85 ~~Pgmv~lik~~ak~g~~eliIVSDa 110 (256)
T KOG3120|consen 85 IVPGMVRLIKSAAKLGCFELIIVSDA 110 (256)
T ss_pred CCccHHHHHHHHHhCCCceEEEEecC
Confidence 46999999999999985 99999963
No 479
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.22 E-value=0.016 Score=56.36 Aligned_cols=60 Identities=13% Similarity=0.251 Sum_probs=38.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccCCcE--EEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCC
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPLNYT--TVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTN 332 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~~~~--~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn 332 (369)
+..+++.||||+||||+|+.++..++.. .++...+..-..+. .....+..+..++||...
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~-~~l~~l~~~~vl~IDEi~ 112 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLA-AILTNLEEGDVLFIDEIH 112 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHH-HHHHhcccCCEEEEecHh
Confidence 3467899999999999999999987643 33333322211222 222344567778888654
No 480
>PF05729 NACHT: NACHT domain
Probab=96.21 E-value=0.0029 Score=54.14 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKP 295 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~ 295 (369)
+++|.|.||+||||+++.++..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 6899999999999999999865
No 481
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.21 E-value=0.023 Score=59.79 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=24.5
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCc
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNY 298 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~ 298 (369)
.+..++|+|++|+||||+|+.+++.+++
T Consensus 37 l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 37 LHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3568899999999999999999887754
No 482
>PF13245 AAA_19: Part of AAA domain
Probab=96.20 E-value=0.0035 Score=47.61 Aligned_cols=22 Identities=18% Similarity=0.569 Sum_probs=16.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHh
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYL 293 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~ 293 (369)
..++++.|+||||||+.+..+.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i 31 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARI 31 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3567889999999996555543
No 483
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.20 E-value=0.079 Score=46.58 Aligned_cols=76 Identities=16% Similarity=0.254 Sum_probs=50.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCcch----------------------------------hHHHHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDTLG----------------------------------SWQKCVS 314 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~~~----------------------------------~~~~~~~ 314 (369)
.++.+.|++|||||||.+.++-.. |...++...+. ..++...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~ 108 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLA 108 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHH
Confidence 578999999999999999998653 33333321110 0122344
Q ss_pred HHHHHHhCCCcEEEeCC--CCCHHHHHHHHHHHHhc
Q psy4598 315 VMKAALDSGLSVVVDNT--NPDKESRHRYIEAAKQH 348 (369)
Q Consensus 315 ~~~~~l~~g~~vIiD~t--n~~~~~r~~~~~la~~~ 348 (369)
.++..+.....+|+|-+ .++...++.+.++.++.
T Consensus 109 laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~ 144 (178)
T cd03247 109 LARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV 144 (178)
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 55666677778889964 45777887777766543
No 484
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.18 E-value=0.0046 Score=61.85 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=27.2
Q ss_pred cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598 270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN 302 (369)
Q Consensus 270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~ 302 (369)
..|+-|+|.||||||||+++++++...+..++.
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~ 209 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIR 209 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 346778999999999999999999987655443
No 485
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.18 E-value=0.012 Score=50.18 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKP 295 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~ 295 (369)
-|+|+|+.|||||||+++|...
T Consensus 3 rimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 4799999999999999999875
No 486
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=96.18 E-value=0.059 Score=50.12 Aligned_cols=88 Identities=13% Similarity=0.170 Sum_probs=58.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----HH------------------HHHHHHHHHHhCCCc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----WQ------------------KCVSVMKAALDSGLS 325 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----~~------------------~~~~~~~~~l~~g~~ 325 (369)
..+++.|--|+||||++..|+..+ .+..++.|.... |. .+...+......+..
T Consensus 4 i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~~~l~~~~~~i~~~~~i~~r~fD~Lve~i~~~~~d 83 (241)
T PRK13886 4 IHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGYKALNVRRLNIMDGDEINTRNFDALVEMIASTEGD 83 (241)
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhHHhcCCcceecccCCccchhhHHHHHHHHhccCCC
Confidence 345556899999999999887753 577888885421 11 233444444446678
Q ss_pred EEEeCCCCCHHHHHH------HHHHHHhcCCeEEEEEEeCC
Q psy4598 326 VVVDNTNPDKESRHR------YIEAAKQHGVRCIAVHMNIS 360 (369)
Q Consensus 326 vIiD~tn~~~~~r~~------~~~la~~~~~~v~~v~l~~~ 360 (369)
+|||++..+...-.. +.+++.+.|..+++.++-+.
T Consensus 84 vIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi~g 124 (241)
T PRK13886 84 VIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVTG 124 (241)
T ss_pred EEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEECC
Confidence 999988655444433 35678899999887776544
No 487
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.17 E-value=0.047 Score=48.52 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=45.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC----CcEEEe-CCcch-------------------hHHHHHHHHHHHHhCCCcEE
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL----NYTTVN-RDTLG-------------------SWQKCVSVMKAALDSGLSVV 327 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~----~~~~i~-~D~~~-------------------~~~~~~~~~~~~l~~g~~vI 327 (369)
...++++|++||||||+.+.|.... +...+. ...+. ......+.++.+++..-.+|
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 3579999999999999999998653 222221 11110 00123445556666666676
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCe
Q psy4598 328 VDNTNPDKESRHRYIEAAKQHGVR 351 (369)
Q Consensus 328 iD~tn~~~~~r~~~~~la~~~~~~ 351 (369)
+-+.-.+.+... +++.+ ..|..
T Consensus 105 ~igEir~~ea~~-~~~a~-~tGh~ 126 (186)
T cd01130 105 IVGEVRGGEALD-LLQAM-NTGHP 126 (186)
T ss_pred EEEccCcHHHHH-HHHHH-hcCCC
Confidence 666555666543 44443 45544
No 488
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.17 E-value=0.058 Score=52.64 Aligned_cols=26 Identities=27% Similarity=0.601 Sum_probs=22.7
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPL 296 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~ 296 (369)
.+..+++.|+||+||||+|+.+++.+
T Consensus 35 ~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 35 IAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998765
No 489
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.17 E-value=0.032 Score=52.46 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=25.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc------CCcEEEeCCc
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKP------LNYTTVNRDT 305 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~------~~~~~i~~D~ 305 (369)
.++++.|+||+||||++.+++.. .++.+++.+.
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 57899999999999999987654 2466777654
No 490
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.17 E-value=0.055 Score=50.81 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=28.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCcc
Q psy4598 272 DSVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDTL 306 (369)
Q Consensus 272 ~~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~~ 306 (369)
-.++.+.||+||||||+.+.++..+ |-++++...+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i 66 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI 66 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence 3688999999999999999999854 4566666543
No 491
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.16 E-value=0.052 Score=53.30 Aligned_cols=141 Identities=16% Similarity=0.223 Sum_probs=76.8
Q ss_pred CCceEEEEEcCCCCCcchhhhhccCCCccccc-ccccccchhhhh-hhcc--ccccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598 221 DKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTV-NRDTLGSWQKCV-SVMK--AALDSVLIMIGSQGSGKSSFVSTYLKPL 296 (369)
Q Consensus 221 ~~~~i~v~~g~~~~gks~~~~~~~~~~~~~~i-~r~~~~~~~~~~-~~~~--~~~~~lIll~G~pGSGKSTla~~L~~~~ 296 (369)
+.+.|+|.++-.| ..|..+.+.+...||... =..-+..|.... ...+ +....++++.|+.|||||++..+|.+.
T Consensus 87 ~~~~ivvyC~rgG-~RS~~aa~~L~~~G~~v~~L~GG~~awr~~~~~~~~~~~~~~~~ivl~G~TGsGKT~iL~~L~~~- 164 (345)
T PRK11784 87 ANPRGLLYCWRGG-LRSGSVQQWLKEAGIDVPRLEGGYKAYRRFVIDTLEEAPAQFPLVVLGGNTGSGKTELLQALANA- 164 (345)
T ss_pred CCCeEEEEECCCC-hHHHHHHHHHHHcCCCcEEEcCCHHHHHHhhHHHHhhhcccCceEecCCCCcccHHHHHHHHHhc-
Confidence 5667777764322 345555566666676211 112234444322 1122 123467889999999999999999865
Q ss_pred CcEEEeCCcch------------------hHHHHHHHHHHHHhCCCcEEEeCCCCCHHHH---HHHHHHHHhcCCeEEEE
Q psy4598 297 NYTTVNRDTLG------------------SWQKCVSVMKAALDSGLSVVVDNTNPDKESR---HRYIEAAKQHGVRCIAV 355 (369)
Q Consensus 297 ~~~~i~~D~~~------------------~~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r---~~~~~la~~~~~~v~~v 355 (369)
+..+|+..... .|+.....+...+.....|+|++-...--.. ..+.+.-++. .+|
T Consensus 165 ~~~vlDlE~~aehrGS~fG~~~~~qpsQ~~Fe~~l~~~l~~~~~~~~i~vE~Es~~IG~~~lP~~l~~~m~~~----~~v 240 (345)
T PRK11784 165 GAQVLDLEGLANHRGSSFGRLGGPQPSQKDFENLLAEALLKLDPARPIVVEDESRRIGRVHLPEALYEAMQQA----PIV 240 (345)
T ss_pred CCeEEECCchhhhccccccCCCCCCcchHHHHHHHHHHHHcCCCCCeEEEEeccccccCccCCHHHHHHHhhC----CEE
Confidence 45567665542 2343344444344445678887654211000 2222222222 367
Q ss_pred EEeCCHHHHHHH
Q psy4598 356 HMNISKEHAKHN 367 (369)
Q Consensus 356 ~l~~~~e~~~~R 367 (369)
++++|.|.-.+|
T Consensus 241 ~i~~~~e~Rv~~ 252 (345)
T PRK11784 241 VVEAPLEERVER 252 (345)
T ss_pred EEECCHHHHHHH
Confidence 889998876655
No 492
>PRK08181 transposase; Validated
Probab=96.16 E-value=0.011 Score=55.99 Aligned_cols=72 Identities=19% Similarity=0.191 Sum_probs=41.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCcchh-HHHH-----HHHHHHHHhCCCcEEEeCCCC---CHHHHH
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDTLGS-WQKC-----VSVMKAALDSGLSVVVDNTNP---DKESRH 339 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~~-~~~~-----~~~~~~~l~~g~~vIiD~tn~---~~~~r~ 339 (369)
-++|+|+||+|||+++.+++.. ..+.+++...+-. .... .......+..-..+|||.... +.+...
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~~ 187 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETS 187 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHHH
Confidence 4799999999999999999754 2355666544321 1100 111222334445677886542 444444
Q ss_pred HHHHHH
Q psy4598 340 RYIEAA 345 (369)
Q Consensus 340 ~~~~la 345 (369)
.+.++.
T Consensus 188 ~Lf~li 193 (269)
T PRK08181 188 VLFELI 193 (269)
T ss_pred HHHHHH
Confidence 444443
No 493
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.064 Score=46.98 Aligned_cols=75 Identities=20% Similarity=0.359 Sum_probs=47.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeC-------------------Cc--ch--h-H---------HHHHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNR-------------------DT--LG--S-W---------QKCVSV 315 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~-------------------D~--~~--~-~---------~~~~~~ 315 (369)
.++.++|++|||||||.+.++-.. |-+.++. +. +. + . ++....
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~l 106 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLAL 106 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHH
Confidence 578999999999999999998743 2222221 10 00 0 1 122345
Q ss_pred HHHHHhCCCcEEEeCC--CCCHHHHHHHHHHHHh
Q psy4598 316 MKAALDSGLSVVVDNT--NPDKESRHRYIEAAKQ 347 (369)
Q Consensus 316 ~~~~l~~g~~vIiD~t--n~~~~~r~~~~~la~~ 347 (369)
++..+..-..+++|-+ +++...+..+.++.++
T Consensus 107 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 140 (173)
T cd03230 107 AQALLHDPELLILDEPTSGLDPESRREFWELLRE 140 (173)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 5556666778889964 4577778777666554
No 494
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.16 E-value=0.0036 Score=62.83 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=26.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCC
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRD 304 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D 304 (369)
.-|+|.||||||||++|+.+++.++..++..|
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence 45899999999999999999998765554433
No 495
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.16 E-value=0.0033 Score=61.17 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=28.5
Q ss_pred hhccccccEEEEEEcCCCCcHHHHHHHHhccCCcEEE
Q psy4598 265 SVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTV 301 (369)
Q Consensus 265 ~~~~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i 301 (369)
....+...+.|+++|+|||||||+++.|+..++..++
T Consensus 155 ~~~~~~~~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 155 REVRPFFVKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred HHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 3334444568999999999999999999998765443
No 496
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.15 E-value=0.07 Score=50.59 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG 307 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~ 307 (369)
..|+++|++|+||||+++.++..+ ...+++.|..+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 578999999999999999887653 46678888764
No 497
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.14 E-value=0.045 Score=47.61 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q psy4598 275 LIMIGSQGSGKSSFVSTYLKP 295 (369)
Q Consensus 275 Ill~G~pGSGKSTla~~L~~~ 295 (369)
|+++|.+||||||+...|...
T Consensus 2 v~v~G~~~~GKStlln~l~~~ 22 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYV 22 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHh
Confidence 688999999999999999765
No 498
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.14 E-value=0.011 Score=59.84 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=25.9
Q ss_pred ccEEEEEEcCCCCcHHHHHHHHhccCCcEEE
Q psy4598 271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTV 301 (369)
Q Consensus 271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i 301 (369)
.|.-++|.|+||+|||++|++++..++..++
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi 246 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFL 246 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 4567899999999999999999998764444
No 499
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.13 E-value=0.04 Score=51.59 Aligned_cols=85 Identities=12% Similarity=0.147 Sum_probs=52.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhcc------CCcEEEeCCcch---------------------------hHHHHHHHHHHH
Q psy4598 273 SVLIMIGSQGSGKSSFVSTYLKP------LNYTTVNRDTLG---------------------------SWQKCVSVMKAA 319 (369)
Q Consensus 273 ~lIll~G~pGSGKSTla~~L~~~------~~~~~i~~D~~~---------------------------~~~~~~~~~~~~ 319 (369)
.++++.|.||+|||+++..++.. .++.+++.+.=. .|+++. .+...
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~-~~~~~ 98 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQ-AAAEK 98 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHH-HHHHH
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHH-HHHHH
Confidence 69999999999999999998763 356777775420 122222 23344
Q ss_pred HhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEe
Q psy4598 320 LDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMN 358 (369)
Q Consensus 320 l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~ 358 (369)
+.....+|.|....+.......+...+..+..+.+|++|
T Consensus 99 l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~ID 137 (259)
T PF03796_consen 99 LSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFID 137 (259)
T ss_dssp HHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred HhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEec
Confidence 555556667777777777666665554443445555554
No 500
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.13 E-value=0.0038 Score=60.48 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCcEEE
Q psy4598 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTV 301 (369)
Q Consensus 274 lIll~G~pGSGKSTla~~L~~~~~~~~i 301 (369)
-|+|.|+||+||||+++.+++.+++.++
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 3799999999999999999998765443
Done!