Your job contains 1 sequence.
>psy4598
MKGSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIE
SVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRK
PVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF
FTPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFV
STYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTT
VNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNIS
KEHAKHNIK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4598
(369 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q96T60 - symbol:PNKP "Bifunctional polynucleoti... 543 2.1e-52 1
UNIPROTKB|F1N3Q9 - symbol:PNKP "Uncharacterized protein" ... 542 2.7e-52 1
UNIPROTKB|E2R0U3 - symbol:PNKP "Uncharacterized protein" ... 538 7.2e-52 1
UNIPROTKB|F1RHU1 - symbol:PNKP "Uncharacterized protein" ... 537 9.2e-52 1
MGI|MGI:1891698 - symbol:Pnkp "polynucleotide kinase 3'- ... 536 1.2e-51 1
RGD|1303331 - symbol:Pnkp "polynucleotide kinase 3'-phosp... 526 1.3e-50 1
WB|WBGene00009010 - symbol:F21D5.5 species:6239 "Caenorha... 495 2.6e-47 1
POMBASE|SPAC23C11.04c - symbol:pnk1 "DNA kinase/phosphata... 334 3.0e-30 1
DICTYBASE|DDB_G0281229 - symbol:pnkp "putative bifunction... 321 2.3e-28 1
GENEDB_PFALCIPARUM|PF13_0334 - symbol:PF13_0334 "polynucl... 260 6.8e-22 1
TAIR|locus:2086355 - symbol:AT3G14890 species:3702 "Arabi... 213 1.4e-14 1
CGD|CAL0005510 - symbol:orf19.1547 species:5476 "Candida ... 161 5.9e-12 2
UNIPROTKB|Q5ALN0 - symbol:PNK1 "Putative uncharacterized ... 161 5.9e-12 2
>UNIPROTKB|Q96T60 [details] [associations]
symbol:PNKP "Bifunctional polynucleotide
phosphatase/kinase" species:9606 "Homo sapiens" [GO:0005524 "ATP
binding" evidence=NAS] [GO:0019201 "nucleotide kinase activity"
evidence=IDA] [GO:0046403 "polynucleotide 3'-phosphatase activity"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IGI] [GO:0006261
"DNA-dependent DNA replication" evidence=NAS] [GO:0042769 "DNA
damage response, detection of DNA damage" evidence=NAS;IDA]
[GO:0006979 "response to oxidative stress" evidence=IDA]
[GO:0009314 "response to radiation" evidence=NAS;TAS] [GO:0004519
"endonuclease activity" evidence=NAS] [GO:0046404 "ATP-dependent
polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=NAS] [GO:0046939
"nucleotide phosphorylation" evidence=IDA] [GO:0016311
"dephosphorylation" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000718 "nucleotide-excision repair, DNA damage
removal" evidence=NAS] [GO:0003690 "double-stranded DNA binding"
evidence=TAS] [GO:0017076 "purine nucleotide binding" evidence=NAS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000253
InterPro:IPR008984 PROSITE:PS50006 GO:GO:0005524 GO:GO:0006979
GO:GO:0005730 GO:GO:0003684 Gene3D:3.40.50.1000 InterPro:IPR023214
SUPFAM:SSF56784 GO:GO:0006261 Gene3D:2.60.200.20 SUPFAM:SSF49879
GO:GO:0003690 GO:GO:0004519 GO:GO:0009314 GO:GO:0046403
GO:GO:0000718 GO:GO:0046404 GO:GO:0042769 InterPro:IPR006549
TIGRFAMs:TIGR01662 eggNOG:COG0241 InterPro:IPR013954 Pfam:PF08645
GO:GO:0019201 InterPro:IPR015636 InterPro:IPR006551
PANTHER:PTHR12083 TIGRFAMs:TIGR01664 EMBL:AF126486 EMBL:AF125807
EMBL:AF120499 EMBL:AF354258 EMBL:AY133033 EMBL:AC018766
EMBL:BC033822 IPI:IPI00290684 RefSeq:NP_009185.2 UniGene:Hs.732075
PDB:2BRF PDB:2W3O PDBsum:2BRF PDBsum:2W3O ProteinModelPortal:Q96T60
SMR:Q96T60 IntAct:Q96T60 MINT:MINT-1199136 STRING:Q96T60
PhosphoSite:Q96T60 DMDM:50401132 PaxDb:Q96T60 PRIDE:Q96T60
DNASU:11284 Ensembl:ENST00000322344 GeneID:11284 KEGG:hsa:11284
UCSC:uc002pqg.3 CTD:11284 GeneCards:GC19M050364 HGNC:HGNC:9154
HPA:HPA006782 MIM:605610 MIM:613402 neXtProt:NX_Q96T60
Orphanet:228418 PharmGKB:PA33477 HOGENOM:HOG000031466
HOVERGEN:HBG053624 InParanoid:Q96T60 KO:K08073 OMA:SWQRCVT
OrthoDB:EOG4TF0K0 PhylomeDB:Q96T60 EvolutionaryTrace:Q96T60
GenomeRNAi:11284 NextBio:42959 Bgee:Q96T60 CleanEx:HS_PNKP
Genevestigator:Q96T60 GermOnline:ENSG00000039650 InterPro:IPR006550
TIGRFAMs:TIGR01663 Uniprot:Q96T60
Length = 521
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 114/271 (42%), Positives = 157/271 (57%)
Query: 5 WDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLK 64
W+ ++ KLLVFT+ V K+A FDLDGTLITT+SGKVFP DW++L+ I L+
Sbjct: 147 WENLE--KLLVFTAAGVKPQGKVAGFDLDGTLITTRSGKVFPTGPSDWRILYPEIPRKLR 204
Query: 65 QYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPG 124
+ +GYKLVIFTNQ +IGR K+ +F+AK E +++ L VP Q+ VAT YRKPV G
Sbjct: 205 ELEAEGYKLVIFTNQMSIGRGKLPAEEFKAKVEAVVEKLGVPFQVLVATHAGLYRKPVTG 264
Query: 125 MWEYLSQEKNGDLAIDISQSFYXXXXXXXXXXXXP-KKKKDFACTDHXXXXXXXXXXXTP 183
MW++L ++ N I I S + P +KKKDF+C D TP
Sbjct: 265 MWDHLQEQANDGTPISIGDSIFVGDAAGRPANWAPGRKKKDFSCADRLFALNLGLPFATP 324
Query: 184 EQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPN---IPHDKKQVLIMIGSQGSGKSSFV 240
E+ FL A F LP F PR V ++ +P + +V++ +G G+GKS+F+
Sbjct: 325 EEFFLKWPAAGF-ELPAFDPRTV-SRSGPLCLPESRALLSASPEVVVAVGFPGAGKSTFL 382
Query: 241 STYLKPLNYTTVNRDTLGSWQKCVSVMKAAL 271
+L Y VNRDTLGSWQ+CV+ + AL
Sbjct: 383 KKHLVSAGYVHVNRDTLGSWQRCVTTCETAL 413
Score = 235 (87.8 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 46/108 (42%), Positives = 65/108 (60%)
Query: 263 CVSVMKAALDS---VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAA 319
C+ +A L + V++ +G G+GKS+F+ +L Y VNRDTLGSWQ+CV+ + A
Sbjct: 353 CLPESRALLSASPEVVVAVGFPGAGKSTFLKKHLVSAGYVHVNRDTLGSWQRCVTTCETA 412
Query: 320 LDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367
L G V +DNTNPD SR RY++ A+ GV C + E A+HN
Sbjct: 413 LKQGKRVAIDNTNPDAASRARYVQCARAAGVPCRCFLFTATLEQARHN 460
>UNIPROTKB|F1N3Q9 [details] [associations]
symbol:PNKP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046404 "ATP-dependent polydeoxyribonucleotide
5'-hydroxyl-kinase activity" evidence=IEA] [GO:0046403
"polynucleotide 3'-phosphatase activity" evidence=IEA] [GO:0042769
"DNA damage response, detection of DNA damage" evidence=IEA]
[GO:0019201 "nucleotide kinase activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000253 InterPro:IPR008984 GO:GO:0006979 GO:GO:0005730
Gene3D:3.40.50.1000 InterPro:IPR023214 SUPFAM:SSF56784
GO:GO:0006281 Gene3D:2.60.200.20 SUPFAM:SSF49879
GeneTree:ENSGT00570000079163 GO:GO:0046403 GO:GO:0046404
GO:GO:0042769 InterPro:IPR006549 TIGRFAMs:TIGR01662
InterPro:IPR013954 Pfam:PF08645 GO:GO:0019201 InterPro:IPR015636
InterPro:IPR006551 PANTHER:PTHR12083 TIGRFAMs:TIGR01664 OMA:SWQRCVT
InterPro:IPR006550 TIGRFAMs:TIGR01663 EMBL:DAAA02047486
IPI:IPI00704618 ProteinModelPortal:F1N3Q9
Ensembl:ENSBTAT00000002397 ArrayExpress:F1N3Q9 Uniprot:F1N3Q9
Length = 522
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 115/271 (42%), Positives = 156/271 (57%)
Query: 5 WDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLK 64
W+ + KLLVFT+ V K+A FDLDGTLITT+SGKVFP DW++L+ I L+
Sbjct: 148 WETFE--KLLVFTAPGVKARGKVAGFDLDGTLITTRSGKVFPTGPSDWRILYLEIPRKLR 205
Query: 65 QYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPG 124
+ GYKLVIFTNQ IGR K+ +F+AK E +++ L VP Q+ VAT YRKPV G
Sbjct: 206 ELAAKGYKLVIFTNQMGIGRGKLRAEEFKAKVEAVVEKLGVPFQVLVATHAGLYRKPVSG 265
Query: 125 MWEYLSQEKNGDLAIDISQSFYXXXXXXXXXXXXP-KKKKDFACTDHXXXXXXXXXXXTP 183
MW++L ++ N + I I S + P +KKKDF+C D TP
Sbjct: 266 MWDHLQEQANEGVPISIGDSVFVGDAAGRPANWAPGRKKKDFSCADRLFALNVGLPFTTP 325
Query: 184 EQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIP---NIPHDKKQVLIMIGSQGSGKSSFV 240
E+ FL A F LP F PR V + +P ++ +V++ +G G+GKS+F+
Sbjct: 326 EEFFLKWPATRF-ELPAFDPRSV-ARCGPLCLPESSSLLSSDPEVVVAVGFPGAGKSTFL 383
Query: 241 STYLKPLNYTTVNRDTLGSWQKCVSVMKAAL 271
+L Y VNRDTLGSWQ+CV+ +AAL
Sbjct: 384 REHLVSAGYVHVNRDTLGSWQRCVTACEAAL 414
Score = 236 (88.1 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 48/108 (44%), Positives = 67/108 (62%)
Query: 263 CVSVMKAALDS---VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAA 319
C+ + L S V++ +G G+GKS+F+ +L Y VNRDTLGSWQ+CV+ +AA
Sbjct: 354 CLPESSSLLSSDPEVVVAVGFPGAGKSTFLREHLVSAGYVHVNRDTLGSWQRCVTACEAA 413
Query: 320 LDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367
L VV+DNTNPD +SR RYI+ A+ GV C + + E A+HN
Sbjct: 414 LKQRKPVVIDNTNPDVQSRARYIKCARDAGVPCRCFLFSATVEQARHN 461
>UNIPROTKB|E2R0U3 [details] [associations]
symbol:PNKP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0019201 "nucleotide kinase activity"
evidence=IEA] [GO:0006979 "response to oxidative stress"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0046404 "ATP-dependent
polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=IEA]
[GO:0046403 "polynucleotide 3'-phosphatase activity" evidence=IEA]
[GO:0042769 "DNA damage response, detection of DNA damage"
evidence=IEA] InterPro:IPR000253 InterPro:IPR008984 GO:GO:0006979
GO:GO:0005730 Gene3D:3.40.50.1000 InterPro:IPR023214
SUPFAM:SSF56784 GO:GO:0006281 Gene3D:2.60.200.20 SUPFAM:SSF49879
GeneTree:ENSGT00570000079163 GO:GO:0046403 GO:GO:0046404
GO:GO:0042769 InterPro:IPR006549 TIGRFAMs:TIGR01662
InterPro:IPR013954 Pfam:PF08645 GO:GO:0019201 InterPro:IPR015636
InterPro:IPR006551 PANTHER:PTHR12083 TIGRFAMs:TIGR01664 CTD:11284
KO:K08073 OMA:SWQRCVT InterPro:IPR006550 TIGRFAMs:TIGR01663
EMBL:AAEX03000795 EMBL:AAEX03000794 RefSeq:XP_541488.2
Ensembl:ENSCAFT00000005610 GeneID:484373 KEGG:cfa:484373
Uniprot:E2R0U3
Length = 521
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 113/264 (42%), Positives = 156/264 (59%)
Query: 12 KLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY 71
KLLVFT+ V +K+A FDLDGTLITT+SGKVFP DW++L+ I L++ +GY
Sbjct: 152 KLLVFTAPGVKPRSKVAGFDLDGTLITTRSGKVFPTGPTDWRILYLEIPRKLRELDAEGY 211
Query: 72 KLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQ 131
KLVIFTNQ AIGR K+ +F+AK E +++ L +P Q+ VAT YRKPV GMW++L +
Sbjct: 212 KLVIFTNQMAIGRGKLPAEEFKAKVEAVVEKLGLPFQVLVATHAGLYRKPVIGMWDHLRE 271
Query: 132 EKNGDLAIDISQSFYXXXXXXXXXXXXP-KKKKDFACTDHXXXXXXXXXXXTPEQIFLNE 190
+ N + + I S + P +KKKDF+C D TPE+ FL
Sbjct: 272 QGNEGVPVSIGDSMFVGDAAGRPANWAPGRKKKDFSCADRLFALNLGLPFATPEEFFLKW 331
Query: 191 KAPDFPNLPTFKPREVYQKAQ---SQTIPNIPHDKKQVLIMIGSQGSGKSSFVSTYLKPL 247
+F LPTF PR V ++ + HD +V++ +G G+GKS+F+ +L
Sbjct: 332 PVANFV-LPTFDPRTVSPSGPLCLPESSSLLSHDP-EVVVAVGFPGAGKSTFLQEHLVSA 389
Query: 248 NYTTVNRDTLGSWQKCVSVMKAAL 271
Y VNRDTLGSWQ+CV+ + AL
Sbjct: 390 GYVHVNRDTLGSWQRCVTTCENAL 413
Score = 233 (87.1 bits), Expect = 2.8e-17, P = 2.8e-17
Identities = 44/94 (46%), Positives = 61/94 (64%)
Query: 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNP 333
V++ +G G+GKS+F+ +L Y VNRDTLGSWQ+CV+ + AL VV+DNTNP
Sbjct: 367 VVVAVGFPGAGKSTFLQEHLVSAGYVHVNRDTLGSWQRCVTTCENALKQRKRVVIDNTNP 426
Query: 334 DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367
D +R RYI+ A+ GV C + + EHA+HN
Sbjct: 427 DPPTRARYIKCARDAGVPCRCFLFSTTLEHARHN 460
>UNIPROTKB|F1RHU1 [details] [associations]
symbol:PNKP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046404 "ATP-dependent polydeoxyribonucleotide
5'-hydroxyl-kinase activity" evidence=IEA] [GO:0046403
"polynucleotide 3'-phosphatase activity" evidence=IEA] [GO:0042769
"DNA damage response, detection of DNA damage" evidence=IEA]
[GO:0019201 "nucleotide kinase activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000253 InterPro:IPR008984 GO:GO:0006979 GO:GO:0005730
Gene3D:3.40.50.1000 InterPro:IPR023214 SUPFAM:SSF56784
GO:GO:0006281 Gene3D:2.60.200.20 SUPFAM:SSF49879
GeneTree:ENSGT00570000079163 GO:GO:0046403 GO:GO:0046404
GO:GO:0042769 InterPro:IPR006549 TIGRFAMs:TIGR01662
InterPro:IPR013954 Pfam:PF08645 GO:GO:0019201 InterPro:IPR015636
InterPro:IPR006551 PANTHER:PTHR12083 TIGRFAMs:TIGR01664 OMA:SWQRCVT
InterPro:IPR006550 TIGRFAMs:TIGR01663 EMBL:CU694867
Ensembl:ENSSSCT00000003550 Uniprot:F1RHU1
Length = 522
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 115/271 (42%), Positives = 158/271 (58%)
Query: 5 WDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLK 64
W+ + KLLVFT+ V K+ASFDLDGTLITT+SGKVFP DW++L+ I L+
Sbjct: 148 WESFE--KLLVFTAPGVKPRGKVASFDLDGTLITTRSGKVFPTGPSDWRILYLEIPRKLR 205
Query: 65 QYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPG 124
+ +GYKLVIFTNQ IGR K+ +F+AK E +++ L VP Q+ VAT YRKPV G
Sbjct: 206 ELDAEGYKLVIFTNQMGIGRGKLPAEEFKAKVEAVVEKLGVPFQVLVATHAGLYRKPVIG 265
Query: 125 MWEYLSQEKNGDLAIDISQSFYXXXXXXXXXXXXP-KKKKDFACTDHXXXXXXXXXXXTP 183
MW++L ++ N + I I S + P +KKKDF+C D TP
Sbjct: 266 MWDHLREQGNEGVPISIGDSVFVGDAAGRPANWAPGRKKKDFSCADRLFALNLGLPFATP 325
Query: 184 EQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIP---NIPHDKKQVLIMIGSQGSGKSSFV 240
E+ FL F LP F PR V ++ +P ++ +V++ +G G+GKS+F+
Sbjct: 326 EEFFLKWPVARF-ELPAFDPRTV-SRSGPLCLPESSSLLSPDPEVVVAVGFPGAGKSTFL 383
Query: 241 STYLKPLNYTTVNRDTLGSWQKCVSVMKAAL 271
+L Y VNRDTLGSWQ+CV+ +AAL
Sbjct: 384 REHLVSAGYVHVNRDTLGSWQRCVTTCEAAL 414
Score = 238 (88.8 bits), Expect = 6.1e-18, P = 6.1e-18
Identities = 46/94 (48%), Positives = 62/94 (65%)
Query: 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNP 333
V++ +G G+GKS+F+ +L Y VNRDTLGSWQ+CV+ +AAL VV+DNTNP
Sbjct: 368 VVVAVGFPGAGKSTFLREHLVSAGYVHVNRDTLGSWQRCVTTCEAALKQRKRVVIDNTNP 427
Query: 334 DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367
D +SR RYI+ A+ GV C + S E A+HN
Sbjct: 428 DLQSRARYIKCARDAGVPCRCFLFSASLEQARHN 461
>MGI|MGI:1891698 [details] [associations]
symbol:Pnkp "polynucleotide kinase 3'- phosphatase"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=ISO] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0016301 "kinase activity" evidence=IEA]
[GO:0016310 "phosphorylation" evidence=IEA] [GO:0016311
"dephosphorylation" evidence=ISO] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0019201 "nucleotide kinase activity"
evidence=ISO] [GO:0042769 "DNA damage response, detection of DNA
damage" evidence=ISO] [GO:0046403 "polynucleotide 3'-phosphatase
activity" evidence=ISO] [GO:0046404 "ATP-dependent
polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=ISO]
[GO:0046939 "nucleotide phosphorylation" evidence=ISO]
InterPro:IPR000253 InterPro:IPR008984 PROSITE:PS50006
MGI:MGI:1891698 GO:GO:0005524 GO:GO:0005634 Gene3D:3.40.50.1000
InterPro:IPR023214 SUPFAM:SSF56784 GO:GO:0006281 Gene3D:2.60.200.20
SUPFAM:SSF49879 GO:GO:0046403 GO:GO:0046404 InterPro:IPR006549
TIGRFAMs:TIGR01662 eggNOG:COG0241 InterPro:IPR013954 Pfam:PF08645
InterPro:IPR015636 InterPro:IPR006551 PANTHER:PTHR12083
TIGRFAMs:TIGR01664 HOGENOM:HOG000031466 HOVERGEN:HBG053624
OrthoDB:EOG4TF0K0 InterPro:IPR006550 TIGRFAMs:TIGR01663
EMBL:AF129451 EMBL:BC057659 IPI:IPI00124762 IPI:IPI00454118
UniGene:Mm.238254 PDB:1UJX PDB:1YJ5 PDB:1YJM PDB:3U7E PDB:3U7F
PDB:3U7G PDB:3U7H PDB:3ZVL PDB:3ZVM PDB:3ZVN PDBsum:1UJX
PDBsum:1YJ5 PDBsum:1YJM PDBsum:3U7E PDBsum:3U7F PDBsum:3U7G
PDBsum:3U7H PDBsum:3ZVL PDBsum:3ZVM PDBsum:3ZVN
ProteinModelPortal:Q9JLV6 SMR:Q9JLV6 IntAct:Q9JLV6 STRING:Q9JLV6
PhosphoSite:Q9JLV6 PaxDb:Q9JLV6 PRIDE:Q9JLV6 UCSC:uc009grf.1
UCSC:uc012fjx.1 InParanoid:Q9JLV6 EvolutionaryTrace:Q9JLV6
CleanEx:MM_PNKP Genevestigator:Q9JLV6 GermOnline:ENSMUSG00000002963
Uniprot:Q9JLV6
Length = 522
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 112/264 (42%), Positives = 153/264 (57%)
Query: 12 KLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY 71
KLLVFT++ V K+A+FDLDGTLITT+SGKVFP DW++L+ I L++ +GY
Sbjct: 151 KLLVFTASGVKPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGY 210
Query: 72 KLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQ 131
KLVIFTNQ IGR K+ F+ K E +++ L VP Q+ VAT RKPV GMW++L +
Sbjct: 211 KLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSGMWDHLQE 270
Query: 132 EKNGDLAIDISQSFYXXXXXXXXXXXXP-KKKKDFACTDHXXXXXXXXXXXTPEQIFLNE 190
+ N + I + S + P +KKKDF+C D TPE+ FL
Sbjct: 271 QANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFATPEEFFLKW 330
Query: 191 KAPDFPNLPTFKPREVYQKAQSQTIP---NIPHDKKQVLIMIGSQGSGKSSFVSTYLKPL 247
A F LP F PR + A +P ++ +V++ +G G+GKS+F+ +L
Sbjct: 331 PAARF-ELPAFDPRTI-SSAGPLYLPESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 388
Query: 248 NYTTVNRDTLGSWQKCVSVMKAAL 271
Y VNRDTLGSWQ+CVS +AAL
Sbjct: 389 GYVHVNRDTLGSWQRCVSSCQAAL 412
Score = 246 (91.7 bits), Expect = 4.3e-19, P = 4.3e-19
Identities = 48/94 (51%), Positives = 62/94 (65%)
Query: 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNP 333
V++ +G G+GKS+F+ +L Y VNRDTLGSWQ+CVS +AAL G VV+DNTNP
Sbjct: 366 VVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNP 425
Query: 334 DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367
D SR RYI+ AK GV C + + E A+HN
Sbjct: 426 DVPSRARYIQCAKDAGVPCRCFNFCATIEQARHN 459
>RGD|1303331 [details] [associations]
symbol:Pnkp "polynucleotide kinase 3'-phosphatase" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0006281 "DNA repair"
evidence=IEA;ISO] [GO:0006979 "response to oxidative stress"
evidence=IEA;ISO] [GO:0016311 "dephosphorylation" evidence=ISO]
[GO:0019201 "nucleotide kinase activity" evidence=IEA;ISO]
[GO:0042769 "DNA damage response, detection of DNA damage"
evidence=IEA;ISO] [GO:0046403 "polynucleotide 3'-phosphatase
activity" evidence=IEA;ISO] [GO:0046404 "ATP-dependent
polydeoxyribonucleotide 5'-hydroxyl-kinase activity"
evidence=IEA;ISO] [GO:0046939 "nucleotide phosphorylation"
evidence=ISO] InterPro:IPR000253 InterPro:IPR008984 RGD:1303331
GO:GO:0006979 GO:GO:0005730 Gene3D:3.40.50.1000 InterPro:IPR023214
SUPFAM:SSF56784 GO:GO:0006281 Gene3D:2.60.200.20 SUPFAM:SSF49879
GeneTree:ENSGT00570000079163 GO:GO:0046403 EMBL:CH473979
GO:GO:0046404 GO:GO:0042769 InterPro:IPR006549 TIGRFAMs:TIGR01662
eggNOG:COG0241 InterPro:IPR013954 Pfam:PF08645 GO:GO:0019201
InterPro:IPR015636 InterPro:IPR006551 PANTHER:PTHR12083
TIGRFAMs:TIGR01664 CTD:11284 HOGENOM:HOG000031466
HOVERGEN:HBG053624 KO:K08073 OrthoDB:EOG4TF0K0 InterPro:IPR006550
TIGRFAMs:TIGR01663 EMBL:BC079307 IPI:IPI00566155
RefSeq:NP_001004259.1 UniGene:Rn.45061 SMR:Q6AXV0 STRING:Q6AXV0
Ensembl:ENSRNOT00000051640 GeneID:308576 KEGG:rno:308576
UCSC:RGD:1303331 InParanoid:Q6AXV0 NextBio:659158
Genevestigator:Q6AXV0 Uniprot:Q6AXV0
Length = 522
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 112/264 (42%), Positives = 152/264 (57%)
Query: 12 KLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY 71
+LLVFT++ V K+A+FDLDGTLITT+SGKVFP DW++L+ I L++ +GY
Sbjct: 151 QLLVFTASGVKPRGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGY 210
Query: 72 KLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQ 131
KLVI TNQ IGR K+ F+AK E +++ L VP Q+ VAT RKPV GMW++L +
Sbjct: 211 KLVILTNQMGIGRGKLPAEVFKAKVEAVLEKLGVPFQVLVATHAGLNRKPVSGMWDHLQE 270
Query: 132 EKNGDLAIDISQSFYXXXXXXXXXXXXP-KKKKDFACTDHXXXXXXXXXXXTPEQIFLNE 190
+ N + I I S + P KKKKDF+C D TPE+ FL
Sbjct: 271 KGNEGIPISIGDSVFVGDAAGRPANWAPGKKKKDFSCADRLFALNVGLPFATPEEFFLKW 330
Query: 191 KAPDFPNLPTFKPREVYQKAQSQTIPN---IPHDKKQVLIMIGSQGSGKSSFVSTYLKPL 247
A F LP F PR + A +P + +V++ +G G+GKS+F+ +L
Sbjct: 331 PAARF-ELPAFDPRTI-SSAGPLYLPESSFLLSPNPEVVVAVGFPGAGKSTFIQKHLVSA 388
Query: 248 NYTTVNRDTLGSWQKCVSVMKAAL 271
Y VNRDTLGSWQ+CV+ +AAL
Sbjct: 389 GYVHVNRDTLGSWQRCVNSCQAAL 412
Score = 244 (91.0 bits), Expect = 8.8e-19, P = 8.8e-19
Identities = 47/94 (50%), Positives = 62/94 (65%)
Query: 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNP 333
V++ +G G+GKS+F+ +L Y VNRDTLGSWQ+CV+ +AAL G VV+DNTNP
Sbjct: 366 VVVAVGFPGAGKSTFIQKHLVSAGYVHVNRDTLGSWQRCVNSCQAALRQGKQVVIDNTNP 425
Query: 334 DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367
D +SR RYI+ AK GV C + E A+HN
Sbjct: 426 DIQSRARYIQCAKDAGVPCRCFSFCATIEQARHN 459
>WB|WBGene00009010 [details] [associations]
symbol:F21D5.5 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0019915 "lipid storage" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] GO:GO:0008340 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 Gene3D:3.40.50.1000 InterPro:IPR023214
SUPFAM:SSF56784 GO:GO:0019915 GO:GO:0003690
GeneTree:ENSGT00570000079163 InterPro:IPR006549 TIGRFAMs:TIGR01662
eggNOG:COG0241 InterPro:IPR013954 Pfam:PF08645 InterPro:IPR015636
InterPro:IPR006551 PANTHER:PTHR12083 TIGRFAMs:TIGR01664
HOGENOM:HOG000031466 KO:K08073 OMA:SWQRCVT EMBL:Z54271
EMBL:AF292046 PIR:T21197 RefSeq:NP_501503.1 UniGene:Cel.19445
ProteinModelPortal:Q19683 SMR:Q19683 PaxDb:Q19683 PRIDE:Q19683
EnsemblMetazoa:F21D5.5.1 EnsemblMetazoa:F21D5.5.2 GeneID:177681
KEGG:cel:CELE_F21D5.5 UCSC:F21D5.5 CTD:177681 WormBase:F21D5.5
InParanoid:Q19683 NextBio:897908 Uniprot:Q19683
Length = 407
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 103/280 (36%), Positives = 156/280 (55%)
Query: 3 GSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESV 62
GSW+ DNG L++FT ++ KIA+FD+DGTLI TKSGKVFP + DW+LL+ +I S
Sbjct: 29 GSWESKDNGDLMIFTHSECEGKEKIAAFDMDGTLIKTKSGKVFPTNCQDWQLLYDSIPSD 88
Query: 63 LKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPV 122
K+ DG+K+VIFTNQ I K+ +F+ K E I+ L +PVQ FV+ YRKP
Sbjct: 89 FKKLHSDGFKIVIFTNQKGIHAGKVDRNEFRKKIEAIVGKLGIPVQAFVSVAGGHYRKPC 148
Query: 123 PGMWEYLSQEKNGDLAIDISQSFYXXXXXXXXXXXXPKKKKDFACTDHXXXXXXXXXXXT 182
GMW L +N ++ I+ +S + + KKD + D T
Sbjct: 149 VGMWNELKL-RNDEVEINEKESIFVGDAAGRIKTTS-RPKKDHSYADRFFAANVGVKFQT 206
Query: 183 PEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPN---IPHDKKQVLIMIGSQGSGKSSF 239
PE+ F K + P F P+ ++ + ++ P+ + +K++++M+G GSGKS+F
Sbjct: 207 PEEFFGKSKVDEPWGPPNFDPKNLFSEEITELEPHDAQLKSSEKEIILMVGFPGSGKSTF 266
Query: 240 VSTYLKPLNYTTVNRDTLGSWQKCVSVMKAAL-DSVLIMI 278
+Y VNRDT+G+WQKCV+ ++ L D ++I
Sbjct: 267 AKMLGHQHDYKIVNRDTIGTWQKCVAATRSYLADGKSVVI 306
Score = 263 (97.6 bits), Expect = 1.5e-22, P = 1.5e-22
Identities = 50/103 (48%), Positives = 70/103 (67%)
Query: 267 MKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSV 326
+K++ +++M+G GSGKS+F +Y VNRDT+G+WQKCV+ ++ L G SV
Sbjct: 245 LKSSEKEIILMVGFPGSGKSTFAKMLGHQHDYKIVNRDTIGTWQKCVAATRSYLADGKSV 304
Query: 327 VVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK 369
V+DNT+PD ESR RYI+ AK+ GV MN S EHA+HNI+
Sbjct: 305 VIDNTSPDLESRKRYIDVAKELGVPIRCFEMNCSMEHAQHNIR 347
>POMBASE|SPAC23C11.04c [details] [associations]
symbol:pnk1 "DNA kinase/phosphatase Pnk1" species:4896
"Schizosaccharomyces pombe" [GO:0000718 "nucleotide-excision
repair, DNA damage removal" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0046403 "polynucleotide
3'-phosphatase activity" evidence=IDA] [GO:0046404 "ATP-dependent
polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=IDA]
PomBase:SPAC23C11.04c GO:GO:0005524 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR Gene3D:3.40.50.1000 InterPro:IPR023214
SUPFAM:SSF56784 GO:GO:0046403 GO:GO:0000718 GO:GO:0046404
InterPro:IPR006549 TIGRFAMs:TIGR01662 eggNOG:COG0241
InterPro:IPR013954 Pfam:PF08645 PIR:T38242 RefSeq:NP_593635.2
STRING:O13911 EnsemblFungi:SPAC23C11.04c.1 GeneID:2542032
HOGENOM:HOG000182000 OrthoDB:EOG47M57H NextBio:20803110
InterPro:IPR015636 InterPro:IPR006551 PANTHER:PTHR12083
TIGRFAMs:TIGR01664 Uniprot:O13911
Length = 408
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 90/275 (32%), Positives = 133/275 (48%)
Query: 5 WDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLK 64
W I D+ L + + + K +FDLDGTLI TKSG+VF D DW ++ LK
Sbjct: 50 WSITDS--LYIAKYGKLKKTKKFIAFDLDGTLIKTKSGRVFSKDAADWTWWHPSVVPKLK 107
Query: 65 QYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPG 124
D Y LVIF+NQ I RK + FQ K I +SL++P+ ++ A D++RKP+ G
Sbjct: 108 ALYQDNYSLVIFSNQNGIPRKPSAGHTFQMKIRAIFESLDLPIVLYAAILKDKFRKPLTG 167
Query: 125 MWEYLSQEKNGDLAIDISQSFYXXXXXXXXXXXXPKKKKDFACTDHXXXXXXXXXXXTPE 184
MW ++ N +ID+S Y + D TD TPE
Sbjct: 168 MWNSFLKDVNR--SIDLSFIKYVGDAAG--------RPGDHNSTDLKFAENIGIKFETPE 217
Query: 185 QIFLNEK-APDFPNLPTFKPREVYQKAQSQTIPNIPHDKK----QVLIMIGSQGSGKSSF 239
Q FL P PN +F P+ Y S + P H KK ++++++G SGKS+
Sbjct: 218 QFFLGHSFVP--PNFESFHPKN-YLVRNSSSHPY--HFKKSEHQEIVVLVGFPSSGKSTL 272
Query: 240 VSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSV 274
+ + Y VN+D L + KC+ KAA++++
Sbjct: 273 AESQIVTQGYERVNQDILKTKSKCI---KAAIEAL 304
Score = 169 (64.5 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 34/100 (34%), Positives = 56/100 (56%)
Query: 268 KAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVV 327
K+ +++++G SGKS+ + + Y VN+D L + KC+ AL SVV
Sbjct: 252 KSEHQEIVVLVGFPSSGKSTLAESQIVTQGYERVNQDILKTKSKCIKAAIEALKKEKSVV 311
Query: 328 VDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367
+DNTNP ESR +I+ A++ + +H+ S+E A+HN
Sbjct: 312 IDNTNPTIESRKMWIDIAQEFEIPIRCIHLQSSEELARHN 351
>DICTYBASE|DDB_G0281229 [details] [associations]
symbol:pnkp "putative bifunctional polynucleotide
phosphatase/kinase" species:44689 "Dictyostelium discoideum"
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISS] [GO:0005958 "DNA-dependent protein
kinase-DNA ligase 4 complex" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0046939 "nucleotide
phosphorylation" evidence=ISS] [GO:0046403 "polynucleotide
3'-phosphatase activity" evidence=ISS] [GO:0042769 "DNA damage
response, detection of DNA damage" evidence=ISS] [GO:0019201
"nucleotide kinase activity" evidence=ISS] [GO:0009314 "response to
radiation" evidence=ISS] [GO:0006979 "response to oxidative stress"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0004519
"endonuclease activity" evidence=ISS] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003034 Pfam:PF02037 PROSITE:PS50800
SMART:SM00513 dictyBase:DDB_G0281229 GO:GO:0005524 GO:GO:0006979
GenomeReviews:CM000152_GR GO:GO:0003677 Gene3D:3.40.50.1000
InterPro:IPR023214 SUPFAM:SSF56784 EMBL:AAFI02000040 GO:GO:0006261
Gene3D:1.10.720.30 GO:GO:0004519 GO:GO:0009314 GO:GO:0046403
GO:GO:0005958 GO:GO:0006303 GO:GO:0042769 InterPro:IPR006549
TIGRFAMs:TIGR01662 eggNOG:COG0241 InterPro:IPR013954 Pfam:PF08645
GO:GO:0019201 InterPro:IPR015636 InterPro:IPR006551
PANTHER:PTHR12083 TIGRFAMs:TIGR01664 KO:K08073 RefSeq:XP_640898.1
ProteinModelPortal:Q54U78 EnsemblProtists:DDB0220676 GeneID:8622956
KEGG:ddi:DDB_G0281229 InParanoid:Q54U78 OMA:GRKFPTG Uniprot:Q54U78
Length = 544
Score = 321 (118.1 bits), Expect = 2.3e-28, P = 2.3e-28
Identities = 94/281 (33%), Positives = 134/281 (47%)
Query: 3 GSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESV 62
G W I D + + +V + +KIASFD+D T+I KSGKV ++ DW +
Sbjct: 160 GKW-IRDES--VSYYLGEVLSRSKIASFDMDSTMIKNKSGKVHAINKDDWLWWDECVPKN 216
Query: 63 LKQYLDDGYKLVIFTNQGAIGR--KKMSTR--DFQAKAEKIIKSLNVPVQMFVATQYDRY 118
LKQ +DGY++VIFTNQG IG K T+ D K E + K L P+ F+A D
Sbjct: 217 LKQLYNDGYQVVIFTNQGGIGHGSKFCRTKFNDITKKIEILEKELGFPLIAFIACADDAN 276
Query: 119 RKPVPGMWEYLSQEKNGDLAIDISQSFYXXXXXXXXXXXXPKKKKDFACTDHXXXXXXXX 178
RKP MW+ + + +G + I+ S+SFY KKDF+ +D
Sbjct: 277 RKPNRKMWDMMYECTDGKVVINESESFYCGDAAGRPDGWKAGVKKDFSNSDLGFAMTVGI 336
Query: 179 XXXTPEQIFLNEK------APDFPN--LPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIG 230
TPE FL E D N +P+ P + +S +I + D + V I +G
Sbjct: 337 RFETPETHFLGESHFVLAGGDDIVNSLIPS-APTSG-KSFESDSI--VTKDFEMV-ISVG 391
Query: 231 SQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAAL 271
+GKS+F Y P Y +N+DTL +C+ AAL
Sbjct: 392 YPAAGKSTFARKYFGPAGYAIINQDTLKDKAQCLKAANAAL 432
Score = 173 (66.0 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 33/93 (35%), Positives = 52/93 (55%)
Query: 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNP 333
++I +G +GKS+F Y P Y +N+DTL +C+ AAL G SV++DNTNP
Sbjct: 386 MVISVGYPAAGKSTFARKYFGPAGYAIINQDTLKDKAQCLKAANAALAQGKSVIIDNTNP 445
Query: 334 DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKH 366
K+ R Y+ AK++ + ++ S + A H
Sbjct: 446 TKDVRAEYLALAKKYNAKARCLNFTTSFDLAMH 478
>GENEDB_PFALCIPARUM|PF13_0334 [details] [associations]
symbol:PF13_0334 "polynucleotide kinase,
putative" species:5833 "Plasmodium falciparum" [GO:0003684 "damaged
DNA binding" evidence=ISS] [GO:0006974 "response to DNA damage
stimulus" evidence=ISS] Gene3D:3.40.50.1000 InterPro:IPR023214
SUPFAM:SSF56784 GO:GO:0016301 EMBL:AL844509 InterPro:IPR006549
TIGRFAMs:TIGR01662 InterPro:IPR013954 Pfam:PF08645
InterPro:IPR015636 PANTHER:PTHR12083 KO:K08073
RefSeq:XP_001350344.1 ProteinModelPortal:Q8ID74
EnsemblProtists:PF13_0334:mRNA GeneID:814293 KEGG:pfa:PF13_0334
EuPathDB:PlasmoDB:PF3D7_1363200 HOGENOM:HOG000281734 OMA:TQLEPAD
ProtClustDB:CLSZ2444875 Uniprot:Q8ID74
Length = 462
Score = 260 (96.6 bits), Expect = 6.8e-22, P = 6.8e-22
Identities = 104/395 (26%), Positives = 175/395 (44%)
Query: 4 SWDIVDNGKL--LVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIES 61
+W+I ++ L +V D KI SFDLD TLI ++ G P + +S+I
Sbjct: 15 NWNIFEDSLLYRIVKDKEDKIYK-KIFSFDLDNTLILSR-GFFKPAQNEKDYIFYSDIIE 72
Query: 62 VLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKP 121
LK+ ++ YK++IF+NQ + K+S + + + II+ + +P++ ++A + D+YRKP
Sbjct: 73 FLKKKHEENYKIMIFSNQKGVSSGKLSLSNLINRVDDIIEKIGLPLECYLALKNDKYRKP 132
Query: 122 VPGMWEYLSQ--EKN-------GDLAIDI-----SQSF-------YXXXXXXXXXXXXPK 160
GM+ + +Q ++N GD A I Q F Y K
Sbjct: 133 RIGMYLFATQNYKQNLDEVIYVGDNANRIYDEKFKQEFINHLKYIYSKNNVNININDIYK 192
Query: 161 K-KKDFACTDHXXXXXXXXXXXTPEQIFLNEK---APDFPNLPTFKPREVYQKAQSQTIP 216
+ KKD+ TD TPE +FLN K + DF P + +E+ ++
Sbjct: 193 RLKKDYTDTDLKFALNINAKFYTPEDLFLNIKNHISTDFLFNPKYFNKELNEQENINKKN 252
Query: 217 NIPHDKKQVLIMIGSQG---SGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDS 273
N H + + SQ + K + + + P N T N +K +
Sbjct: 253 N--HFYEICMKDYHSQNENINNKKNNTNNNIIPNNQYTTN-------EKYIPPNDQ--QK 301
Query: 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNP 333
++I+IG G GK+ + Y Y +N + + KC+ V+K L +V++DN N
Sbjct: 302 LIILIGPPGCGKTFLCTNYFS--TYIRINMEEYKTISKCIQVLKEKLLQRKNVIIDNVNS 359
Query: 334 DKESRHRYIEAAKQ--HGVRCIAVHMNISKEHAKH 366
++R YI AK+ + ++ N SKE H
Sbjct: 360 LIKNRLLYINEAKKINQNIEIRLIYFNYSKELIIH 394
>TAIR|locus:2086355 [details] [associations]
symbol:AT3G14890 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR001510
Pfam:PF00645 PROSITE:PS50064 EMBL:CP002686 GO:GO:0005654
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 Gene3D:3.40.50.1000
InterPro:IPR023214 SUPFAM:SSF56784 GO:GO:0008270 GO:GO:0006281
GO:GO:0006351 GO:GO:0016301 GO:GO:0046403 EMBL:AP000370
BRENDA:3.1.3.7 Gene3D:3.30.1740.10 InterPro:IPR006549
TIGRFAMs:TIGR01662 eggNOG:COG0241 InterPro:IPR013954 Pfam:PF08645
InterPro:IPR015636 InterPro:IPR006551 PANTHER:PTHR12083
TIGRFAMs:TIGR01664 KO:K08073 EMBL:BT003865 EMBL:BT005159
EMBL:AF453835 IPI:IPI00527473 IPI:IPI00895619 RefSeq:NP_188107.3
RefSeq:NP_850586.2 UniGene:At.39147 ProteinModelPortal:Q84JE8
SMR:Q84JE8 PaxDb:Q84JE8 PRIDE:Q84JE8 EnsemblPlants:AT3G14890.1
GeneID:820718 KEGG:ath:AT3G14890 TAIR:At3g14890
HOGENOM:HOG000082825 InParanoid:Q84JE8 OMA:DSIKDHD
ProtClustDB:CLSN2680840 BRENDA:3.1.3.32 Genevestigator:Q84JE8
Uniprot:Q84JE8
Length = 694
Score = 213 (80.0 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 61/191 (31%), Positives = 92/191 (48%)
Query: 14 LVFTSND--VCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY 71
++F D + +S KIA+FD DG L T S K+ D W L++ +I L+ D GY
Sbjct: 507 VIFLERDDGLNDSEKIAAFDFDGCLAKT-SVKIVGADA--WSLMYPSIPEKLQSLHDQGY 563
Query: 72 KLVIFTNQGAIGR---KKMSTRDFQ-AKAEKIIKSLNVPVQMFVAT----------QYDR 117
KLVIFTN+ I R K+ + D + + I+ + VP+Q+F+A + D
Sbjct: 564 KLVIFTNESNIDRWKNKRQAAVDSKIGRLNSFIERVKVPIQVFIACGVSSSGGKGGKDDL 623
Query: 118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYXXXXXXXXXXXXPKKKKDFACTDHXXXXXXX 177
YRKP GMW+ + + N +AID+ +SFY +K D + D
Sbjct: 624 YRKPKAGMWQLMKKHFNSGIAIDMDKSFYVGDAAG--------RKMDHSDADIKFAQASG 675
Query: 178 XXXXTPEQIFL 188
TPE+ F+
Sbjct: 676 LKFFTPEEYFI 686
>CGD|CAL0005510 [details] [associations]
symbol:orf19.1547 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0046403 "polynucleotide
3'-phosphatase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] CGD:CAL0005510 Gene3D:3.40.50.1000 InterPro:IPR023214
SUPFAM:SSF56784 EMBL:AACQ01000008 EMBL:AACQ01000007
InterPro:IPR006549 TIGRFAMs:TIGR01662 eggNOG:COG0241
InterPro:IPR013954 Pfam:PF08645 InterPro:IPR015636
InterPro:IPR006551 PANTHER:PTHR12083 TIGRFAMs:TIGR01664 KO:K08075
RefSeq:XP_722450.1 RefSeq:XP_722590.1 ProteinModelPortal:Q5ALN0
STRING:Q5ALN0 GeneID:3635807 GeneID:3635953 KEGG:cal:CaO19.1547
KEGG:cal:CaO19.9121 Uniprot:Q5ALN0
Length = 301
Score = 161 (61.7 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 37/89 (41%), Positives = 49/89 (55%)
Query: 17 TSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIF 76
TS ++ +S K+A+FDLDGTLI+TKSG F DWK + LK D Y +VIF
Sbjct: 110 TSVEIESSIKVAAFDLDGTLISTKSGGTFSKSPSDWKWWNDKVLDKLKDLYRDNYLIVIF 169
Query: 77 TNQGAIGRKKMSTR--DFQAKAEKIIKSL 103
+NQG + S +F K I+K L
Sbjct: 170 SNQGGVVATPSSKSYLNFTTKLNSIVKEL 198
Score = 60 (26.2 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 117 RYRKPVPGMWE-YLSQEKNGDLAIDIS--QSFYXXXXXXXXXXXXPKKKKDFACTDHXXX 173
+ RKP GMW+ +L K + DI+ +SF+ + KDF+ +D
Sbjct: 235 KMRKPETGMWDTFLVDLKKYGITSDINYKESFFVGDAAG--------RSKDFSDSDALFS 286
Query: 174 XXXXXXXXTPEQIF 187
TPE++F
Sbjct: 287 KNINLKFITPEELF 300
>UNIPROTKB|Q5ALN0 [details] [associations]
symbol:PNK1 "Putative uncharacterized protein PNK1"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] CGD:CAL0005510
Gene3D:3.40.50.1000 InterPro:IPR023214 SUPFAM:SSF56784
EMBL:AACQ01000008 EMBL:AACQ01000007 InterPro:IPR006549
TIGRFAMs:TIGR01662 eggNOG:COG0241 InterPro:IPR013954 Pfam:PF08645
InterPro:IPR015636 InterPro:IPR006551 PANTHER:PTHR12083
TIGRFAMs:TIGR01664 KO:K08075 RefSeq:XP_722450.1 RefSeq:XP_722590.1
ProteinModelPortal:Q5ALN0 STRING:Q5ALN0 GeneID:3635807
GeneID:3635953 KEGG:cal:CaO19.1547 KEGG:cal:CaO19.9121
Uniprot:Q5ALN0
Length = 301
Score = 161 (61.7 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 37/89 (41%), Positives = 49/89 (55%)
Query: 17 TSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIF 76
TS ++ +S K+A+FDLDGTLI+TKSG F DWK + LK D Y +VIF
Sbjct: 110 TSVEIESSIKVAAFDLDGTLISTKSGGTFSKSPSDWKWWNDKVLDKLKDLYRDNYLIVIF 169
Query: 77 TNQGAIGRKKMSTR--DFQAKAEKIIKSL 103
+NQG + S +F K I+K L
Sbjct: 170 SNQGGVVATPSSKSYLNFTTKLNSIVKEL 198
Score = 60 (26.2 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 117 RYRKPVPGMWE-YLSQEKNGDLAIDIS--QSFYXXXXXXXXXXXXPKKKKDFACTDHXXX 173
+ RKP GMW+ +L K + DI+ +SF+ + KDF+ +D
Sbjct: 235 KMRKPETGMWDTFLVDLKKYGITSDINYKESFFVGDAAG--------RSKDFSDSDALFS 286
Query: 174 XXXXXXXXTPEQIF 187
TPE++F
Sbjct: 287 KNINLKFITPEELF 300
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 369 346 0.00098 116 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 13
No. of states in DFA: 608 (65 KB)
Total size of DFA: 239 KB (2128 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.29u 0.08s 28.37t Elapsed: 00:00:17
Total cpu time: 28.30u 0.08s 28.38t Elapsed: 00:00:17
Start: Thu Aug 15 11:34:14 2013 End: Thu Aug 15 11:34:31 2013