RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4598
(369 letters)
>3zvl_A Bifunctional polynucleotide phosphatase/kinase;
hydrolase-transferase complex, base excision repair,
BER, non-homologous END-joining, NHEJ; 1.65A {Mus
musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B*
3u7h_B* 3u7g_A*
Length = 416
Score = 260 bits (664), Expect = 6e-84
Identities = 148/370 (40%), Positives = 196/370 (52%), Gaps = 51/370 (13%)
Query: 1 MKGSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIE 60
W+ + KLLVFT++ V K+A+FDLDGTLITT+SGKVFP DW++L+ I
Sbjct: 36 SSLGWESLK--KLLVFTASGVKPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIP 93
Query: 61 SVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRK 120
L++ +GYKLVIFTNQ IGR K+ F+ K E +++ L VP Q+ VAT RK
Sbjct: 94 KKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRK 153
Query: 121 PVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAP-KKKKDFACTDHLFAFNLNLA 179
PV GMW++L ++ N + I + S + GDAAGR ANWAP +KKKDF+C D LFA N+ L
Sbjct: 154 PVSGMWDHLQEQANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLP 213
Query: 180 FFTPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSF 239
F TPE+ FL A F P F PR + + ++
Sbjct: 214 FATPEEFFLKWPAARFEL-PAFDPRTISSAGPLYLPESSSLLSPNPEVV----------- 261
Query: 240 VSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYT 299
+ +G G+GKS+F+ +L Y
Sbjct: 262 ------------------------------------VAVGFPGAGKSTFIQEHLVSAGYV 285
Query: 300 TVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNI 359
VNRDTLGSWQ+CVS +AAL G VV+DNTNPD SR RYI+ AK GV C +
Sbjct: 286 HVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCA 345
Query: 360 SKEHAKHNIK 369
+ E A+HN +
Sbjct: 346 TIEQARHNNR 355
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 83.3 bits (206), Expect = 3e-19
Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 26/148 (17%)
Query: 223 KQVLIMIGSQGSGKSSFVSTYLKP-LNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQ 281
K++++ IG GSGKS++ ++ + +NRD ++ +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY----------------RQSIMAHE 45
Query: 282 GSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRY 341
+ + G + DS V++ +TN + E R +
Sbjct: 46 ERDEYKYTKKKEG---------IVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAW 96
Query: 342 IEAAKQHGVRCIAVHMNISKEHAKHNIK 369
AK++G + ++
Sbjct: 97 ETFAKEYGWKVEHKVFDVPWTELVKRNS 124
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 75.5 bits (185), Expect = 2e-15
Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 25/119 (21%)
Query: 274 VLIMIGSQGSGKSSFVSTYLKPL-NYTTVNRDTL---------------------GSWQK 311
+++ IG GSGKS++ ++ + +NRD
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGM 63
Query: 312 CVSVMKAALDSGLS---VVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367
K+ L G S V++ +TN + E R + AK++G + ++
Sbjct: 64 QFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKR 122
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 71.8 bits (176), Expect = 2e-14
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 17/110 (15%)
Query: 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVN---------RDTLGSW--------QKCVSVM 316
++I+ G G GKS+F K L+ ++ R++ W +K +
Sbjct: 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRL 65
Query: 317 KAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKH 366
+ V+VD+TN R I AK++ +++ S +
Sbjct: 66 IDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIR 115
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily,
GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase;
HET: FX1; 1.68A {Bordetella bronchiseptica}
Length = 179
Score = 65.7 bits (161), Expect = 6e-13
Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 20/140 (14%)
Query: 30 FDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMST 89
D DG + F +W L ++++ + + + +V+ TNQ + R T
Sbjct: 6 LDRDGVVNQDSDA--FVKSPDEWIALPGSLQA-IARLTQADWTVVLATNQSGLARGLFDT 62
Query: 90 RDFQAKAEKIIKSLNVPVQMFVATQY-----DR---YRKPVPGMWEYLSQEKNGDLAIDI 141
A +K+ ++L + A D RKP+PGM+ +++ +D+
Sbjct: 63 ATLNAIHDKMHRALAQMGGVVDAIFMCPHGPDDGCACRKPLPGMYRDIARR----YDVDL 118
Query: 142 SQSFYAGD-----AAGRAAN 156
+ GD A A
Sbjct: 119 AGVPAVGDSLRDLQAAAQAG 138
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola
phosphate phosphatase, bifunctional enzyme structural
genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB:
2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Length = 176
Score = 63.8 bits (156), Expect = 2e-12
Identities = 34/148 (22%), Positives = 50/148 (33%), Gaps = 20/148 (13%)
Query: 23 NSAKIASFDLDGTLITTKSGKVFPVDT-HDWKLLFSNIESVLKQYLDDGYKLVIFTNQGA 81
+S K D DGTLI+ + F VD I L + GYKLV+ TNQ
Sbjct: 12 SSQKYLFIDRDGTLIS-EPPSDFQVDRFDKLAFEPGVIPQ-LLKLQKAGYKLVMITNQDG 69
Query: 82 IGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRY--------RKPVPGMWEYLSQEK 133
+G + DF +++ F + RKP + E E+
Sbjct: 70 LGTQSFPQADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECDCRKPKVKLVERYLAEQ 129
Query: 134 NGDLAIDISQSFYAGD-----AAGRAAN 156
+D + S+ GD
Sbjct: 130 A----MDRANSYVIGDRATDIQLAENMG 153
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein,
hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19
PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Length = 211
Score = 60.4 bits (147), Expect = 6e-11
Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 28/147 (19%)
Query: 30 FDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMST 89
D DGT+ + + +++ + + +++ G+ LV+ TNQ I R K +
Sbjct: 30 LDRDGTINVDHG---YVHEIDNFEFI-DGVIDAMRELKKMGFALVVVTNQSGIARGKFTE 85
Query: 90 RDFQAKAEKIIKSL---NVPVQMF---------VATQYDRY---RKPVPGMWEYLSQEKN 134
F+ E + SL +V + ++ + RKP PGM
Sbjct: 86 AQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDY-- 143
Query: 135 GDLAIDISQSFYAGD-----AAGRAAN 156
L ID++ S+ GD A AAN
Sbjct: 144 --LHIDMAASYMVGDKLEDMQAAVAAN 168
>2o2x_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP:
c.108.1.19
Length = 218
Score = 59.7 bits (145), Expect = 1e-10
Identities = 36/147 (24%), Positives = 52/147 (35%), Gaps = 28/147 (19%)
Query: 30 FDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMST 89
D DGT+ +P D + L + + G +V+ TNQ I R
Sbjct: 36 LDRDGTINVDTD---YPSDPAEIVLR-PQMLPAIATANRAGIPVVVVTNQSGIARGYFGW 91
Query: 90 RDFQAKAEKIIKSL---NVPVQMF---------VATQYDRY---RKPVPGMWEYLSQEKN 134
F A ++++ L V V M V RKP PGM +
Sbjct: 92 SAFAAVNGRVLELLREEGVFVDMVLACAYHEAGVGPLAIPDHPMRKPNPGMLVEAGKR-- 149
Query: 135 GDLAIDISQSFYAGD-----AAGRAAN 156
LA+D+ +S GD AG+ A
Sbjct: 150 --LALDLQRSLIVGDKLADMQAGKRAG 174
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 58.0 bits (140), Expect = 3e-10
Identities = 14/117 (11%), Positives = 31/117 (26%), Gaps = 21/117 (17%)
Query: 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL---------------------GSWQKC 312
++I+ G +GK++ L +++D +
Sbjct: 7 LIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMML 66
Query: 313 VSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK 369
L SG S+++++ R I + S + I
Sbjct: 67 YHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERIL 123
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 8e-08
Identities = 37/298 (12%), Positives = 75/298 (25%), Gaps = 106/298 (35%)
Query: 131 QEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPEQIFLNE 190
Q + D+ +F +F C D
Sbjct: 15 QYQYKDILSVFEDAF----------------VDNFDCKD--------------------- 37
Query: 191 KAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIG----SQGSGKSSFVSTYLKP 246
D P + + K + I L + Q FV L+
Sbjct: 38 -VQDMP-------KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 247 LNYT-------TVNRDTLGSWQ------------------------KCVSVMKAALDSV- 274
NY T R + + ++ AL +
Sbjct: 90 -NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 275 ----LIMIGSQGSGKSSFVSTYLKPLNYTTVNRD-----TLGSWQKCVSVMK------AA 319
+++ G GSGK+ L + +V++
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 320 LDSGLSVVVDNTNPDK------ESRHRYIEAAKQHGVRCIAVHMNI-SKEHAKH-NIK 369
+D + D+++ K ++ R + +K + C+ V +N+ + + N+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFNLS 265
Score = 51.0 bits (121), Expect = 5e-07
Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 44/147 (29%)
Query: 13 LLVFTSNDVCNSAKIASFDLD-GTLITTKSGKVF-----------PVDTHDWKLLFSNIE 60
LLV +V N+ +F+L L+TT+ +V +D H L ++
Sbjct: 247 LLVL--LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 61 SVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRY 118
S+L +YLD +D + P + + + D
Sbjct: 305 SLLLKYLD------------------CRPQDLPREVLTTN-----PRRLSIIAESIRDG- 340
Query: 119 RKPVPGMWEYLSQEKNGDLAIDISQSF 145
W+ L I S
Sbjct: 341 ----LATWDNWKHVNCDKLTTIIESSL 363
Score = 41.8 bits (97), Expect = 3e-04
Identities = 60/388 (15%), Positives = 125/388 (32%), Gaps = 99/388 (25%)
Query: 16 FTSNDVCNSAK--IASFDLDGTLIT----TKSGKVFPVDTHDWKLLFSNIESVLKQYLDD 69
F DV + K ++ ++D +++ + + ++F W LL E ++++++++
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF------WTLLSKQ-EEMVQKFVEE 85
Query: 70 G----YKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYR-KPVPG 124
YK ++ + + M TR + + +++ Q+F +Y+ R +P
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND----NQVF--AKYNVSRLQPYLK 139
Query: 125 MWEYLSQ-EKNGDLAIDISQSFYAGDA-AGR---AANWAPKKKKDFACTDH----LFAFN 175
+ + L + ++ ID G +G+ A + C + F
Sbjct: 140 LRQALLELRPAKNVLID-------GVLGSGKTWVALD---------VCLSYKVQCKMDFK 183
Query: 176 ---LNLA-FFTPEQIFLNEKAPDFPNLPT-FKPREVYQKAQSQTIPNIPHDKKQVLIMIG 230
LNL +PE + + L P + S I H + L +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQ-----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 231 SQGSGKSSFV-------STYLKPLNY------TTVNR---DTLGSWQKCVSVMKAALDSV 274
++ + + N TT + D L + + ++
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 275 LIMIGSQGSGKSSFVSTYLK------PLNYTTVN-----------RDTLGSWQKCVSVMK 317
+ KS YL P T N RD L +W V
Sbjct: 299 -----TPDEVKSLL-LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 318 AALDSGLSVVVDNTNPDKESRHRYIEAA 345
L + + ++ P E R + +
Sbjct: 353 DKLTTIIESSLNVLEPA-EYRKMFDRLS 379
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 50.7 bits (120), Expect = 2e-07
Identities = 15/148 (10%), Positives = 44/148 (29%), Gaps = 27/148 (18%)
Query: 219 PHDKKQVLIMIGSQGSGKSSFVSTYLKPL--NYTTVNRDTLGSWQKCVSVMKAALDSVLI 276
+ +++ G G+GK++ K N ++ D+ ++ L
Sbjct: 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF----------RSQHPHYLE 77
Query: 277 MIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKE 336
+ G + + + + S++ G +++++ T +
Sbjct: 78 LQQEYGKDSVEYTKDF---------------AGKMVESLVTKLSSLGYNLLIEGTLRTVD 122
Query: 337 SRHRYIEAAKQHGVRCIAVHMNISKEHA 364
+ + K G + E +
Sbjct: 123 VPKKTAQLLKNKGYEVQLALIATKPELS 150
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 45.4 bits (106), Expect = 1e-05
Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 27/148 (18%)
Query: 219 PHDKKQVLIMIGSQGSGKSSFVSTYLKPL--NYTTVNRDTLGSWQKCVSVMKAALDSVLI 276
+ ++ G GSGK+S S + N ++ DT K +
Sbjct: 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF----------KQQHPNFDE 78
Query: 277 MIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKE 336
++ V+ Y S + +++ D G ++V++ T +
Sbjct: 79 LVKLYEKDVVKHVTPY---------------SNRMTEAIISRLSDQGYNLVIEGTGRTTD 123
Query: 337 SRHRYIEAAKQHGVRCIAVHMNISKEHA 364
+ + G M + K ++
Sbjct: 124 VPIQTATMLQAKGYETKMYVMAVPKINS 151
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 35.5 bits (81), Expect = 0.012
Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 22/138 (15%)
Query: 222 KKQVLIMIGSQGSGKSSFVST--YLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIG 279
+++I+ G +GKS V + P + D+L M + S I
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA------MPLKMQSAEGGIE 55
Query: 280 SQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNT-NPDKESR 338
G S + R G+W + V A +G +++D+ ++
Sbjct: 56 FDADGGVSIGPEF----------RALEGAWAEGV---VAMARAGARIIIDDVFLGGAAAQ 102
Query: 339 HRYIEAAKQHGVRCIAVH 356
R+ V + V
Sbjct: 103 ERWRSFVGDLDVLWVGVR 120
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR
initiative, PSI, midwest center for structural genomics,
UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP:
c.108.1.18
Length = 126
Score = 32.9 bits (75), Expect = 0.047
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 11/74 (14%)
Query: 30 FDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMST 89
DLDGTL + D + IE L++Y G+++VI T R +
Sbjct: 6 VDLDGTLTQANTS-----DYRNVLPRLDVIE-QLREYHQLGFEIVIST-----ARNMRTY 54
Query: 90 RDFQAKAEKIIKSL 103
K +
Sbjct: 55 EGNVGKINIHTLPI 68
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics,
joint center structural genomics, JCSG, protein
structure initiative; HET: MSE; 1.50A {Listeria
monocytogenes}
Length = 373
Score = 34.5 bits (80), Expect = 0.049
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 10/40 (25%)
Query: 105 VPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQS 144
V + + + Y + + + DL I ISQS
Sbjct: 78 VRITIEEPFNH-LYYEKLSS---------HLDLVIGISQS 107
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET:
GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB:
1mor_A* 1mos_A*
Length = 368
Score = 34.4 bits (80), Expect = 0.055
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 10/40 (25%)
Query: 105 VPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQS 144
+P + +A+++ RYRK L I +SQS
Sbjct: 80 IPCDVEIASEF-RYRKSAVR---------RNSLMITLSQS 109
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing];
structural genomics; 2.28A {Francisella tularensis
subsp}
Length = 372
Score = 34.0 bits (79), Expect = 0.060
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 10/40 (25%)
Query: 105 VPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQS 144
VP + +A++ RYR V +G L + ISQS
Sbjct: 82 VPCSVEIASEI-RYRDNVVV---------DGSLFVSISQS 111
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing];
amidotransferase, ammonia channeling, glucosamine 6-
phosphate synthase; HET: F6R; 2.05A {Escherichia coli}
SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X
2vf5_X* 3ooj_A*
Length = 608
Score = 34.0 bits (79), Expect = 0.086
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 10/40 (25%)
Query: 105 VPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQS 144
+P + +A+++ RYRK L I +SQS
Sbjct: 320 IPCDVEIASEF-RYRKSAVR---------RNSLMITLSQS 349
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans
OS217}
Length = 334
Score = 32.9 bits (76), Expect = 0.13
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 9/40 (22%)
Query: 105 VPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQS 144
+P + Y K + G L I ISQS
Sbjct: 70 IPTFAAAPSVASVYGKTLKL---------AGGLVIVISQS 100
>3knz_A Putative sugar binding protein; structural genomics, joint C
structural genomics, JCSG, protein structure initiative;
2.50A {Salmonella enterica subsp}
Length = 366
Score = 32.9 bits (76), Expect = 0.16
Identities = 6/40 (15%), Positives = 9/40 (22%), Gaps = 10/40 (25%)
Query: 105 VPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQS 144
+PV + L + ISQ
Sbjct: 78 LPVDVCWPFML-DDETLARS---------GKALVVGISQG 107
>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat
transaminase (isomerizing); glucosamine-6-phosphate
synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB:
2put_A* 2puv_A* 2puw_A*
Length = 367
Score = 32.8 bits (76), Expect = 0.17
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 11/50 (22%)
Query: 96 AEKIIKSL-NVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQS 144
I + L +PV + +A+ + R+ D + +SQS
Sbjct: 68 TRSIFEELTEIPVSVELASDF-LDRRSPVF---------RDDTCVFVSQS 107
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 31.9 bits (72), Expect = 0.18
Identities = 15/118 (12%), Positives = 40/118 (33%), Gaps = 27/118 (22%)
Query: 274 VLIMIGSQGSGKSSFVSTYL-KPLNYTTVNRDTLGS--------------------W-QK 311
+ +++G GSGKS+ V++ + L+ ++ D L W Q
Sbjct: 10 IYVLMGVSGSGKSA-VASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQA 68
Query: 312 CVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK 369
A + ++ + + Y + ++ +++ + + +K
Sbjct: 69 LNDAAFAMQRTNKVSLIVCSAL----KKHYRDLLREGNPNLSFIYLKGDFDVIESRLK 122
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure
initiative, midwest center for structural genomic
unknown function; 2.20A {Bacteroides thetaiotaomicron}
SCOP: c.108.1.25
Length = 142
Score = 31.5 bits (71), Expect = 0.20
Identities = 13/99 (13%), Positives = 35/99 (35%), Gaps = 10/99 (10%)
Query: 23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAI 82
++A + D DGT++ + ++ + + +E LK + ++L++++ +
Sbjct: 1 SNAMTIAVDFDGTIVEHRYPRI-------GEEIPFAVE-TLKLLQQEKHRLILWSVRE-- 50
Query: 83 GRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKP 121
G ++ + N RK
Sbjct: 51 GELLDEAIEWCRARGLEFYAANKDYPEEERDHQGFSRKL 89
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate
dehalogenase enzyme superfamily, phosphohydrol
hydrolase; 1.82A {Bacteroides thetaiotaomicron}
Length = 268
Score = 32.1 bits (74), Expect = 0.22
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 11/50 (22%)
Query: 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVI 75
K+ D+DGTL++ ++ KV S+I+ LK+ D G K+VI
Sbjct: 13 KVLLLDVDGTLLSFETHKVSQ----------SSID-ALKKVHDSGIKIVI 51
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.10A {Streptococcus pneumoniae}
SCOP: c.108.1.6
Length = 207
Score = 31.8 bits (73), Expect = 0.22
Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 26/110 (23%)
Query: 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQ 114
L VL + G + I+T+ K + A I+K L V F
Sbjct: 86 LMPGAREVLAWADESGIQQFIYTH-------KGNN------AFTILKDLGVE-SYFTEIL 131
Query: 115 ---YDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGD-----AAGRAAN 156
RKP P YL + ++ ++Y GD + +
Sbjct: 132 TSQSGFVRKPSPEAATYLLDK----YQLNSDNTYYIGDRTLDVEFAQNSG 177
Score = 27.5 bits (62), Expect = 5.7
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 30 FDLDGTLI 37
+DLDGTL+
Sbjct: 9 WDLDGTLL 16
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase,
2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A
{Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Length = 328
Score = 32.3 bits (74), Expect = 0.23
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 315 VMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAK 365
A +++G+ VV N E +I ++HGV+ I H + HA
Sbjct: 88 YRAAIIEAGIRVVETAGNDPGE----HIAEFRRHGVKVI--HKCTAVRHAL 132
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural
genomics, protein structure initiative; 1.93A
{Clostridium acetobutylicum}
Length = 226
Score = 31.8 bits (73), Expect = 0.24
Identities = 29/188 (15%), Positives = 47/188 (25%), Gaps = 78/188 (41%)
Query: 30 FDLDGTLITTKSG-----------------------------------KVFPVD------ 48
FDLDGTL + G + + D
Sbjct: 9 FDLDGTLTDSAEGITKSVKYSLNKFDIQVEDLSSLNKFVGPPLKTSFMEYYNFDEETATV 68
Query: 49 ----------THDWKL--LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKA 96
++ IE++L D G+ LV+ T+ K F +
Sbjct: 69 AIDYYRDYFKAKGMFENKVYDGIEALLSSLKDYGFHLVVATS-------KP--TVF---S 116
Query: 97 EKIIKSLNVPVQMFVAT---QYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGD---- 149
++I++ F A D + Y + L I + GD
Sbjct: 117 KQILEHFK-LAFYFDAIVGSSLDGKLSTKEDVIRYAMES----LNIKSDDAIMIGDREYD 171
Query: 150 -AAGRAAN 156
N
Sbjct: 172 VIGALKNN 179
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown
function; 1.00A {Bacteroides thetaiotaomicron} SCOP:
c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Length = 261
Score = 31.7 bits (73), Expect = 0.28
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVI 75
K FD+DGTL++ ++ ++ S IE L+ G K+ I
Sbjct: 3 KALFFDIDGTLVSFETHRIPS----------STIE-ALEAAHAKGLKIFI 41
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1;
glucosamine-6-phosphate synthase, aldose/ketose
isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo
sapiens} PDB: 2zj4_A* 2v4m_A*
Length = 375
Score = 32.1 bits (74), Expect = 0.28
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 10/40 (25%)
Query: 105 VPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQS 144
+PV + +A+ + R D+ +SQS
Sbjct: 88 LPVMVELASDF-LDRNTPVF---------RDDVCFFLSQS 117
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative
phosphosugar isomerase, structural genomics, joint for
structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus
subtilis}
Length = 329
Score = 31.8 bits (73), Expect = 0.35
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 11/48 (22%)
Query: 97 EKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQS 144
++ KS + ++ A ++ R PV L + L I S S
Sbjct: 48 DRESKS--INSDLYSANEF-IQRNPVQ-----LGE---KSLVILCSHS 84
>3fvv_A Uncharacterized protein; unknown function, structural genomics,
PSI,MCSG, protein STR initiative, midwest center for
structural genomics; 2.10A {Bordetella pertussis}
Length = 232
Score = 31.2 bits (71), Expect = 0.42
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 26 KIASFDLDGTLITTKSGKVF 45
++A FDLD TL+ S +
Sbjct: 5 RLALFDLDHTLLPLDSDYQW 24
>3bbl_A Regulatory protein of LACI family; protein structure initiative II,
PSI-II, NYSGXRC, transcript regulator, periplasmic
binding protein; 2.35A {Chloroflexus aggregans}
Length = 287
Score = 31.0 bits (71), Expect = 0.47
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 314 SVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGV 350
S+++ A V+ + D+ Y + + V
Sbjct: 29 SMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNV 65
>3kke_A LACI family transcriptional regulator; structural genomics,
DNA-binding, transcription regulation, PSI-2; 2.20A
{Mycobacterium smegmatis str}
Length = 303
Score = 31.4 bits (72), Expect = 0.47
Identities = 4/33 (12%), Positives = 9/33 (27%)
Query: 318 AALDSGLSVVVDNTNPDKESRHRYIEAAKQHGV 350
AA V++ + + + V
Sbjct: 40 AASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRV 72
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 30.1 bits (67), Expect = 0.73
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 28/113 (24%)
Query: 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVN-----------------------RDTLGSW 309
++L++ G GSGKS+ V+ +
Sbjct: 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIM 69
Query: 310 QKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKE 362
Q V G V++D R ++ A + + +
Sbjct: 70 QIAADVAGRYAKEGYFVILDGV-----VRPDWLPAFTALARPLHYIVLRTTAA 117
>3miz_A Putative transcriptional regulator protein, LACI family; LACL
family, protein structure initiative II (PSI II),
NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Length = 301
Score = 30.2 bits (69), Expect = 0.83
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 315 VMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGV 350
+ A +G ++++ NT E + + H +
Sbjct: 36 IQDWANANGKTILIANTGGSSEREVEIWKMFQSHRI 71
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.94
Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 32/128 (25%)
Query: 237 SSFVSTYLKPLNYTT--VNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLK 294
++ K L Y + V +G + V+ L F + YL+
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFD---QVLNLCLTE--------------FENCYLE 97
Query: 295 -------PLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQ 347
N TL K ++K + + ++ DK+S A +
Sbjct: 98 GNDIHALAAKLLQENDTTLV---KTKELIKNYITA---RIMAKRPFDKKSNSALFRAVGE 151
Query: 348 HGVRCIAV 355
+ +A+
Sbjct: 152 GNAQLVAI 159
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 30.2 bits (69), Expect = 0.97
Identities = 5/42 (11%), Positives = 17/42 (40%)
Query: 323 GLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHA 364
G + V + +E I+ + + + V ++++ +
Sbjct: 26 GFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKAN 67
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain
12444, SGX, transferase; 2.50A {Novosphingobium
aromaticivorans}
Length = 482
Score = 30.6 bits (69), Expect = 0.98
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 24 SAKIASFDLDGTLITTKSGKVFPVDTHDWK-----LLFSNIESVLKQYLDDGYKLVIFTN 78
+K++ +DLDG ++ + P++ + + VL +Y D ++
Sbjct: 17 LSKVSLWDLDGRMLDRQVRPSIPLEIDGIRRLDAPDTGRWLLDVLSRYADHPVTTIVPVG 76
Query: 79 QGA 81
GA
Sbjct: 77 HGA 79
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 30.0 bits (67), Expect = 1.1
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 219 PHDKKQVLIMIGSQGSGKSSFVSTYL 244
P + + ++++G G+GKS+ ++ L
Sbjct: 25 PRNSQLRIVLVGKTGAGKSATGNSIL 50
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Bacteroides
fragilis nctc 9343}
Length = 225
Score = 29.8 bits (68), Expect = 1.2
Identities = 18/110 (16%), Positives = 27/110 (24%), Gaps = 25/110 (22%)
Query: 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQ 114
LF + L G ++ I + K R +++ P F
Sbjct: 90 LFPDTLPTLTHLKKQGIRIGIIST-------KY--RFR---ILSFLRNHM-PDDWFDIII 136
Query: 115 YDR---YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGD-----AAGRAAN 156
+ KP P L + Y GD AA
Sbjct: 137 GGEDVTHHKPDPEGLLLAIDR----LKACPEEVLYIGDSTVDAGTAAAAG 182
Score = 27.5 bits (62), Expect = 6.0
Identities = 5/8 (62%), Positives = 5/8 (62%)
Query: 30 FDLDGTLI 37
FD D TL
Sbjct: 11 FDFDYTLA 18
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics,
oxidoreductase, flavoprotein; HET: FMN; 1.70A
{Streptococcus pneumoniae} PDB: 2z6j_A*
Length = 332
Score = 30.0 bits (68), Expect = 1.2
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 315 VMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAK 365
++ ++ G+ VV + Y+E + G+ I + S AK
Sbjct: 80 IVDLVIEEGVKVVTTGAGNPSK----YMERFHEAGIIVI--PVVPSVALAK 124
>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding
protein, NPPSFA, national on protein structural and
functional analyses; 1.35A {Pyrococcus horikoshii} PDB:
2dec_A* 2df8_A 2cb0_A*
Length = 325
Score = 30.2 bits (69), Expect = 1.2
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 7/28 (25%)
Query: 117 RYRKPVPGMWEYLSQEKNGDLAIDISQS 144
Y K + E +LA+ IS+S
Sbjct: 69 LYSKETYPIGE-------VELAVGISRS 89
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative; HET: MSE; 1.75A {Silicibacter pomeroyi
dss-3}
Length = 344
Score = 29.8 bits (68), Expect = 1.4
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 9/40 (22%)
Query: 105 VPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQS 144
+PV + Y + + L + +SQS
Sbjct: 71 LPVASLGPSVASVYDARLRL---------DRALCLAVSQS 101
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.80A {Thermus thermophilus}
Length = 276
Score = 29.8 bits (68), Expect = 1.4
Identities = 1/33 (3%), Positives = 6/33 (18%)
Query: 318 AALDSGLSVVVDNTNPDKESRHRYIEAAKQHGV 350
L+ + + + +
Sbjct: 24 VLLEQRYDLALFPILSLARLKRYLENTTLAYLT 56
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid
dehalogenase like hydrolase, mannosylglycerate,
cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus
horikoshii} PDB: 1wzc_A
Length = 249
Score = 29.4 bits (65), Expect = 1.4
Identities = 7/68 (10%), Positives = 26/68 (38%), Gaps = 19/68 (27%)
Query: 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRK 85
++ D+D TLI ++ + ++++ D G++++ + +
Sbjct: 3 RLIFLDIDKTLI----------PGYEP----DPAKPIIEELKDMGFEIIFNS-----SKT 43
Query: 86 KMSTRDFQ 93
+ ++
Sbjct: 44 RAEQEYYR 51
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein,
PSI, MCSG, structural genomi protein structure
initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae}
PDB: 3rf6_A*
Length = 352
Score = 29.8 bits (66), Expect = 1.5
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 21/78 (26%)
Query: 30 FDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMST 89
FD+DG L + K LK + ++ TN
Sbjct: 18 FDIDGVLF--RGKKPIA-----------GASDALKLLNRNKIPYILLTNG--------GG 56
Query: 90 RDFQAKAEKIIKSLNVPV 107
+A+ E I L+V V
Sbjct: 57 FSERARTEFISSKLDVDV 74
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Length = 347
Score = 29.5 bits (67), Expect = 1.7
Identities = 5/40 (12%), Positives = 11/40 (27%), Gaps = 9/40 (22%)
Query: 105 VPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQS 144
+ V + ++ + P + I SQ
Sbjct: 69 LAVGYITSNEF-VHATPKA--------LGKNSVVILASQQ 99
>3sd7_A Putative phosphatase; structural genomics, haloacid
dehalogenase-like hydrolase, H center for structural
genomics of infectious diseases; HET: PGE; 1.70A
{Clostridium difficile}
Length = 240
Score = 29.1 bits (66), Expect = 1.7
Identities = 27/187 (14%), Positives = 49/187 (26%), Gaps = 76/187 (40%)
Query: 30 FDLDGTLITTKSG----------------------------------KVFPVD------- 48
FDLDGTL K G + + +
Sbjct: 34 FDLDGTLTDPKEGITKSIQYSLNSFGIKEDLENLDQFIGPPLHDTFKEYYKFEDKKAKEA 93
Query: 49 ---------THDWKL--LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAE 97
++ N++ +L+ +G L++ T+ K F AE
Sbjct: 94 VEKYREYFADKGIFENKIYENMKEILEMLYKNGKILLVATS-------KP--TVF---AE 141
Query: 98 KIIKSLNVPVQMFVAT---QYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGD----- 149
I++ + + F D R + +Y+ N D + GD
Sbjct: 142 TILRYFD-IDRYFKYIAGSNLDGTRVNKNEVIQYVLDLCN---VKDKDKVIMVGDRKYDI 197
Query: 150 AAGRAAN 156
+
Sbjct: 198 IGAKKIG 204
>3bil_A Probable LACI-family transcriptional regulator; structural
genomics, unknown function, PSI-2, protein structure
initiative; 2.50A {Corynebacterium glutamicum atcc
13032}
Length = 348
Score = 29.4 bits (67), Expect = 2.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 318 AALDSGLSVVVDNTNPDKESRHRYIEAAKQHGV 350
A +GL+ ++ N+N D + +E HGV
Sbjct: 91 TASKAGLATIITNSNEDATTMSGSLEFLTSHGV 123
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Length = 326
Score = 29.2 bits (66), Expect = 2.0
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 315 VMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAK 365
++K ++ + VV + YI K++G + I + S A+
Sbjct: 94 LVKVCIEEKVPVVTFGAGNPTK----YIRELKENGTKVI--PVVASDSLAR 138
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 29.2 bits (65), Expect = 2.0
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 221 DKKQVLIMIGSQGSGKSSFVSTYLK--PLNYTTVNRDTLGSWQKCVS 265
++L+M G GSGKSS S T T+ +
Sbjct: 2 LGSKLLLM-GRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLR 47
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP:
c.108.1.6
Length = 243
Score = 29.1 bits (66), Expect = 2.2
Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 27/111 (24%)
Query: 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQ 114
L+ N++ L+ GY L + TN K + I+ + +F
Sbjct: 115 LYPNVKETLEALKAQGYILAVVTN------K------PTKHVQPILTAFG-IDHLFSEML 161
Query: 115 YDR---YRKPVP-GMWEYLSQEKNGDLAIDISQSFYAGD-----AAGRAAN 156
+ KP P + + + Q + GD A +A
Sbjct: 162 GGQSLPEIKPHPAPFYYLCGK-----FGLYPKQILFVGDSQNDIFAAHSAG 207
Score = 27.9 bits (63), Expect = 5.2
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 30 FDLDGTLITT 39
FDLDGTL+ +
Sbjct: 28 FDLDGTLVNS 37
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolas structural genomics, joint
center for structural genomics; HET: MSE; 2.10A
{Clostridium difficile}
Length = 274
Score = 28.7 bits (65), Expect = 2.4
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 17/59 (28%)
Query: 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGR 84
K+ D+DGTL + + S ++ + +VI T GR
Sbjct: 6 KLLILDIDGTLR-----------DEVYGIPESAKH-AIRLCQKNHCSVVICT-----GR 47
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 28.7 bits (65), Expect = 2.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 221 DKKQVLIMIGSQGSGKSSF 239
V+ +IGS GSGKS+F
Sbjct: 30 RAGDVISIIGSSGSGKSTF 48
Score = 27.9 bits (63), Expect = 5.1
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 274 VLIMIGSQGSGKSSF 288
V+ +IGS GSGKS+F
Sbjct: 34 VISIIGSSGSGKSTF 48
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 28.9 bits (64), Expect = 2.5
Identities = 4/41 (9%), Positives = 19/41 (46%)
Query: 217 NIPHDKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL 257
+ + ++ ++ G+ + ++ P+N + +D++
Sbjct: 113 ALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSI 153
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.6
Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 5/17 (29%)
Query: 53 KLLFSNIESVLKQYLDD 69
KL ++ LK Y DD
Sbjct: 24 KL-----QASLKLYADD 35
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase,
protein phosphatase, hydrolase, magne metal-binding;
1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Length = 187
Score = 28.5 bits (63), Expect = 2.6
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 28/123 (22%)
Query: 17 TSNDVCNSAKIASFDLDGTL-----------ITTKSGKVFPVDTHDWKL-LFSNIESVLK 64
+ K+A FDLD TL KS D + L+ + VLK
Sbjct: 19 YFQSMARLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLK 78
Query: 65 QYLDDGYKLVI--FTNQGAIGRKKMSTRD----FQAKA----------EKIIKSLNVPVQ 108
+ G T++ + + D F + E++ + +P
Sbjct: 79 RLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFS 138
Query: 109 MFV 111
+
Sbjct: 139 QMI 141
>3c3k_A Alanine racemase; structural genomics, protein structure
initiative, NEW YORK research center for structural
genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Length = 285
Score = 28.7 bits (65), Expect = 2.9
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 318 AALDSGLSVVVDNTNPDKESRHRYIEAAKQHGV 350
A +G +++ NT D + V
Sbjct: 33 TAEKNGYRILLCNTESDLARSRSCLTLLSGKMV 65
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 28.7 bits (65), Expect = 2.9
Identities = 6/25 (24%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 342 IEAAKQHGVRCIAVHMNISKEHAKH 366
+ A +++ V + + +SK A H
Sbjct: 80 MRAVEKYDVNVVGL--TLSKNQANH 102
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of
haloacid dehalogenase-LI superfamily; HET: MSE PG4;
1.66A {Deinococcus radiodurans R1}
Length = 200
Score = 28.5 bits (64), Expect = 3.0
Identities = 13/108 (12%), Positives = 28/108 (25%), Gaps = 20/108 (18%)
Query: 50 HDWKLLFSNIESVLKQYLDDGYKLVIFTNQGA-IGRKKMSTRDFQAKAEKIIKSLNVPVQ 108
+ + ++ + L Y++ N+G + ++ T S
Sbjct: 82 EEQSQPRPEVLALAR-DLGQRYRMYSLNNEGRDLNEYRIRTFGLGEFLLAFFTS------ 134
Query: 109 MFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAAN 156
KP P M+ + ++ D R N
Sbjct: 135 -----SALGVMKPNPAMYRLGLTL----AQVRPEEAVMVDD---RLQN 170
Score = 26.9 bits (60), Expect = 7.8
Identities = 11/106 (10%), Positives = 27/106 (25%), Gaps = 13/106 (12%)
Query: 30 FDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMST 89
+D+ G L+T D + + + G +M+
Sbjct: 9 WDIGGVLLT------NGWDREQRADVAQRFGLDTDDFTERHRLAAPELELG-----RMTL 57
Query: 90 RDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNG 135
++ + + + F A + +P P +
Sbjct: 58 AEYLEQVVFYQP-RDFTPEDFRAV-MEEQSQPRPEVLALARDLGQR 101
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Aquifex
aeolicus} PDB: 2yy6_A
Length = 222
Score = 28.3 bits (64), Expect = 3.1
Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 27/111 (24%)
Query: 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQ 114
+ I L+ G+KL + +N K+ + ++KI+ LN+ F
Sbjct: 84 PYPEIPYTLEALKSKGFKLAVVSN-------KL-----EELSKKILDILNLS-GYFDLIV 130
Query: 115 YDR---YRKPVP-GMWEYLSQEKNGDLAIDISQSFYAGD-----AAGRAAN 156
+KP P + + L L + ++ GD AG+ A
Sbjct: 131 GGDTFGEKKPSPTPVLKTLEI-----LGEEPEKALIVGDTDADIEAGKRAG 176
Score = 27.9 bits (63), Expect = 4.6
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 30 FDLDGTLITT 39
FDLDGTLI +
Sbjct: 8 FDLDGTLIDS 17
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 28.8 bits (64), Expect = 3.2
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 57 SNIESVLKQYLDDGYKLVIFTNQ--GAIGRKKMSTRDFQAKAEKIIKSLNVPVQMF 110
E+VL+Q L + K V+ N+ A+ ++S D + ++S+NV V +
Sbjct: 137 VQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTY 192
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A*
3r09_A*
Length = 205
Score = 28.3 bits (64), Expect = 3.3
Identities = 29/171 (16%), Positives = 46/171 (26%), Gaps = 61/171 (35%)
Query: 30 FDLDGTLITT--------------------KSGKVFPVDTHDWKL--------------- 54
FD+DGTL P D K
Sbjct: 11 FDMDGTLTIAVHDFAAIREALSIPAEDDILTHLAALPADESAAKHAWLLEHERDLAQGSR 70
Query: 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQ 114
++++ GY+L I T R+ A ++++ + F
Sbjct: 71 PAPGAVELVRELAGRGYRLGILTR-------NA--REL---AHVTLEAIGLA-DCFAEAD 117
Query: 115 Y----DRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGD-----AAGRAAN 156
+ KP PG L++ + S+ GD GRAA
Sbjct: 118 VLGRDEAPPKPHPGGLLKLAEA----WDVSPSRMVMVGDYRFDLDCGRAAG 164
>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase,
haloalkanoid acid dehalogenase-like phosphatase,
crystallographic snapshot; HET: 2M8; 1.74A {Thermus
thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A*
3zwd_A* 3zwk_A 3zup_A* 3zx5_A*
Length = 259
Score = 28.4 bits (63), Expect = 3.6
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 26/65 (40%)
Query: 13 LLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYK 72
++VFT DLDGTL+ + + L++ G
Sbjct: 1 MIVFT-------------DLDGTLLD---------ERGEL----GPAREALERLRALGVP 34
Query: 73 LVIFT 77
+V T
Sbjct: 35 VVPVT 39
>3gv0_A Transcriptional regulator, LACI family; transcription regulator,
PSI-II, structural genomics structure initiative; 2.35A
{Agrobacterium tumefaciens str}
Length = 288
Score = 28.3 bits (64), Expect = 3.6
Identities = 4/36 (11%), Positives = 10/36 (27%)
Query: 315 VMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGV 350
+ + + +VV K+S +
Sbjct: 32 ITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSA 67
>1l6r_A Hypothetical protein TA0175; structural genomics, putative
hydrolas midwest center for structural genomics, MCSG,
PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10
PDB: 1kyt_A
Length = 227
Score = 28.3 bits (64), Expect = 3.7
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 12/50 (24%)
Query: 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVI 75
++A+ D+DG L D + IE ++ G + +
Sbjct: 6 RLAAIDVDGNLT-----------DRDRLISTKAIE-SIRSAEKKGLTVSL 43
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3,
haloacid dehalogenase-like hydrolase domain containin
structural genomics; 1.55A {Homo sapiens}
Length = 263
Score = 28.2 bits (63), Expect = 3.7
Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 21/109 (19%)
Query: 55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQ 114
+ E L++ G +L + +N + + + ++ S
Sbjct: 107 VLDGAEDTLRECRTRGLRLAVISNFDRRLEGILGGLGLREHFDFVLTSEAAGW------- 159
Query: 115 YDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGD------AAGRAANW 157
KP P +++ + ++ + + GD RA
Sbjct: 160 ----PKPDPRIFQEALRL----AHMEPVVAAHVGDNYLCDYQGPRAVGM 200
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST
genomics, PSI-2, protein structure initiative; 1.80A
{Chlorobaculum tepidum} SCOP: c.108.1.6
Length = 234
Score = 28.1 bits (63), Expect = 3.7
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 30 FDLDGTLITT 39
FD+DGTL+
Sbjct: 9 FDIDGTLLKV 18
Score = 28.1 bits (63), Expect = 4.0
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 342 IEAAKQHGVRCIAV 355
I A++ R IAV
Sbjct: 183 IRCARELDARSIAV 196
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 28.1 bits (62), Expect = 3.7
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 210 AQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVSTYL-KPLNYTTVNRDTL 257
+ ++ ++++G GSGKSS V + + Y + D L
Sbjct: 5 IEYKSEAAAVRRFPGSIVVMGVSGSGKSS-VGEAIAEACGYPFIEGDAL 52
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 28.0 bits (62), Expect = 4.0
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 208 QKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVSTYLK--PLNYTTVNRDTLGSWQKCVS 265
S K ++++G + SGKSS N T T ++ +S
Sbjct: 5 HHHSSGRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDIS 64
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 28.4 bits (63), Expect = 4.0
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 220 HDKKQVLIMIGSQGSGKSSFVSTYLKPL-NYTTVNRDTLGSW-QKCVSVMKAALDSVLIM 277
K+ + + G +GK++ + Y VN CV M + +
Sbjct: 101 FGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMT 160
Score = 27.2 bits (60), Expect = 8.7
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 2/80 (2%)
Query: 247 LNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPL-NYTTVNRDT 305
L + S + K + + + G +GK++ + Y VN
Sbjct: 79 LELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTN 138
Query: 306 LGSW-QKCVSVMKAALDSGL 324
CV M + G
Sbjct: 139 ENFPFNDCVDKMVIWWEEGK 158
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 28.3 bits (64), Expect = 4.1
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 342 IEAAKQHGVRCIAVHMNISKEHAKH 366
A ++ V I + +S+ H
Sbjct: 88 RHAVAEYDVNVIGL--TLSENQYAH 110
>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics,
PSI-2, protein structure initiative, joint center
structural genomics; HET: MSE; 1.50A {Lactobacillus
plantarum} SCOP: c.108.1.6
Length = 209
Score = 27.9 bits (63), Expect = 4.2
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 30 FDLDGTLI 37
FD+DGTL
Sbjct: 9 FDIDGTLT 16
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 28.2 bits (64), Expect = 4.2
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 12/50 (24%)
Query: 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVI 75
KI FD+DGTL+ +L S IE +++ G + I
Sbjct: 4 KIVFFDIDGTLL-----------DEQKQLPLSTIE-AVRRLKQSGVYVAI 41
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 27.9 bits (63), Expect = 4.4
Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 207 YQKAQSQTIPNIPHD--KKQVLIMIGSQGSGKSSFVSTYL 244
+++ + + +I + Q+L + GS G+GK+S + +
Sbjct: 16 WEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM 55
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer,
oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2
d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Length = 460
Score = 28.3 bits (63), Expect = 4.8
Identities = 17/110 (15%), Positives = 40/110 (36%), Gaps = 14/110 (12%)
Query: 29 SFDLDGTLITTKSGKVFP--VDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKK 86
++D G L++ + + DW L + +E+ YK +IF N A
Sbjct: 124 AYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVET---------YKGLIFANWDADA--- 171
Query: 87 MSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGD 136
+ +A+ + + + + +P W++ +++ D
Sbjct: 172 PDLDTYLGEAKFYMDHMLDRTEAGTEAIPGIQKWVIPCNWKFAAEQFCSD 221
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 28.0 bits (63), Expect = 5.0
Identities = 5/25 (20%), Positives = 9/25 (36%), Gaps = 2/25 (8%)
Query: 342 IEAAKQHGVRCIAVHMNISKEHAKH 366
A ++ V I + +SK
Sbjct: 106 RRAVERFDVNVIGL--TLSKNQHAR 128
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.51A {Lactobacillus delbrueckii}
Length = 240
Score = 27.6 bits (62), Expect = 5.6
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 30 FDLDGTLITT 39
FD+DGT++ T
Sbjct: 9 FDMDGTILDT 18
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S,
aromatic hydroc catabolism, iron, iron-sulfur,
metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas
testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A*
2xr8_A* 2yfi_A 2yfj_A*
Length = 457
Score = 27.9 bits (62), Expect = 5.6
Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 3/108 (2%)
Query: 29 SFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMS 88
++D+ G L+ K D + F + Q + YK ++F N
Sbjct: 126 AYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEA---PD 182
Query: 89 TRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGD 136
+ + + A + + + + +P W++ +++ D
Sbjct: 183 LKTYLSDAMPYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSD 230
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural
genomics, haloacid dehalogenase-like F PSI, protein
structure initiative; 1.40A {Streptococcus pneumoniae}
SCOP: c.108.1.3
Length = 190
Score = 27.5 bits (62), Expect = 5.6
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 30 FDLDGTLI 37
+DL GTL+
Sbjct: 11 WDLGGTLL 18
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory
protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB:
1jhz_A
Length = 289
Score = 27.9 bits (63), Expect = 5.6
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 318 AALDSGLSVVVDNTNPDKESRHRYIEAAKQHGV 350
G ++++ N + E + Y+ Q V
Sbjct: 32 NCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRV 64
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 28.1 bits (62), Expect = 5.6
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 217 NIPHDKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVN----RDTLGSWQKCVSVMKAAL 271
NIP KK+ + G SGK++ + L+ +N D L +
Sbjct: 165 NIP--KKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVV 221
>3h5o_A Transcriptional regulator GNTR; transcription regulator,
GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding;
2.30A {Chromobacterium violaceum}
Length = 339
Score = 27.9 bits (63), Expect = 6.0
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 318 AALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAV 355
+G +++ N++ D + + A QH + +
Sbjct: 87 VLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLI 124
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA
protein, structural genomics, joint center for
structural G JCSG; HET: MSE CIT; 1.80A {Clostridium
difficile}
Length = 352
Score = 27.9 bits (63), Expect = 6.1
Identities = 5/42 (11%), Positives = 9/42 (21%), Gaps = 9/42 (21%)
Query: 103 LNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQS 144
L++ V L + +SQ
Sbjct: 60 LDIDVVKMYPFMITEDTFKFDN---------ENTLVVGVSQG 92
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 27.7 bits (61), Expect = 6.2
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 222 KKQVLIMIGSQGSGKSSFVS 241
+++ +G+ GSGK++
Sbjct: 13 ASMIVVFVGTAGSGKTTLTG 32
Score = 27.7 bits (61), Expect = 6.6
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 274 VLIMIGSQGSGKSSFVS 290
+++ +G+ GSGK++
Sbjct: 16 IVVFVGTAGSGKTTLTG 32
>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310,
phosphatase, PFAM PF03332, H superfamily, jaecken
disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB:
2q4r_A
Length = 246
Score = 27.6 bits (60), Expect = 6.3
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 26 KIASFDLDGTLITTKSGKVFPVDTHDW 52
+ FD+DGTL T + + D+
Sbjct: 7 ALCLFDVDGTL--TAPRQKITKEMDDF 31
>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex,
protein glycosyl carbohydrate-deficient glycoprotein
syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP:
c.108.1.10 PDB: 2fuc_A*
Length = 262
Score = 27.6 bits (60), Expect = 6.4
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 26 KIASFDLDGTLITTKSGKVFPVDTHDW 52
+ FD+DGTL T + + + +
Sbjct: 14 VLCLFDVDGTL--TPARQKIDPEVAAF 38
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 27.7 bits (62), Expect = 6.5
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 222 KKQVLIMIGSQGSGKSSFVSTYL 244
+ Q+L + GS G+GK+S + +
Sbjct: 63 RGQLLAVAGSTGAGKTSLLMMIM 85
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics,
hydrola haloacid dehalogenase-like, PSI; 1.74A
{Streptococcus pneumoniae} SCOP: c.108.1.6
Length = 210
Score = 27.5 bits (62), Expect = 6.5
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 30 FDLDGTLI 37
FDLDGTL+
Sbjct: 9 FDLDGTLV 16
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813,
glucosamine-6-phosphate deamina PSI, protein structure
initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Length = 342
Score = 27.5 bits (62), Expect = 6.6
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 12/48 (25%)
Query: 97 EKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQS 144
E+++K + + A + ++K + LA S++
Sbjct: 75 ERVLK---IRTKAIPAGEV-AFQKIPD--------LEERGLAFLFSRT 110
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET:
PLP; 1.90A {Homo sapiens}
Length = 471
Score = 27.7 bits (62), Expect = 6.8
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 13/51 (25%)
Query: 312 CVSV--MKAALDSGLSVVVDN-----TNPDKESRHRYIEAAKQHGVRCIAV 355
C S ++ G V NP K+ I+ A +GV+ +
Sbjct: 99 CASKTEIQLVQSLG----VPPERIIYANPCKQVSQ--IKYAANNGVQMMTF 143
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast
structural genom consortium, NESG, unknown function;
1.59A {Pyrococcus horikoshii} PDB: 1x42_A
Length = 234
Score = 27.3 bits (61), Expect = 6.9
Identities = 14/117 (11%), Positives = 30/117 (25%), Gaps = 10/117 (8%)
Query: 30 FDLDGTLITTKS--GKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKM 87
FD GTL + + + N +++L +Y + +
Sbjct: 7 FDSLGTLNSVEGAAKSHLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPYRPLRD 66
Query: 88 STRDFQAKAEKIIKSLNVPVQMFVATQYDRYR----KPVPGMWEYLSQEKNG-DLAI 139
+ K+ + R + P + E L K + +
Sbjct: 67 ILEEV---MRKLAEKYGFKYPENFWEISLRMSQRYGELYPEVVEVLKSLKGKYHVGM 120
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI,
protein structure initiative; 2.70A {Plasmodium vivax}
SCOP: c.108.1.10
Length = 301
Score = 27.6 bits (62), Expect = 7.0
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 17/58 (29%)
Query: 27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGR 84
+ D DGTL K KV NI+ +K+ ++ GY + I T GR
Sbjct: 30 LLI-DFDGTLFVDKDIKVPS----------ENID-AIKEAIEKGYMVSICT-----GR 70
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 27.2 bits (60), Expect = 7.1
Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 25/117 (21%)
Query: 267 MKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTV-NRDTLGS----------------- 308
MK + I+ G G GKS+ L+ + D +
Sbjct: 1 MKK----LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLA 56
Query: 309 --WQKCVSVMKAALDSGLSVVVD-NTNPDKESRHRYIEAAKQHGVRCIAVHMNISKE 362
W+ + L + VV+D PD+ AK V + + ++E
Sbjct: 57 LTWKNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNRE 113
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase;
HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB:
1k47_A* 3gon_A*
Length = 337
Score = 27.6 bits (61), Expect = 7.1
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 18/111 (16%)
Query: 227 IMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS--------------WQKCVSVMKAALD 272
+ G GS + Y + +R + + W +S +K L+
Sbjct: 142 LKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLE 201
Query: 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSG 323
++ ++ SS + +K ++ L S ++ V + AL+ G
Sbjct: 202 CDFLVGWTKEVAVSSHMVQQIKQNIN----QNFLTSSKETVVSLVEALEQG 248
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet
domain, structural genomics, israel structural
proteomics center, ISPC; 2.05A {Mus musculus}
Length = 448
Score = 27.7 bits (62), Expect = 7.3
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 13/51 (25%)
Query: 312 CVSV--MKAALDSGLSVVVDN-----TNPDKESRHRYIEAAKQHGVRCIAV 355
C S M + G V T+P K+ I+ A + GV +
Sbjct: 89 CSSKNEMALVQELG----VSPENIIFTSPCKQVSQ--IKYAAKVGVNIMTC 133
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 27.9 bits (62), Expect = 7.4
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 183 PEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVST 242
+ P P F R+ A Q + + + + + G G GKS +
Sbjct: 110 VRTVLCEGGVPQRP--VIFVTRKKLVHAIQQKL-WKLNGEPGWVTIYGMAGCGKSVLAAE 166
Query: 243 YLK 245
++
Sbjct: 167 AVR 169
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics,
isomerase, structural genomics consortium, SGC; 1.85A
{Trypanosoma brucei} PDB: 2i54_A* 2i55_A*
Length = 246
Score = 27.2 bits (59), Expect = 7.5
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 12/53 (22%)
Query: 26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN 78
+ FD+DGTL T + +K+ G+ +
Sbjct: 5 VLLLFDVDGTL--TPPRLCQTDEMRAL----------IKRARGAGFCVGTVGG 45
>3e3m_A Transcriptional regulator, LACI family; structural genomics,
DNA-binding, plasmid, transcription regulation, PSI-2;
1.60A {Silicibacter pomeroyi}
Length = 355
Score = 27.5 bits (62), Expect = 7.5
Identities = 5/38 (13%), Positives = 13/38 (34%)
Query: 318 AALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAV 355
GL +++ T E + +E + + +
Sbjct: 95 VLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVL 132
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 27.6 bits (61), Expect = 7.5
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 204 REVYQKAQSQTIPNIP---HDKKQVLIMIGSQGSGKSSFVSTYL 244
R +KA+ T+ +P + + L++ G+ G+GKS +
Sbjct: 31 RMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELA 74
>3egc_A Putative ribose operon repressor; structural genomics, unknown
function, DNA-binding, transcri transcription
regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Length = 291
Score = 27.5 bits (62), Expect = 7.7
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 318 AALDSGLSVVVDNTNPDKESRHRYIEAAKQHGV 350
A G SV++ NT D + + V
Sbjct: 33 EARHKGYSVLLANTAEDIVREREAVGQFFERRV 65
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.5 bits (60), Expect = 7.8
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 214 TIPNIPHDKKQ------VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVM 267
+PN + K L+++G G GKS+ +++ Y+ +K V V
Sbjct: 16 NLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVE 75
Query: 268 K 268
+
Sbjct: 76 Q 76
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 27.2 bits (61), Expect = 8.0
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 221 DKKQVLIMIGSQGSGKSSF 239
+ +V+++IG GSGKS+F
Sbjct: 48 REGEVVVVIGPSGSGKSTF 66
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 27.1 bits (61), Expect = 8.1
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 323 GLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKE 362
VVV N ++ + +E K+ G IAV +++ E
Sbjct: 31 KAKVVV-NYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVE 69
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 27.5 bits (61), Expect = 8.3
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 211 QSQTIPNIPHDKKQVLIMIGSQGSGKS 237
+ PN+ K+Q+ ++ GSGK+
Sbjct: 10 MGRGSPNMLR-KRQMTVLDLHPGSGKT 35
>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1; protein-peptide complex, HAD
superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens}
PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A
3l0b_A* 2q5e_A
Length = 181
Score = 26.9 bits (60), Expect = 8.6
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 18/64 (28%)
Query: 30 FDLDGTLI------TTKSGKVFPVDTHDWKLLFSNIESVLK--------QYLDDGYKLVI 75
+LD TL+ + + PV+ VLK Q + + ++ V+
Sbjct: 20 INLDETLVHSSFKPVNNADFIIPVEIDGVVHQV----YVLKRPHVDEFLQRMGELFECVL 75
Query: 76 FTNQ 79
FT
Sbjct: 76 FTAS 79
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 26.8 bits (60), Expect = 8.8
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 210 AQSQTIPNIPHDKKQVLIMIGSQGSGK 236
A + + P D+ V+ ++G G+GK
Sbjct: 2 AATTSQPAFSPDQVSVIFVLGGPGAGK 28
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 26.9 bits (59), Expect = 8.8
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 82 IGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPV 122
IG+ ++ ++ F+ +I+ NV V VAT R P+
Sbjct: 108 IGKMELFSKKFRDLVRQIMHDPNVNV---VATIPIRDVHPL 145
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH,
niaid, SBRI, UW, emerald biostructures, ehrlich
chaffeensis; 1.90A {Ehrlichia chaffeensis}
Length = 231
Score = 26.9 bits (60), Expect = 9.6
Identities = 5/8 (62%), Positives = 5/8 (62%)
Query: 30 FDLDGTLI 37
FD TLI
Sbjct: 30 FDWYNTLI 37
>3k4h_A Putative transcriptional regulator; structural genomics, protein
structure INI NEW YORK structural genomix research
consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh
391-98}
Length = 292
Score = 27.1 bits (61), Expect = 9.9
Identities = 3/33 (9%), Positives = 13/33 (39%)
Query: 318 AALDSGLSVVVDNTNPDKESRHRYIEAAKQHGV 350
A G ++ + ++E + ++ + +
Sbjct: 38 FAHVEGYALYMSTGETEEEIFNGVVKMVQGRQI 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.392
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,493,538
Number of extensions: 320096
Number of successful extensions: 1895
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1861
Number of HSP's successfully gapped: 183
Length of query: 369
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 274
Effective length of database: 4,049,298
Effective search space: 1109507652
Effective search space used: 1109507652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)