BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4599
(201 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23438|SSRB_CANFA Translocon-associated protein subunit beta OS=Canis familiaris
GN=SSR2 PE=1 SV=1
Length = 183
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 71/133 (53%), Gaps = 27/133 (20%)
Query: 84 YTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGAF 143
Y IYN+G+S A +V +SD SFPPE F I G DR+ P +NV+H V+++P G F
Sbjct: 44 YNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYF 103
Query: 144 NFSFAEVSYKASENA-----------EDG----------------DWAAFAFMTLPPLLI 176
NF+ A V+Y A E+ + G DWAAF MTLP + I
Sbjct: 104 NFTSATVTYLAQEDGPVVIGFTSAPGQGGILAQREFDRRFSPHFLDWAAFGVMTLPSIGI 163
Query: 177 PFLLWFQSKTKYE 189
P LLW+ SK KY+
Sbjct: 164 PLLLWYSSKRKYD 176
>sp|P43308|SSRB_HUMAN Translocon-associated protein subunit beta OS=Homo sapiens GN=SSR2
PE=1 SV=1
Length = 183
Score = 100 bits (250), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 94/198 (47%), Gaps = 53/198 (26%)
Query: 2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK 61
D+ ++Y IYN+G+S A +V +SD SFPPE F I G DR+ P +NV+H V+++P
Sbjct: 39 DLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPL 98
Query: 62 SYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVID 121
G FNF+ A ++Y A E+ VV+ +S P QGG
Sbjct: 99 KAGYFNFTSATITYLAQEDGP--------------VVIGSTSAPG-----QGG------- 132
Query: 122 RVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLLW 181
++ Q + F+ F DWAAF MTLP + IP LLW
Sbjct: 133 -----------ILAQREFDRRFSPHFL-------------DWAAFGVMTLPSIGIPLLLW 168
Query: 182 FQSKTKYEKLAGGKTKKS 199
+ SK KY+ KTKK+
Sbjct: 169 YSSKRKYDT---PKTKKN 183
>sp|Q9CPW5|SSRB_MOUSE Translocon-associated protein subunit beta OS=Mus musculus GN=Ssr2
PE=1 SV=1
Length = 183
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 89/188 (47%), Gaps = 50/188 (26%)
Query: 2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK 61
D+ ++Y IYN+G+S A +V +SD SFPPE F I G DR+ P +NV+H V+++P
Sbjct: 39 DLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPL 98
Query: 62 SYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVID 121
G FNF+ A ++Y A E+ VV+ +S P QGG
Sbjct: 99 KAGYFNFTSATITYLAQEDGP--------------VVIGSTSAPG-----QGG------- 132
Query: 122 RVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLLW 181
++ Q + F+ F DWAAF MTLP + IP LLW
Sbjct: 133 -----------ILAQREFDRRFSPHFL-------------DWAAFGVMTLPSIGIPLLLW 168
Query: 182 FQSKTKYE 189
+ SK KY+
Sbjct: 169 YSSKRKYD 176
>sp|Q5E9E4|SSRB_BOVIN Translocon-associated protein subunit beta OS=Bos taurus GN=SSR2
PE=2 SV=1
Length = 183
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 94/198 (47%), Gaps = 53/198 (26%)
Query: 2 DVVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPK 61
D+ ++Y IYN+G+S A +V +SD SFPPE F I G DR+ P +NV+H V+++P
Sbjct: 39 DLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPL 98
Query: 62 SYGAFNFSFAEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVID 121
G FNF+ A V+Y A E+ VV+ +S P QGG
Sbjct: 99 KAGYFNFTSATVTYLAQEDGP--------------VVIGFTSAPG-----QGG------- 132
Query: 122 RVPPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTLPPLLIPFLLW 181
++ Q + F+ F DWAAF MTLP + +P LLW
Sbjct: 133 -----------ILAQREFDRRFSPHFL-------------DWAAFGVMTLPSIGVPLLLW 168
Query: 182 FQSKTKYEKLAGGKTKKS 199
+ SK KY+ KTKK+
Sbjct: 169 YSSKRKYDT---PKTKKN 183
>sp|Q22169|SSRB_CAEEL Translocon-associated protein subunit beta OS=Caenorhabditis
elegans GN=trap-2 PE=1 SV=1
Length = 188
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 1 MDVVVKYTIYNIGNSVATNVVVSDS-SFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQ 59
MD V++Y +YN+G+ A V + D SFP +F+I G +++P +NVTH V+++
Sbjct: 42 MDFVLEYGLYNVGDKPAQKVTIDDRHSFPTNSFDIVKGLLFVHFEQIPAGSNVTHSVVIR 101
Query: 60 PKSYGAFNFSFAEVSYKASENAEDYTIYN 88
P+++G FN++ A+V+Y T+ N
Sbjct: 102 PRAFGFFNYTAAQVTYYTDNENHHVTLTN 130
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 30/154 (19%)
Query: 73 VSYKASENAE---DYTIYNIGNSVATNVVVSDS-SFPPEAFEIQGGQFKFVIDRVPPQTN 128
+S A EN + +Y +YN+G+ A V + D SFP +F+I G +++P +N
Sbjct: 34 LSTYAVENMDFVLEYGLYNVGDKPAQKVTIDDRHSFPTNSFDIVKGLLFVHFEQIPAGSN 93
Query: 129 VTHVVIVQPKSYGAFNFSFAEVSYKA-SENAE------------------DGDWA----- 164
VTH V+++P+++G FN++ A+V+Y +EN D +A
Sbjct: 94 VTHSVVIRPRAFGFFNYTAAQVTYYTDNENHHVTLTNTPGEGYIYRQREYDRRFAPKYTY 153
Query: 165 --AFAFMTLPPLLIPFLLWFQSKTKYEKLAGGKT 196
F + P L FLL+ QSK ++ + K+
Sbjct: 154 FLVFFLIVAPTTLGSFLLFQQSKARFPNVIKKKS 187
>sp|Q54VI6|SSRB_DICDI Translocon-associated protein subunit beta OS=Dictyostelium
discoideum GN=ssr2 PE=2 SV=2
Length = 184
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 43/82 (52%)
Query: 5 VKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYG 64
+++ IYN+G+ A ++ D+ F FE G + + + P + V + V PK G
Sbjct: 44 IQFIIYNVGSEPAYDISFIDNDFSNAEFEFVSGSSEGKWETLAPNSQVQTNLTVIPKKSG 103
Query: 65 AFNFSFAEVSYKASENAEDYTI 86
++ + ++Y+ ++ + ++T+
Sbjct: 104 IYSLTSTVLNYRKTQTSSEFTV 125
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 38/78 (48%)
Query: 83 DYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKSYGA 142
+ IYN+G+ A ++ D+ F FE G + + + P + V + V PK G
Sbjct: 45 QFIIYNVGSEPAYDISFIDNDFSNAEFEFVSGSSEGKWETLAPNSQVQTNLTVIPKKSGI 104
Query: 143 FNFSFAEVSYKASENAED 160
++ + ++Y+ ++ + +
Sbjct: 105 YSLTSTVLNYRKTQTSSE 122
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,476,947
Number of Sequences: 539616
Number of extensions: 2799942
Number of successful extensions: 5147
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5130
Number of HSP's gapped (non-prelim): 21
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)