RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4599
         (201 letters)



>2hr0_B Complement C3 alpha' chain; complement component C3B, immune
           system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B*
           2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B*
           2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C*
           3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
          Length = 915

 Score = 35.8 bits (81), Expect = 0.007
 Identities = 18/132 (13%), Positives = 42/132 (31%), Gaps = 1/132 (0%)

Query: 3   VVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKS 62
           V ++  +YN   +    V V     P         +       +PP+++++   ++ P  
Sbjct: 97  VEIRAVLYNYRQNQELKVRVELLHNPAFCSLATTKRRHQQTVTIPPKSSLSVPYVIVPLK 156

Query: 63  YGAFNFSF-AEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVID 121
            G       A V +    +    ++  +   +  N  V+  +  PE    +G Q + +  
Sbjct: 157 TGLQEVEVKAAVYHHFISDGVRKSLKVVPEGIRMNKTVAVRTLDPERLGREGVQKEDIPP 216

Query: 122 RVPPQTNVTHVV 133
                       
Sbjct: 217 ADLSDQVPDTES 228


>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A
           {Bos taurus}
          Length = 1661

 Score = 30.1 bits (66), Expect = 0.54
 Identities = 22/140 (15%), Positives = 40/140 (28%), Gaps = 1/140 (0%)

Query: 3   VVVKYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRVPPQTNVTHVVIVQPKS 62
           V ++  +YN   +    V V     P         +       +P +++V    ++ P  
Sbjct: 844 VEIRAILYNYREAENLKVRVELLYNPAFCSLATAKKRHQQTITIPARSSVAVPYVIVPLK 903

Query: 63  YGAFNFSF-AEVSYKASENAEDYTIYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVID 121
            G       A V      +    T+  +   V  N  V+  +  PE     G Q + V  
Sbjct: 904 IGLHEVEVKAAVYNHFISDGVKKTLKVVPEGVRVNKTVAVRTLNPEHLGQGGVQREEVPA 963

Query: 122 RVPPQTNVTHVVIVQPKSYG 141
                         +    G
Sbjct: 964 ADLSDQVPDTESETKILLQG 983


>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum}
          Length = 611

 Score = 26.6 bits (58), Expect = 7.3
 Identities = 19/108 (17%), Positives = 28/108 (25%), Gaps = 10/108 (9%)

Query: 74  SYKASENAEDYT----------IYNIGNSVATNVVVSDSSFPPEAFEIQGGQFKFVIDRV 123
            Y  +E A DY               G+S         S   P          + V   +
Sbjct: 491 DYIYNEVAIDYNAAFVGACAGLYRFFGDSSMQIDPSMPSHNVPVPPTPTPPDTQIVYGDL 550

Query: 124 PPQTNVTHVVIVQPKSYGAFNFSFAEVSYKASENAEDGDWAAFAFMTL 171
                VT       K Y   +      S +A++   DG   +     L
Sbjct: 551 NGDQKVTSTDYTMLKRYLMKSIDRFNTSEQAADLNRDGKINSTDLTIL 598


>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
           alzheimer'S disease, immunotherapies, APP, immune
           system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
           1h3p_L
          Length = 252

 Score = 25.8 bits (57), Expect = 9.5
 Identities = 5/15 (33%), Positives = 7/15 (46%)

Query: 169 MTLPPLLIPFLLWFQ 183
           M LP  L+  + W  
Sbjct: 15  MKLPVRLLVLMFWIP 29


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0801    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,047,992
Number of extensions: 175446
Number of successful extensions: 366
Number of sequences better than 10.0: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 10
Length of query: 201
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 112
Effective length of database: 4,216,824
Effective search space: 472284288
Effective search space used: 472284288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.8 bits)