BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy46
(660 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 23 EAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDI 80
+A++ L FQ+ PD K +L + ++ IA + L KLI+R + L RI I
Sbjct: 35 QAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 23 EAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDI 80
+A++ L FQ+ PD K +L + ++ IA + L KLI+R + L RI I
Sbjct: 35 QAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 23 EAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDI 80
+A++ L FQ+ PD K +L + ++ IA + L KLI+R + L RI I
Sbjct: 35 QAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 23 EAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDI 80
+A++ L FQ+ PD K +L + ++ IA + L KLI+R + L RI I
Sbjct: 35 QAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 23 EAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDI 80
+A++ L FQ+ PD K +L + ++ IA + L KLI+R + L RI I
Sbjct: 33 QAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 90
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 23 EAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDI 80
+A++ L FQ+ PD K +L + ++ IA + L KLI+R + L RI I
Sbjct: 35 QAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 23 EAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDI 80
+A++ L FQ+ PD K +L + ++ IA + L KLI+R + L RI I
Sbjct: 35 QAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 23 EAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDI 80
+A++ L FQ+ PD K +L + ++ IA + L KLI+R + L RI I
Sbjct: 35 QAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 23 EAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDI 80
+A++ L FQ+ PD K +L + ++ IA + L KLI+R + L RI I
Sbjct: 35 QAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 23 EAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDI 80
+A++ L FQ+ PD K +L + ++ IA + L KLI+R + L RI I
Sbjct: 35 QAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 23 EAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDI 80
+A++ L FQ+ PD K +L + ++ IA + L KLI+R + L RI I
Sbjct: 35 QAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 23 EAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDI 80
+A++ L FQ+ PD K +L + ++ IA + L KLI+R + L RI I
Sbjct: 35 QAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92
>pdb|2AM1|A Chain A, Sp Protein Ligand 1
pdb|2AM2|A Chain A, Sp Protein Ligand 2
Length = 454
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 453 LEQLSAIGRCEYQKTCSLLV---QLFDQSARLYQELISTPSPNQIDIAIQEGR-LTWLVY 508
LE SAI E K ++L +L DQS +L+ + I + SP+ +DI I G + L
Sbjct: 336 LETFSAIPANEGGKKIAVLADXKELGDQSVQLHNQXILSLSPDVLDIVIFYGEDIAQLAQ 395
Query: 509 IIGAA--VGGRVSFNSNEDHDAMDGELLVCRVLQLMNLTDPRLLGPGPGCEKLELAML 564
+ +G F ED D E LV +V + + D LL G LA L
Sbjct: 396 LASQXFPIGHVYYFKKTEDQDQF--EDLVKQVKESLGAHDQILL---KGSNSXNLAKL 448
>pdb|4AIB|A Chain A, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|B Chain B, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|C Chain C, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|D Chain D, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica
Length = 395
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 457 SAIGRC---EYQKTCSLLVQLFDQSARLYQELISTPSPNQID-IAIQE 500
+ G C E QK+C + Q +++ ++Y+ +I PS N D +A QE
Sbjct: 297 GSFGCCIWFEKQKSCECITQKVNENTKMYESIIYGPSCNGSDKVATQE 344
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 306 SNAERARFLTQL---VNGVKQILQNPQ-GLSDANNYHEFCRLLARLKSNYQLGELVMVDN 361
A+R R TQ+ + GV +L P GL +N RL+A LKS LG ++V
Sbjct: 508 GEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDN----DRLIATLKSXRDLGNTLIVVE 563
Query: 362 YSEAIQLIAKFTVE 375
+ E L A + ++
Sbjct: 564 HDEDTXLAADYLID 577
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 306 SNAERARFLTQL---VNGVKQILQNPQ-GLSDANNYHEFCRLLARLKSNYQLGELVMVDN 361
A+R R TQ+ + GV +L P GL +N RL+A LKS LG ++V
Sbjct: 508 GEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDN----DRLIATLKSMRDLGNTLIVVE 563
Query: 362 YSEAIQLIAKFTVE 375
+ E L A + ++
Sbjct: 564 HDEDTMLAADYLID 577
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 306 SNAERARFLTQL---VNGVKQILQNPQ-GLSDANNYHEFCRLLARLKSNYQLGELVMVDN 361
A+R R TQ+ + GV +L P GL +N RL+A LKS LG ++V
Sbjct: 206 GEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDN----DRLIATLKSMRDLGNTLIVVE 261
Query: 362 YSEAIQLIAKFTVE 375
+ E L A + ++
Sbjct: 262 HDEDTMLAADYLID 275
>pdb|2V0O|A Chain A, Fcho2 F-Bar Domain
pdb|2V0O|B Chain B, Fcho2 F-Bar Domain
pdb|2V0O|C Chain C, Fcho2 F-Bar Domain
Length = 276
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 145 NFLQGSVEHCIIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLF----DIFR 200
+ L +++H I + L+ E I EA +RS+TK K AS+Y + F D+F+
Sbjct: 21 DVLYHNMKHGQISTKELADFVRERATIEEA-YSRSMTKLAKSASNYSQLGTFAPVWDVFK 79
Query: 201 LSCSLLSN 208
S L+N
Sbjct: 80 TSTEKLAN 87
>pdb|1V4G|A Chain A, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
pdb|1V4G|B Chain B, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
pdb|1V4G|C Chain C, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
pdb|1V4G|D Chain D, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
Length = 518
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 440 EDPLDDLGMVSQQLEQLSAIGRCEYQKTCSLLVQLFDQ-----SARLYQELIST 488
+D DL V+Q L+ ++ G YQK C LV FD SAR+ + +I T
Sbjct: 407 KDLFRDLKRVAQTLDSIN--GGEAYQKVCDELVACFDNPDLTFSARILRSMIDT 458
>pdb|1VA6|A Chain A, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
From Escherichia Coli B Complexed With Transition-State
Analogue
pdb|1VA6|B Chain B, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
From Escherichia Coli B Complexed With Transition-State
Analogue
pdb|2D32|A Chain A, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D32|B Chain B, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D32|C Chain C, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D32|D Chain D, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D33|A Chain A, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
pdb|2D33|B Chain B, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
pdb|2D33|C Chain C, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
pdb|2D33|D Chain D, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
Length = 518
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 440 EDPLDDLGMVSQQLEQLSAIGRCEYQKTCSLLVQLFDQ-----SARLYQELIST 488
+D DL V+Q L+ ++ G YQK C LV FD SAR+ + +I T
Sbjct: 407 KDLFRDLKRVAQTLDSIN--GGEAYQKVCDELVACFDNPDLTFSARILRSMIDT 458
>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|B Chain B, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|B Chain B, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|B Chain B, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 918
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 24/184 (13%)
Query: 135 VFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQ 194
+ R VI ++ L VEH + + + G+ ++ + + L K RK +IQ
Sbjct: 451 LLRTVILEIPELL-SPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRK-----DEIQ 504
Query: 195 -LFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCLTFDFIGTATDESSDDL 253
+ D R+ + +N + GQ FM ++ A +C+ D++ + ++
Sbjct: 505 GVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRF 564
Query: 254 CTVQIPTSWR--------------PAFLDPNTLKLFFNLYHSLPSTLSHLA-LACLVQIA 298
+ I ++R +LD L+ F YHSL + HLA + C+ +A
Sbjct: 565 HSPFIVENYRHLNQLREQLVLDCSAEWLD--FLEKFSEHYHSLCKAVHHLATVDCIFSLA 622
Query: 299 SVRR 302
V +
Sbjct: 623 KVAK 626
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,457,355
Number of Sequences: 62578
Number of extensions: 660140
Number of successful extensions: 1327
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1304
Number of HSP's gapped (non-prelim): 32
length of query: 660
length of database: 14,973,337
effective HSP length: 105
effective length of query: 555
effective length of database: 8,402,647
effective search space: 4663469085
effective search space used: 4663469085
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)