Query psy46
Match_columns 660
No_of_seqs 206 out of 462
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 21:03:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy46.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/46hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gjx_A Exportin-1; transport, 100.0 3.3E-28 1.1E-32 291.1 37.6 415 1-478 26-485 (1073)
2 4hat_C Exportin-1; heat repeat 100.0 2E-27 6.9E-32 285.3 43.1 485 1-573 14-530 (1023)
3 2x19_B Importin-13; nuclear tr 100.0 3.2E-26 1.1E-30 275.6 33.1 473 1-577 22-522 (963)
4 3m1i_C Exportin-1; heat repeat 99.9 4.7E-23 1.6E-27 250.4 44.4 416 1-478 14-459 (1049)
5 3a6p_A Exportin-5; exportin-5, 99.9 7.9E-24 2.7E-28 259.6 36.9 417 2-480 10-471 (1204)
6 3ibv_A Exportin-T; karyopherin 99.9 2.4E-22 8.1E-27 241.1 48.2 489 2-574 5-526 (980)
7 2x1g_F Cadmus; transport prote 99.9 9.4E-21 3.2E-25 228.3 40.1 485 1-578 5-540 (971)
8 1wa5_C Importin alpha RE-expor 99.5 2.4E-10 8.3E-15 137.5 40.1 150 2-169 4-155 (960)
9 4fdd_A Transportin-1; heat rep 99.4 2.9E-10 1E-14 134.8 36.3 146 2-169 12-160 (852)
10 2bpt_A Importin beta-1 subunit 99.1 1.2E-08 4.2E-13 120.1 30.1 251 1-305 2-259 (861)
11 1ibr_B P95, importin beta-1 su 99.1 6E-09 2E-13 113.4 24.0 155 4-169 2-162 (462)
12 1qgr_A Protein (importin beta 98.4 5.3E-06 1.8E-10 97.7 19.6 249 4-325 2-268 (876)
13 1u6g_C TIP120 protein, CAND1; 94.7 3.5 0.00012 50.2 25.1 147 3-170 6-167 (1230)
14 4fdd_A Transportin-1; heat rep 64.7 2E+02 0.0068 32.9 31.2 178 262-476 621-799 (852)
15 3ul1_B Importin subunit alpha- 60.7 64 0.0022 34.8 12.6 98 5-123 59-172 (510)
16 1wa5_B Importin alpha subunit; 47.4 2.9E+02 0.0097 29.4 19.6 253 17-350 144-413 (530)
17 1u6g_C TIP120 protein, CAND1; 42.6 5E+02 0.017 30.9 21.1 106 44-170 11-119 (1230)
18 4hxt_A De novo protein OR329; 42.0 2.1E+02 0.0072 26.4 16.9 225 4-303 3-245 (252)
19 4hxt_A De novo protein OR329; 41.6 2.1E+02 0.0073 26.3 16.1 230 38-351 4-243 (252)
20 2jdq_A Importin alpha-1 subuni 40.9 3.1E+02 0.011 28.0 21.7 266 5-350 66-348 (450)
21 4db8_A Armadillo-repeat protei 37.7 2.5E+02 0.0087 26.0 14.8 139 5-165 14-166 (252)
22 4b8j_A Importin subunit alpha- 32.4 4.7E+02 0.016 27.6 24.4 262 5-349 76-358 (528)
23 3tpo_A Importin subunit alpha- 31.2 2.8E+02 0.0096 29.7 11.8 99 4-123 77-191 (529)
24 2jdq_A Importin alpha-1 subuni 26.1 5.2E+02 0.018 26.1 21.6 265 7-348 111-389 (450)
25 4b8j_A Importin subunit alpha- 23.0 6.7E+02 0.023 26.3 23.8 266 5-350 119-401 (528)
26 2vgl_B AP-2 complex subunit be 22.5 4.9E+02 0.017 28.3 11.8 57 105-166 132-189 (591)
27 1wa5_B Importin alpha subunit; 21.0 7.4E+02 0.025 26.0 22.1 266 6-347 176-455 (530)
28 4hat_C Exportin-1; heat repeat 20.2 1.1E+03 0.038 27.7 19.8 173 269-461 754-929 (1023)
No 1
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.97 E-value=3.3e-28 Score=291.10 Aligned_cols=415 Identities=18% Similarity=0.277 Sum_probs=298.2
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCcccccccccccc
Q psy46 1 EVRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDI 80 (660)
Q Consensus 1 ~l~~lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~s~~~~~~c~~iL~~S~~~~~~f~aa~~L~~~i~~~w~~~~~~~~~~~ 80 (660)
|++.||+++.++|+| ++++|++|+++|.+|+++|++|..|..||++|++++++|||+++|++.|.++|+
T Consensus 26 Dv~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~---------- 94 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWK---------- 94 (1073)
T ss_dssp SHHHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGG----------
T ss_pred CHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhh----------
Confidence 578999999999987 688999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcC---C---CChhHHHHHHHHHHHHHHhhccCCCCchhHHHhhHHHHHHHHhcCCchhH
Q psy46 81 PQGLSLQQRIDIRNYILNYLATR---P---KLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQGSVEHC 154 (660)
Q Consensus 81 ~~~l~~~~r~~lr~~ll~yl~~~---~---~~~~~V~~~l~~~la~i~K~~W~d~~~~~~~~~~~i~~v~~~l~~~~~~~ 154 (660)
.+++++|..||+++++++.+. + ..++.+++|+++++|.|+|++|++ .|+++++++.+.++.++.++
T Consensus 95 --~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~------~Wp~fi~dLv~~~~~~~~~~ 166 (1073)
T 3gjx_A 95 --ILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK------HWPTFISDIVGASRTSESLC 166 (1073)
T ss_dssp --GSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT------TCTTHHHHHHHHHHHCHHHH
T ss_pred --hCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh------hccHHHHHHHHHhCCCHHHH
Confidence 999999999999999999874 2 234777899999999999999987 38999999999987788899
Q ss_pred HHHHHHHHHHHHHhcccccccccccHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Q psy46 155 IIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQ 234 (660)
Q Consensus 155 ~igl~iL~~Lv~E~~~~~~s~~~~~~~~hrk~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~ 234 (660)
..++.+|..|++|+....+++ ++-.+.++.+-.++. ..+.|++++..+|++. ....++..+|+.+.
T Consensus 167 ~~~L~IL~~L~EEV~d~~~~~--l~~~r~~~lk~~L~~-~~~~Il~ll~~iL~~~-----------~~~~lv~~~L~~L~ 232 (1073)
T 3gjx_A 167 QNNMVILKLLSEEVFDFSSGQ--ITQVKAKHLKDSMCN-EFSQIFQLCQFVMENS-----------QNAPLVHATLETLL 232 (1073)
T ss_dssp HHHHHHHHHHHHHHTTSHHHH--BCHHHHHHHHHHHHH-TCHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccc--ccHHHHHHHHHHHHH-HHHHHHHHHHHHhccc-----------CCHHHHHHHHHHHH
Confidence 999999999999976542212 244455556666665 4777777776666531 12457788999999
Q ss_pred HhccccccCCCCCCCCCCcccccCCCcccccccCchhHHHHH-HHHhhCCchhHHHHHHHHHHHhccccCCCChHHH-HH
Q psy46 235 NCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFF-NLYHSLPSTLSHLALACLVQIASVRRSLFSNAER-AR 312 (660)
Q Consensus 235 ~~Ls~dF~~~~~de~~~~~~~v~~p~sW~~~l~~~~~l~llf-~ly~~~~~~l~~~al~cL~qlaslr~sif~~~er-~~ 312 (660)
.+++|...+ .+.+++++++++ .... .+.+...|++||..+++.+.+=+ .+. ..
T Consensus 233 ~~~sWI~i~---------------------~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~--~~~~~~ 287 (1073)
T 3gjx_A 233 RFLNWIPLG---------------------YIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQY--EEQFET 287 (1073)
T ss_dssp HHTTTSCTH---------------------HHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGG--HHHHHH
T ss_pred HHHHhcCHH---------------------HhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccch--HHHHHH
Confidence 999998644 356678888774 3332 56799999999999999852211 222 33
Q ss_pred HHHHHHHHHHHhhcCCC---------CCCCcchHHHHHHHHHHhhhhcchhhhhcccCHHHHHHHHHHHHHHHHhhcccC
Q psy46 313 FLTQLVNGVKQILQNPQ---------GLSDANNYHEFCRLLARLKSNYQLGELVMVDNYSEAIQLIAKFTVESLQMWQFA 383 (660)
Q Consensus 313 ~l~~l~~g~~~il~~~~---------~l~d~e~~~~~crll~rl~~n~~l~~L~~~~~~~~~i~~l~~fT~~~l~~~~~~ 383 (660)
.+..++..+..++.... .-+|+|..+++||++..+.++|. .-+.+.|.+...+....++.+.+-.-. .
T Consensus 288 lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~-~lIe~~p~~~~~l~~~l~~ll~~s~~~--d 364 (1073)
T 3gjx_A 288 LFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHG-QLLEKRLNLREALMEALHYMLLVSEVE--E 364 (1073)
T ss_dssp HHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH-HHHHHCGGGHHHHHHHHHHHHHHTTCS--C
T ss_pred HHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHH-HHHhcCccchHHHHHHHHHHHHHhCCC--c
Confidence 44455555555554321 23356788889999999999985 445555565555555555566554432 3
Q ss_pred cccHHHHHHHHHHHhcccccccc-----CCC-----------cchhhchHHHHH---HHHHcccchhhhhhc-cCCCCCC
Q psy46 384 PNSVHYLLSLWQRMVASVPYIKA-----MEP-----------HQLHTYTPEVTS---AYITSRLDSVAVVIR-DNLEDPL 443 (660)
Q Consensus 384 ~~s~~~LL~~W~~l~~~~~~~~~-----~~~-----------~~l~~~~~~I~~---~yi~srL~~~~~~~~-~~~ed~~ 443 (660)
.+.+.+++++|+.++..+- ... ..| .....|. .|+. ..+-+|++.|+.+.. |+++.+.
T Consensus 365 ~ei~kitf~fW~~L~~~L~-~e~~~~~~~~~~~~~~~~~~~~~~~~~y~-~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~ 442 (1073)
T 3gjx_A 365 TEIFKICLEYWNHLAAELY-RESPFSTSASPLLSGSQHFDIPPRRQLYL-TVLSKVRLLMVSRMAKPEEVLVVENDQGEV 442 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHCCSCCCCSSCTTSSCCSCSCHHHHTTH-HHHHHHHHHHHHTCCCSCCEEEEECSSSCE
T ss_pred HHHHHHHHHHHHHHHHHHH-hhccccccccccccccccccchhHHHHHH-HHHHHHHHHHHHhcCCCccccccCcccchH
Confidence 4578999999999987642 111 011 1111122 2332 234589998876543 3221111
Q ss_pred -----Cc---HHHHHHHHHHHHhhhhhcHhhHHHHHHHHHHHH
Q psy46 444 -----DD---LGMVSQQLEQLSAIGRCEYQKTCSLLVQLFDQS 478 (660)
Q Consensus 444 -----dd---~~~~~~qLe~i~~l~r~~~~~t~~~L~~l~~~~ 478 (660)
.| ...++..-+++..++...++.+.+.+.+.+.+.
T Consensus 443 ~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~ 485 (1073)
T 3gjx_A 443 VREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQ 485 (1073)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 12 234666667778888888999988888777654
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.97 E-value=2e-27 Score=285.34 Aligned_cols=485 Identities=16% Similarity=0.255 Sum_probs=333.6
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCcccccccccccc
Q psy46 1 EVRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDI 80 (660)
Q Consensus 1 ~l~~lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~s~~~~~~c~~iL~~S~~~~~~f~aa~~L~~~i~~~w~~~~~~~~~~~ 80 (660)
|+++||+++..+|+|+ +++|++|+++|.+|+++|++|..|..||+.+++++++|||+++|++.|.++|+
T Consensus 14 dv~~Le~av~~ly~p~-~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~---------- 82 (1023)
T 4hat_C 14 DIALLDQVVSTFYQGS-GVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWK---------- 82 (1023)
T ss_dssp CHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGG----------
T ss_pred CHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhh----------
Confidence 6889999999999886 45999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCC-C-----ChhHHHHHHHHHHHHHHhhccCCCCchhHHHhhHHHHHHHHhcCCchhH
Q psy46 81 PQGLSLQQRIDIRNYILNYLATRP-K-----LPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQGSVEHC 154 (660)
Q Consensus 81 ~~~l~~~~r~~lr~~ll~yl~~~~-~-----~~~~V~~~l~~~la~i~K~~W~d~~~~~~~~~~~i~~v~~~l~~~~~~~ 154 (660)
.+++++|..||+++++++.+.. + .+++|++|+++++|.|+|++|++ .|+++++++.+.++.++.++
T Consensus 83 --~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~------~Wp~~l~dL~~~l~~~~~~~ 154 (1023)
T 4hat_C 83 --LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ------NWPEFIPELIGSSSSSVNVC 154 (1023)
T ss_dssp --GSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT------TCTTHHHHHHHHTTTCHHHH
T ss_pred --cCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh------hchHHHHHHHHHhcCCHHHH
Confidence 9999999999999999998752 1 15899999999999999999987 48999999999998888899
Q ss_pred HHHHHHHHHHHHHhcccccccccccHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Q psy46 155 IIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQ 234 (660)
Q Consensus 155 ~igl~iL~~Lv~E~~~~~~s~~~~~~~~hrk~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~ 234 (660)
..++.+|..|.+|+...++ ..++-.+.++.+-.++. ..+.||+++.++|+.. ....+...+|+.+.
T Consensus 155 ~~~L~iL~~L~EEV~~~~~--~~l~~~r~~~lk~~l~~-~~~~I~~ll~~iL~~~-----------~~~~l~~~~L~~l~ 220 (1023)
T 4hat_C 155 ENNMIVLKLLSEEVFDFSA--EQMTQAKALHLKNSMSK-EFEQIFKLCFQVLEQG-----------ASSSLIVATLESLL 220 (1023)
T ss_dssp HHHHHHHHHHHHHHHTSCT--TTSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC-----------SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh--ccchHHHHHHHHHHHHH-HHHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHH
Confidence 9999999999999765311 12355666666666665 4777777777776541 12346688999999
Q ss_pred HhccccccCCCCCCCCCCcccccCCCcccccccCchhHHHHH-HHHhhCCchhHHHHHHHHHHHhccccCCCChH-HHHH
Q psy46 235 NCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFF-NLYHSLPSTLSHLALACLVQIASVRRSLFSNA-ERAR 312 (660)
Q Consensus 235 ~~Ls~dF~~~~~de~~~~~~~v~~p~sW~~~l~~~~~l~llf-~ly~~~~~~l~~~al~cL~qlaslr~sif~~~-er~~ 312 (660)
.+++|...+ .+.++++++++| .+.. .+.+...|++||+++++.+-+ .+. +-.+
T Consensus 221 s~l~WI~i~---------------------~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~--~~~~~~~~ 275 (1023)
T 4hat_C 221 RYLHWIPYR---------------------YIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIP--QDNDLIKR 275 (1023)
T ss_dssp HHTTTSCTH---------------------HHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCC--SSCHHHHH
T ss_pred HHHHhCCHH---------------------HhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccC--CchHHHHH
Confidence 999886544 355678999999 6654 678999999999999986521 111 1223
Q ss_pred HHHHHHHHHHH-----hhcCCC---------CCCCcchHHHHHHHHHHhhhhcchhhhhcccCHHHHHHHHHHHHHHHHh
Q psy46 313 FLTQLVNGVKQ-----ILQNPQ---------GLSDANNYHEFCRLLARLKSNYQLGELVMVDNYSEAIQLIAKFTVESLQ 378 (660)
Q Consensus 313 ~l~~l~~g~~~-----il~~~~---------~l~d~e~~~~~crll~rl~~n~~l~~L~~~~~~~~~i~~l~~fT~~~l~ 378 (660)
.+..++.++.. ++.... .-.|+|..+.+|+++.-+..+|.- -+.+.|.+.+.+....++...+.+
T Consensus 276 ~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~-li~~~~~~~~~l~~~l~~Ll~~~~ 354 (1023)
T 4hat_C 276 QTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRA-LLESDESLRELLLNAHQYLIQLSK 354 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGG-GGTSCGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHH-HHhCCcchhHHHHHHHHHHHHhhC
Confidence 44444444332 222111 123577787899999999888763 344445555555544444444432
Q ss_pred hcccCcccHHHHHHHHHHHhccccccccCCCcchhhchHHHHHHHHHcccchhhhhh-ccCCCCC--------CCcHHHH
Q psy46 379 MWQFAPNSVHYLLSLWQRMVASVPYIKAMEPHQLHTYTPEVTSAYITSRLDSVAVVI-RDNLEDP--------LDDLGMV 449 (660)
Q Consensus 379 ~~~~~~~s~~~LL~~W~~l~~~~~~~~~~~~~~l~~~~~~I~~~yi~srL~~~~~~~-~~~~ed~--------~dd~~~~ 449 (660)
-. ..+.+...++||+.+++++ |......+....+..++....+ .|+..|+.+. .++++++ -|+.+.+
T Consensus 355 ~~--d~ei~~~tl~FW~~L~~~l-~~e~~~~~~~~~~~~~L~~vli-~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f 430 (1023)
T 4hat_C 355 IE--ERELFKTTLDYWHNLVADL-FYEPLKKHIYEEICSQLRLVII-ENMVRPEEVLVVENDEGEIVREFVKESDTIQLY 430 (1023)
T ss_dssp SS--CHHHHHHHHHHHHHHHHHH-TTSTTTGGGGHHHHHHHHHHHH-HSCCCCTTCCEEECTTSCEEECSSCCGGGHHHH
T ss_pred CC--cHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHHHHH-HhcCCCcccccCCCCCccHHHHhccchHHHHHH
Confidence 21 2346789999999999864 3210011223333345555544 4777766442 1222221 1345677
Q ss_pred HHHHHHHHhhhhhcHhhHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhHHHHHHHHHHHHHHHHhcCcccccCCCccccC
Q psy46 450 SQQLEQLSAIGRCEYQKTCSLLVQLFDQSARLYQELISTPSPNQIDIAIQEGRLTWLVYIIGAAVGGRVSFNSNEDHDAM 529 (660)
Q Consensus 450 ~~qLe~i~~l~r~~~~~t~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~E~~l~WLv~i~g~~l~~~~~~~~~~~~~~~ 529 (660)
+..-+.+..++++...++++.+.+.+.+.+. . +.. -|+ .+--.++.+|++.+|-. + +..
T Consensus 431 ~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~-------~---~~~---~W~-~~EA~~~a~gaIa~~~~------~-~~e 489 (1023)
T 4hat_C 431 KSEREVLVYLTHLNVIDTEEIMISKLARQID-------G---SEW---SWH-NINTLSWAIGSISGTMS------E-DTE 489 (1023)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHS-------S---TTC---CHH-HHHHHHHHHHHTTTSSC------H-HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhc-------C---CCC---CHH-HHHHHHHHHHHHHcCCC------c-hhH
Confidence 7777999999999999988888887765432 1 111 243 45556777788665411 0 111
Q ss_pred ccchhHHHHHH-HHhhccccCCCCCCchHHHHHHHHHHHHHHHHH
Q psy46 530 DGELLVCRVLQ-LMNLTDPRLLGPGPGCEKLELAMLSFFEQFRKI 573 (660)
Q Consensus 530 d~~L~~~~v~~-l~~~~~~~l~~~~~~s~~l~~a~l~F~~~~~~~ 573 (660)
... +-.++. ++++.+... .....+++..+++|-++||..-
T Consensus 490 -~~~-l~~vi~~Ll~l~~~~~--~~d~k~~v~~t~~~~lGry~~w 530 (1023)
T 4hat_C 490 -KRF-VVTVIKDLLDLCVKKR--GKDNKAVVASDIMYVVGQYPRF 530 (1023)
T ss_dssp -HHH-HHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHTCHHH
T ss_pred -HHH-HHHHHHHHHHhhhccc--cCcchHHHHHHHHHHHHHHHHH
Confidence 112 333333 344432211 1123456777889999998774
No 3
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.95 E-value=3.2e-26 Score=275.61 Aligned_cols=473 Identities=14% Similarity=0.124 Sum_probs=304.4
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCcccccccccccc
Q psy46 1 EVRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDI 80 (660)
Q Consensus 1 ~l~~lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~s~~~~~~c~~iL~~S~~~~~~f~aa~~L~~~i~~~w~~~~~~~~~~~ 80 (660)
++++++++++.+|.++|+++|++|+++|.+|+++|++|..|..||+++.+++++|+|+.+|++.|.++|+
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~---------- 91 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWS---------- 91 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGG----------
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHH----------
Confidence 4788999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhccCCCCchhHHHhhHHHHHHHHhcC------CchhH
Q psy46 81 PQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQG------SVEHC 154 (660)
Q Consensus 81 ~~~l~~~~r~~lr~~ll~yl~~~~~~~~~V~~~l~~~la~i~K~~W~d~~~~~~~~~~~i~~v~~~l~~------~~~~~ 154 (660)
.+++++|..||+++++++.+.++.|++|+++++.+++.|+|++|++ .|+++++++.+.++. ++.++
T Consensus 92 --~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~------~Wp~~l~~l~~~~~~~~~~~~~~~~~ 163 (963)
T 2x19_B 92 --DIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPD------AWPCAVADMVRLFQAEDSPVDGQGRC 163 (963)
T ss_dssp --GSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTT------TSTTHHHHHHHHHCC------CHHHH
T ss_pred --hCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCcc------ccchHHHHHHHHHhhhccCCCcHHHH
Confidence 9999999999999999999876668999999999999999999976 389999999998865 55689
Q ss_pred HHHHHHHHHHHHHhcccccccccccHHHHHHH--HHhhhhhhhHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Q psy46 155 IIGVQILSQLTGEMNQISEADAARSLTKHRKI--ASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGL 232 (660)
Q Consensus 155 ~igl~iL~~Lv~E~~~~~~s~~~~~~~~hrk~--~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l 232 (660)
..++.+|..+.+|+... .. ...||. +-.++. .++.|+.+. .++.. .+. + ...+...++
T Consensus 164 ~~~l~iL~~l~ee~~~~---~~----~~~~r~~~~~~l~~-~~~~i~~ll----~~~l~--~~~---~-~~~~~~~~l-- 223 (963)
T 2x19_B 164 LALLELLTVLPEEFQTS---RL----PQYRKGLVRTSLAV-ECGAVFPLL----EQLLQ--QPS---S-PSCVRQKVL-- 223 (963)
T ss_dssp HHHHHHHHHHHHHHTTC---CC-------------CCSGG-GHHHHHHHH----HHHHS--CTT---C-CHHHHHHHH--
T ss_pred HHHHHHHHhCHHHHhcc---cC----cHHHHHHHHHHHHH-HHHHHHHHH----HHHHh--CCC---C-chHHHHHHH--
Confidence 99999999999998654 21 223332 222222 355555544 44443 111 1 112334444
Q ss_pred HHHhc-cccccCCCCCCCCCCcccccCCCcccccccCchhHHHHHHHHhhCCchhHHHHHHHHHHHhccccCCCChHHHH
Q psy46 233 AQNCL-TFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNAERA 311 (660)
Q Consensus 233 ~~~~L-s~dF~~~~~de~~~~~~~v~~p~sW~~~l~~~~~l~llf~ly~~~~~~l~~~al~cL~qlaslr~sif~~~er~ 311 (660)
+|+ +|...+.. ...++.+++.+|+.+. ++++...+++|+.++.+.+.+ +++.
T Consensus 224 --~~l~~wi~~~~~-------------------~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~----~~~~ 276 (963)
T 2x19_B 224 --KCFSSWVQLEVP-------------------LQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDA----QRYV 276 (963)
T ss_dssp --HHHHHHHTSSCC-------------------GGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTG----GGCH
T ss_pred --HHHHHHHcCCCC-------------------cccchHHHHHHHHHhC--CchHHHHHHHHHHHHHccccc----ccCH
Confidence 444 37654321 1124678888887764 578999999999999986432 1234
Q ss_pred HHHHHHHHHHHHhhcC---CCCCCCcchHHHHHHHHHHhhhhcchhhhhc----ccCHHHHHHHHHHHHHHHHhhc---c
Q psy46 312 RFLTQLVNGVKQILQN---PQGLSDANNYHEFCRLLARLKSNYQLGELVM----VDNYSEAIQLIAKFTVESLQMW---Q 381 (660)
Q Consensus 312 ~~l~~l~~g~~~il~~---~~~l~d~e~~~~~crll~rl~~n~~l~~L~~----~~~~~~~i~~l~~fT~~~l~~~---~ 381 (660)
.++..++.++...+.. ...-.|.+.++.+|+++.++.++|+ ..+.. .+.+..+++.+.+ +.+.. .
T Consensus 277 ~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~-~~l~~~~~~~~~~~~~l~~ll~----~~~~~~~~~ 351 (963)
T 2x19_B 277 NTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHS-RALLDQVEHWQSFLALVNMIMF----CTGIPGHYP 351 (963)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HHHHHCGGGHHHHHHHHHHHHH----HHTCSSCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhH-HHHHcCccchHHHHHHHHHHHH----HHcCCCCCC
Confidence 4555565555443210 0112466888899999999998875 33332 1234555555543 33322 2
Q ss_pred cCcccHHHHHHHHHHHhccccccccC-CC---cchhhchHHHHHHHHHcccchhhhhhccCCCCCCCcHHH----HHHHH
Q psy46 382 FAPNSVHYLLSLWQRMVASVPYIKAM-EP---HQLHTYTPEVTSAYITSRLDSVAVVIRDNLEDPLDDLGM----VSQQL 453 (660)
Q Consensus 382 ~~~~s~~~LL~~W~~l~~~~~~~~~~-~~---~~l~~~~~~I~~~yi~srL~~~~~~~~~~~ed~~dd~~~----~~~qL 453 (660)
...+.....+++|..++......... .+ ..+..+..+|....+. ++..++...-+ +.+.||.+. .++..
T Consensus 352 ~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~-~~~~p~~~~~~--~~~~de~~~~~~~r~~~~ 428 (963)
T 2x19_B 352 VNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLH-KAQFPSDEEYG--FWSSDEKEQFRIYRVDIS 428 (963)
T ss_dssp TTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHH-HHSCCCHHHHH--TSCHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHcCCCccccc--CCChhHHHHHHHHHHHHH
Confidence 23345778899999998744221100 01 1223334444444333 33222211000 011122222 23444
Q ss_pred HHHHhhhhhcHhhHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhHHHHHHHHHHHHHHHHhcCcccccCCCccccCccch
Q psy46 454 EQLSAIGRCEYQKTCSLLVQLFDQSARLYQELISTPSPNQIDIAIQEGRLTWLVYIIGAAVGGRVSFNSNEDHDAMDGEL 533 (660)
Q Consensus 454 e~i~~l~r~~~~~t~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~E~~l~WLv~i~g~~l~~~~~~~~~~~~~~~d~~L 533 (660)
+.+-.+++..+..+++.+.+.+.+.++.| .++ ......| =.++.+|++..+-.. +. + ..
T Consensus 429 ~~L~~~~~~~~~~~l~~~~~~l~~~l~~~-------~~~-~~w~~~e----aal~al~~i~~~~~~----~~----~-~~ 487 (963)
T 2x19_B 429 DTLMYVYEMLGAELLSNLYDKLGRLLTSS-------EEP-YSWQHTE----ALLYGFQSIAETIDV----NY----S-DV 487 (963)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHTC-------CCS-CCHHHHH----HHHHHHHHHTTSCCS----SC----C-SH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHhc-------CCC-CchHHHH----HHHHHHHHHHhhcCc----hh----h-HH
Confidence 56666777777888888888887766544 111 1222333 356777775544111 11 1 22
Q ss_pred hHHHHHHHH-hhccccCCCCCCchHHHHHHHHHHHHHHHHHHhcc
Q psy46 534 LVCRVLQLM-NLTDPRLLGPGPGCEKLELAMLSFFEQFRKIYVGD 577 (660)
Q Consensus 534 ~~~~v~~l~-~~~~~~l~~~~~~s~~l~~a~l~F~~~~~~~Yl~~ 577 (660)
+..++..+ ++.+ ..|++..+.+|++.+|++ ++.+
T Consensus 488 -l~~l~~~l~~l~~--------~~~~vr~~~~~~l~~~~~-~l~~ 522 (963)
T 2x19_B 488 -VPGLIGLIPRISI--------SNVQLADTVMFTIGALSE-WLAD 522 (963)
T ss_dssp -HHHHHHHGGGSCC--------CSHHHHHHHHHHHHHTHH-HHHH
T ss_pred -HHHHHHHHHhCCC--------CcHHHHHHHHHHHHHHHH-HHHh
Confidence 44555533 2221 368899999999999996 4443
No 4
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.93 E-value=4.7e-23 Score=250.42 Aligned_cols=416 Identities=17% Similarity=0.262 Sum_probs=286.7
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCcccccccccccc
Q psy46 1 EVRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDI 80 (660)
Q Consensus 1 ~l~~lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~s~~~~~~c~~iL~~S~~~~~~f~aa~~L~~~i~~~w~~~~~~~~~~~ 80 (660)
++++++++++.+|+|. +++|++||++|.+|+++|++|..|..||+++++++++|+|+.+|++.|.++|.
T Consensus 14 ~~~~l~~~l~~~~~p~-~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~---------- 82 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQGS-GVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWK---------- 82 (1049)
T ss_dssp CHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGG----------
T ss_pred cHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCc----------
Confidence 4789999999999774 77899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCC-CC-----hhHHHHHHHHHHHHHHhhccCCCCchhHHHhhHHHHHHHHhcCCchhH
Q psy46 81 PQGLSLQQRIDIRNYILNYLATRP-KL-----PNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQGSVEHC 154 (660)
Q Consensus 81 ~~~l~~~~r~~lr~~ll~yl~~~~-~~-----~~~V~~~l~~~la~i~K~~W~d~~~~~~~~~~~i~~v~~~l~~~~~~~ 154 (660)
.+++++|..||+++++++.+.+ +. +++|+++++.++|.|+|++|++ .|+++++++.+.++.+..++
T Consensus 83 --~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~------~Wp~ll~~L~~~~~~~~~~~ 154 (1049)
T 3m1i_C 83 --LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ------NWPEFIPELIGSSSSSVNVC 154 (1049)
T ss_dssp --GSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT------TCTTHHHHHHHHHTTCHHHH
T ss_pred --cCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc------cchHHHHHHHHHHccChHHH
Confidence 9999999999999999998863 22 3799999999999999999985 38999999999887666778
Q ss_pred HHHHHHHHHHHHHhcccccccccccHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Q psy46 155 IIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQ 234 (660)
Q Consensus 155 ~igl~iL~~Lv~E~~~~~~s~~~~~~~~hrk~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~ 234 (660)
..++.+|..+.+|+...++++.+.....|.| ..|++ .+..||..+.+.++.. +...+...+|+.+.
T Consensus 155 ~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk--~~l~~-~~~~i~~~~~~~l~~~-----------~~~~~~~~aL~~l~ 220 (1049)
T 3m1i_C 155 ENNMIVLKLLSEEVFDFSAEQMTQAKALHLK--NSMSK-EFEQIFKLCFQVLEQG-----------SSSSLIVATLESLL 220 (1049)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTSCHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhHHHHHHH--HHHHH-HHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHH
Confidence 8999999999998875322233333333433 45565 5888888888877642 12346778888888
Q ss_pred HhccccccCCCCCCCCCCcccccCCCcccccccCchhHHHHHHHHhhCCchhHHHHHHHHHHHhccccCCCChHHH-HHH
Q psy46 235 NCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNAER-ARF 313 (660)
Q Consensus 235 ~~Ls~dF~~~~~de~~~~~~~v~~p~sW~~~l~~~~~l~llf~ly~~~~~~l~~~al~cL~qlaslr~sif~~~er-~~~ 313 (660)
.+++|...+ .+.++++++.+|+.+.. ++++...|++||+++++.+-+ +..++ ...
T Consensus 221 ~~l~wi~~~---------------------~~~~~~ll~~l~~~~l~-~~~~~~~a~~~L~~i~~~~~~--~~~~~~~~~ 276 (1049)
T 3m1i_C 221 RYLHWIPYR---------------------YIYETNILELLSTKFMT-SPDTRAITLKCLTEVSNLKIP--QDNDLIKRQ 276 (1049)
T ss_dssp HHTTTSCTH---------------------HHHSSSHHHHHHTHHHH-SHHHHHHHHHHHHHHHHCCCC--TTCHHHHHH
T ss_pred HHHhhCCHH---------------------HHhhhhHHHHHHHHhCC-CHhHHHHHHHHHHHHHhCCCC--cchhhHHHH
Confidence 888776533 23446789999976654 678999999999999997522 11111 123
Q ss_pred HHHHHHHHHH-----hhcCCC---------CCCCcchHHHHHHHHHHhhhhcchhhhhcccCHHHHHHHHHHHHHHHHhh
Q psy46 314 LTQLVNGVKQ-----ILQNPQ---------GLSDANNYHEFCRLLARLKSNYQLGELVMVDNYSEAIQLIAKFTVESLQM 379 (660)
Q Consensus 314 l~~l~~g~~~-----il~~~~---------~l~d~e~~~~~crll~rl~~n~~l~~L~~~~~~~~~i~~l~~fT~~~l~~ 379 (660)
+..++.++.. ++.... .-.|.+.+..+|+++..+...| ...+...+.+..++..+..+++.+.+.
T Consensus 277 ~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~ll~~~~~ 355 (1049)
T 3m1i_C 277 TVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARN-RALLESDESLRELLLNAHQYLIQLSKI 355 (1049)
T ss_dssp HHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHH-HHHHHSCGGGHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHH-HHHHcCChhhHHHHHHHHHHHHHHHcC
Confidence 3333344433 221110 1234556678999998887775 233333222456666666777666553
Q ss_pred cccCcccHHHHHHHHHHHhccccccccCCCcchhhchHHHHHHHHHcccchhhhhh-ccCCCC-----CCCcHH---HHH
Q psy46 380 WQFAPNSVHYLLSLWQRMVASVPYIKAMEPHQLHTYTPEVTSAYITSRLDSVAVVI-RDNLED-----PLDDLG---MVS 450 (660)
Q Consensus 380 ~~~~~~s~~~LL~~W~~l~~~~~~~~~~~~~~l~~~~~~I~~~yi~srL~~~~~~~-~~~~ed-----~~dd~~---~~~ 450 (660)
. ..+.....++||..+...+ +...........+.+++....+. ++..++... .+++|. ..+|.+ .++
T Consensus 356 ~--d~~v~~~~lefw~~l~~~l-~~~~~~~~~~~~~l~~Lv~~ll~-~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~ 431 (1049)
T 3m1i_C 356 E--ERELFKTTLDYWHNLVADL-FYEPLKKHIYEEICSQLRLVIIE-NMVRPEEVLVVENDEGEIVREFVKESDTIQLYK 431 (1049)
T ss_dssp S--CHHHHHHHHHHHHHHHHHH-HHSTTCGGGGHHHHHHHHHHHHH-TCCCCTTCCEEECTTSCEEECSSCCHHHHHHHH
T ss_pred C--cHHHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHH-hcCCCcceeeeeCCCCcchHhhhccchHHHHHH
Confidence 2 2234677899999998743 10011123445566667655443 555443221 111110 112222 233
Q ss_pred HHHHHHHhhhhhcHhhHHHHHHHHHHHH
Q psy46 451 QQLEQLSAIGRCEYQKTCSLLVQLFDQS 478 (660)
Q Consensus 451 ~qLe~i~~l~r~~~~~t~~~L~~l~~~~ 478 (660)
..-+.+-.+++..+..+++.+.+.+.+.
T Consensus 432 ~~~~~L~~l~~~~~~~~l~~v~~~l~~~ 459 (1049)
T 3m1i_C 432 SEREVLVYLTHLNVIDTEEIMISKLARQ 459 (1049)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 3444555566777888888777766644
No 5
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.93 E-value=7.9e-24 Score=259.59 Aligned_cols=417 Identities=14% Similarity=0.171 Sum_probs=288.5
Q ss_pred hhHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCcccHHHHHHHHh-cCCChhHHHHHHHHHHHHhcCCccccccccccc
Q psy46 2 VRQLECLCKQLYES-ADGNLRVEAEKALVNFQNAPDTLAKCQLLLD-RGDSSYAQAIAANTLTKLISRPAQGLSLQQRID 79 (660)
Q Consensus 2 l~~lE~~~~~ly~~-~d~~~r~~Ae~~L~~f~~s~~~~~~c~~iL~-~S~~~~~~f~aa~~L~~~i~~~w~~~~~~~~~~ 79 (660)
+++++++++.+|++ +|++.|++|+++|.+|+++|+.|..|..+|. .+.+++++|+|+.+|++.|.++|.
T Consensus 10 ~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~--------- 80 (1204)
T 3a6p_A 10 CEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN--------- 80 (1204)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG---------
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc---------
Confidence 46789999999987 4788999999999999999999999999997 777899999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCC----CChhHHHHHHHHHHHHHHhhccCCCCchhHHHhhHHHHHHHHhcCCchhHH
Q psy46 80 IPQGLSLQQRIDIRNYILNYLATRP----KLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQGSVEHCI 155 (660)
Q Consensus 80 ~~~~l~~~~r~~lr~~ll~yl~~~~----~~~~~V~~~l~~~la~i~K~~W~d~~~~~~~~~~~i~~v~~~l~~~~~~~~ 155 (660)
.++.++|..||+++++++.+.. ..+++|++++++++|.|+|++|++ .|+++++++.+++++++.++.
T Consensus 81 ---~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~------~Wp~ll~~L~~~~~~~~~~~e 151 (1204)
T 3a6p_A 81 ---GMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ------HWPDMLIELDTLSKQGETQTE 151 (1204)
T ss_dssp ---GSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT------TCTTHHHHHHHHHHTCHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc------cchHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999998762 257999999999999999999986 389999999999887788899
Q ss_pred HHHHHHHHHHHHhcccccccccccHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcc---c--CCCC--chhHHHHHH
Q psy46 156 IGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCK---T--MTLE--GEGQIFMTQ 228 (660)
Q Consensus 156 igl~iL~~Lv~E~~~~~~s~~~~~~~~hrk~~~sF~~~~L~~if~~~~~~L~~~~~~~~---~--~~~~--~~~~~l~~~ 228 (660)
.++.+|..+++|+... .. +...+.++++..+++. ++.||..+.++|++.....+ + .+.+ .+...++.+
T Consensus 152 ~~L~iL~~L~Eev~~~---~~-~~~~r~~~l~~~l~~~-~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 226 (1204)
T 3a6p_A 152 LVMFILLRLAEDVVTF---QT-LPPQRRRDIQQTLTQN-MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVA 226 (1204)
T ss_dssp HHHHHHHHHHHHHHTS---CC-SCHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccc---cc-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHH
Confidence 9999999999997654 11 2235556666777765 99999999999876432110 0 0011 122347888
Q ss_pred HHHHHHHhccccccCCCCCCCCCCcccccCCCcccccccC--chhHHHHHHHHhhCCchhHHHHHHHHHHHhccccCCCC
Q psy46 229 LLGLAQNCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLD--PNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFS 306 (660)
Q Consensus 229 ~L~l~~~~Ls~dF~~~~~de~~~~~~~v~~p~sW~~~l~~--~~~l~llf~ly~~~~~~l~~~al~cL~qlaslr~sif~ 306 (660)
+|+.+.++++|...+. +.+ +.+++++|.++. ++++...|++||+++++.+++
T Consensus 227 aL~~l~~~l~Wi~~~~---------------------i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~--- 280 (1204)
T 3a6p_A 227 ALNTLAGYIDWVSMSH---------------------ITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGK--- 280 (1204)
T ss_dssp HHHHHHTTTTTSCHHH---------------------HHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSC---
T ss_pred HHHHHHHHHhccCHHH---------------------HHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCC---
Confidence 9999888887765331 222 358898887665 678999999999999998764
Q ss_pred hHHHHHHHHHH----HHHHHHhhc--CCCCCCCcchHHHHHHHHHHhhhhcchhhhh----------cccCHHHHHHHHH
Q psy46 307 NAERARFLTQL----VNGVKQILQ--NPQGLSDANNYHEFCRLLARLKSNYQLGELV----------MVDNYSEAIQLIA 370 (660)
Q Consensus 307 ~~er~~~l~~l----~~g~~~il~--~~~~l~d~e~~~~~crll~rl~~n~~l~~L~----------~~~~~~~~i~~l~ 370 (660)
.+++..++..+ +.++..... .+.++ .|...++++-++|+...+.- .+. ..+.+..|++.+.
T Consensus 281 ~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~--~e~d~e~~k~l~~ll~~lg~-~l~~l~~~~~~~~~~~~l~~~l~~lL 357 (1204)
T 3a6p_A 281 LEDRKPLMVLFGDVAMHYILSAAQTADGGGL--VEKHYVFLKRLCQVLCALGN-QLCALLGADSDVETPSNFGKYLESFL 357 (1204)
T ss_dssp HHHHGGGGGGGSHHHHHHHHHHHHTCCCCSC--CHHHHHHHHHHHHHHHHHHH-HHHHHHHTCSSCCCCTTHHHHHHHHH
T ss_pred hhhHHHHHHHHhhHHHHHHHHHhhcCCCCCC--ccHHHHHHHHHHHHHHHHHH-HHHHHHhccccccChhHHHHHHHHHH
Confidence 34444444332 223333321 12223 23333666666666655542 232 1234789998888
Q ss_pred HHHHHHHhhcccCccc-HHHHHHHHHHHhccccccccCCCcchhhchHHHHHHHHH--cccchhhhhh-------ccCCC
Q psy46 371 KFTVESLQMWQFAPNS-VHYLLSLWQRMVASVPYIKAMEPHQLHTYTPEVTSAYIT--SRLDSVAVVI-------RDNLE 440 (660)
Q Consensus 371 ~fT~~~l~~~~~~~~s-~~~LL~~W~~l~~~~~~~~~~~~~~l~~~~~~I~~~yi~--srL~~~~~~~-------~~~~e 440 (660)
++|.. ..+. ....++||.+++..... ..+..+..+.+++...... .|+..++... .+|+|
T Consensus 358 ~~t~~-------~~~~vs~~~l~fW~~ll~~~~~---~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d 427 (1204)
T 3a6p_A 358 AFTTH-------PSQFLRSSTQMTWGALFRHEIL---SRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFD 427 (1204)
T ss_dssp HHHTS-------SCHHHHHHHHHHHHHHHSCTTT---TTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCS
T ss_pred HHHhC-------ccHHhHHHHHHHHHHHHhcccc---cccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccC
Confidence 87743 2333 44459999999876421 1122344555666555511 3454433110 01111
Q ss_pred CCCCcHHH----HHHHHHHHHhhhhhcHhhHHHHHHHHHHHHHH
Q psy46 441 DPLDDLGM----VSQQLEQLSAIGRCEYQKTCSLLVQLFDQSAR 480 (660)
Q Consensus 441 d~~dd~~~----~~~qLe~i~~l~r~~~~~t~~~L~~l~~~~~~ 480 (660)
++.|+++. .++..+.+-.+|+..+..+++++.+.+.+.+.
T Consensus 428 ~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~ 471 (1204)
T 3a6p_A 428 SDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLS 471 (1204)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 11111111 34455567778899999999888777765544
No 6
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.93 E-value=2.4e-22 Score=241.05 Aligned_cols=489 Identities=10% Similarity=0.127 Sum_probs=320.1
Q ss_pred hhHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCcccHHHHHHHHhcCC--ChhHHHHHHHHHHHHhcCCcccccccccc
Q psy46 2 VRQLECLCKQLYESA-DGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGD--SSYAQAIAANTLTKLISRPAQGLSLQQRI 78 (660)
Q Consensus 2 l~~lE~~~~~ly~~~-d~~~r~~Ae~~L~~f~~s~~~~~~c~~iL~~S~--~~~~~f~aa~~L~~~i~~~w~~~~~~~~~ 78 (660)
+++++++.+..|.|. |++.|++|+++|.+|+++|++|..|..||.+++ +++++|||+++|++.|. .
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~---~-------- 73 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR---E-------- 73 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH---H--------
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH---h--------
Confidence 678999997666554 899999999999999999999999999998875 78999999999999998 4
Q ss_pred ccCCCCCHH----HHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHHHHhhccCCCCchhHHHhhHHHHHHHHhcC-Cc
Q psy46 79 DIPQGLSLQ----QRIDIRNYILNYLATRP--KLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQG-SV 151 (660)
Q Consensus 79 ~~~~~l~~~----~r~~lr~~ll~yl~~~~--~~~~~V~~~l~~~la~i~K~~W~d~~~~~~~~~~~i~~v~~~l~~-~~ 151 (660)
++++ ++..||+++++++.+.. +.|++|++|++++++.|+|+.|++ .|+++++++.+.++. +.
T Consensus 74 -----l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~------~Wp~~i~~l~~~~~~~~~ 142 (980)
T 3ibv_A 74 -----WNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS------NWNDFFASLQGVIAASSQ 142 (980)
T ss_dssp -----CCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT------TCTTHHHHHHHHHHHHCC
T ss_pred -----CChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc------cCchHHHHHHHHhcCCCh
Confidence 8888 99999999999999852 568999999999999999999977 489999999998764 34
Q ss_pred -hhHHHHHHHHHHHHHHhcccccccccccHHHHH---HHHHhhhhhhhHHHHHHHHHHHHHHHhhcccCCCCchhHHHHH
Q psy46 152 -EHCIIGVQILSQLTGEMNQISEADAARSLTKHR---KIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMT 227 (660)
Q Consensus 152 -~~~~igl~iL~~Lv~E~~~~~~s~~~~~~~~hr---k~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~ 227 (660)
......+++|..+.+|+... ...++.+.+. +.+-.+++.++..|++.+..+|.+... .....+..
T Consensus 143 ~~~~~~~LriL~~i~EEv~~~---~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~--------~~~~~l~~ 211 (980)
T 3ibv_A 143 SEFSNFYLKVLLSIGDEIADS---LVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSN--------AKNYGTVG 211 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC---CSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--------TTCHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHhc---ccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhc--------cCCHHHHH
Confidence 34566788888888998764 3333333222 335566777899999999999988654 12244678
Q ss_pred HHHHHHHHhccccccCCCCCCCCCCcccccCCCcccccccCchhHHHHHHHHhhCCchhHHHHHHHHHHHhccccCCCCh
Q psy46 228 QLLGLAQNCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSN 307 (660)
Q Consensus 228 ~~L~l~~~~Ls~dF~~~~~de~~~~~~~v~~p~sW~~~l~~~~~l~llf~ly~~~~~~l~~~al~cL~qlaslr~sif~~ 307 (660)
.+|+.+..+++|...+ .+.++++++.+|.... ++++...|.+||..+.+.+.. .
T Consensus 212 ~~L~~l~s~i~wi~~~---------------------~i~~~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~---~ 265 (980)
T 3ibv_A 212 LCLQVYAQWVSWININ---------------------LIVNEPCMNLLYSFLQ--IEELRCAACETMTEIVNKKMK---P 265 (980)
T ss_dssp HHHHHHHHHTTTSCHH---------------------HHHCHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCC---H
T ss_pred HHHHHHHHHHhhcCHH---------------------hhhcchHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCC---h
Confidence 8999999988876543 3666889999997776 578999999999999997643 4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC-CCCcchHHHHHHHHHHhhhhcchhhhhcccC---------HHHHHHHHHHHHHHHH
Q psy46 308 AERARFLTQLVNGVKQILQNPQG-LSDANNYHEFCRLLARLKSNYQLGELVMVDN---------YSEAIQLIAKFTVESL 377 (660)
Q Consensus 308 ~er~~~l~~l~~g~~~il~~~~~-l~d~e~~~~~crll~rl~~n~~l~~L~~~~~---------~~~~i~~l~~fT~~~l 377 (660)
+++.+.+..+ ++.+++..... -.|.|....+||++.-+...+-.. ...+. -..-+..+..+...+.
T Consensus 266 ~~k~~li~~l--~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~--~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~ 341 (980)
T 3ibv_A 266 LEKLNLLNIL--NLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI--KSDPSELSPELKENCSFQLYNLFPYLIRYL 341 (980)
T ss_dssp HHHHHHHHHH--HHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH--HTSCC--CHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhHHHHHHHH--hHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH--ccCccccchhhhhhHHHHHHHHHHHHHHHh
Confidence 4566666664 45666765332 467788778999998776653222 22221 0122333334445555
Q ss_pred hhcccCcccHHHHHHHHHHHhccccccccC--CCcchhhchHHHHHHHHHcccchhhhhhccCCCCCCCcHHHHHHHHHH
Q psy46 378 QMWQFAPNSVHYLLSLWQRMVASVPYIKAM--EPHQLHTYTPEVTSAYITSRLDSVAVVIRDNLEDPLDDLGMVSQQLEQ 455 (660)
Q Consensus 378 ~~~~~~~~s~~~LL~~W~~l~~~~~~~~~~--~~~~l~~~~~~I~~~yi~srL~~~~~~~~~~~ed~~dd~~~~~~qLe~ 455 (660)
..+ +.+.....+.||..++....+.... -+.....+.+++...-+. |+..++..-. ++|++.||++.+.+.-..
T Consensus 342 ~~~--~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~-k~~yp~d~~~-~~~~d~ed~~~F~e~Rk~ 417 (980)
T 3ibv_A 342 SDD--YDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIK-KMKYDESQEW-DDDPDSEEEAEFQEMRKK 417 (980)
T ss_dssp TCS--SHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHH-TTSCCTTCCC-CCCSSSSTHHHHHHHHHH
T ss_pred CCC--chhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHH-HccCCCcccc-ccccchhHHHHHHHHHHH
Confidence 433 2344566799999998765442211 122334455555555333 5555432110 112222455554443333
Q ss_pred HH----hhhhhcHhhHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhHHHHHHHHHHHHHHHHhcCccc-ccC--CCcccc
Q psy46 456 LS----AIGRCEYQKTCSLLVQLFDQSARLYQELISTPSPNQIDIAIQEGRLTWLVYIIGAAVGGRVS-FNS--NEDHDA 528 (660)
Q Consensus 456 i~----~l~r~~~~~t~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~E~~l~WLv~i~g~~l~~~~~-~~~--~~~~~~ 528 (660)
++ .++...++.+++.+.+.+...+.+. +.+ ++. .-|+ ++.--++..|+ +++... ... .++.+.
T Consensus 418 l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~---l~~--~~~---~~W~-~~EaaL~~l~~-iaE~i~~~~~~~~~~~~~ 487 (980)
T 3ibv_A 418 LKIFQDTINSIDSSLFSSYMYSAITSSLSTA---ATL--SPE---NSWQ-LIEFALYETYI-FGEGLRGPDAFFNEVDKS 487 (980)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH---TTS--CHH---HHHH-HHHHHHHHHHH-TTTTCCSGGGTBCSSSCC
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHH---hcc--cCC---CCHH-HHHHHHHHHHH-HHhhccccccccCcccch
Confidence 33 3445567777775555555554432 111 111 2254 55556666666 443111 000 011111
Q ss_pred CccchhHHHHHHHHhhccccCCCCCCchHHHHHHHHHHHHHHHHHH
Q psy46 529 MDGELLVCRVLQLMNLTDPRLLGPGPGCEKLELAMLSFFEQFRKIY 574 (660)
Q Consensus 529 ~d~~L~~~~v~~l~~~~~~~l~~~~~~s~~l~~a~l~F~~~~~~~Y 574 (660)
. ..+ +.-+.++++ +.. +....|++..+..|.+.||.+-.
T Consensus 488 l-p~l-~~ll~~ll~---s~i--~~~~hp~V~~~~~~~l~rys~~~ 526 (980)
T 3ibv_A 488 P-TVL-SQILALVTT---SQV--CRHPHPLVQLLYMEILVRYASFF 526 (980)
T ss_dssp B-CHH-HHHHHHHHH---SST--TTCCCHHHHHHHHHHHHHTGGGG
T ss_pred h-HHH-HHHHHHHHh---CCC--CCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 123 333333333 222 44578999999999999998744
No 7
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.90 E-value=9.4e-21 Score=228.34 Aligned_cols=485 Identities=12% Similarity=0.082 Sum_probs=282.7
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCcccccccccccc
Q psy46 1 EVRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDI 80 (660)
Q Consensus 1 ~l~~lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~s~~~~~~c~~iL~~S~~~~~~f~aa~~L~~~i~~~w~~~~~~~~~~~ 80 (660)
++++++++++.+|+ ||++.|++|+++|.+|+++|++|..|..||+.+++++++|+|+.+|++.|.++|+
T Consensus 5 d~~~l~~~l~~~~~-~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~---------- 73 (971)
T 2x1g_F 5 DIARLEEAVVSFYR-SNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWH---------- 73 (971)
T ss_dssp ------CTHHHHHT-STTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGG----------
T ss_pred hHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHh----------
Confidence 47889999999775 5788999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhccCCCCchhHHHhhHHHHHHHHhcC-------Cchh
Q psy46 81 PQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQG-------SVEH 153 (660)
Q Consensus 81 ~~~l~~~~r~~lr~~ll~yl~~~~~~~~~V~~~l~~~la~i~K~~W~d~~~~~~~~~~~i~~v~~~l~~-------~~~~ 153 (660)
.+++++|..+|+++++++.+..+.|++|+++++.+++.|+|++|+ .|++++.++.+.++. ++.+
T Consensus 74 --~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-------~Wp~~l~~l~~~~~~~~~~~~~~~~~ 144 (971)
T 2x1g_F 74 --EVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-------EWPGAIEEVINTFQNQRMPNVSADVQ 144 (971)
T ss_dssp --GCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-------C------HHHHHHHHTC----CHHHH
T ss_pred --hCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-------cccHHHHHHHHHHhccccccCCCHHH
Confidence 999999999999999999987656899999999999999999996 289999999998764 4678
Q ss_pred HHHHHHHHHHHHHHhcccccccccccHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHH
Q psy46 154 CIIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLA 233 (660)
Q Consensus 154 ~~igl~iL~~Lv~E~~~~~~s~~~~~~~~hrk~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~ 233 (660)
+..++.+|+.+.+|+... . ..... ...+-.++ ..++.++.+..++++.... + ..+.....+...+++.+
T Consensus 145 ~~~~l~iL~~l~EEi~~~---~-~~~~r--~~~~~~l~-~~~~~vl~ll~~~l~~~~~---~-~~~~~~~~~~~~al~~l 213 (971)
T 2x1g_F 145 LWIMLEVLTAIPEEAQVI---H-TSVKR--VVLRAEIA-KRVQLVIHTVERYLKLQMN---R-VWDAEAYSNMNRAVKCV 213 (971)
T ss_dssp HHHHHHHHHHHHHHHHHC---C-CSSCH--HHHHHHHH-TTHHHHHHHHHHHHHHHTT---S-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhcc---C-cHHHH--HHHHHHHH-HHHHHHHHHHHHHHhcccC---C-CCCccchhHHHHHHHHH
Confidence 999999999999997643 1 11100 11111112 2456666665555543211 0 00011112444444444
Q ss_pred HHhccccccCCCCCCCCCCcccccCCCcccccccCchhHHHHHHH----Hhh-----------CCchhHHHHHHHHHHHh
Q psy46 234 QNCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNL----YHS-----------LPSTLSHLALACLVQIA 298 (660)
Q Consensus 234 ~~~Ls~dF~~~~~de~~~~~~~v~~p~sW~~~l~~~~~l~llf~l----y~~-----------~~~~l~~~al~cL~qla 298 (660)
.. |...+ |.|.-.++.+++.+|++ |.. -++++...|++|++++.
T Consensus 214 ~~---~~~~~------------------~ip~~~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~ 272 (971)
T 2x1g_F 214 GT---WIKNI------------------GYTIEGCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNII 272 (971)
T ss_dssp HH---HHHHS------------------CCCGGGHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HH---HHhhC------------------CcCccccccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHH
Confidence 33 33311 11111336688888871 200 13678999999999998
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHHhhcC---CCCCCC---cchHHHHHHHHHHhhhhcchhhhh----c-----ccCHH
Q psy46 299 SVRRSLFSNAERARFLTQLVNGVKQILQN---PQGLSD---ANNYHEFCRLLARLKSNYQLGELV----M-----VDNYS 363 (660)
Q Consensus 299 slr~sif~~~er~~~l~~l~~g~~~il~~---~~~l~d---~e~~~~~crll~rl~~n~~l~~L~----~-----~~~~~ 363 (660)
+.+.+ +++..++..++.++..+... ...-.| ++.++.+||++.++.++|.- .+. + .+.+.
T Consensus 273 ~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ 347 (971)
T 2x1g_F 273 IQPDC----HNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHST-LLLSGITSADPELSILVH 347 (971)
T ss_dssp HCSGG----GGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHH-HHHHHHHTCCHHHHHHHH
T ss_pred cCccc----cccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH-HHHHHhccCcccccHHHH
Confidence 86431 34566777777776654331 111234 38888999999999987642 222 1 11123
Q ss_pred HHHHHHHHHHHHHHhhcc---cCcccHHHHHHHHHHHhccccccc--cCCC---cchhhchHHHHHHHHHcccchhhhhh
Q psy46 364 EAIQLIAKFTVESLQMWQ---FAPNSVHYLLSLWQRMVASVPYIK--AMEP---HQLHTYTPEVTSAYITSRLDSVAVVI 435 (660)
Q Consensus 364 ~~i~~l~~fT~~~l~~~~---~~~~s~~~LL~~W~~l~~~~~~~~--~~~~---~~l~~~~~~I~~~yi~srL~~~~~~~ 435 (660)
.++.. ...+....+ ...+.....++||..+.+...... ...+ ..+..+.+++....+. ++..++.
T Consensus 348 ~~l~~----ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~p~~-- 420 (971)
T 2x1g_F 348 RIVQE----ILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVR-KSEQPDE-- 420 (971)
T ss_dssp HHHHH----HHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHH-HTSCCCT--
T ss_pred HHHHH----HHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH-HhcCCCc--
Confidence 33333 333333222 234467888999999976321100 0011 1223334444444443 2222210
Q ss_pred ccCC-CCCCCcHHHH----HHHHHHHHhhhhhcHhhHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhHHHHHHHHHHHHH
Q psy46 436 RDNL-EDPLDDLGMV----SQQLEQLSAIGRCEYQKTCSLLVQLFDQSARLYQELISTPSPNQIDIAIQEGRLTWLVYII 510 (660)
Q Consensus 436 ~~~~-ed~~dd~~~~----~~qLe~i~~l~r~~~~~t~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~E~~l~WLv~i~ 510 (660)
++. +++.+|++.+ +..-+.+-.+++...+.+++.+.+.+.+.+..|.. . +. -|. +..=.++.+
T Consensus 421 -~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~---~----~~---~w~-~~eaal~~l 488 (971)
T 2x1g_F 421 -KSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQR---H----PT---HWT-KLEACIYSF 488 (971)
T ss_dssp -TTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHH---C----TT---CCH-HHHHHHHHH
T ss_pred -ccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccC---C----CC---cHH-HHHHHHHHH
Confidence 001 1111112221 23334445566666678888888888888776641 1 11 122 444566667
Q ss_pred HHHhcCcccccCCCccccCccchhHHHHHHHH-hhccccCCCCCCchHHHHHHHHHHHHHHHHHHhccc
Q psy46 511 GAAVGGRVSFNSNEDHDAMDGELLVCRVLQLM-NLTDPRLLGPGPGCEKLELAMLSFFEQFRKIYVGDQ 578 (660)
Q Consensus 511 g~~l~~~~~~~~~~~~~~~d~~L~~~~v~~l~-~~~~~~l~~~~~~s~~l~~a~l~F~~~~~~~Yl~~~ 578 (660)
|++..| ... ..+.. +-.++.++ ++.. ....|++..+.+|.+.+|.. ++.++
T Consensus 489 ~~iae~-~~~-------~~~~~--l~~l~~~l~~l~~------~d~~~~vr~~a~~~l~~~~~-~l~~~ 540 (971)
T 2x1g_F 489 QSVAEH-FGG-------EEKRQ--IPRLMRVLAEIPY------EKLNVKLLGTALETMGSYCN-WLMEN 540 (971)
T ss_dssp HHTTTC--------------CH--HHHHHHHHHHSCT------TTSCHHHHHHHHHHHHHTHH-HHC--
T ss_pred HHHHhh-cCh-------hhhHH--HHHHHHHHHhcCc------cccCHHHHHHHHHHHHHHHH-HHhcC
Confidence 775433 110 01111 23344432 2220 12368899999999999985 55544
No 8
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.45 E-value=2.4e-10 Score=137.46 Aligned_cols=150 Identities=10% Similarity=0.055 Sum_probs=122.2
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHhcCC-ChhHHHHHHHHHHHHhcCCcccccccccccc
Q psy46 2 VRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGD-SSYAQAIAANTLTKLISRPAQGLSLQQRIDI 80 (660)
Q Consensus 2 l~~lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~s~~~~~~c~~iL~~S~-~~~~~f~aa~~L~~~i~~~w~~~~~~~~~~~ 80 (660)
++++.++....+ +||++.| ||+.|.++.++|+.|..+..|+.+.+ +..++++|+..|++.|.++|..- +-
T Consensus 4 ~~~l~~~L~~~~-spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~------~~ 74 (960)
T 1wa5_C 4 LETVAKFLAESV-IASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDE------NG 74 (960)
T ss_dssp HHHHHHHHHHTT-SGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCS------SS
T ss_pred HHHHHHHHHHhc-CCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCc------cc
Confidence 455666665533 5567777 99999999999999999999997654 56999999999999999999610 00
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhccCCCCchhHHHhhHHHHHHHHhc-CCchhHHHHHH
Q psy46 81 PQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQ-GSVEHCIIGVQ 159 (660)
Q Consensus 81 ~~~l~~~~r~~lr~~ll~yl~~~~~~~~~V~~~l~~~la~i~K~~W~d~~~~~~~~~~~i~~v~~~l~-~~~~~~~igl~ 159 (660)
+..+++++|..||+.+++.+... ++.|+++++.+++.|++.+|++ .|+++++++.+.++ +++.+..-|+.
T Consensus 75 ~~~l~~~~k~~ik~~ll~~l~~~---~~~ir~~l~~~ia~ia~~d~p~------~Wp~ll~~L~~~l~s~~~~~~~~aL~ 145 (960)
T 1wa5_C 75 NHLLPANNVELIKKEIVPLMISL---PNNLQVQIGEAISSIADSDFPD------RWPTLLSDLASRLSNDDMVTNKGVLT 145 (960)
T ss_dssp CBSSCHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHSTT------TCTTHHHHHHTTCCSSCTTHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhhCcc------chhHHHHHHHHHhCCCCHHHHHHHHH
Confidence 12589999999999999999874 4899999999999999999975 38999999999875 34567778899
Q ss_pred HHHHHHHHhc
Q psy46 160 ILSQLTGEMN 169 (660)
Q Consensus 160 iL~~Lv~E~~ 169 (660)
+|..++.++.
T Consensus 146 ~l~~i~~~~~ 155 (960)
T 1wa5_C 146 VAHSIFKRWR 155 (960)
T ss_dssp HHHHHHGGGT
T ss_pred HHHHHHHHHH
Confidence 9999887664
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.41 E-value=2.9e-10 Score=134.83 Aligned_cols=146 Identities=14% Similarity=0.198 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHh--cCCChhHHHHHHHHHHHHhcCCccccccccccc
Q psy46 2 VRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLD--RGDSSYAQAIAANTLTKLISRPAQGLSLQQRID 79 (660)
Q Consensus 2 l~~lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~s~~~~~~c~~iL~--~S~~~~~~f~aa~~L~~~i~~~w~~~~~~~~~~ 79 (660)
+++|.++.+..+ +||++.|++||+.|.++.++|+.+..+..|+. .+.++.++++|+..|++.+.++|.
T Consensus 12 ~~~l~~~l~~~~-s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~--------- 81 (852)
T 4fdd_A 12 LQQILQLLKESQ-SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ--------- 81 (852)
T ss_dssp HHHHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG---------
T ss_pred HHHHHHHHHHHh-CcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccC---------
Confidence 455666666656 45899999999999999999999999999998 567789999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhccCCCCchhHHHhhHHHHHHHHhcC-CchhHHHHH
Q psy46 80 IPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQG-SVEHCIIGV 158 (660)
Q Consensus 80 ~~~~l~~~~r~~lr~~ll~yl~~~~~~~~~V~~~l~~~la~i~K~~W~d~~~~~~~~~~~i~~v~~~l~~-~~~~~~igl 158 (660)
.+++++|..+|+.+++.+.. .++.|++++..+++.|.+.+|.+ .|+++++.+.+.++. ++..+..++
T Consensus 82 ---~~~~~~~~~ik~~ll~~l~~---~~~~vr~~~a~~i~~ia~~~~~~------~wp~ll~~L~~~l~~~~~~~r~~al 149 (852)
T 4fdd_A 82 ---NFPNGVTDFIKSECLNNIGD---SSPLIRATVGILITTIASKGELQ------NWPDLLPKLCSLLDSEDYNTCEGAF 149 (852)
T ss_dssp ---GCCHHHHHHHHHHHHTTTTC---SSHHHHHHHHHHHHHHHHHTTTT------TCTTHHHHHHHHHSCSSHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHhcCcc------ccHHHHHHHHHHHcCCCHHHHHHHH
Confidence 89999999999999998653 35789999999999999998654 379999999887753 456677788
Q ss_pred HHHHHHHHHhc
Q psy46 159 QILSQLTGEMN 169 (660)
Q Consensus 159 ~iL~~Lv~E~~ 169 (660)
..|..+.+++.
T Consensus 150 ~~L~~i~~~~~ 160 (852)
T 4fdd_A 150 GALQKICEDSA 160 (852)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhH
Confidence 88888877664
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.15 E-value=1.2e-08 Score=120.15 Aligned_cols=251 Identities=13% Similarity=0.097 Sum_probs=168.6
Q ss_pred ChhHHHHHHHHH-hcCCCHHHHHHHHHHHHHhhcC--cccHHHHHHHHhcC-CChhHHHHHHHHHHHHhcCCcccccccc
Q psy46 1 EVRQLECLCKQL-YESADGNLRVEAEKALVNFQNA--PDTLAKCQLLLDRG-DSSYAQAIAANTLTKLISRPAQGLSLQQ 76 (660)
Q Consensus 1 ~l~~lE~~~~~l-y~~~d~~~r~~Ae~~L~~f~~s--~~~~~~c~~iL~~S-~~~~~~f~aa~~L~~~i~~~w~~~~~~~ 76 (660)
|..++.++...+ + +||++.|++||+.|.+++++ |+.|..+..+|.++ .++.++++|+..|++.+.+.|..-. ..
T Consensus 2 d~~~l~~~L~~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~-~~ 79 (861)
T 2bpt_A 2 STAEFAQLLENSIL-SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKT-QQ 79 (861)
T ss_dssp CHHHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHH-HH
T ss_pred CHHHHHHHHHHccc-CcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHH-HH
Confidence 346788888887 5 56899999999999999986 99999999999876 4679999999999999988862000 00
Q ss_pred ccccCCC-CCHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhccCCCCchhHHHhhHHHHHHHHhcC--Cchh
Q psy46 77 RIDIPQG-LSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQG--SVEH 153 (660)
Q Consensus 77 ~~~~~~~-l~~~~r~~lr~~ll~yl~~~~~~~~~V~~~l~~~la~i~K~~W~d~~~~~~~~~~~i~~v~~~l~~--~~~~ 153 (660)
+...-.. +++++|..+|+.+++.+.. .++.|+++++.+++.|.+..|+.. .|+++++.+.+.+++ ++..
T Consensus 80 ~~~~~~~~l~~~~~~~ik~~ll~~l~~---~~~~vr~~~~~~l~~i~~~~~p~~-----~w~~ll~~L~~~l~~~~~~~~ 151 (861)
T 2bpt_A 80 FAQRWITQVSPEAKNQIKTNALTALVS---IEPRIANAAAQLIAAIADIELPHG-----AWPELMKIMVDNTGAEQPENV 151 (861)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHGGGT-----CCHHHHHHHHHHTSTTSCHHH
T ss_pred HHHhHhhhCCHHHHHHHHHHHHHHHCC---CchHHHHHHHHHHHHHHHhhCccc-----ccHHHHHHHHHHHhcCCCHHH
Confidence 0000005 8999999999999998765 347889999999999999998631 379999999988754 5677
Q ss_pred HHHHHHHHHHHHHHhcccccccccccHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHH
Q psy46 154 CIIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLA 233 (660)
Q Consensus 154 ~~igl~iL~~Lv~E~~~~~~s~~~~~~~~hrk~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~ 233 (660)
+..++.+|..+.+++... . + .+. .....++......+... ..+..+...+++.+
T Consensus 152 r~~al~~l~~l~~~~~~~----~-------~----~~~-~~~~~ll~~l~~~l~~~----------~~~~~vr~~al~~l 205 (861)
T 2bpt_A 152 KRASLLALGYMCESADPQ----S-------Q----ALV-SSSNNILIAIVQGAQST----------ETSKAVRLAALNAL 205 (861)
T ss_dssp HHHHHHHHHHHHHTSSTT----S-------S----TTG-GGHHHHHHHHHHHHSTT----------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChh----h-------h----HHH-HHHHHHHHHHHHhhcCC----------CCCHHHHHHHHHHH
Confidence 888999999999886532 0 0 111 23444444443332210 01234556777777
Q ss_pred HHhccccccCCCCCCCCCCcccccCCCcccccccCchhHHHHHHHHhhCCchhHHHHHHHHHHHhccccCCC
Q psy46 234 QNCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLF 305 (660)
Q Consensus 234 ~~~Ls~dF~~~~~de~~~~~~~v~~p~sW~~~l~~~~~l~llf~ly~~~~~~l~~~al~cL~qlaslr~sif 305 (660)
..++.|- +...+ .|.. .+.+++.++.....-++.....+++||..++......|
T Consensus 206 ~~~~~~~--~~~~~-------------~~~~---~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~ 259 (861)
T 2bpt_A 206 ADSLIFI--KNNME-------------REGE---RNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFM 259 (861)
T ss_dssp HHHGGGC--HHHHT-------------SHHH---HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHH--HHHcc-------------ChhH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766441 11000 1100 02355555554433345677888888888877654433
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.12 E-value=6e-09 Score=113.41 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=120.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhc--CcccHHHHHHHHhcCC-ChhHHHHHHHHHHHHhcCCcccccccccccc
Q psy46 4 QLECLCKQLYESADGNLRVEAEKALVNFQN--APDTLAKCQLLLDRGD-SSYAQAIAANTLTKLISRPAQGLSLQQRIDI 80 (660)
Q Consensus 4 ~lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~--s~~~~~~c~~iL~~S~-~~~~~f~aa~~L~~~i~~~w~~~~~~~~~~~ 80 (660)
+|.++...++ +||++.|++||+.|.++.+ .|+.+..+..+|.+++ ++.++.+|+..|++.+.++|..- ...+.+.
T Consensus 2 ~l~~~L~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~-~~~~~~~ 79 (462)
T 1ibr_B 2 ELITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDI-KAQYQQR 79 (462)
T ss_dssp CHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHH-HHHHHHH
T ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHH-HHHHHhh
Confidence 3566677766 5589999999999999997 4899999999998875 67999999999999999885200 0000000
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhccCCCCchhHHHhhHHHHHHHHhcC---CchhHHHH
Q psy46 81 PQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQG---SVEHCIIG 157 (660)
Q Consensus 81 ~~~l~~~~r~~lr~~ll~yl~~~~~~~~~V~~~l~~~la~i~K~~W~d~~~~~~~~~~~i~~v~~~l~~---~~~~~~ig 157 (660)
...++.++|..+|+.+++.+... ++.| ++++.+++.|.+..|++. .|+++++.+.+.+++ ++..+..+
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~---~~~v-~~~~~~i~~ia~~~~~~~-----~w~~ll~~L~~~l~~~~~~~~~r~~a 150 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTE---TYRP-SSASQCVAGIACAEIPVN-----QWPELIPQLVANVTNPNSTEHMKEST 150 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCC---CSSS-CSHHHHHHHHHHHHGGGT-----CCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCC---Cchh-hHHHHHHHHHHHHhcccc-----ccHHHHHHHHHHhccCCCCHHHHHHH
Confidence 01799999999999999987653 3456 899999999999988641 378999999887753 56778889
Q ss_pred HHHHHHHHHHhc
Q psy46 158 VQILSQLTGEMN 169 (660)
Q Consensus 158 l~iL~~Lv~E~~ 169 (660)
+..|..+++++.
T Consensus 151 l~~l~~l~~~~~ 162 (462)
T 1ibr_B 151 LEAIGYICQDID 162 (462)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHhCC
Confidence 999999998864
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.42 E-value=5.3e-06 Score=97.72 Aligned_cols=249 Identities=14% Similarity=0.118 Sum_probs=166.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--cccHHHHHHHHhcC-CChhHHHHHHHHHHHHhc-----------CCc
Q psy46 4 QLECLCKQLYESADGNLRVEAEKALVNFQNA--PDTLAKCQLLLDRG-DSSYAQAIAANTLTKLIS-----------RPA 69 (660)
Q Consensus 4 ~lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~s--~~~~~~c~~iL~~S-~~~~~~f~aa~~L~~~i~-----------~~w 69 (660)
+|.++.+.++ ++|++.|++|++.|.++.++ |+.+..+..+|.++ .++.++.+|+.+|++.+. +.|
T Consensus 2 ~l~~~L~~~~-s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w 80 (876)
T 1qgr_A 2 ELITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (876)
T ss_dssp CHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhh
Confidence 3556666655 56899999999999999987 88999999999876 467999999999999885 458
Q ss_pred cccccccccccCCCCCHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhccCCCCchhHHHhhHHHHHHHHhcC
Q psy46 70 QGLSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQG 149 (660)
Q Consensus 70 ~~~~~~~~~~~~~~l~~~~r~~lr~~ll~yl~~~~~~~~~V~~~l~~~la~i~K~~W~d~~~~~~~~~~~i~~v~~~l~~ 149 (660)
. .++++.|..+|+.+++.+.+. ++.+ ++++++++.|.+..++. . .|+++++.+.+.++.
T Consensus 81 ~------------~l~~~~~~~ik~~ll~~l~~~---~~~~-~~~~~~l~~i~~~~~~~---~--~w~~ll~~l~~~l~~ 139 (876)
T 1qgr_A 81 L------------AIDANARREVKNYVLHTLGTE---TYRP-SSASQCVAGIACAEIPV---N--QWPELIPQLVANVTN 139 (876)
T ss_dssp H------------TSCHHHHHHHHHHHHHHTTTC---CSSS-CHHHHHHHHHHHHHGGG---T--CCTTHHHHHHHHHHC
T ss_pred c------------cCCHHHHHHHHHHHHHHhCCC---cHHH-HHHHHHHHHHHHhhCcc---c--ccHHHHHHHHHHHhC
Confidence 8 899999999999999987653 2345 89999999999998752 1 378999999888753
Q ss_pred ---CchhHHHHHHHHHHHHHHhcccccccccccHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccCCCCchhHHHH
Q psy46 150 ---SVEHCIIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFM 226 (660)
Q Consensus 150 ---~~~~~~igl~iL~~Lv~E~~~~~~s~~~~~~~~hrk~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~ 226 (660)
++.....++..|..+++++... . |. ..+..++....+.+ . .+ +.+..+.
T Consensus 140 ~~~~~~~r~~al~~l~~l~~~~~~~-----------~------~~-~~~~~ll~~l~~~l----~--~~----~~~~~vr 191 (876)
T 1qgr_A 140 PNSTEHMKESTLEAIGYICQDIDPE-----------Q------LQ-DKSNEILTAIIQGM----R--KE----EPSNNVK 191 (876)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHSCHH-----------H------HG-GGHHHHHHHHHHHH----S--TT----CSCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCHh-----------h------HH-hHHHHHHHHHHHhh----c--CC----CCCHHHH
Confidence 4567788999999999876421 0 12 23444444433333 2 00 0012344
Q ss_pred HHHHHHHHHhccccccCCCCCCCCCCcccccCCCcccccccCchhHHHHHHHHhhCCchhHHHHHHHHHHHhccccCCCC
Q psy46 227 TQLLGLAQNCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFS 306 (660)
Q Consensus 227 ~~~L~l~~~~Ls~dF~~~~~de~~~~~~~v~~p~sW~~~l~~~~~l~llf~ly~~~~~~l~~~al~cL~qlaslr~sif~ 306 (660)
..+++.+..++.+ .+...+ ...|++ .+++.++.....-++.....+++||..++......|
T Consensus 192 ~~a~~~l~~~~~~--~~~~~~-----------~~~~~~-----~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~- 252 (876)
T 1qgr_A 192 LAATNALLNSLEF--TKANFD-----------KESERH-----FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM- 252 (876)
T ss_dssp HHHHHHHHHHGGG--CHHHHT-----------SHHHHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGC-
T ss_pred HHHHHHHHHHHHH--HHHHHH-----------hHHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHH-
Confidence 5566666655543 111000 011221 255555554333345678889999999998766554
Q ss_pred hHHHHHHHH-HHHHHHHHhh
Q psy46 307 NAERARFLT-QLVNGVKQIL 325 (660)
Q Consensus 307 ~~er~~~l~-~l~~g~~~il 325 (660)
..|+. .++..+...+
T Consensus 253 ----~~~~~~~l~~~~~~~~ 268 (876)
T 1qgr_A 253 ----ETYMGPALFAITIEAM 268 (876)
T ss_dssp ----HHHHTTTHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHh
Confidence 23444 5555544444
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=94.72 E-value=3.5 Score=50.22 Aligned_cols=147 Identities=13% Similarity=0.103 Sum_probs=101.9
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc----------ccHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCcccc
Q psy46 3 RQLECLCKQLYESADGNLRVEAEKALVNFQNAP----------DTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGL 72 (660)
Q Consensus 3 ~~lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~s~----------~~~~~c~~iL~~S~~~~~~f~aa~~L~~~i~~~w~~~ 72 (660)
.+|.++.+.+. ++|++.|.+|...|.+..+.+ .-.+.+...|. ++++.++..|+.+|...+..
T Consensus 6 ~~l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~----- 78 (1230)
T 1u6g_C 6 YHISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSK----- 78 (1230)
T ss_dssp HHHHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTT-----
T ss_pred hHHHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh-----
Confidence 35777777754 668999999988888765443 22334444454 67889999999999887753
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhccCCC---CchhHHHhhHHHHHHHHhc-
Q psy46 73 SLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDS---EKDEFVFRNVIQDVSNFLQ- 148 (660)
Q Consensus 73 ~~~~~~~~~~~l~~~~r~~lr~~ll~yl~~~~~~~~~V~~~l~~~la~i~K~~W~d~---~~~~~~~~~~i~~v~~~l~- 148 (660)
++.+.+..+...++.-+.. ....||...+.+++.+......+. ......|+.+++.+.+.+.
T Consensus 79 -----------~~~~~~~~i~~~Ll~~l~d---~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~ 144 (1230)
T 1u6g_C 79 -----------VKEYQVETIVDTLCTNMLS---DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK 144 (1230)
T ss_dssp -----------SCHHHHHHHHHHHHHHTTC---SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC
T ss_pred -----------CCHHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC
Confidence 5666777777777776543 345689999999999998765431 0011236788888888775
Q ss_pred -CCchhHHHHHHHHHHHHHHhcc
Q psy46 149 -GSVEHCIIGVQILSQLTGEMNQ 170 (660)
Q Consensus 149 -~~~~~~~igl~iL~~Lv~E~~~ 170 (660)
.+.....-++.+|..+++.+..
T Consensus 145 ~~~~~~~~~al~~l~~~~~~~~~ 167 (1230)
T 1u6g_C 145 QEDVSVQLEALDIMADMLSRQGG 167 (1230)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTCS
T ss_pred CCchHHHHHHHHHHHHHHHHhHh
Confidence 3456777888899888876643
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=64.69 E-value=2e+02 Score=32.93 Aligned_cols=178 Identities=8% Similarity=0.066 Sum_probs=91.5
Q ss_pred ccccccCchhHHHHHHHHhhCCchhHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhcCCCCCCCcchHHHHH
Q psy46 262 WRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNAERARFLTQLVNGVKQILQNPQGLSDANNYHEFC 341 (660)
Q Consensus 262 W~~~l~~~~~l~llf~ly~~~~~~l~~~al~cL~qlaslr~sif~~~er~~~l~~l~~g~~~il~~~~~l~d~e~~~~~c 341 (660)
.++.+.++.++.+++..+..-.+.+...+..++..++..-+. +-..|+..++..+...+.. ++++.-...+
T Consensus 621 ~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-----~~~~~l~~~lp~l~~~l~~----~~~~v~~~a~ 691 (852)
T 4fdd_A 621 IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQ-----HVKPCIADFMPILGTNLNP----EFISVCNNAT 691 (852)
T ss_dssp GHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG-----GTGGGHHHHHHHHHHTCCT----TSHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHcCc----cchHHHHHHH
Confidence 344555678888888877543356788888888888753322 2245777777776666632 2334444555
Q ss_pred HHHHHhhhhcchhhhhcccCH-HHHHHHHHHHHHHHHhhcccCcccHHHHHHHHHHHhccccccccCCCcchhhchHHHH
Q psy46 342 RLLARLKSNYQLGELVMVDNY-SEAIQLIAKFTVESLQMWQFAPNSVHYLLSLWQRMVASVPYIKAMEPHQLHTYTPEVT 420 (660)
Q Consensus 342 rll~rl~~n~~l~~L~~~~~~-~~~i~~l~~fT~~~l~~~~~~~~s~~~LL~~W~~l~~~~~~~~~~~~~~l~~~~~~I~ 420 (660)
..++.+..+..- ....| ..++..+. ..++..+............=.+|... .|+.+..+.+++.
T Consensus 692 ~alg~i~~~~~~----~~~p~~~~il~~L~----~~l~~~~~~~~~~~~a~~~igrl~~~-------~~~~~~~~l~~~~ 756 (852)
T 4fdd_A 692 WAIGEISIQMGI----EMQPYIPMVLHQLV----EIINRPNTPKTLLENTAITIGRLGYV-------CPQEVAPMLQQFI 756 (852)
T ss_dssp HHHHHHHHHHGG----GGGGGTHHHHHHHH----HHHTCSSCCHHHHHHHHHHHHHHHHH-------CHHHHGGGHHHHH
T ss_pred HHHHHHHHHhhH----hHHHHHHHHHHHHH----HHhCCCCCCchHHHHHHHHHHHHHHh-------CHHHhCccHHHHH
Confidence 566655544321 01122 34444442 33343222111222223333333321 2344445566666
Q ss_pred HHHHHcccchhhhhhccCCCCCCCcHHHHHHHHHHHHhhhhhcHhhHHHHHHHHHH
Q psy46 421 SAYITSRLDSVAVVIRDNLEDPLDDLGMVSQQLEQLSAIGRCEYQKTCSLLVQLFD 476 (660)
Q Consensus 421 ~~yi~srL~~~~~~~~~~~ed~~dd~~~~~~qLe~i~~l~r~~~~~t~~~L~~l~~ 476 (660)
..++. .|.. .+|.+....-+..+..+-+.+|....+.+...++
T Consensus 757 ~~~~~-~l~~------------~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~ 799 (852)
T 4fdd_A 757 RPWCT-SLRN------------IRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCD 799 (852)
T ss_dssp HHHHH-HHHT------------SCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHH
T ss_pred HHHHH-Hhcc------------ccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 66666 2221 1112234556666777777777766655554444
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=60.67 E-value=64 Score=34.82 Aligned_cols=98 Identities=19% Similarity=0.188 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc---Cc--------ccHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCccccc
Q psy46 5 LECLCKQLYESADGNLRVEAEKALVNFQN---AP--------DTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLS 73 (660)
Q Consensus 5 lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~---s~--------~~~~~c~~iL~~S~~~~~~f~aa~~L~~~i~~~w~~~~ 73 (660)
+|.+++.+.+ .|.+.+.+|-+.++.+-. +| ..++.+-.+|.++.++.+|+.|+.+|.+.....
T Consensus 59 i~~~v~~l~s-~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~----- 132 (510)
T 3ul1_B 59 VEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT----- 132 (510)
T ss_dssp HHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-----
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-----
Confidence 6788888764 478888888888777642 22 247888889999999999999999999987542
Q ss_pred cccccccCCCCCHHHHHHHH-----HHHHHHHhcCCCChhHHHHHHHHHHHHHHh
Q psy46 74 LQQRIDIPQGLSLQQRIDIR-----NYILNYLATRPKLPNFVIQALVTLFARITK 123 (660)
Q Consensus 74 ~~~~~~~~~~l~~~~r~~lr-----~~ll~yl~~~~~~~~~V~~~l~~~la~i~K 123 (660)
++++..+. ..++..+. +....|+.+.+.++..|..
T Consensus 133 ------------~e~~~~vv~~GaIp~Lv~lL~---s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 133 ------------SEQTKAVVDGGAIPAFISLLA---SPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp ------------HHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHT
T ss_pred ------------HHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHh
Confidence 34444332 33444432 3457788888888888874
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=47.38 E-value=2.9e+02 Score=29.41 Aligned_cols=253 Identities=15% Similarity=0.106 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHHHHhhcC----------cccHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCccccccccccccCCCCCH
Q psy46 17 DGNLRVEAEKALVNFQNA----------PDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDIPQGLSL 86 (660)
Q Consensus 17 d~~~r~~Ae~~L~~f~~s----------~~~~~~c~~iL~~S~~~~~~f~aa~~L~~~i~~~w~~~~~~~~~~~~~~l~~ 86 (660)
++..|.+|-..|.++... .+.++....+|. +.++.++..|+.+|.+..... +
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~-----------------~ 205 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDS-----------------T 205 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTC-----------------H
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCC-----------------c
Confidence 677888888888877653 356777777787 468899999999999987542 1
Q ss_pred HHHHH-----HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhccCCCCchhHHHhhHHHHHHHHhc-CCchhHHHHHHH
Q psy46 87 QQRID-----IRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQ-GSVEHCIIGVQI 160 (660)
Q Consensus 87 ~~r~~-----lr~~ll~yl~~~~~~~~~V~~~l~~~la~i~K~~W~d~~~~~~~~~~~i~~v~~~l~-~~~~~~~igl~i 160 (660)
+.|.. +-..++..+.. .+..|+...+.+++.+....=.... ......+++-+.+++. +++.....++..
T Consensus 206 ~~~~~~~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~~~--~~~~~~~l~~L~~lL~~~d~~v~~~a~~~ 280 (530)
T 1wa5_B 206 DYRDYVLQCNAMEPILGLFNS---NKPSLIRTATWTLSNLCRGKKPQPD--WSVVSQALPTLAKLIYSMDTETLVDACWA 280 (530)
T ss_dssp HHHHHHHHTTCHHHHHHGGGS---CCHHHHHHHHHHHHHHHCCSSSCCC--HHHHGGGHHHHHHHTTCCCHHHHHHHHHH
T ss_pred cchHHHHHcCcHHHHHHHhcc---CCHHHHHHHHHHHHHHhCCCCCCCc--HHHHHhHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22222 22334443332 3567888888888888864311111 1112467777777765 345556667777
Q ss_pred HHHHHHHhcccccccccccHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHhcccc
Q psy46 161 LSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCLTFD 240 (660)
Q Consensus 161 L~~Lv~E~~~~~~s~~~~~~~~hrk~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Ls~d 240 (660)
|..+...-. . .++.. .+...++.+ -+++. +.+..+...++..+.++..
T Consensus 281 L~~L~~~~~-----------~-~~~~~--~~~~~v~~L--------v~lL~--------~~~~~v~~~a~~~L~~l~~-- 328 (530)
T 1wa5_B 281 ISYLSDGPQ-----------E-AIQAV--IDVRIPKRL--------VELLS--------HESTLVQTPALRAVGNIVT-- 328 (530)
T ss_dssp HHHHHSSCH-----------H-HHHHH--HHTTCHHHH--------HHGGG--------CSCHHHHHHHHHHHHHHTT--
T ss_pred HHHHhCCCH-----------H-HHHHH--HhcCcHHHH--------HHHHC--------CCChhhHHHHHHHHHHHHc--
Confidence 777663210 0 11111 111222222 22222 1123344555555544321
Q ss_pred ccCCCCCCCCCCcccccCCCcccccccCchhHHHHHHHHhhCCchhHHHHHHHHHHHhccccCCCChHHHHHHH-HHHHH
Q psy46 241 FIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNAERARFL-TQLVN 319 (660)
Q Consensus 241 F~~~~~de~~~~~~~v~~p~sW~~~l~~~~~l~llf~ly~~~~~~l~~~al~cL~qlaslr~sif~~~er~~~l-~~l~~ 319 (660)
+. + .....+.+.+.+..+..+...-++.+...|..+|..++.- +.+....++ ..++.
T Consensus 329 --~~--~-------------~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~-----~~~~~~~~~~~~~l~ 386 (530)
T 1wa5_B 329 --GN--D-------------LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-----NTEQIQAVIDANLIP 386 (530)
T ss_dssp --SC--H-------------HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-----CHHHHHHHHHTTCHH
T ss_pred --CC--H-------------HHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-----CHHHHHHHHHCCCHH
Confidence 10 0 1112234456777776666543567888899999988752 222222222 23455
Q ss_pred HHHHhhcCCCCCCCcchHHHHHHHHHHhhhh
Q psy46 320 GVKQILQNPQGLSDANNYHEFCRLLARLKSN 350 (660)
Q Consensus 320 g~~~il~~~~~l~d~e~~~~~crll~rl~~n 350 (660)
.+..++.. .+++.-...|..+..+...
T Consensus 387 ~L~~lL~~----~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 387 PLVKLLEV----AEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHHHH----SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc----CCHHHHHHHHHHHHHHHhc
Confidence 55566643 2445555677777777654
No 17
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=42.65 E-value=5e+02 Score=30.94 Aligned_cols=106 Identities=14% Similarity=0.130 Sum_probs=72.1
Q ss_pred HHhcC--CChhHHHHHHHHHHHHhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q psy46 44 LLDRG--DSSYAQAIAANTLTKLISRPAQGLSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARI 121 (660)
Q Consensus 44 iL~~S--~~~~~~f~aa~~L~~~i~~~w~~~~~~~~~~~~~~l~~~~r~~lr~~ll~yl~~~~~~~~~V~~~l~~~la~i 121 (660)
+|+.. .++.+++.|...|.+.+..... .+++.....+...+++++. +-...||.....+++.+
T Consensus 11 lL~~l~s~d~~~R~~A~~~L~~~l~~~~~------------~~~~~~~~~il~~Ll~~L~---d~~~~vR~~A~~~L~~l 75 (1230)
T 1u6g_C 11 LLEKMTSSDKDFRFMATNDLMTELQKDSI------------KLDDDSERKVVKMILKLLE---DKNGEVQNLAVKCLGPL 75 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTSSSCC------------SCCTTHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHhHHHHHHHHHHHHHccccc------------CCChhHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHH
Confidence 45444 4458999999999998877644 4555555566666777664 34688999999999999
Q ss_pred HhhccCCCCchhHHHhhHHHHHHHHhc-CCchhHHHHHHHHHHHHHHhcc
Q psy46 122 TKLGWFDSEKDEFVFRNVIQDVSNFLQ-GSVEHCIIGVQILSQLTGEMNQ 170 (660)
Q Consensus 122 ~K~~W~d~~~~~~~~~~~i~~v~~~l~-~~~~~~~igl~iL~~Lv~E~~~ 170 (660)
++.. ++ + ....+++.+.+.+. .++..+..++..|..++..+..
T Consensus 76 ~~~~----~~-~-~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~ 119 (1230)
T 1u6g_C 76 VSKV----KE-Y-QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP 119 (1230)
T ss_dssp HTTS----CH-H-HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-
T ss_pred HHhC----CH-H-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCC
Confidence 8643 11 1 23567777777653 3455666778888888887654
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=41.99 E-value=2.1e+02 Score=26.35 Aligned_cols=225 Identities=18% Similarity=0.103 Sum_probs=127.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc----------ccHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCccccc
Q psy46 4 QLECLCKQLYESADGNLRVEAEKALVNFQNAP----------DTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLS 73 (660)
Q Consensus 4 ~lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~s~----------~~~~~c~~iL~~S~~~~~~f~aa~~L~~~i~~~w~~~~ 73 (660)
.++.+...+- +++++.|..|-..|.++.... +.++....+|.. .++.++..|+.+|.+.....
T Consensus 3 ~i~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~----- 75 (252)
T 4hxt_A 3 DVEKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGP----- 75 (252)
T ss_dssp HHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSC-----
T ss_pred cHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCC-----
Confidence 4556665544 556888999999999887544 356666667765 45899999999999886552
Q ss_pred cccccccCCCCCHHHHHH-----HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhccCCCCch--hHHHhhHHHHHHHH
Q psy46 74 LQQRIDIPQGLSLQQRID-----IRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEKD--EFVFRNVIQDVSNF 146 (660)
Q Consensus 74 ~~~~~~~~~~l~~~~r~~-----lr~~ll~yl~~~~~~~~~V~~~l~~~la~i~K~~W~d~~~~--~~~~~~~i~~v~~~ 146 (660)
++.+.. .-..++..+. +....|+...+.+++.+.... +.. ...-...++.+.++
T Consensus 76 ------------~~~~~~~~~~~~i~~l~~ll~---~~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~~~i~~L~~~ 136 (252)
T 4hxt_A 76 ------------DEAIKAIVDAGGVEVLVKLLT---STDSEVQKEAARALANIASGP----DEAIKAIVDAGGVEVLVKL 136 (252)
T ss_dssp ------------HHHHHHHHHTTHHHHHHHHTT---CSSHHHHHHHHHHHHHHTTSC----HHHHHHHHHTTHHHHHHHH
T ss_pred ------------hHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCC----HHHHHHHHHCCCHHHHHHH
Confidence 222332 2333444333 235778888888888887521 110 00112466677777
Q ss_pred hc-CCchhHHHHHHHHHHHHHHhcccccccccccHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccCCCCchhHHH
Q psy46 147 LQ-GSVEHCIIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIF 225 (660)
Q Consensus 147 l~-~~~~~~~igl~iL~~Lv~E~~~~~~s~~~~~~~~hrk~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l 225 (660)
+. +++....-++..|..+...- ...++... +...++ .|-+++. +.+..+
T Consensus 137 l~~~~~~~~~~a~~~L~~l~~~~------------~~~~~~~~--~~~~i~--------~L~~ll~--------~~~~~v 186 (252)
T 4hxt_A 137 LTSTDSEVQKEAARALANIASGP------------DEAIKAIV--DAGGVE--------VLVKLLT--------STDSEV 186 (252)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSC------------HHHHHHHH--HTTHHH--------HHHHHTT--------CSCHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCC------------HHHHHHHH--HCcCHH--------HHHHHHC--------CCCHHH
Confidence 65 34556666777777665321 01111111 111222 2222222 112334
Q ss_pred HHHHHHHHHHhccccccCCCCCCCCCCcccccCCCcccccccCchhHHHHHHHHhhCCchhHHHHHHHHHHHhccccC
Q psy46 226 MTQLLGLAQNCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRS 303 (660)
Q Consensus 226 ~~~~L~l~~~~Ls~dF~~~~~de~~~~~~~v~~p~sW~~~l~~~~~l~llf~ly~~~~~~l~~~al~cL~qlaslr~s 303 (660)
...++..+.++...+- .-+..+.+.+.++.+.++...-++.+...|+.+|..++.-...
T Consensus 187 ~~~a~~~L~~l~~~~~-------------------~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 187 QKEAARALANIASGPT-------------------SAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHHHHTTSBH-------------------HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHHHHcCCH-------------------HHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 5566666655432110 1122355566777777776654667889999999998876544
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=41.60 E-value=2.1e+02 Score=26.31 Aligned_cols=230 Identities=17% Similarity=0.105 Sum_probs=125.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHhcCCccccccccccccCCCCCHHHHHH-----HHHHHHHHHhcCCCChhHHHH
Q psy46 38 LAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDIPQGLSLQQRID-----IRNYILNYLATRPKLPNFVIQ 112 (660)
Q Consensus 38 ~~~c~~iL~~S~~~~~~f~aa~~L~~~i~~~w~~~~~~~~~~~~~~l~~~~r~~-----lr~~ll~yl~~~~~~~~~V~~ 112 (660)
++..-.+|..+ ++.++..|+.+|.+.....- +.+.. .-..+++++.. ....|+.
T Consensus 4 i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~-----------------~~~~~~~~~g~i~~L~~ll~~---~~~~v~~ 62 (252)
T 4hxt_A 4 VEKLVKLLTST-DSETQKEAARDLAEIASGPA-----------------SAIKAIVDAGGVEVLVKLLTS---TDSEVQK 62 (252)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCH-----------------HHHHHHHHTTHHHHHHHHTTC---SCHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCc-----------------HHHHHHHHCCCHHHHHHHHhC---CCHHHHH
Confidence 45555566554 48999999999999887652 22222 33344444432 3477888
Q ss_pred HHHHHHHHHHhhccCCCCch--hHHHhhHHHHHHHHhc-CCchhHHHHHHHHHHHHHHhcccccccccccHHHHHHHHHh
Q psy46 113 ALVTLFARITKLGWFDSEKD--EFVFRNVIQDVSNFLQ-GSVEHCIIGVQILSQLTGEMNQISEADAARSLTKHRKIASS 189 (660)
Q Consensus 113 ~l~~~la~i~K~~W~d~~~~--~~~~~~~i~~v~~~l~-~~~~~~~igl~iL~~Lv~E~~~~~~s~~~~~~~~hrk~~~s 189 (660)
..+.+++.+.... +.. ...-...++.+.+++. ++++.+..++..|..+...- ..+++...
T Consensus 63 ~a~~~L~~l~~~~----~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~------------~~~~~~~~- 125 (252)
T 4hxt_A 63 EAARALANIASGP----DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP------------DEAIKAIV- 125 (252)
T ss_dssp HHHHHHHHHTTSC----HHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC------------HHHHHHHH-
T ss_pred HHHHHHHHHHcCC----hHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC------------HHHHHHHH-
Confidence 8888888887532 110 0011245666777765 34566667777777765311 01222111
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHhccccccCCCCCCCCCCcccccCCCcccccccCc
Q psy46 190 YRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDP 269 (660)
Q Consensus 190 F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Ls~dF~~~~~de~~~~~~~v~~p~sW~~~l~~~ 269 (660)
+...++.+ -+++. +.+..+...++..+.++...+ ...+..+.+.
T Consensus 126 -~~~~i~~L--------~~~l~--------~~~~~~~~~a~~~L~~l~~~~-------------------~~~~~~~~~~ 169 (252)
T 4hxt_A 126 -DAGGVEVL--------VKLLT--------STDSEVQKEAARALANIASGP-------------------DEAIKAIVDA 169 (252)
T ss_dssp -HTTHHHHH--------HHHTT--------CSCHHHHHHHHHHHHHHTTSC-------------------HHHHHHHHHT
T ss_pred -HCCCHHHH--------HHHHc--------CCCHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHC
Confidence 12222222 22222 112334455555555432100 0112245556
Q ss_pred hhHHHHHHHHhhCCchhHHHHHHHHHHHhccccCCCChHHHHHHHH--HHHHHHHHhhcCCCCCCCcchHHHHHHHHHHh
Q psy46 270 NTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNAERARFLT--QLVNGVKQILQNPQGLSDANNYHEFCRLLARL 347 (660)
Q Consensus 270 ~~l~llf~ly~~~~~~l~~~al~cL~qlaslr~sif~~~er~~~l~--~l~~g~~~il~~~~~l~d~e~~~~~crll~rl 347 (660)
+.+..+.++...-++.+...++.+|..++.- +++..+.+. ..+..+..++.. .+++.-...+..+..+
T Consensus 170 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~------~~~~~~~l~~~~~i~~L~~ll~~----~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 170 GGVEVLVKLLTSTDSEVQKEAARALANIASG------PTSAIKAIVDAGGVEVLQKLLTS----TDSEVQKEAQRALENI 239 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTS------BHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC------CHHHHHHHHHCCCHHHHHHHHCC----CcHHHHHHHHHHHHHH
Confidence 6777777777654567899999999999751 233333332 355566666653 3455555677777777
Q ss_pred hhhc
Q psy46 348 KSNY 351 (660)
Q Consensus 348 ~~n~ 351 (660)
....
T Consensus 240 ~~~~ 243 (252)
T 4hxt_A 240 KSGG 243 (252)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 6553
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=40.92 E-value=3.1e+02 Score=27.95 Aligned_cols=266 Identities=15% Similarity=0.097 Sum_probs=143.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----------cccHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCcccccc
Q psy46 5 LECLCKQLYESADGNLRVEAEKALVNFQNA----------PDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSL 74 (660)
Q Consensus 5 lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~s----------~~~~~~c~~iL~~S~~~~~~f~aa~~L~~~i~~~w~~~~~ 74 (660)
+..+++.+-.+.++..|..|-..|.++... .+.++....+|.. .++.++..|+.+|.+.....
T Consensus 66 i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~vr~~a~~~L~~l~~~~------ 138 (450)
T 2jdq_A 66 VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS-EFEDVQEQAVWALGNIAGDS------ 138 (450)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHccCC------
Confidence 445555544443678888888888887652 3566777777764 57899999999999887653
Q ss_pred ccccccCCCCCHHHHHH-----HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhccCCCCchhHHHhhHHHHHHHHhc-
Q psy46 75 QQRIDIPQGLSLQQRID-----IRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQ- 148 (660)
Q Consensus 75 ~~~~~~~~~l~~~~r~~-----lr~~ll~yl~~~~~~~~~V~~~l~~~la~i~K~~W~d~~~~~~~~~~~i~~v~~~l~- 148 (660)
++.|.. +-..++..+.. ..+..|+...+.++..+.+..-..... . ....+++-+.+++.
T Consensus 139 -----------~~~~~~~~~~~~i~~L~~~l~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~-~-~~~~~l~~L~~~l~~ 203 (450)
T 2jdq_A 139 -----------TMCRDYVLDCNILPPLLQLFSK--QNRLTMTRNAVWALSNLCRGKSPPPEF-A-KVSPCLNVLSWLLFV 203 (450)
T ss_dssp -----------HHHHHHHHHTTCHHHHHHHTTS--CCCHHHHHHHHHHHHHHHCCSSSCCCG-G-GTGGGHHHHHHHTTC
T ss_pred -----------HHHHHHHHHCCCHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCCCCCCCH-H-HHHHHHHHHHHHHcc
Confidence 122322 23344444432 235778889999999988654222111 1 12567777777765
Q ss_pred CCchhHHHHHHHHHHHHHHhcccccccccccHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHH
Q psy46 149 GSVEHCIIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQ 228 (660)
Q Consensus 149 ~~~~~~~igl~iL~~Lv~E~~~~~~s~~~~~~~~hrk~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~ 228 (660)
+++.....++..|..+...-. ..++... ....++.+. .+ +. +.+..+...
T Consensus 204 ~~~~v~~~a~~~L~~l~~~~~------------~~~~~~~--~~~~i~~L~----~l----l~--------~~~~~v~~~ 253 (450)
T 2jdq_A 204 SDTDVLADACWALSYLSDGPN------------DKIQAVI--DAGVCRRLV----EL----LM--------HNDYKVVSP 253 (450)
T ss_dssp CCHHHHHHHHHHHHHHTSSSH------------HHHHHHH--HTTTHHHHH----HH----TT--------CSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCc------------HHHHHHH--HcCcHHHHH----HH----HC--------CCchhHHHH
Confidence 334455555666655543110 0111111 122222222 22 22 112334455
Q ss_pred HHHHHHHhccccccCCCCCCCCCCcccccCCCcccccccCchhHHHHHHHHhhCCchhHHHHHHHHHHHhccccCCCChH
Q psy46 229 LLGLAQNCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNA 308 (660)
Q Consensus 229 ~L~l~~~~Ls~dF~~~~~de~~~~~~~v~~p~sW~~~l~~~~~l~llf~ly~~~~~~l~~~al~cL~qlaslr~sif~~~ 308 (660)
++..+.++.. + + + .-...+.+.+.+..+..+...-++.+...++.+|..++.- +++
T Consensus 254 a~~~L~~l~~----~---~---~---------~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~-----~~~ 309 (450)
T 2jdq_A 254 ALRAVGNIVT----G---D---D---------IQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAG-----NRA 309 (450)
T ss_dssp HHHHHHHHTT----S---C---H---------HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-----CHH
T ss_pred HHHHHHHHhh----C---C---h---------HHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-----CHH
Confidence 5555544321 0 0 0 0112344556777777776643467888999999998751 122
Q ss_pred HHHHHH-HHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhhhh
Q psy46 309 ERARFL-TQLVNGVKQILQNPQGLSDANNYHEFCRLLARLKSN 350 (660)
Q Consensus 309 er~~~l-~~l~~g~~~il~~~~~l~d~e~~~~~crll~rl~~n 350 (660)
.....+ ..++..+..++.. .+++.-...|..+..+...
T Consensus 310 ~~~~~~~~~~l~~L~~~l~~----~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 310 QIQTVIDANIFPALISILQT----AEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHTTHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhc----CCHHHHHHHHHHHHHHHcC
Confidence 222222 2445555555553 2445555677777776554
No 21
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=37.66 E-value=2.5e+02 Score=26.02 Aligned_cols=139 Identities=15% Similarity=0.117 Sum_probs=79.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc-C---------cccHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCcccccc
Q psy46 5 LECLCKQLYESADGNLRVEAEKALVNFQN-A---------PDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSL 74 (660)
Q Consensus 5 lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~-s---------~~~~~~c~~iL~~S~~~~~~f~aa~~L~~~i~~~w~~~~~ 74 (660)
++.+...+.+ +|++.|..|-..|.++.. + .+.++....+|..+ ++.++..|+.+|.+.....
T Consensus 14 ~~~~~~~L~s-~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~------ 85 (252)
T 4db8_A 14 LPQMTQQLNS-DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG------ 85 (252)
T ss_dssp HHHHHHHHHS-SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSC------
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCC------
Confidence 4455555554 456677777777744322 1 24556666677654 4899999999999887543
Q ss_pred ccccccCCCCCHHHHHHHHH-HHHHHHhcC-CCChhHHHHHHHHHHHHHHhhccCCCCc-hhHHHhhHHHHHHHHhcC-C
Q psy46 75 QQRIDIPQGLSLQQRIDIRN-YILNYLATR-PKLPNFVIQALVTLFARITKLGWFDSEK-DEFVFRNVIQDVSNFLQG-S 150 (660)
Q Consensus 75 ~~~~~~~~~l~~~~r~~lr~-~ll~yl~~~-~~~~~~V~~~l~~~la~i~K~~W~d~~~-~~~~~~~~i~~v~~~l~~-~ 150 (660)
++.+..+.+ -.+..+... .+....|+...+.+++.+....- .. ....-...++.+.+++.. +
T Consensus 86 -----------~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~lL~~~~ 151 (252)
T 4db8_A 86 -----------NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN---EQIQAVIDAGALPALVQLLSSPN 151 (252)
T ss_dssp -----------HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHGGGCSC
T ss_pred -----------HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc---hHHHHHHHCCCHHHHHHHHhCCC
Confidence 223333222 133333332 12346788888888888853210 00 011113467777777753 4
Q ss_pred chhHHHHHHHHHHHH
Q psy46 151 VEHCIIGVQILSQLT 165 (660)
Q Consensus 151 ~~~~~igl~iL~~Lv 165 (660)
+....-++..|..+.
T Consensus 152 ~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 152 EQILQEALWALSNIA 166 (252)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666677777665
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=32.41 E-value=4.7e+02 Score=27.55 Aligned_cols=262 Identities=15% Similarity=0.120 Sum_probs=144.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc-----------ccHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCccccc
Q psy46 5 LECLCKQLYESADGNLRVEAEKALVNFQNAP-----------DTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLS 73 (660)
Q Consensus 5 lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~s~-----------~~~~~c~~iL~~S~~~~~~f~aa~~L~~~i~~~w~~~~ 73 (660)
++.+.+.+. ++|++.|..|-..|..+.... +.++....+|..++++.+++.|+.+|.+.....
T Consensus 76 l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~----- 149 (528)
T 4b8j_A 76 LPAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT----- 149 (528)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-----
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-----
Confidence 666777665 457888988988888774322 468888888988777999999999999987642
Q ss_pred cccccccCCCCCHHHHHH-----HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhccCCCCch-h-HHHhhHHHHHHHH
Q psy46 74 LQQRIDIPQGLSLQQRID-----IRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEKD-E-FVFRNVIQDVSNF 146 (660)
Q Consensus 74 ~~~~~~~~~~l~~~~r~~-----lr~~ll~yl~~~~~~~~~V~~~l~~~la~i~K~~W~d~~~~-~-~~~~~~i~~v~~~ 146 (660)
++.+.. .-..++..+.. ...-|+...+.+++.|...+ +.. + ..-...++.+.++
T Consensus 150 ------------~~~~~~~~~~g~i~~L~~lL~~---~~~~v~~~a~~aL~~l~~~~----~~~~~~i~~~g~l~~Ll~l 210 (528)
T 4b8j_A 150 ------------SENTKVVIDHGAVPIFVKLLGS---SSDDVREQAVWALGNVAGDS----PKCRDLVLANGALLPLLAQ 210 (528)
T ss_dssp ------------HHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHHHTC----HHHHHHHHHTTCHHHHHHT
T ss_pred ------------HHHHHHHHhCCcHHHHHHHhcC---CCHHHHHHHHHHHHHHhCCC----hhhHHHHHHCCcHHHHHHH
Confidence 223332 23344444432 35678889999998887532 110 0 0011345556666
Q ss_pred hc--CCchhHHHHHHHHHHHHHHhcccccccccccHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccCCCCchhHH
Q psy46 147 LQ--GSVEHCIIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQI 224 (660)
Q Consensus 147 l~--~~~~~~~igl~iL~~Lv~E~~~~~~s~~~~~~~~hrk~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~ 224 (660)
+. .++.....++..|..+...-... .... ....++ .|-+++. +.+..
T Consensus 211 L~~~~~~~v~~~a~~~L~~L~~~~~~~-------~~~~--------~~~~l~--------~L~~lL~--------~~~~~ 259 (528)
T 4b8j_A 211 LNEHTKLSMLRNATWTLSNFCRGKPQP-------SFEQ--------TRPALP--------ALARLIH--------SNDEE 259 (528)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHCSSSCC-------CHHH--------HTTHHH--------HHHHHTT--------CCCHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCCCC-------cHHH--------HHHHHH--------HHHHHHC--------CCCHH
Confidence 63 23455566666776665432110 1110 011222 2222222 11233
Q ss_pred HHHHHHHHHHHhccccccCCCCCCCCCCcccccCCCcccccccCchhHHHHHHHHhhCCchhHHHHHHHHHHHhccccCC
Q psy46 225 FMTQLLGLAQNCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSL 304 (660)
Q Consensus 225 l~~~~L~l~~~~Ls~dF~~~~~de~~~~~~~v~~p~sW~~~l~~~~~l~llf~ly~~~~~~l~~~al~cL~qlaslr~si 304 (660)
+...++..+.++.. + +..-...+.+.+.+..+..+...-++.+...|+.+|..++.-
T Consensus 260 v~~~a~~aL~~l~~----~---------------~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~---- 316 (528)
T 4b8j_A 260 VLTDACWALSYLSD----G---------------TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG---- 316 (528)
T ss_dssp HHHHHHHHHHHHTS----S---------------CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----
T ss_pred HHHHHHHHHHHHHc----C---------------CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC----
Confidence 44444444444221 0 001112344456666666666544567888899999998762
Q ss_pred CChHHHHHHH-HHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhhh
Q psy46 305 FSNAERARFL-TQLVNGVKQILQNPQGLSDANNYHEFCRLLARLKS 349 (660)
Q Consensus 305 f~~~er~~~l-~~l~~g~~~il~~~~~l~d~e~~~~~crll~rl~~ 349 (660)
++..+...+ ..++..+..++..+ .+++.-.+.|..+..+..
T Consensus 317 -~~~~~~~~~~~~~l~~L~~lL~~~---~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 317 -DDAQTQCIIDHQALPCLLSLLTQN---LKKSIKKEACWTISNITA 358 (528)
T ss_dssp -CHHHHHHHHTTTHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHhhhHHHHHHHHcCC---CcHHHHHHHHHHHHHHHC
Confidence 122222222 23455566666632 145566678888887765
No 23
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=31.25 E-value=2.8e+02 Score=29.66 Aligned_cols=99 Identities=19% Similarity=0.172 Sum_probs=66.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---Cc--------ccHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCcccc
Q psy46 4 QLECLCKQLYESADGNLRVEAEKALVNFQN---AP--------DTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGL 72 (660)
Q Consensus 4 ~lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~---s~--------~~~~~c~~iL~~S~~~~~~f~aa~~L~~~i~~~w~~~ 72 (660)
.++.+.+.+++ +|++.+.+|-+.+..+-. +| ..++.+-.+|..+.++.+++.|+.+|.+.....
T Consensus 77 ~l~~lv~~l~s-~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~---- 151 (529)
T 3tpo_A 77 SVEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT---- 151 (529)
T ss_dssp CHHHHHHHHTS-SCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC----
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC----
Confidence 36777777664 478888888777776532 11 346677778989999999999999999987543
Q ss_pred ccccccccCCCCCHHHHHH-----HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHh
Q psy46 73 SLQQRIDIPQGLSLQQRID-----IRNYILNYLATRPKLPNFVIQALVTLFARITK 123 (660)
Q Consensus 73 ~~~~~~~~~~~l~~~~r~~-----lr~~ll~yl~~~~~~~~~V~~~l~~~la~i~K 123 (660)
++++.. .-..++..+. +...-|+...+.+++.|..
T Consensus 152 -------------~~~~~~vv~~Gaip~Lv~LL~---s~~~~v~e~A~~aL~nLa~ 191 (529)
T 3tpo_A 152 -------------SEQTKAVVDGGAIPAFISLLA---SPHAHISEQAVWALGNIAG 191 (529)
T ss_dssp -------------HHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHT
T ss_pred -------------HHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhc
Confidence 233332 2334444332 2346788888888888874
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=26.11 E-value=5.2e+02 Score=26.10 Aligned_cols=265 Identities=12% Similarity=0.062 Sum_probs=141.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCc----------ccHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCcccccccc
Q psy46 7 CLCKQLYESADGNLRVEAEKALVNFQNAP----------DTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQ 76 (660)
Q Consensus 7 ~~~~~ly~~~d~~~r~~Ae~~L~~f~~s~----------~~~~~c~~iL~~S~~~~~~f~aa~~L~~~i~~~w~~~~~~~ 76 (660)
.++. +..++++..|.+|-..|.++..+. +.++....+|..+.++.++-.|+.+|.+.....-.
T Consensus 111 ~L~~-lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~------ 183 (450)
T 2jdq_A 111 IFIE-LLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP------ 183 (450)
T ss_dssp HHHH-HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSS------
T ss_pred HHHH-HHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCC------
Confidence 3443 344567888999988888887542 56777777887777889999999999998865311
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhccCCCCchh-HHHhhHHHHHHHHhc-CCchhH
Q psy46 77 RIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEKDE-FVFRNVIQDVSNFLQ-GSVEHC 154 (660)
Q Consensus 77 ~~~~~~~l~~~~r~~lr~~ll~yl~~~~~~~~~V~~~l~~~la~i~K~~W~d~~~~~-~~~~~~i~~v~~~l~-~~~~~~ 154 (660)
........++-..++..+.. ....|+...+.+++.+....- +..+ ..-..+++.+.+++. .++..+
T Consensus 184 ------~~~~~~~~~~l~~L~~~l~~---~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~ 251 (450)
T 2jdq_A 184 ------PPEFAKVSPCLNVLSWLLFV---SDTDVLADACWALSYLSDGPN---DKIQAVIDAGVCRRLVELLMHNDYKVV 251 (450)
T ss_dssp ------CCCGGGTGGGHHHHHHHTTC---CCHHHHHHHHHHHHHHTSSSH---HHHHHHHHTTTHHHHHHHTTCSCHHHH
T ss_pred ------CCCHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHCCCc---HHHHHHHHcCcHHHHHHHHCCCchhHH
Confidence 11111112333445554432 246677788888877764210 0000 001245666666664 334555
Q ss_pred HHHHHHHHHHHHHhcccccccccccHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Q psy46 155 IIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQ 234 (660)
Q Consensus 155 ~igl~iL~~Lv~E~~~~~~s~~~~~~~~hrk~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~ 234 (660)
.-++..|..+...-. ..++... +...+ ..|-+++. +.+..+...++..+.
T Consensus 252 ~~a~~~L~~l~~~~~------------~~~~~~~--~~~~l--------~~L~~ll~--------~~~~~vr~~a~~~L~ 301 (450)
T 2jdq_A 252 SPALRAVGNIVTGDD------------IQTQVIL--NCSAL--------QSLLHLLS--------SPKESIKKEACWTIS 301 (450)
T ss_dssp HHHHHHHHHHTTSCH------------HHHHHHH--TTTHH--------HHHHHHTT--------CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCh------------HHHHHHH--HCccH--------HHHHHHHc--------CCCHHHHHHHHHHHH
Confidence 566666666543210 0111111 11112 22222322 112334556666555
Q ss_pred HhccccccCCCCCCCCCCcccccCCCcccccccCchhHHHHHHHHhhCCchhHHHHHHHHHHHhccccCCCChHHHHHHH
Q psy46 235 NCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNAERARFL 314 (660)
Q Consensus 235 ~~Ls~dF~~~~~de~~~~~~~v~~p~sW~~~l~~~~~l~llf~ly~~~~~~l~~~al~cL~qlaslr~sif~~~er~~~l 314 (660)
++-. +. ......+.+.+++..+.++...-++.+...+..+|..++.-. +++..+++
T Consensus 302 ~l~~----~~---------------~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~l 357 (450)
T 2jdq_A 302 NITA----GN---------------RAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGG-----SAEQIKYL 357 (450)
T ss_dssp HHTT----SC---------------HHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHC-----CHHHHHHH
T ss_pred HHHc----CC---------------HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC-----CHHHHHHH
Confidence 5321 10 011223444567777777776546678888899999887531 22333333
Q ss_pred H--HHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhh
Q psy46 315 T--QLVNGVKQILQNPQGLSDANNYHEFCRLLARLK 348 (660)
Q Consensus 315 ~--~l~~g~~~il~~~~~l~d~e~~~~~crll~rl~ 348 (660)
. .++..+..++.. .+++.-...+..+..+.
T Consensus 358 ~~~~~i~~L~~ll~~----~~~~v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 358 VELGCIKPLCDLLTV----MDSKIVQVALNGLENIL 389 (450)
T ss_dssp HHHTCHHHHHHGGGS----SCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHhcC----CCHHHHHHHHHHHHHHH
Confidence 2 366666677663 24444444555554443
No 25
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=23.04 E-value=6.7e+02 Score=26.27 Aligned_cols=266 Identities=14% Similarity=0.091 Sum_probs=145.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-c---------ccHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCcccccc
Q psy46 5 LECLCKQLYESADGNLRVEAEKALVNFQNA-P---------DTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSL 74 (660)
Q Consensus 5 lE~~~~~ly~~~d~~~r~~Ae~~L~~f~~s-~---------~~~~~c~~iL~~S~~~~~~f~aa~~L~~~i~~~w~~~~~ 74 (660)
+..+++.+-.+.++..|.+|-..|.++... + +.++....+|.. .++.++..|+.+|.+.....
T Consensus 119 v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~------ 191 (528)
T 4b8j_A 119 VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS-SSDDVREQAVWALGNVAGDS------ 191 (528)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCC------
Confidence 344555443333378888888888888764 3 356666667765 67899999999999886542
Q ss_pred ccccccCCCCCHHHHHHHHH-HHHHHHhcC--CCChhHHHHHHHHHHHHHHhhccCCCCchhHHHhhHHHHHHHHhc-CC
Q psy46 75 QQRIDIPQGLSLQQRIDIRN-YILNYLATR--PKLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQ-GS 150 (660)
Q Consensus 75 ~~~~~~~~~l~~~~r~~lr~-~ll~yl~~~--~~~~~~V~~~l~~~la~i~K~~W~d~~~~~~~~~~~i~~v~~~l~-~~ 150 (660)
+..|..+.+ -.+..+... ......++...+.+++.+.... .. .... ....+++-+.+++. .+
T Consensus 192 -----------~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~-~~-~~~~-~~~~~l~~L~~lL~~~~ 257 (528)
T 4b8j_A 192 -----------PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK-PQ-PSFE-QTRPALPALARLIHSND 257 (528)
T ss_dssp -----------HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS-SC-CCHH-HHTTHHHHHHHHTTCCC
T ss_pred -----------hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-CC-CcHH-HHHHHHHHHHHHHCCCC
Confidence 222332221 122222222 2235778888888998888654 22 1111 12456777777764 34
Q ss_pred chhHHHHHHHHHHHHHHhcccccccccccHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHH
Q psy46 151 VEHCIIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLL 230 (660)
Q Consensus 151 ~~~~~igl~iL~~Lv~E~~~~~~s~~~~~~~~hrk~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L 230 (660)
+....-++..|..+...-. . . +..-.....++. |-+++. +.+..+...++
T Consensus 258 ~~v~~~a~~aL~~l~~~~~-----------~-~--~~~~~~~g~v~~--------Lv~lL~--------~~~~~v~~~a~ 307 (528)
T 4b8j_A 258 EEVLTDACWALSYLSDGTN-----------D-K--IQAVIEAGVCPR--------LVELLL--------HPSPSVLIPAL 307 (528)
T ss_dssp HHHHHHHHHHHHHHTSSCH-----------H-H--HHHHHHTTCHHH--------HHHHTT--------CSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCH-----------H-H--HHHHHHcCHHHH--------HHHHHc--------CCChhHHHHHH
Confidence 5556666777766653210 0 0 111111122222 222222 11233455666
Q ss_pred HHHHHhccccccCCCCCCCCCCcccccCCCcccccccCchhHHHHHHHHhhC-CchhHHHHHHHHHHHhccccCCCChHH
Q psy46 231 GLAQNCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSL-PSTLSHLALACLVQIASVRRSLFSNAE 309 (660)
Q Consensus 231 ~l~~~~Ls~dF~~~~~de~~~~~~~v~~p~sW~~~l~~~~~l~llf~ly~~~-~~~l~~~al~cL~qlaslr~sif~~~e 309 (660)
..+-++.. +. ......+.+.+.+..+..+...- ++.+...|..+|..|+.- +++
T Consensus 308 ~~L~nl~~----~~---------------~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~------~~~ 362 (528)
T 4b8j_A 308 RTVGNIVT----GD---------------DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG------NKD 362 (528)
T ss_dssp HHHHHHTT----SC---------------HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS------CHH
T ss_pred HHHHHHHc----CC---------------HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC------CHH
Confidence 66655432 10 11223455677888888887754 567888899999998751 222
Q ss_pred HHHHH--HHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhhhh
Q psy46 310 RARFL--TQLVNGVKQILQNPQGLSDANNYHEFCRLLARLKSN 350 (660)
Q Consensus 310 r~~~l--~~l~~g~~~il~~~~~l~d~e~~~~~crll~rl~~n 350 (660)
..+.+ ..++..+..++... +++.-...+..+..+...
T Consensus 363 ~~~~~~~~~~i~~L~~lL~~~----~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 363 QIQAVINAGIIGPLVNLLQTA----EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHTTCHHHHHHHHHHS----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhcC----CHHHHHHHHHHHHHHHcC
Confidence 22222 24556666666532 445555677777766554
No 26
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=22.53 E-value=4.9e+02 Score=28.27 Aligned_cols=57 Identities=9% Similarity=0.134 Sum_probs=37.5
Q ss_pred CChhHHHHHHHHHHHHHHhhccCCCCchhHHHhhHHHHHHHHhcC-CchhHHHHHHHHHHHHH
Q psy46 105 KLPNFVIQALVTLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQG-SVEHCIIGVQILSQLTG 166 (660)
Q Consensus 105 ~~~~~V~~~l~~~la~i~K~~W~d~~~~~~~~~~~i~~v~~~l~~-~~~~~~igl~iL~~Lv~ 166 (660)
+..++||.+.+.++.++.+.+ ++.- ....+++.+.++++. ++....-++..|..+..
T Consensus 132 d~~~~VRk~A~~al~~i~~~~-p~~~----~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 132 DEDPYVRKTAAVCVAKLHDIN-AQMV----EDQGFLDSLRDLIADSNPMVVANAVAALSEISE 189 (591)
T ss_dssp CSCHHHHHHHHHHHHHHHHSS-CCCH----HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHHHHhhC-hhhc----ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 446999999999999999854 3311 113578888888853 34445555666655543
No 27
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=20.96 E-value=7.4e+02 Score=26.00 Aligned_cols=266 Identities=11% Similarity=0.038 Sum_probs=140.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCc----------ccHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCccccccc
Q psy46 6 ECLCKQLYESADGNLRVEAEKALVNFQNAP----------DTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQ 75 (660)
Q Consensus 6 E~~~~~ly~~~d~~~r~~Ae~~L~~f~~s~----------~~~~~c~~iL~~S~~~~~~f~aa~~L~~~i~~~w~~~~~~ 75 (660)
..++..+. ++++.-|.+|-..|.++..+. +.++.+..+|.. .++.++-.|+.+|..+....-.
T Consensus 176 ~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~----- 248 (530)
T 1wa5_B 176 PLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKP----- 248 (530)
T ss_dssp HHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSS-----
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCC-----
Confidence 34444443 456888888988888887542 456666667765 6778999999999998865412
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhccCCCCchh-HHHhhHHHHHHHHhcC-Cchh
Q psy46 76 QRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEKDE-FVFRNVIQDVSNFLQG-SVEH 153 (660)
Q Consensus 76 ~~~~~~~~l~~~~r~~lr~~ll~yl~~~~~~~~~V~~~l~~~la~i~K~~W~d~~~~~-~~~~~~i~~v~~~l~~-~~~~ 153 (660)
........++-..++..+.. ....|+...+.+++.+....= ...+ ..-..+++.+.+++.. +...
T Consensus 249 -------~~~~~~~~~~l~~L~~lL~~---~d~~v~~~a~~~L~~L~~~~~---~~~~~~~~~~~v~~Lv~lL~~~~~~v 315 (530)
T 1wa5_B 249 -------QPDWSVVSQALPTLAKLIYS---MDTETLVDACWAISYLSDGPQ---EAIQAVIDVRIPKRLVELLSHESTLV 315 (530)
T ss_dssp -------CCCHHHHGGGHHHHHHHTTC---CCHHHHHHHHHHHHHHHSSCH---HHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred -------CCcHHHHHhHHHHHHHHHcC---CCHHHHHHHHHHHHHHhCCCH---HHHHHHHhcCcHHHHHHHHCCCChhh
Confidence 23333333444455554432 246788888888888874310 0000 0012456666666653 3445
Q ss_pred HHHHHHHHHHHHHHhcccccccccccHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHH
Q psy46 154 CIIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLA 233 (660)
Q Consensus 154 ~~igl~iL~~Lv~E~~~~~~s~~~~~~~~hrk~~~sF~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~ 233 (660)
..-++..|..+...-. ...+.. +....++ .|-.++. +....+...++..+
T Consensus 316 ~~~a~~~L~~l~~~~~------------~~~~~~--~~~~~l~--------~L~~lL~--------~~~~~vr~~A~~aL 365 (530)
T 1wa5_B 316 QTPALRAVGNIVTGND------------LQTQVV--INAGVLP--------ALRLLLS--------SPKENIKKEACWTI 365 (530)
T ss_dssp HHHHHHHHHHHTTSCH------------HHHHHH--HHTTHHH--------HHHHHTT--------CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCH------------HHHHHH--HHcchHH--------HHHHHHc--------CCCHHHHHHHHHHH
Confidence 5566666666543110 011111 1111122 2222222 11233445555555
Q ss_pred HHhccccccCCCCCCCCCCcccccCCCcccccccCchhHHHHHHHHhhCCchhHHHHHHHHHHHhccccCCCChHHHHHH
Q psy46 234 QNCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNAERARF 313 (660)
Q Consensus 234 ~~~Ls~dF~~~~~de~~~~~~~v~~p~sW~~~l~~~~~l~llf~ly~~~~~~l~~~al~cL~qlaslr~sif~~~er~~~ 313 (660)
.++...+ ..+...+.+.+++..+.++...-++.+...+..+|..++.-..+ .++..++
T Consensus 366 ~~l~~~~-------------------~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~---~~~~~~~ 423 (530)
T 1wa5_B 366 SNITAGN-------------------TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ---RPDIIRY 423 (530)
T ss_dssp HHHTTSC-------------------HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTT---CTHHHHH
T ss_pred HHHHcCC-------------------HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC---cHHHHHH
Confidence 4432110 12333445566777777777654667888999999998764211 0133333
Q ss_pred HHH--HHHHHHHhhcCCCCCCCcchHHHHHHHHHHh
Q psy46 314 LTQ--LVNGVKQILQNPQGLSDANNYHEFCRLLARL 347 (660)
Q Consensus 314 l~~--l~~g~~~il~~~~~l~d~e~~~~~crll~rl 347 (660)
+.. ++..+..++.. .+++.....+..+..+
T Consensus 424 l~~~~~l~~L~~ll~~----~~~~v~~~al~aL~~l 455 (530)
T 1wa5_B 424 LVSQGCIKPLCDLLEI----ADNRIIEVTLDALENI 455 (530)
T ss_dssp HHHTTCHHHHHHHTTT----CCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHH
Confidence 333 55555566553 2444443444444443
No 28
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=20.25 E-value=1.1e+03 Score=27.71 Aligned_cols=173 Identities=12% Similarity=0.110 Sum_probs=93.7
Q ss_pred chhHHHHHHHHhhCCchh-HHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHh
Q psy46 269 PNTLKLFFNLYHSLPSTL-SHLALACLVQIASVRRSLFSNAERARFLTQLVNGVKQILQNPQGLSDANNYHEFCRLLARL 347 (660)
Q Consensus 269 ~~~l~llf~ly~~~~~~l-~~~al~cL~qlaslr~sif~~~er~~~l~~l~~g~~~il~~~~~l~d~e~~~~~crll~rl 347 (660)
|.+++.+..-|...+|.. -...|.|+..++.--|..+. +.-...+..++..+.++++. .--+.||.-.+|.+++.++
T Consensus 754 ~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~-~~~~~il~~vf~~Tl~mi~~-~~~~~Pe~r~~ff~ll~~~ 831 (1023)
T 4hat_C 754 EPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIP-QGVILILQSVFECTLDMINK-DFTEYPEHRVEFYKLLKVI 831 (1023)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCH-HHHHHHHHHHHHHHHHHHSS-CSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHhc-ccccChHHHHHHHHHHHHH
Confidence 567777778888643322 25566666666655444332 23356777888888899983 2234578888899999999
Q ss_pred hhhcchhhhhccc--CHHHHHHHHHHHHHHHHhhcccCcccHHHHHHHHHHHhccccccccCCCcchhhchHHHHHHHHH
Q psy46 348 KSNYQLGELVMVD--NYSEAIQLIAKFTVESLQMWQFAPNSVHYLLSLWQRMVASVPYIKAMEPHQLHTYTPEVTSAYIT 425 (660)
Q Consensus 348 ~~n~~l~~L~~~~--~~~~~i~~l~~fT~~~l~~~~~~~~s~~~LL~~W~~l~~~~~~~~~~~~~~l~~~~~~I~~~yi~ 425 (660)
..... ..|...| .+..+++.+ +-+++.. .+|.-..-|.+=..++..+.- ... .+++.+.+++|..
T Consensus 832 ~~~~f-~~~~~~~~~~~~~~~~~~----~~a~~h~--~r~~~~~~l~~~~~ll~~~~~--~~~----~~~~~~f~~~~~~ 898 (1023)
T 4hat_C 832 NEKSF-AAFLELPPAAFKLFVDAI----CWAFKHN--NRDVEVNGLQIALDLVKNIER--MGN----VPFANEFHKNYFF 898 (1023)
T ss_dssp HHHCT-HHHHTSCHHHHHHHHHHH----HHHHTCC--CHHHHHHHHHHHHHHHHHHHH--HCS----SHHHHHHHHHHHH
T ss_pred HHHCh-HHHHcCCHHHHHHHHHHH----HHHcCCC--chHHHHHHHHHHHHHHHHHHh--cCC----hHHHHHHHHHHHH
Confidence 87743 3355555 245555433 2233311 123323333433444432210 001 2356677778877
Q ss_pred cccchhhhhhccCCCCCCCcHHHHHHHHHHHHhhhh
Q psy46 426 SRLDSVAVVIRDNLEDPLDDLGMVSQQLEQLSAIGR 461 (660)
Q Consensus 426 srL~~~~~~~~~~~ed~~dd~~~~~~qLe~i~~l~r 461 (660)
.-+..+=.+..|. +-...++.|-..++.+.+
T Consensus 899 ~~~~~~~~v~td~-----~h~~~f~~~~~~l~~l~~ 929 (1023)
T 4hat_C 899 IFVSETFFVLTDS-----DHKSGFSKQALLLMKLIS 929 (1023)
T ss_dssp HHHHHHHHHHHSS-----SCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-----hhhhhHHHHHHHHHHHHH
Confidence 6666554444332 123345555555544443
Done!