RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy46
(660 letters)
>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain. Members of the
importin-beta (karyopherin-beta) family can bind and
transport cargo by themselves, or can form heterodimers
with importin-alpha. As part of a heterodimer,
importin-beta mediates interactions with the pore
complex, while importin-alpha acts as an adaptor protein
to bind the nuclear localisation signal (NLS) on the
cargo through the classical NLS import of proteins.
Importin-beta is a helicoidal molecule constructed from
19 HEAT repeats. Many nuclear pore proteins contain FG
sequence repeats that can bind to HEAT repeats within
importins.. which is important for importin-beta
mediated transport.
Length = 67
Score = 44.5 bits (106), Expect = 3e-06
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 24 AEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDIPQG 83
AEK L FQ +P +L + Y + +AA TL I+R
Sbjct: 1 AEKQLEQFQKSPGFWLLLLEILANSEDQYVRQLAAITLKNKITR------------RWSS 48
Query: 84 LSLQQRIDIRNYILNYLAT 102
L +++ +I+N +L L +
Sbjct: 49 LPEEEKEEIKNSLLELLLS 67
>gnl|CDD|227432 COG5101, CRM1, Importin beta-related nuclear transport receptor
[Nuclear structure / Intracellular trafficking and
secretion].
Length = 1053
Score = 46.1 bits (109), Expect = 6e-05
Identities = 63/313 (20%), Positives = 113/313 (36%), Gaps = 60/313 (19%)
Query: 17 DGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQ 76
DG + +A++ L FQ PD K +L+ ++ IA + L KLI+ + L
Sbjct: 27 DGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWKLL---- 82
Query: 77 RIDIPQGLSLQQRIDIRNYILNYLATRP------KLPNFVIQALVTLFARITKLGWFDSE 130
P+G R IRNY++ + + +V+ L +I K W +
Sbjct: 83 ----PEG----MRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRN- 133
Query: 131 KDEFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAARSLTKHRKIASSY 190
+ I ++ N Q S+E C + +L L+ E+ S + + K
Sbjct: 134 -----WPTFIPELINVSQISMEVCENNMIVLKLLSEEVFDFSAEQMTQVKKRLLKNQMK- 187
Query: 191 RDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCLTFDFIGTATDESS 250
I+ IF L +L +++ F+ + D+I
Sbjct: 188 --IEFPQIFGLCKQILEYSRDESLIEATLESLLRFL--------EWIPLDYI-------- 229
Query: 251 DDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNAER 310
+ N ++L ++S+P T L+CL +I + R NAE+
Sbjct: 230 ----------------FETNIIELVLEHFNSMPDTRV-ATLSCLTEIVDLGRHPQENAEK 272
Query: 311 ARFLTQLVNGVKQ 323
R L ++
Sbjct: 273 ERILVIHFQCIEF 285
>gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain.
Length = 71
Score = 38.8 bits (91), Expect = 4e-04
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 24 AEKALVNFQNA-PDTLAKC-QLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDIP 81
AEK L F+ P +K Q+L D + +AA L LI+R +
Sbjct: 1 AEKQLEQFEKQDPGFWSKLLQILSDTSSDLQVRQLAALYLKNLITR---------HWNQL 51
Query: 82 QGLSLQQRIDIRNYILNYLAT 102
L +++ IRN +LN L +
Sbjct: 52 S-LPPEEKEQIRNNLLNLLGS 71
>gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional.
Length = 387
Score = 31.9 bits (73), Expect = 1.1
Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 260 TSWR------PAFLDPNTLKLFFNLYHSLPSTLSHLALACL----VQIASVRRSLFSNAE 309
T WR P P KL NLY S + H ALAC + I RR+ F A
Sbjct: 239 TGWRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEF--AR 296
Query: 310 RARFL 314
R FL
Sbjct: 297 RRDFL 301
>gnl|CDD|216902 pfam02146, SIR2, Sir2 family. This region is characteristic of
Silent information regulator 2 (Sir2) proteins, or
sirtuins. These are protein deacetylases that depend on
nicotine adenine dinucleotide (NAD). They are found in
many subcellular locations, including the nucleus,
cytoplasm and mitochondria. Eukaryotic forms play in
important role in the regulation of transcriptional
repression. Moreover, they are involved in microtubule
organisation and DNA damage repair processes.
Length = 177
Score = 31.0 bits (71), Expect = 1.3
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 380 WQFAPNSVHYLLSLWQRM 397
PN HY ++ +
Sbjct: 55 GPAQPNPAHYFIAELEDK 72
>gnl|CDD|219218 pfam06888, Put_Phosphatase, Putative Phosphatase. This family
contains a number of putative eukaryotic acid
phosphatases. Some family members represent the products
of the PSI14 phosphatase family in Lycopersicon
esculentum (Tomato).
Length = 234
Score = 29.3 bits (66), Expect = 5.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 237 LTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLY 279
+ FDF T D SD+ ++PT+ L P K F+N
Sbjct: 3 VVFDFDKTIIDVDSDNWVVDELPTTQLFEQLRPTMPKGFWNEL 45
>gnl|CDD|218137 pfam04541, Herpes_U34, Herpesvirus virion protein U34. The virion
proteins in this family include membrane
phosphoprotein-like proteins such as UL34, Epstein-Barr
and R50, from dsDNA viruses, no RNA stage,
Herpesvirales. The family Herpes_BFRF1, pfam05900, has
been merged in.
Length = 207
Score = 29.1 bits (66), Expect = 5.8
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 337 YHEFCRLLARLKSNYQLGELVMVDNYSEAIQLIAKFTVESLQMWQFAPNSVH---YLLSL 393
E C L+ R+ +G + V++ + + +K + + Q + + Y+L L
Sbjct: 7 VDELCGLIQRILL--VVGGDLRVEDCDAGLHVFSKGPLPPRCVVQLSHGQAYPLEYVLRL 64
Query: 394 WQRMVASVPYIK 405
W + PY
Sbjct: 65 WAHKLECSPYFV 76
>gnl|CDD|153357 cd07673, F-BAR_FCHO2, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of FCH domain Only 2
protein. F-BAR domains are dimerization modules that
bind and bend membranes and are found in proteins
involved in membrane dynamics and actin reorganization.
The specific function of FCH domain Only 2 (FCHO2) is
still unknown. It contains an N-terminal F-BAR domain
and a C-terminal domain of unknown function named SAFF
which is also present in FCHO1 and endophilin
interacting protein 1. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
Length = 269
Score = 28.9 bits (64), Expect = 7.4
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 147 LQGSVEHCIIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYRDIQLF----DIFRLS 202
L +++H I + LS E I EA +RS+TK K AS+Y + F D+F+ S
Sbjct: 17 LYHNMKHGQISTKELSDFIRERATIEEA-YSRSMTKLAKSASNYSQLGTFAPVWDVFKTS 75
Query: 203 CSLLSN 208
L+N
Sbjct: 76 TEKLAN 81
>gnl|CDD|238910 cd01935, Ntn_CGH_like, Choloylglycine hydrolase (CGH)_like. This
family of choloylglycine hydrolase-like proteins
includes conjugated bile acid hydrolase (CBAH),
penicillin V acylase (PVA), acid ceramidase (AC), and
N-acylethanolamine-hydrolyzing acid amidase (NAAA) which
cleave non-peptide carbon-nitrogen bonds in bile salt
constituents. These enzymes have an N-terminal
nucleophilic cysteine, as do other members of the Ntn
hydrolase family to which they belong. This
nucleophilic cysteine is exposed by post-translational
prossessing of the precursor protein.
Length = 229
Score = 28.5 bits (64), Expect = 9.0
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 326 QNPQGLSDANNY----HEFCRLLARLKSNYQLGELV-----MVDNYSEAIQLIAKFTVES 376
N +GLS + Y + + K EL+ D+ E + + K +
Sbjct: 68 MNEKGLSVSLLYFPGYAYYPAGIKEGKDGLPAFELIRWVLENCDSVEEVKEALKKIPIVD 127
Query: 377 LQMWQFAPNS-VHYLLS 392
+ P + +HY+LS
Sbjct: 128 FPIPLGGPAAPLHYILS 144
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.392
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,934,238
Number of extensions: 3225207
Number of successful extensions: 2454
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2453
Number of HSP's successfully gapped: 19
Length of query: 660
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 557
Effective length of database: 6,369,140
Effective search space: 3547610980
Effective search space used: 3547610980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.6 bits)