RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy46
(660 letters)
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 115 bits (287), Expect = 1e-26
Identities = 85/610 (13%), Positives = 203/610 (33%), Gaps = 83/610 (13%)
Query: 2 VRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTL 61
+ L+ + Y+ + + +A++ L FQ+ PD K +L + ++ IA + L
Sbjct: 15 IALLDQVVSTFYQGSGVQ-QKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSIL 73
Query: 62 TKLISRPAQGLSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKL--PNFVIQALVTLFA 119
KLI+R + L RI I R + I++ +I
Sbjct: 74 DKLITRKWKLLPNDHRIGI--------RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125
Query: 120 RITKLGWFDSEKDEFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAARS 179
+I K W + + I ++ SV C + +L L+ E+ S ++
Sbjct: 126 QILKQEWPQN------WPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQA 179
Query: 180 LTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCLTF 239
H K + S + IF+L +L + +
Sbjct: 180 KALHLKNSMSK---EFEQIFKLCFQVLEQGSSSSLIVAT--------------------- 215
Query: 240 DFIGTATDESSDDLCTVQIPTSWRP--AFLDPNTLKLFFNLYHSLPSTLSHLALACLVQI 297
L ++ W P + N L+L + + P + L CL ++
Sbjct: 216 -------------LESLLRYLHWIPYRYIYETNILELLSTKFMTSP-DTRAITLKCLTEV 261
Query: 298 ASVRRSLFSNAERARFLTQLVNGVKQILQNPQGLSD---------ANNYHEFCRLLARLK 348
++++ ++ + + + N ++QI + ++ N F + LA
Sbjct: 262 SNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFL 321
Query: 349 SNYQLGELVMVDNYSEAIQLIAKFTVESLQMWQFAPNSVHYLLSLWQRMVASVPYIKAME 408
+ Y ++++ +L+ +Q+ + + + + + + + ++
Sbjct: 322 TTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLK 381
Query: 409 PHQLHTYTPEVTSAYITSRLDSVAVVIRDNLEDPLDDLGMVSQQLEQLSAIGRCEYQKTC 468
H ++ I + + V++ +N D+ +V + +++ I + ++
Sbjct: 382 KHIYEEICSQLRLVIIENMVRPEEVLVVEN-----DEGEIVREFVKESDTIQLYKSEREV 436
Query: 469 SLLVQLFDQSARLYQELISTPSPNQIDIAIQEGRLTWLVYIIGAAVGGRVSFNSNEDHDA 528
L +++ I +W + G +S +ED
Sbjct: 437 ------LVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSED--- 487
Query: 529 MDGELLVCRVLQLMNLTDPRLLGPGPGCEKLELAMLSFFEQFRKIYVGDQVQKNSKVYRR 588
+ +V + L++LT + + ++ Q+ + ++ V +
Sbjct: 488 TEKRFVVTVIKDLLDLTVKKR--GKDNKAVVASDIMYVVGQYPR-FLKAHWNFLRTVILK 544
Query: 589 LNEVLGLCDE 598
L E + E
Sbjct: 545 LFEFMHETHE 554
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family,
nucleus, phosphoprotein, protein transport; HET: GTP;
2.92A {Homo sapiens}
Length = 1204
Score = 98.6 bits (244), Expect = 2e-21
Identities = 68/563 (12%), Positives = 153/563 (27%), Gaps = 61/563 (10%)
Query: 5 LECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQL-LLDRGDSSYAQAIAANTLTK 63
++ + + ++ R+EA K F+ C L L ++ + + L
Sbjct: 14 VKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEH 73
Query: 64 LISRPAQGLSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITK 123
++ G+S +++ + + + I N + N + AL + + K
Sbjct: 74 VVKFRWNGMSRLEKVYL--------KNSVMELIANGTLNILEEENHIKDALSRIVVEMIK 125
Query: 124 LGWFDSEKDEFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAARSLTKH 183
W + +++ ++ + + + IL +L ++ R
Sbjct: 126 REWPQH------WPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQ 179
Query: 184 RKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCLTFDFIG 243
+ + + IF + L + + + + + L
Sbjct: 180 QTLTQ-----NMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALN----- 229
Query: 244 TATDESSDDLCTVQIPTSWRP--AFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVR 301
T+ W N L L A CL+ S +
Sbjct: 230 -----------TLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRK 278
Query: 302 RSLFSNAERARFLTQ-LVNGVKQILQNPQGLSDANNYHEFCRLLARLKSNY--QLGELVM 358
L ++ + Q G ++ F + L ++ QL L+
Sbjct: 279 GKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLG 338
Query: 359 VDNYSEAIQLIAKFTVESLQMWQFAPNSVHYL-LSLWQRMVAS-----VPYIKAMEPHQL 412
D+ E K+ L + W + P + A+ P L
Sbjct: 339 ADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYL 398
Query: 413 HTYTPEVTSAYITSRLDSVAVVIRDNLEDPLDDLGMVSQQL-----EQLSAIGRCEYQKT 467
+ S+ DS + D +D E + R + + +
Sbjct: 399 RASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTS 458
Query: 468 CSLLVQLFDQSARLYQELISTPSP-------NQIDIAIQEGRLTW--LVYIIGAAVGGRV 518
+ + + + S S + + W + + + +
Sbjct: 459 FQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMF 518
Query: 519 SFNSNEDHDAMDGELLVCRVLQL 541
+ E+ DG L+ VL
Sbjct: 519 RTLNREEIPVNDGIELLQMVLNF 541
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 92.3 bits (228), Expect = 2e-19
Identities = 69/472 (14%), Positives = 146/472 (30%), Gaps = 76/472 (16%)
Query: 2 VRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTL 61
+ L+ + LY +G + A++ L + + PD + +L+ + + L
Sbjct: 27 INLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQIL 85
Query: 62 TKLISRPAQGLSLQQRIDIPQGLSLQQRIDIRNYILNYLA------TRPKLPNFVIQALV 115
+I + L Q I+ Y++ + T + I L
Sbjct: 86 ENVIKTRW------------KILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLN 133
Query: 116 TLFARITKLGWFDSEKDEFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEAD 175
+ +I K W + I D+ + S C + IL L+ E+ S
Sbjct: 134 MILVQILKQEWPKH------WPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQ 187
Query: 176 AARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQN 235
+ KH K + Q+F + + ++ TLE
Sbjct: 188 ITQVKAKHLKDSMCNEFSQIFQL--CQFVMENSQNAPLVHATLE---------------- 229
Query: 236 CLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLP-STLSHLALACL 294
T+ +W P T + +Y L +++L CL
Sbjct: 230 -------------------TLLRFLNWIPLGYIFETKLISTLIYKFLNVPMFRNVSLKCL 270
Query: 295 VQIASVRRSLFSNAERARFLTQLVNGVKQILQNPQGLSDANN-----YHEFCRLLARLKS 349
+IA V S + F ++ +KQ+L + A + F + L+
Sbjct: 271 TEIAGVSVSQYEEQFETLFTLTMMQ-LKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLC 329
Query: 350 NYQLGELVMVDNYSEAIQLIAKFTVESLQMWQFAPNSVH-----YLLSLWQRMVASVPYI 404
+ +++ + + + L + + + Y L + P+
Sbjct: 330 TFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFS 389
Query: 405 KAMEPHQLHTYTPEVTS--AYITSRLDSVAVVIRDNLEDPLDDLGMVSQQLE 454
+ P + ++ + L V +++ + P + L + + Q E
Sbjct: 390 TSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGE 441
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 78.2 bits (192), Expect = 6e-15
Identities = 88/603 (14%), Positives = 178/603 (29%), Gaps = 202/603 (33%)
Query: 66 SRP---AQGLSLQQRIDIPQGL--SLQQRIDIRNYILNYLATRPKLPNFVIQ-----ALV 115
+RP + G SL+ + +P Q + + P+
Sbjct: 6 TRPLTLSHG-SLEHVLLVPTASFFIASQLQE------QFNKILPEPTEGFAADDEPTTPA 58
Query: 116 TLFARITKLGWFDSEKDE-------FVFRNVIQD-VSNFLQGSVEHCIIGVQILSQLTGE 167
L + LG+ S + V + + + +L+G+ H + ++L E
Sbjct: 59 ELVGKF--LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA-----AKLLQE 111
Query: 168 MNQISEADAARSLTKHRKIASSY---RDIQLFDIFRLSCSLLSNA--QENCKTMTLEGEG 222
+ +L K +++ +Y R + + S S L A + N + + + G G
Sbjct: 112 NDT--------TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-G 162
Query: 223 QIFMTQLLGLAQNCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSL 282
Q G + +E L+ + YH L
Sbjct: 163 Q-------GNTDDYF---------EE-----------------------LRDLYQTYHVL 183
Query: 283 PSTLSHLALACLVQIASVRRSLFSNAERARFLTQLVNGVKQILQNPQ------------- 329
L + L ++ + + + TQ +N + + L+NP
Sbjct: 184 VGDLIKFSAETLSELIR------TTLDAEKVFTQGLN-ILEWLENPSNTPDKDYLLSIPI 236
Query: 330 -----GLSDANNYHEFCRLLARLKSNYQLGELVM----VDNYSEAIQLIAKFTVESLQMW 380
G+ +Y +LL + GEL +S+ + + A E+ W
Sbjct: 237 SCPLIGVIQLAHYVVTAKLL-----GFTPGELRSYLKGATGHSQGL-VTAVAIAET-DSW 289
Query: 381 Q-FAPNSVHYL----------------LSLWQRMVAS-------VP----YIKAMEPHQL 412
+ F + + SL ++ VP I + Q+
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 413 HTYTPEVTSAYI-TSRLDSVAVVI-RDN--LEDPLDDLGMVSQQLEQLSAIGRCEYQKTC 468
Y T++++ + +++V N + P L ++ L + A
Sbjct: 350 QDYV-NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL------ 402
Query: 469 SLLVQLFDQSARLYQE---------L-ISTP--SP------NQIDIAIQEGRLTWLVYII 510
DQS + E L +++P S + I+ + + +++ I
Sbjct: 403 -------DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 511 GAAVGGRVSFNSNEDHDAMDGELL--VCRVL--------QLMNLTDPRLL--GPG--PGC 556
V D + G + + + +L GPG G
Sbjct: 456 QIPV---YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512
Query: 557 EKL 559
L
Sbjct: 513 GVL 515
Score = 75.5 bits (185), Expect = 3e-14
Identities = 68/394 (17%), Positives = 128/394 (32%), Gaps = 121/394 (30%)
Query: 280 HSL-PSTLSHLALACLVQIASVRRSLFSNAE--RARFLTQLVNGVKQILQNPQGLSDANN 336
+S P TLSH +L ++ + + + F A + +F L + + + + A
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPT---ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 337 YHEFCRLLARLKSNYQLGELVMVDNYSEAIQL-IAKFTVESLQMWQFAPNSVHYLL-SLW 394
+F ++ L ++G+ + + + L + +F L+ N +H L L
Sbjct: 61 VGKFLGYVSSLVEPSKVGQ------FDQVLNLCLTEFENCYLE-----GNDIHALAAKLL 109
Query: 395 QRMVASVP--------YIKAMEPHQLHTYTPEVTSAYITSRLDSVAVVI-----RDNLED 441
Q ++ YI A + + SA + + A ++ + N +D
Sbjct: 110 QENDTTLVKTKELIKNYITARI-MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 442 PLDDLGMVSQQLEQLSAIGRCEYQKTCSLLVQLFDQSARLYQELISTPS------PNQID 495
++L + L YQ L+ L SA ELI T ++
Sbjct: 169 YFEEL----RDL----------YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 496 IAIQEGRLTWLV---------YIIGAAVGGRVSFNSNEDHDAMDGELLVCRVLQLMN-LT 545
I L WL Y++ +S L+ V+QL + +
Sbjct: 215 I------LEWLENPSNTPDKDYLLSIP----ISCP------------LIG-VIQLAHYVV 251
Query: 546 DPRLLGPGPGCEKLELAMLSFFEQFRKIYVGDQVQKNSKVYRRLNEVLGLCDEATVLSVF 605
+LLG PG + R G G + V +V
Sbjct: 252 TAKLLGFTPG-------------ELRSYLKG---------------ATG-HSQGLVTAVA 282
Query: 606 VRKIITNLKYWGRSEQIITKTLQLLNDLSVGYSC 639
+ + + W + K + +L +G C
Sbjct: 283 IAETDS----WESFFVSVRKAITVL--FFIGVRC 310
Score = 40.8 bits (95), Expect = 0.002
Identities = 48/284 (16%), Positives = 95/284 (33%), Gaps = 85/284 (29%)
Query: 298 ASVRRSLFSNAERARFLTQLVNG---VKQILQNPQGLSDANNYHEFCRLLARLKSNYQ-- 352
+ + ++ RA + G + ++ NP L+ H R++ NY
Sbjct: 1639 SKAAQDVW---NRADNHFKDTYGFSILDIVINNPVNLT----IHFGGEKGKRIRENYSAM 1691
Query: 353 LGELVMVDNYSEAIQLIAKFTVESLQ-MWQFAPNSVHYLLSLWQR-----MVASVPYIKA 406
+ E +VD + ++ + S ++ + LLS Q + +
Sbjct: 1692 IFE-TIVDGKLKTEKIFKEINEHSTSYTFR-SEKG---LLSATQFTQPALTLMEKAAFED 1746
Query: 407 MEPHQL---------HT---YTPEVTSAYITSRLDSVAVVIRDNLEDPLDDL----GMVS 450
++ L H+ Y +A L S+A V+ ++E ++ + GM
Sbjct: 1747 LKSKGLIPADATFAGHSLGEY-----AA-----LASLADVM--SIESLVE-VVFYRGMTM 1793
Query: 451 QQLEQLSAIGRCEYQKTCSLLVQLFDQSARLYQELISTPSPNQIDIAIQEGRLTWLVYII 510
Q +GR Y + +P ++ + + L ++V +
Sbjct: 1794 QVAVPRDELGRSNYG--------------------MIAINPGRVAASFSQEALQYVVERV 1833
Query: 511 GAAVGGRVS---FNS-NE------DHDAMDGELLVCRVLQLMNL 544
G G V +N N+ D A+D V VL + L
Sbjct: 1834 GKRTGWLVEIVNYNVENQQYVAAGDLRALD---TVTNVLNFIKL 1874
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A
{Homo sapiens} PDB: 2xwu_B
Length = 963
Score = 75.0 bits (183), Expect = 4e-14
Identities = 61/491 (12%), Positives = 133/491 (27%), Gaps = 60/491 (12%)
Query: 1 EVRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANT 60
V +E QLY + + A+K L+ Q +P LL Q A+
Sbjct: 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASA 81
Query: 61 LTKLISRPAQGLSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFAR 120
L ISR + Q ++ + + V+ L A
Sbjct: 82 LHIKISRY------------WSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALAS 129
Query: 121 ITKLGWFDSEKDEFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAARSL 180
+ D+ + + D+ Q + L+ L E +R
Sbjct: 130 LALSMMPDA------WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLP 183
Query: 181 TKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCLTFD 240
+ + + ++ +F L LL + + C +
Sbjct: 184 QYRKGLVRTSLAVECGAVFPLLEQLLQQPSSP--------------SCVRQKVLKCFSSW 229
Query: 241 FIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASV 300
+ + L ++ F S L ++ +V S
Sbjct: 230 VQLEVPLQDCEAL------------------IQAAFAALQD--SELFDSSVEAIVNAIS- 268
Query: 301 RRSLFSNAERARFLTQLVNGVKQILQNPQGLSDANNYHEFCRLLARLKSNYQLGELVMVD 360
+ L LV G+++ L+ D H CR+ L N+ L V+
Sbjct: 269 QPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVE 328
Query: 361 NYSEAIQLI------AKFTVESLQMWQFAPNSVHYLLSLWQRMVASVPYIKAMEPHQLHT 414
++ + L+ + ++ + +L +++ +A+
Sbjct: 329 HWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRP 388
Query: 415 YTPEVTSAYIT-SRLDSVAVVIRDNLEDPLDDLGMVSQQLEQLSAIGRCEYQKTCSLLVQ 473
++ + ++ S + ++ + L + + S L
Sbjct: 389 VYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYD 448
Query: 474 LFDQSARLYQE 484
+ +E
Sbjct: 449 KLGRLLTSSEE 459
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing,
nuclear transport, mRNA splicing, mRNA transport; 3.35A
{Drosophila melanogaster}
Length = 971
Score = 63.5 bits (153), Expect = 1e-10
Identities = 35/353 (9%), Positives = 91/353 (25%), Gaps = 32/353 (9%)
Query: 1 EVRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANT 60
++ +LE Y ++ + + L + + +P L+ G S Q A T
Sbjct: 5 DIARLEEAVVSFY-RSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAIT 63
Query: 61 LTKLISRPAQGLSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFAR 120
L + + + + R +++ IL + P V+ L
Sbjct: 64 LHSKLMKH------------WHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGA 111
Query: 121 ITKLGWFDSEKDEFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAARSL 180
+ + I++V N Q + L + + I E
Sbjct: 112 YIVHMLGE-------WPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHT 164
Query: 181 TKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCLTFD 240
+ R + + ++ + + + + E M + + +
Sbjct: 165 SVKRVVLRAEIAKRVQLVIH----TVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNI 220
Query: 241 FIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASV 300
+ + T+ + + + L+ L +V I
Sbjct: 221 GY------TIEGCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQ 274
Query: 301 RRSLFSNAERARFLTQLVNGVKQILQNPQGLSDA--NNYHEFCRLLARLKSNY 351
+ ++ + +I + + + L +
Sbjct: 275 PDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERH 327
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 3e-09
Identities = 70/412 (16%), Positives = 119/412 (28%), Gaps = 126/412 (30%)
Query: 2 VRQLECLCKQL------YESADGNLRV---EAEKALVNFQNAPDTLAKCQLLLDRGDSSY 52
+ L+ L Q+ N+++ + L + C L+L +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YENCLLVLL--NVQN 255
Query: 53 AQAIAA-----NTLTKLISRPAQ---GLSLQQRIDIP-----QGLSLQQRIDIRNYILNY 99
A+A A L L +R Q LS I L+ + + +L Y
Sbjct: 256 AKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL---LLKY 310
Query: 100 LATRP-KLPNFVIQA---LVTLFARITKLG------WFDSEKDEFVFRNVIQDVSNFL-- 147
L RP LP V+ +++ A + G W D+ +I+ N L
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL--TTIIESSLNVLEP 368
Query: 148 ---QGSVEHCII---GVQI----LSQL-----TGEMNQISEADAARSL------------ 180
+ + + I LS + ++ + SL
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 181 ---------------TKHRKIASSYRDIQLFDIFRLSCSL------------LSNAQENC 213
HR I Y + FD L L N +
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE--- 485
Query: 214 KTMTLEGEGQIFMTQLLGLAQNCLTFDFI-------GTATDESSDDLCTVQIPTSWRPAF 266
E + L F F+ TA + S L T+Q ++P
Sbjct: 486 -----HPERMTLFRMVF------LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 267 LD--PNTLKLFFNLYHSLPSTLSHLALA---CLVQIA--SVRRSLFSNAERA 311
D P +L + LP +L + L++IA + ++F A +
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 57.9 bits (139), Expect = 9e-09
Identities = 102/719 (14%), Positives = 211/719 (29%), Gaps = 239/719 (33%)
Query: 2 VRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANTL 61
V +C + D + +++ + + + D ++ L
Sbjct: 30 VDNFDC-----KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW--------------- 69
Query: 62 TKLISRPAQGLSLQQRIDIPQGLSLQQRIDIRNY--ILNYLATRPKLPNFVIQALVTLFA 119
L+S+ + + Q+ ++ L+ NY +++ + T + P +
Sbjct: 70 -TLLSKQEEMV--QKFVEE----VLRI-----NYKFLMSPIKTEQRQP-----------S 106
Query: 120 RITKLGWFDSEKDEFVFRNVIQDVSNFLQGSV--EHCIIGVQI-LSQLTGEMN------- 169
+T++ + ++D + D F + +V + ++ L +L N
Sbjct: 107 MMTRM--YIEQRD-----RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 170 ----QISEADAARSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIF 225
D S K+ F IF L+ NC + E +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMD--------FKIFWLNLK-------NCNSP----ETVLE 200
Query: 226 MTQLLGLAQNCLTFDFIGTATDESSDDLCTVQIPTSWRPAFLD--------PNTLKLFFN 277
M Q L D T SD +++ A L N L + N
Sbjct: 201 MLQKL-----LYQIDPNWT---SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 278 LYHSLPSTLSHLALACLVQIASVRRSLF--SNAERARFLTQLVNGVKQILQNPQGLSDAN 335
+ + + L+C + L + FL+ + + L+
Sbjct: 253 VQN--AKAWNAFNLSC--------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD- 301
Query: 336 NYHEFCRLLAR-LKSNYQLGEL--VMVDNYSEAIQLIAKFTVESLQMWQFAPNSVHYLLS 392
E LL + L Q +L ++ + +IA+ + L W N H
Sbjct: 302 ---EVKSLLLKYLDCRPQ--DLPREVLTTNPRRLSIIAESIRDGLATWD---NWKHVNCD 353
Query: 393 LWQRMVASVPYIKAMEPHQL-HTYT-----PEVTSAYITSRLDSVAVVIRDNLEDPLDDL 446
++ S + +EP + + P SA+I + + +I ++ D+
Sbjct: 354 KLTTIIES--SLNVLEPAEYRKMFDRLSVFPP--SAHIPT---ILLSLIWFDVIK--SDV 404
Query: 447 GMVSQQLEQLSAIGRCEYQKTCSL------LVQLFDQSARLYQELI-----------STP 489
+V +L + S + + + T S+ L + L++ ++
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 490 SPNQIDIAIQEGRLTWLVYI---IGAAVGGRVSFNSNEDHDAMDGELLVCRVLQLMNLTD 546
P +D Y IG H L N
Sbjct: 465 IPPYLD-----------QYFYSHIG-------------HH--------------LKN--- 483
Query: 547 PRLLGPGPGCEKLELAMLSFFEQFRKIYVGDQVQKNSKVYRRLNEVLGLCDEATVLSVFV 606
E E FR +++ D +R L + + A S +
Sbjct: 484 ---------IEHPER-----MTLFRMVFL-D--------FRFLEQKIRHDSTAWNASGSI 520
Query: 607 RKIITNLKYWGRSEQIITKTL----QLLNDL-----SVGYSCVRKLVK-LDEVQFMLNN 655
+ LK++ + I +L+N + + + + K D ++ L
Sbjct: 521 LNTLQQLKFY---KPYICDNDPKYERLVNAILDFLPKIEENLICS--KYTDLLRIALMA 574
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA-
binding, transport, tRNA processing, tRNA-binding, RNA
binding protein; 3.10A {Schizosaccharomyces pombe} PDB:
3icq_T*
Length = 980
Score = 53.7 bits (128), Expect = 2e-07
Identities = 59/532 (11%), Positives = 140/532 (26%), Gaps = 78/532 (14%)
Query: 12 LYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQA--IAANTLTKLISRPA 69
L S ++ +A + + +++ C + I TL++ +
Sbjct: 16 LDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWN 75
Query: 70 QGLSLQQRIDIPQGLSLQQRIDIRNYILNYLA--TRPKLPNFVIQALVTLFARITKLGWF 127
+L + IR+ + +Y+ + P ++ A+ L + +
Sbjct: 76 ------------NESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP 123
Query: 128 DSEKDEFVFRNVIQDVSNFLQG--SVEHCIIGVQILSQLTGEMNQISEADAARSLTKHRK 185
+ + + + + E +++L + E+ + K
Sbjct: 124 SN------WNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNL 177
Query: 186 IASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCLTFDFIGTA 245
+ + R + DI ++ + G CL
Sbjct: 178 VKDAIRANDMSDIVSFVYEMMLAYSN---------------AKNYGTVGLCLQ------- 215
Query: 246 TDESSDDLCTVQIPTSWRP--AFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRS 303
SW ++ + L ++ L A + +I + +
Sbjct: 216 ---------VYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMK 264
Query: 304 LFSNAERARFLTQLVNGVKQILQNPQGLSDANNYHEFCRLL--------ARLKSNYQLGE 355
L ++N ++ + +D N +L+ A +L
Sbjct: 265 PLEKLN----LLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSP 320
Query: 356 LVMVDNYSEAIQLIAKFTVESLQMWQFAPNSVHYLLSLWQRMVASVPYIKAMEPHQLHTY 415
+ + + L + +V LS + K +
Sbjct: 321 ELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFL 380
Query: 416 TPEVTSAYITSRLD-SVAVVIRDNLEDPLDDLGMVSQQLEQLSAIGRCEYQKTCSLLVQL 474
+ + + D S + E+ + M + I + S +
Sbjct: 381 KSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSA 440
Query: 475 FDQSARLYQELISTPSPNQIDIAIQEGRLTWLVYIIGAAVGGRVSFNSNEDH 526
S L S I+ A+ + YI G + G +F + D
Sbjct: 441 ITSSLSTAATLSPENSWQLIEFAL------YETYIFGEGLRGPDAFFNEVDK 486
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 42.9 bits (100), Expect = 4e-04
Identities = 43/315 (13%), Positives = 94/315 (29%), Gaps = 21/315 (6%)
Query: 4 QLECLCKQLYESADGNLRVEAEKALVNF--QNAPDTL-AKCQLLLDRGDSSYAQAIAANT 60
+ L + S D N+R+ +E L N Q+L+D + +AA T
Sbjct: 5 EFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALT 64
Query: 61 LTKLISRPAQGLSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFAR 120
L + + Q +S + + I+ L L + + A L A
Sbjct: 65 LKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPR---IANAAAQLIAA 121
Query: 121 ITKLGWFDSEKDEFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAARSL 180
I + E + ++ + + + L + + S+A + S
Sbjct: 122 IADIELPHGAWPEL-MKIMVDNTGA--EQPENVKRASLLALGYMCESADPQSQALVSSSN 178
Query: 181 TKHRKIASSYR-DIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCLTF 239
I + + + + L+++ K + ++ Q++ A
Sbjct: 179 NILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDI 238
Query: 240 DFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYH----SLPSTLSHLALACLV 295
+ A C +I S F+ P + + L S ++ + +
Sbjct: 239 EVQAAAFG------CLCKI-MSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWS 291
Query: 296 QIASVRRSLFSNAER 310
I + +
Sbjct: 292 TICEEEIDIAYELAQ 306
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 38.7 bits (89), Expect = 0.007
Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Query: 15 SADGNLRVEAEKALVNF--QNAPDTLAK-CQLLLDRGDSSYAQAIAANTLTKLISRPAQG 71
S D A+K L +N P L + ++L + G+S A+ A + ++
Sbjct: 12 SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71
Query: 72 LSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFA 119
+ Q + + R +++NY+L+ L T P+ Q + +
Sbjct: 72 IKAQYQQRWLA-IDANARREVKNYVLHTLGTETYRPSSASQCVAGIAC 118
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 37.9 bits (87), Expect = 0.009
Identities = 42/304 (13%), Positives = 97/304 (31%), Gaps = 22/304 (7%)
Query: 15 SADGNLRVEAEKALVNF--QNAPDTLAK-CQLLLDRGDSSYAQAIAANTLTKLISRPAQG 71
S D A+K L +N P L + ++L + G+S A+ A + ++
Sbjct: 12 SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71
Query: 72 LSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEK 131
+ Q + + R +++NY+L L T + + A I ++
Sbjct: 72 IKAQYQQRWLA-IDANARREVKNYVLQTLGT----ETYRPSSASQCVAGIACAEIPVNQW 126
Query: 132 DEFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYR 191
E + + + ++ + + +++ D + + I +
Sbjct: 127 PELI--PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI-LTAIIQGMRK 183
Query: 192 DIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCLTFDFIGTATDESSD 251
+ ++ + + L N+ E K + + F+ Q++ A C A
Sbjct: 184 EEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ---- 239
Query: 252 DLCTVQIPTSWRPAFLDPNTLKLFFNLYH----SLPSTLSHLALACLVQIASVRRSLFSN 307
V+I S +++ F + S ++ + + L
Sbjct: 240 --NLVKI-MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 296
Query: 308 AERA 311
A A
Sbjct: 297 ASEA 300
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 35.5 bits (81), Expect = 0.060
Identities = 39/322 (12%), Positives = 90/322 (27%), Gaps = 46/322 (14%)
Query: 15 SADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQ--AIAANTLTKLISRPAQGL 72
S D ++ ++ L PD +L + S +++ L +
Sbjct: 24 SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKA----- 78
Query: 73 SLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEKD 132
Q I++ LN + L + L+T A +L +
Sbjct: 79 -------HFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWP---- 127
Query: 133 EFVFRNVIQD-VSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYR 191
+++ S C L ++ + +I + S
Sbjct: 128 -----DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI--------------LDSDVL 168
Query: 192 DIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCLTF--DFIGTATDES 249
D L + ++ ++ + Q +++ L + +F + A DE
Sbjct: 169 DRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEE 228
Query: 250 SDDL-----CTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSL 304
+ V + R L P+ + + ++AL ++
Sbjct: 229 PEVRKNVCRALVML-LEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP 287
Query: 305 FSNAERARFLTQLVNGVKQILQ 326
R L +L+ + ++
Sbjct: 288 ICKDVLVRHLPKLIPVLVNGMK 309
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.095
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 13/38 (34%)
Query: 404 IKAMEPHQLHTYTPEVTSAYITSRLDSV-AVVIRDNLE 440
+K ++ L Y DS A+ I+ +E
Sbjct: 22 LKKLQ-ASLKLYAD-----------DSAPALAIKATME 47
Score = 32.6 bits (73), Expect = 0.17
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 16/43 (37%)
Query: 367 QLIAKFTVESLQMWQFAPNSVHYLLSLWQRMVASVPYIKA-ME 408
Q + K SL++ +A +S L A IKA ME
Sbjct: 20 QALKKLQ-ASLKL--YADDSAPAL--------A----IKATME 47
Score = 29.9 bits (66), Expect = 1.3
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 35/61 (57%)
Query: 1 EVRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLLDRGDSSYAQAIAANT 60
+++L+ K LY A D S+ A AI A T
Sbjct: 21 ALKKLQASLK-LY--------------------ADD-------------SAPALAIKA-T 45
Query: 61 L 61
+
Sbjct: 46 M 46
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.2 bits (73), Expect = 0.65
Identities = 43/253 (16%), Positives = 79/253 (31%), Gaps = 76/253 (30%)
Query: 362 YSEA----IQLIAKFTVESLQMWQFAPNSVHYLLSL------WQR----MVASVPYIKAM 407
YSE+ L ++ ES W + L ++ W R M A+ + +
Sbjct: 640 YSESKLSLETLFNRWHSES---WA------NQL-TVCGAIIGWTRGTGLMSANNIIAEGI 689
Query: 408 EPHQLHTYTPEVTSAYITSRLDSVAVVIRDNLEDPLD-DL--GMVSQQ-LEQLSAIGRCE 463
E + T++ + + + L V + + P+ DL G+ L++ +A R E
Sbjct: 690 EKMGVRTFSQKEMAFNLLGLLTPEVVEL--CQKSPVMADLNGGLQFVPELKEFTAKLRKE 747
Query: 464 YQKTCSLLVQLFDQSAR------------LYQELISTPSPN-------------QIDIAI 498
+T + + ++A Y ++ P N IA
Sbjct: 748 LVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQLDFPELKPYKQVKQIAP 807
Query: 499 QEGRLTW----LVYIIGAA-VG--GRVSFNSNEDHDAM--DGELLVCRVLQL---MNL-- 544
E ++ + G A VG G M GE + +++ M
Sbjct: 808 AELEGLLDLERVIVVTGFAEVGPWGSART-----RWEMEAFGEFSLEGCVEMAWIMGFIS 862
Query: 545 --TDPRLLGPGPG 555
P G
Sbjct: 863 YHNGNLKGRPYTG 875
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A
family, amino-acid biosynthesis, metallopeptidase; 1.90A
{Rhodopseudomonas palustris}
Length = 433
Score = 29.3 bits (66), Expect = 4.4
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 447 GMVSQQLEQLSAIGRCEYQKTCSLLVQLFDQSARLYQELISTPSPNQIDIAIQE 500
GM ++ L + AI Q + + + F+ Q ++ S + QE
Sbjct: 1 GMATETLTKSDAI----TQSLRAAVDRNFNDQVAFLQRMVQFRSVRGEEAPQQE 50
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric
regulation, ACT domain, transferase, amino acid
biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP:
c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Length = 449
Score = 28.8 bits (65), Expect = 6.5
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 424 ITSRLDSVAVVIRDNLEDPLDDLGMVSQQLEQLSAIGRCEYQKTCSLL 471
IT+ SVA+ + D + L +LSA+ R E ++ +L+
Sbjct: 342 ITTSEVSVALTLDTTGSTSTGDTLLTQSLLMELSALCRVEVEEGLALV 389
>1f6f_A Placental lactogen; 4-helical bundle, alpha helical bundle, ternary
complex, FN III domains, beta sheet domains,
cytokine-receptor complex; 2.30A {Ovis aries} SCOP:
a.26.1.1
Length = 199
Score = 28.2 bits (62), Expect = 6.9
Identities = 11/72 (15%), Positives = 25/72 (34%)
Query: 439 LEDPLDDLGMVSQQLEQLSAIGRCEYQKTCSLLVQLFDQSARLYQELISTPSPNQIDIAI 498
L+ D V+ +L+ + + + + + I+TP+ I
Sbjct: 18 LQSLFDRATTVANYNSKLAGEMVNRFDEQYGQGINSESKVINCHTSSITTPNSKAEAINT 77
Query: 499 QEGRLTWLVYII 510
++ L LV +
Sbjct: 78 EDKILFKLVISL 89
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate
dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED
ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB:
1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Length = 419
Score = 28.2 bits (62), Expect = 9.1
Identities = 22/155 (14%), Positives = 44/155 (28%), Gaps = 17/155 (10%)
Query: 37 TLAKCQLLLDRGDSSYAQAIAANTLTKLISRPAQGLSLQQRIDIPQGLSLQQR--IDIRN 94
+ + + + LS++Q +D + + ++ + +R
Sbjct: 5 HHHHHGMARLENLYFQGKQPVPKQIERYSRFSPSPLSIKQFLDFGRDNACEKTSYMFLRK 64
Query: 95 YILNYLATRPK----LP---------NFVIQALVTLFARITKLGWFDSEKDEFV--FRNV 139
+ LA + LP V + F + + E + + F V
Sbjct: 65 ELPVRLANTMREVNLLPDNLLNRPSVGLVQSWYMQSFLELLEYENKSPEDPQVLDNFLQV 124
Query: 140 IQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEA 174
+ V N V GV + G IS
Sbjct: 125 LIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTN 159
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.392
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,648,682
Number of extensions: 571072
Number of successful extensions: 913
Number of sequences better than 10.0: 1
Number of HSP's gapped: 898
Number of HSP's successfully gapped: 31
Length of query: 660
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 560
Effective length of database: 3,909,693
Effective search space: 2189428080
Effective search space used: 2189428080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.5 bits)