RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy46
(660 letters)
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 861
Score = 45.2 bits (105), Expect = 2e-05
Identities = 55/461 (11%), Positives = 127/461 (27%), Gaps = 28/461 (6%)
Query: 1 EVRQLECLCKQLYESADGNLRVEAEKALVNFQNAPD---TLAKCQLLLDRGDSSYAQAIA 57
+ L + S D N+R+ +E L N Q+L+D + +A
Sbjct: 2 STAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILA 61
Query: 58 ANTLTKLISRPAQGLSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTL 117
A TL + + Q +S + + I+ L L + + A L
Sbjct: 62 ALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPR---IANAAAQL 118
Query: 118 FARITKLGWFDSEKDEFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAA 177
A I + E + ++ + + + L + + S+A +
Sbjct: 119 IAAIADIELPHGAWPEL-MKIMVDNTGA--EQPENVKRASLLALGYMCESADPQSQALVS 175
Query: 178 RSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCL 237
S I +Q S ++ A + + + +
Sbjct: 176 SSNNILIAI------VQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVV 229
Query: 238 TFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNL----YHSLPSTLSHLALAC 293
+ + + S F+ P + + L S ++ + +
Sbjct: 230 CEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEF 289
Query: 294 LVQIASVRRSL-FSNAERARFLTQLVNGVKQILQNPQGLSDANNYHEFCRLLARLKSNYQ 352
I + + A+ + Q N ++ + LL R + +
Sbjct: 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIK--------DVVPNLLNLLTRQNEDPE 341
Query: 353 LGELVMVDNYSEAIQLIAKFTVESLQMWQFAPNSVHYLLSLWQRMVASVPYIKAMEPHQL 412
+ + + +QL A+ + + W+ A+V ++
Sbjct: 342 DDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD 401
Query: 413 HTYTPEVTSAYITSRLDSVAVVIRDNLEDPLDDLGMVSQQL 453
+ S L+ + E +G ++ +
Sbjct: 402 KVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSV 442
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 39.3 bits (90), Expect = 0.001
Identities = 39/331 (11%), Positives = 92/331 (27%), Gaps = 35/331 (10%)
Query: 2 VRQLECLCKQLYESADGNLRVEAEKALVNFQNAPDTLAKCQLLL--DRGDSSYAQAIAAN 59
++Q+ L K+ S D ++ ++ L PD +L + + ++++
Sbjct: 10 LQQILQLLKESQ-SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGL 68
Query: 60 TLTKLISRPAQGLSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLP-NFVIQALVTLF 118
L + Q I++ LN + L V + T+
Sbjct: 69 ILKNNVKAH------------FQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIA 116
Query: 119 ARITKLGWFDSEKDEFVFRNVIQDVSNFLQ-GSVEHCIIGVQILSQLTGEMNQISEADAA 177
++ W D ++ + + L C L ++ + +I ++D
Sbjct: 117 SKGELQNWPD----------LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVL 166
Query: 178 RSLTKHRKIASSYRDIQLFDIFRLSCSLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCL 237
F+ S + + C + Q M + +N
Sbjct: 167 DRPLNIMIPK-------FLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLF 219
Query: 238 TFDFIGTATDESSDDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQI 297
+ V + R L P+ + + ++AL
Sbjct: 220 ALAGDEEPEVRKNVCRALVMLL-EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFW 278
Query: 298 ASVRRSLFSNAERARFLTQLVNGVKQILQNP 328
++ R L +L+ + ++
Sbjct: 279 LTLAEQPICKDVLVRHLPKLIPVLVNGMKYS 309
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 37.0 bits (84), Expect = 0.007
Identities = 81/634 (12%), Positives = 182/634 (28%), Gaps = 40/634 (6%)
Query: 15 SADGNLRVEAEKALVNF--QNAPDTL-AKCQLLLDRGDSSYAQAIAANTLTKLISRPAQG 71
S D A+K L +N P L ++L + G+S A+ A + ++
Sbjct: 12 SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71
Query: 72 LSLQQRIDIPQGLSLQQRIDIRNYILNYLATRPKLPNFVIQALVTLFARITKLGWFDSEK 131
+ Q + R +++NY+L+ L T + + A I ++
Sbjct: 72 IK-AQYQQRWLAIDANARREVKNYVLHTLGT----ETYRPSSASQCVAGIACAEIPVNQW 126
Query: 132 DEFVFRNVIQDVSNFLQGSVEHCIIGVQILSQLTGEMNQISEADAARSLTKHRKIASSYR 191
E ++ +V+N + ++ + + ++ E +S I R
Sbjct: 127 PEL-IPQLVANVTNP-NSTEHMKESTLEAIGYICQDI--DPEQLQDKSNEILTAIIQGMR 182
Query: 192 DIQLFDIFRLSC-SLLSNAQENCKTMTLEGEGQIFMTQLLGLAQNCLTFDFIGTATDESS 250
+ + +L+ + L N+ E K + + F+ Q++ A C A
Sbjct: 183 KEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ--- 239
Query: 251 DDLCTVQIPTSWRPAFLDPNTLKLFFNLYHSLPSTLSHLALACLVQIASVRRSLFSNAER 310
V+I + + LF ++ S + +AL + ++V A
Sbjct: 240 ---NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 296
Query: 311 ARFLTQLVNGVKQILQNPQGLSDANNYHEFCRLLARLKSNYQLGELVMVDNYSEAIQLIA 370
A + + + + + L + N + + L+A
Sbjct: 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA 356
Query: 371 KFTVESLQMWQFAPNSVHYLLSLWQ----RMVASVPYIKAMEPHQLHTYTPEVTSAYITS 426
+ + H W+ ++A ++ EP QL + I
Sbjct: 357 TCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL 416
Query: 427 RLDSVAVVIRDNLEDPLDDLGMVSQQLEQLSAIGRCEYQKTCSLLVQLFDQSARLYQELI 486
D VV ++ + L++ R+ +
Sbjct: 417 MKDPSVVVRDTAAWTVGRICELLPEAAIN-----DVYLAPLLQCLIEGLSAEPRVASNVC 471
Query: 487 STPSPNQIDIAIQEGRLTWLVYIIGAAVGGRVS------FNSNEDHDAMDGELLVCRVLQ 540
S + + + D L
Sbjct: 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYES 531
Query: 541 LMNLTDPRLLGPGPGCEKLELAMLSFFEQFRKIYVGDQVQKNSKVYRRLNEVLGLCDEAT 600
LM + P +K L ++ +Q ++ Q + + L +L +
Sbjct: 532 LMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNV 591
Query: 601 VLSVFVRKIITNLKYWGRSEQIITKTLQLLNDLS 634
+ V + + S+ ++ L++ +
Sbjct: 592 LRKVQHQDALQI------SDVVMASLLRMFQSTA 619
>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD
{Soybean (Glycine max) [TaxId: 3847]}
Length = 182
Score = 27.3 bits (59), Expect = 5.1
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 336 NYHEFCRLLARLKSNYQLGELVMVD--NYSEAIQLIAKFTVESLQMW 380
+Y EF ++ + K N +G M N +A+ L+ + + ++ +
Sbjct: 134 DYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIEGY 180
>d1e9ya2 d.8.1.1 (A:1-105) Urease, gamma-subunit {Helicobacter
pylori [TaxId: 210]}
Length = 105
Score = 25.7 bits (57), Expect = 7.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 361 NYSEAIQLIAKFTVE 375
NY EA+ LI+ +E
Sbjct: 31 NYVEAVALISAHIME 45
>d1gm6a_ b.60.1.1 (A:) Salivary lipocalin {Pig (Sus scrofa) [TaxId:
9823]}
Length = 158
Score = 26.4 bits (57), Expect = 8.7
Identities = 16/135 (11%), Positives = 37/135 (27%), Gaps = 7/135 (5%)
Query: 332 SDANNYHEFCRLLARLKSNYQLGELVMVDNYSEAIQLIAKFTVESLQMWQFAPNSVHYLL 391
SDA E + + ++ + + + Q Y +
Sbjct: 22 SDAKENIEENGSMRVFVEHIRVLD---NSSLAFKFQRKVNGECTDFYAVCDKVGDGVYTV 78
Query: 392 SLWQRMVASVPYIKAMEPHQLHTYT----PEVTSAYITSRLDSVAVVIRDNLEDPLDDLG 447
+ + + + + LH R V ++D + G
Sbjct: 79 AYYGENKFRLLEVNYSDYVILHLVDVNGDKTFQLMEFYGRKPDVEPKLKDKFVEICQQYG 138
Query: 448 MVSQQLEQLSAIGRC 462
++ + + L+ I RC
Sbjct: 139 IIKENIIDLTKIDRC 153
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.392
Gapped
Lambda K H
0.267 0.0370 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,300,490
Number of extensions: 103339
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 7
Length of query: 660
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 569
Effective length of database: 1,158,166
Effective search space: 658996454
Effective search space used: 658996454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.3 bits)