BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy460
(117 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VQF9|SNAPN_DROME SNAPIN protein homolog OS=Drosophila melanogaster GN=snapin PE=1
SV=1
Length = 134
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 5/114 (4%)
Query: 1 MDEDTVSTNTSADDKTEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQ 60
MD D ST TS ++ TE+FC NPT+D +AEG+ L KPT++ LDE+ +T Q ELR Q
Sbjct: 1 MDSD--STVTSLEENTENFCTNPTRDILAEGITNLFKPTIERLDERVASTIQLQAELRGQ 58
Query: 61 IEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQ---VAMHK 111
++AL +QL I Q ++L++ + K++++ N+L T+Q +HK
Sbjct: 59 LDALAAQLRDIEKAQSQIPEFADKVKELLNVKHKVTVISNVLVTSQERLTGLHK 112
>sp|P60192|SNAPN_RAT SNARE-associated protein Snapin OS=Rattus norvegicus GN=Snapin PE=1
SV=1
Length = 136
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 23 PT-QDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPL 81
PT +D AEGLL ++P V LD A R SQ+ELR QI+ L ++L +I+ +Q+ A+ L
Sbjct: 19 PTGRDLFAEGLLEFLRPAVQQLDSHVHAVRESQVELREQIDNLATELCRINEDQKVALDL 78
Query: 82 DSYTRKLVDAQQKISIVGNILQTTQ 106
D Y +KL++A++++ +V NILQ Q
Sbjct: 79 DPYVKKLLNARRRVVLVNNILQNAQ 103
>sp|Q9Z266|SNAPN_MOUSE SNARE-associated protein Snapin OS=Mus musculus GN=Snapin PE=1 SV=1
Length = 136
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 23 PT-QDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPL 81
PT +D AEGLL ++P V LD A R SQ+ELR QI+ L ++L +I+ +Q+ A+ L
Sbjct: 19 PTGRDLFAEGLLEFLRPAVQQLDSHVHAVRESQVELREQIDNLATELCRINEDQKVALDL 78
Query: 82 DSYTRKLVDAQQKISIVGNILQTTQ 106
D Y +KL++A++++ +V NILQ Q
Sbjct: 79 DPYVKKLLNARRRVVLVNNILQNAQ 103
>sp|O95295|SNAPN_HUMAN SNARE-associated protein Snapin OS=Homo sapiens GN=SNAPIN PE=1 SV=1
Length = 136
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 22 NPT-QDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVP 80
PT +D AEGLL ++P V LD A R SQ+ELR QI+ L ++L +I+ +Q+ A+
Sbjct: 18 GPTGRDLFAEGLLEFLRPAVQQLDSHVHAVRESQVELREQIDNLATELCRINEDQKVALD 77
Query: 81 LDSYTRKLVDAQQKISIVGNILQTTQ 106
LD Y +KL++A++++ +V NILQ Q
Sbjct: 78 LDPYVKKLLNARRRVVLVNNILQNAQ 103
>sp|Q9CXT8|MPPB_MOUSE Mitochondrial-processing peptidase subunit beta OS=Mus musculus
GN=Pmpcb PE=2 SV=1
Length = 489
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 47 FRATRA-SQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTT 105
F+ T+ SQL+L L+IE + + L+ ++ +QT +++R D + + I+ +I+Q +
Sbjct: 108 FKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSR---DLPRAVEILADIIQNS 164
Query: 106 QVA 108
+
Sbjct: 165 TLG 167
>sp|Q03346|MPPB_RAT Mitochondrial-processing peptidase subunit beta OS=Rattus
norvegicus GN=Pmpcb PE=1 SV=3
Length = 489
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 47 FRATRA-SQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTT 105
F+ T+ SQL+L L+IE + + L+ ++ +QT ++++ D + + I+ +I+Q +
Sbjct: 108 FKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSK---DLPRAVEILADIIQNS 164
Query: 106 QVA 108
+
Sbjct: 165 TLG 167
>sp|Q3SZ71|MPPB_BOVIN Mitochondrial-processing peptidase subunit beta OS=Bos taurus
GN=PMPCB PE=2 SV=1
Length = 490
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 47 FRATRA-SQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTT 105
F+ T+ SQL+L L+IE + + L+ ++ +QT ++++ D + + I+ +I+Q +
Sbjct: 109 FKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSK---DLPRAVEILADIIQNS 165
Query: 106 QVA 108
+
Sbjct: 166 TLG 168
>sp|Q5REK3|MPPB_PONAB Mitochondrial-processing peptidase subunit beta OS=Pongo abelii
GN=PMPCB PE=2 SV=1
Length = 489
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 47 FRATRA-SQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTT 105
F+ T+ SQL+L L+IE + + L+ ++ +QT ++++ D + + I+ +I+Q +
Sbjct: 108 FKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSK---DLPRAVEILADIIQNS 164
Query: 106 QVA 108
+
Sbjct: 165 TLG 167
>sp|O75439|MPPB_HUMAN Mitochondrial-processing peptidase subunit beta OS=Homo sapiens
GN=PMPCB PE=1 SV=2
Length = 489
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 47 FRATRA-SQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTT 105
F+ T+ SQL+L L+IE + + L+ ++ +QT ++++ D + + I+ +I+Q +
Sbjct: 108 FKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSK---DLPRAVEILADIIQNS 164
Query: 106 QVA 108
+
Sbjct: 165 TLG 167
>sp|Q8I1F6|PRPD3_DROER Diphenoloxidase subunit A3 OS=Drosophila erecta GN=Dox-A3 PE=3 SV=2
Length = 683
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 16/105 (15%)
Query: 22 NPTQDTIAEGLLGLIKPTVDLL------DEKFRATRASQL-----ELRLQIEALTSQLDK 70
N ++ IAEG P +D L +F TR S + +LR+ I+ + ++
Sbjct: 262 NNLEEPIAEGYF----PKMDSLVASRAFPPRFDNTRLSDVDRPINQLRVGIDDMKRWRER 317
Query: 71 ISAEQQTAVPLDSYTRKLV-DAQQKISIVGNILQTTQVAMHKKFF 114
I LD+ +K+V D + I I+GNI++++Q+ +K +
Sbjct: 318 IYEAIHQGYVLDANHKKIVLDDVKGIDILGNIIESSQLTPNKTLY 362
>sp|Q09778|TSC1_SCHPO Tuberous sclerosis 1 protein homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tsc1 PE=1 SV=1
Length = 899
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 40 VDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQ--------QTAVPLDSYTRKLVDA 91
+ L E+ +A ++ + EL+ IE+L SQL+ I Q Q + L Y KL +
Sbjct: 638 IKALREEKKAWKSEESELKSSIESLISQLESIRNSQIDIAFSKNQLELKLQLYETKLKEY 697
Query: 92 QQKISIV 98
+Q +S V
Sbjct: 698 EQHLSCV 704
>sp|Q06002|BFSP1_BOVIN Filensin OS=Bos taurus GN=BFSP1 PE=1 SV=2
Length = 756
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 35 LIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQK 94
L+K ++ L+++ A A LRLQIEA Q D ISA + D Y + L++ Q
Sbjct: 134 LLKEMLERLNKE--ADEALLRNLRLQIEAQFLQGD-ISAAK------DRYKKNLLEIQTY 184
Query: 95 ISIVGNILQTTQVA 108
++I+ I+QTT A
Sbjct: 185 VTILQQIIQTTPQA 198
>sp|Q9W2M2|TREA_DROME Trehalase OS=Drosophila melanogaster GN=Treh PE=1 SV=1
Length = 596
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 62 EALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKKF 113
+A T L ++ + A+P+D + A KI GN+L T Q A+ K F
Sbjct: 22 QAKTYSLPDLTTDYNNAIPVDEEEAQDPFASCKIYCEGNLLHTIQTAVPKLF 73
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,631,522
Number of Sequences: 539616
Number of extensions: 1213412
Number of successful extensions: 3225
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3203
Number of HSP's gapped (non-prelim): 45
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)