Query psy460
Match_columns 117
No_of_seqs 54 out of 56
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 21:04:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gwk_C SAG1039, putative uncha 94.7 0.48 1.6E-05 30.5 10.2 81 31-112 1-81 (98)
2 3u0c_A Invasin IPAB, 62 kDa an 92.9 0.65 2.2E-05 35.8 8.6 83 27-113 55-144 (201)
3 2akf_A Coronin-1A; coiled coil 87.5 0.5 1.7E-05 26.7 2.8 19 95-113 8-26 (32)
4 3htk_B Structural maintenance 87.1 4.2 0.00014 25.8 10.4 69 38-112 4-72 (73)
5 2xdj_A Uncharacterized protein 86.1 5.3 0.00018 26.6 7.8 34 40-73 8-41 (83)
6 2vs0_A Virulence factor ESXA; 85.5 4.9 0.00017 25.1 9.7 76 36-112 4-79 (97)
7 3zbh_A ESXA; unknown function, 85.2 5.2 0.00018 25.1 9.0 80 32-112 3-82 (99)
8 3na7_A HP0958; flagellar bioge 80.2 17 0.00059 27.6 9.9 56 37-98 31-86 (256)
9 4ioe_A Secreted protein ESXB; 77.7 10 0.00035 23.6 8.1 78 34-112 5-82 (93)
10 1l8d_A DNA double-strand break 77.5 13 0.00044 24.6 10.2 40 34-73 6-45 (112)
11 3fav_A ESAT-6-like protein ESX 76.8 12 0.00041 24.0 6.8 76 36-112 5-80 (101)
12 1l8d_A DNA double-strand break 75.4 15 0.00051 24.3 7.2 51 16-73 49-99 (112)
13 1m1j_B Fibrinogen beta chain; 75.1 38 0.0013 28.8 12.2 42 8-51 69-113 (464)
14 3cvf_A Homer-3, homer protein 73.8 17 0.00057 24.1 8.3 50 36-98 25-74 (79)
15 3cve_A Homer protein homolog 1 71.8 18 0.00062 23.6 8.3 50 36-98 19-68 (72)
16 4abx_A DNA repair protein RECN 66.5 33 0.0011 24.6 9.0 41 55-101 97-137 (175)
17 3b5n_D Protein transport prote 66.4 16 0.00056 22.8 5.4 57 56-112 7-64 (64)
18 3u5e_h 60S ribosomal protein L 65.6 15 0.0005 26.1 5.6 50 53-106 13-62 (120)
19 3i00_A HIP-I, huntingtin-inter 64.3 34 0.0012 24.0 7.6 50 23-72 11-60 (120)
20 4afl_A P29ING4, inhibitor of g 63.4 22 0.00075 23.5 5.9 48 20-68 56-103 (104)
21 3hnw_A Uncharacterized protein 62.3 39 0.0013 24.0 9.4 52 56-113 72-123 (138)
22 1sfc_D Protein (SNAP-25B), pro 59.9 26 0.00088 22.8 5.7 35 81-115 52-86 (87)
23 2pnv_A Small conductance calci 59.2 20 0.00067 21.3 4.5 28 47-74 11-38 (43)
24 1jnm_A Proto-oncogene C-JUN; B 57.6 30 0.001 21.1 5.6 36 38-73 22-57 (62)
25 3v2d_2 50S ribosomal protein L 55.9 17 0.00058 23.3 4.1 52 52-105 16-67 (72)
26 1t2k_D Cyclic-AMP-dependent tr 54.1 34 0.0012 20.7 6.1 36 38-73 22-57 (61)
27 1kmi_Z CHEZ, chemotaxis protei 53.8 69 0.0024 24.2 9.5 22 92-113 146-167 (214)
28 1ik9_A DNA repair protein XRCC 53.3 71 0.0024 24.2 12.2 74 31-109 125-206 (213)
29 1t3j_A Mitofusin 1; coiled coi 53.2 51 0.0018 22.5 8.5 71 14-105 20-90 (96)
30 2gd5_A Charged multivesicular 53.0 61 0.0021 23.3 7.6 31 34-64 17-47 (179)
31 3cve_A Homer protein homolog 1 53.0 42 0.0015 21.8 5.7 39 35-73 22-60 (72)
32 2wt7_A Proto-oncogene protein 52.3 38 0.0013 20.7 6.1 36 38-73 23-58 (63)
33 3fav_B ESAT-6, 6 kDa early sec 52.2 40 0.0014 20.9 9.5 71 41-112 8-78 (94)
34 4i0x_B ESAT-6-like protein MAB 51.8 45 0.0015 21.5 8.7 77 34-111 7-85 (103)
35 1n7s_D SNAP-25A; neuronal snar 51.7 38 0.0013 20.6 5.6 55 58-112 9-64 (66)
36 3m48_A General control protein 51.5 29 0.001 19.7 4.1 28 41-68 3-30 (33)
37 2z5i_A TM, general control pro 51.3 35 0.0012 20.6 4.8 41 23-63 4-44 (52)
38 3na7_A HP0958; flagellar bioge 51.3 76 0.0026 23.9 12.8 82 32-113 40-124 (256)
39 1sum_B Phosphate transport sys 51.1 67 0.0023 23.2 9.1 46 28-73 12-57 (235)
40 3cvf_A Homer-3, homer protein 50.8 46 0.0016 22.0 5.7 43 31-73 24-66 (79)
41 4a17_U RPL35, 60S ribosomal pr 49.8 41 0.0014 23.9 5.7 53 53-106 14-66 (124)
42 2i0m_A Phosphate transport sys 47.9 70 0.0024 22.6 8.4 46 28-73 12-57 (216)
43 2dgc_A Protein (GCN4); basic d 47.8 27 0.00094 21.7 4.0 24 42-65 34-57 (63)
44 3r2p_A Apolipoprotein A-I; amp 47.6 42 0.0014 24.2 5.7 35 30-64 59-94 (185)
45 3tul_A Cell invasion protein S 47.1 37 0.0013 25.3 5.2 79 32-113 13-96 (158)
46 3frt_A Charged multivesicular 46.6 94 0.0032 23.7 8.7 77 27-105 10-90 (218)
47 2oqq_A Transcription factor HY 46.0 45 0.0016 19.8 4.8 29 39-67 4-32 (42)
48 3viq_B Mating-type switching p 44.7 40 0.0014 22.6 4.7 34 56-90 12-49 (85)
49 2ba2_A D12_ORF131, hypothetica 44.7 70 0.0024 21.6 9.4 22 92-113 63-84 (85)
50 3t97_C Nuclear pore glycoprote 44.4 58 0.002 20.6 5.2 35 39-73 13-47 (64)
51 3j21_W 50S ribosomal protein L 44.1 39 0.0013 21.6 4.4 51 53-106 10-62 (72)
52 1m1j_C Fibrinogen gamma chain; 44.1 1.4E+02 0.0047 24.9 11.1 83 7-94 6-95 (409)
53 1gd2_E Transcription factor PA 43.9 42 0.0014 21.5 4.6 32 40-71 31-69 (70)
54 2g0u_A Type III secretion syst 43.5 5.8 0.0002 27.2 0.4 63 34-106 16-78 (92)
55 4etp_A Kinesin-like protein KA 43.1 59 0.002 26.6 6.4 55 40-107 5-59 (403)
56 2no2_A HIP-I, huntingtin-inter 42.7 78 0.0027 21.6 7.2 31 42-72 12-42 (107)
57 3s4r_A Vimentin; alpha-helix, 41.6 74 0.0025 21.0 7.3 42 31-72 49-90 (93)
58 3mtu_E Head morphogenesis prot 41.6 75 0.0025 21.0 6.0 36 33-68 39-74 (77)
59 1gd2_E Transcription factor PA 40.8 55 0.0019 20.9 4.8 24 48-71 14-41 (70)
60 1ci6_A Transcription factor AT 40.6 63 0.0021 19.9 5.8 35 39-73 24-58 (63)
61 3jyw_X 60S ribosomal protein L 40.5 7.4 0.00025 26.2 0.5 49 53-105 12-60 (86)
62 4i0x_A ESAT-6-like protein MAB 40.1 69 0.0024 20.2 8.5 70 41-111 3-72 (94)
63 2q12_A DIP13 alpha, DCC-intera 39.9 63 0.0022 24.0 5.7 38 35-72 221-258 (265)
64 2vkl_A RV0948C/MT0975; helical 39.9 67 0.0023 20.9 5.2 27 35-61 16-42 (90)
65 1dh3_A Transcription factor CR 39.3 27 0.00091 21.2 2.9 27 39-65 23-49 (55)
66 1r73_A TM1492, 50S ribosomal p 39.2 49 0.0017 20.7 4.3 53 52-106 9-61 (66)
67 3q8t_A Beclin-1; autophagy, AT 39.1 84 0.0029 20.9 8.2 69 46-114 26-95 (96)
68 3h6p_C ESAT-6-like protein ESX 38.8 61 0.0021 20.3 4.8 70 39-109 7-76 (96)
69 3qfl_A MLA10; coiled-coil, (CC 38.7 63 0.0022 21.6 5.1 37 36-72 3-39 (115)
70 2jee_A YIIU; FTSZ, septum, coi 38.4 86 0.0029 20.8 10.7 36 38-73 6-41 (81)
71 2hy6_A General control protein 38.1 56 0.0019 18.6 4.8 29 41-69 4-32 (34)
72 3m9b_A Proteasome-associated A 37.3 40 0.0014 26.7 4.4 38 36-73 59-96 (251)
73 2zkr_v 60S ribosomal protein L 37.3 36 0.0012 24.1 3.7 50 53-105 13-64 (123)
74 3iz5_c 60S ribosomal protein L 37.2 84 0.0029 22.2 5.7 52 53-106 15-66 (124)
75 1ecm_A Endo-oxabicyclic transi 36.8 76 0.0026 20.9 5.2 15 57-71 10-24 (109)
76 4ioe_A Secreted protein ESXB; 36.8 72 0.0025 19.5 6.1 32 41-72 52-83 (93)
77 1i84_S Smooth muscle myosin he 36.5 2.4E+02 0.0082 25.9 9.9 29 43-71 869-897 (1184)
78 1xaw_A Occludin; coiled-coil, 36.1 84 0.0029 22.8 5.6 27 88-114 111-137 (140)
79 2d8d_A Aroag, phospho-2-dehydr 35.9 84 0.0029 20.0 5.2 16 56-71 7-22 (90)
80 3qne_A Seryl-tRNA synthetase, 35.1 2.1E+02 0.0071 24.3 10.8 72 38-112 33-104 (485)
81 3ol1_A Vimentin; structural ge 34.6 85 0.0029 21.5 5.3 44 30-73 12-55 (119)
82 1nkp_B MAX protein, MYC proto- 34.1 88 0.003 19.7 5.0 32 40-71 49-80 (83)
83 3rmi_A Chorismate mutase prote 33.9 87 0.003 21.2 5.2 16 56-71 16-31 (114)
84 2wq1_A General control protein 33.9 66 0.0023 18.2 5.0 27 41-67 3-29 (33)
85 1gu4_A CAAT/enhancer binding p 33.8 97 0.0033 20.1 5.2 34 41-74 39-72 (78)
86 2zjr_V 50S ribosomal protein L 33.0 46 0.0016 20.9 3.4 50 53-104 10-59 (67)
87 4afl_A P29ING4, inhibitor of g 33.0 1E+02 0.0035 20.1 9.2 31 84-114 71-101 (104)
88 1kd8_A GABH AIV, GCN4 acid bas 32.7 73 0.0025 18.3 5.1 30 41-70 4-33 (36)
89 1ybz_A Chorismate mutase; cons 32.7 1E+02 0.0034 20.2 5.2 19 35-53 21-39 (91)
90 1gs9_A Apolipoprotein E, APOE4 32.6 1.4E+02 0.0048 21.5 7.3 44 30-73 76-120 (165)
91 1vq8_V 50S ribosomal protein L 32.0 98 0.0033 19.6 6.3 52 52-104 12-63 (71)
92 3bbo_Z Ribosomal protein L29; 30.6 71 0.0024 24.1 4.6 51 52-104 73-123 (173)
93 1kd8_B GABH BLL, GCN4 acid bas 30.5 81 0.0028 18.1 5.2 30 40-69 3-32 (36)
94 1fxk_C Protein (prefoldin); ar 29.9 1.3E+02 0.0043 20.2 6.2 34 38-71 88-121 (133)
95 1hx1_B BAG-1, BAG-family molec 29.8 1.5E+02 0.005 20.9 10.1 67 44-113 10-76 (114)
96 1hjb_A Ccaat/enhancer binding 27.6 1.4E+02 0.0046 19.8 5.7 34 42-75 40-73 (87)
97 2yxy_A Hypothetical conserved 27.2 56 0.0019 23.2 3.3 41 52-93 14-54 (115)
98 1sf9_A YFHH hypothetical prote 26.7 52 0.0018 23.8 3.1 42 51-93 31-72 (128)
99 1lwu_C Fibrinogen gamma chain; 26.5 2.5E+02 0.0086 22.5 8.0 44 30-74 12-55 (323)
100 2wg5_A General control protein 26.4 59 0.002 22.0 3.2 26 48-73 10-35 (109)
101 2oxj_A Hybrid alpha/beta pepti 26.3 95 0.0033 17.6 4.6 28 41-68 4-31 (34)
102 2dq0_A Seryl-tRNA synthetase; 26.1 2.8E+02 0.0095 22.9 10.6 73 38-113 31-103 (455)
103 2ap3_A Conserved hypothetical 26.0 1.5E+02 0.0051 22.5 5.8 41 32-72 146-189 (199)
104 1l4a_D S-SNAP25 fusion protein 25.7 74 0.0025 20.7 3.5 34 81-114 53-86 (87)
105 1cf7_A Protein (transcription 25.5 37 0.0013 21.8 2.0 30 76-105 28-58 (76)
106 3c3g_A Alpha/beta peptide with 25.5 97 0.0033 17.5 5.0 28 41-68 3-30 (33)
107 3r8s_Y 50S ribosomal protein L 25.3 50 0.0017 20.5 2.5 49 53-103 10-58 (63)
108 3ret_A Salicylate biosynthesis 25.2 92 0.0031 20.3 4.0 16 56-71 12-27 (101)
109 1uo4_A General control protein 25.2 1E+02 0.0034 17.5 4.3 26 41-66 4-29 (34)
110 3ghg_A Fibrinogen alpha chain; 25.1 1.3E+02 0.0046 26.4 5.9 54 12-68 37-94 (562)
111 3vkg_A Dynein heavy chain, cyt 25.0 5.8E+02 0.02 27.0 11.1 60 40-105 2016-2075(3245)
112 2l5g_B Putative uncharacterize 24.6 1.2E+02 0.0039 18.0 4.8 29 39-74 10-38 (42)
113 4dk0_A Putative MACA; alpha-ha 24.5 2.3E+02 0.0079 21.4 9.9 58 58-115 90-151 (369)
114 3efg_A Protein SLYX homolog; x 24.2 1.5E+02 0.005 19.1 5.5 38 32-69 22-59 (78)
115 1r6f_A Virulence-associated V 24.1 96 0.0033 25.3 4.5 44 32-75 96-149 (310)
116 1ezj_A Nucleocapsid phosphopro 24.1 1.9E+02 0.0065 20.3 8.2 49 27-75 48-96 (115)
117 2q13_A DCC-interacting protein 24.0 1.6E+02 0.0055 23.0 5.8 37 35-71 221-257 (385)
118 3swk_A Vimentin; cytoskeleton, 24.0 1E+02 0.0035 20.1 4.0 25 48-72 59-83 (86)
119 2zvf_A Alanyl-tRNA synthetase; 23.9 1.1E+02 0.0038 21.1 4.4 45 27-71 14-58 (171)
120 2f1m_A Acriflavine resistance 23.7 2.1E+02 0.0073 20.7 9.7 68 45-112 60-131 (277)
121 3hnw_A Uncharacterized protein 23.7 1.9E+02 0.0066 20.3 8.9 56 51-112 74-129 (138)
122 3c3f_A Alpha/beta peptide with 23.7 1.1E+02 0.0037 17.4 4.6 28 41-68 4-31 (34)
123 2zxx_A Geminin; coiled-coil, c 23.5 1.1E+02 0.0036 20.3 4.0 40 55-94 37-76 (79)
124 3a7p_A Autophagy protein 16; c 23.5 2.2E+02 0.0076 20.9 9.7 55 53-113 69-123 (152)
125 1gq2_A Malic enzyme; oxidoredu 23.3 11 0.00037 33.1 -1.3 24 29-52 25-48 (555)
126 3sjb_C Golgi to ER traffic pro 23.0 1.6E+02 0.0055 20.0 4.9 55 52-110 23-80 (93)
127 1nlw_A MAD protein, MAX dimeri 22.9 1.5E+02 0.0053 18.8 5.0 31 39-69 48-78 (80)
128 1bgf_A STAT-4; transcription f 22.5 2E+02 0.0068 20.0 6.0 70 23-97 48-118 (124)
129 2w6b_A RHO guanine nucleotide 22.4 57 0.0019 20.5 2.3 33 56-88 14-50 (56)
130 1o0s_A NAD-ME, NAD-dependent m 22.3 13 0.00046 32.8 -0.9 24 29-52 61-84 (605)
131 2v71_A Nuclear distribution pr 22.3 2.5E+02 0.0086 21.1 10.4 31 42-72 46-76 (189)
132 3mhs_C SAGA-associated factor 22.3 1.9E+02 0.0067 19.8 5.3 24 24-47 7-31 (99)
133 3u1c_A Tropomyosin alpha-1 cha 22.1 1.8E+02 0.0061 19.2 10.6 51 41-97 26-76 (101)
134 2gd5_A Charged multivesicular 21.8 2.2E+02 0.0076 20.3 7.6 32 41-72 10-41 (179)
135 1avy_A Fibritin, gpwac M; bact 21.7 64 0.0022 21.2 2.5 51 37-87 7-60 (74)
136 3oja_B Anopheles plasmodium-re 21.7 3.2E+02 0.011 22.1 9.1 66 40-111 518-583 (597)
137 1kmi_Z CHEZ, chemotaxis protei 21.7 2.6E+02 0.0088 21.0 9.5 63 45-110 71-133 (214)
138 2r2v_A GCN4 leucine zipper; co 21.1 1.3E+02 0.0043 17.1 5.0 28 41-68 4-31 (34)
139 3gpv_A Transcriptional regulat 21.0 1.9E+02 0.0066 19.9 5.2 30 35-64 99-128 (148)
140 3efd_K KCSA; helix bundle, C-t 20.2 45 0.0016 18.4 1.3 14 103-116 14-27 (30)
141 2dq3_A Seryl-tRNA synthetase; 20.1 3.6E+02 0.012 22.0 7.4 71 39-112 31-101 (425)
No 1
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=94.73 E-value=0.48 Score=30.47 Aligned_cols=81 Identities=19% Similarity=0.232 Sum_probs=69.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy460 31 GLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMH 110 (117)
Q Consensus 31 GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~ 110 (117)
|.|+-++=.-++|+......+....+++..+.+|...+..+... =.-..-..|.......+..+..++..|..+..-|.
T Consensus 1 ~MM~~i~V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~-W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~ 79 (98)
T 3gwk_C 1 GAMSQIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDEN-WDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLL 79 (98)
T ss_dssp CHHHHBCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-BCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888889999999999999999999999999999999763 34455688999999999999999999998888776
Q ss_pred hh
Q psy460 111 KK 112 (117)
Q Consensus 111 rl 112 (117)
+.
T Consensus 80 ~~ 81 (98)
T 3gwk_C 80 KV 81 (98)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 2
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=92.91 E-value=0.65 Score=35.76 Aligned_cols=83 Identities=22% Similarity=0.254 Sum_probs=60.9
Q ss_pred HHHHH-HHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-hhHHHhcCCCChhHHHHHHHHhhHHHHHHH
Q psy460 27 TIAEG-LLGLIKP-TVDLLDEKFRATRASQLELRLQIEALTSQL----D-KISAEQQTAVPLDSYTRKLVDAQQKISIVG 99 (117)
Q Consensus 27 ~La~G-L~~lL~P-~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL----~-~l~e~q~~p~dLd~yvkKL~~ak~RV~~vn 99 (117)
+|--| |+++++- .+.+|.+++..++ ||.+-++|. ..|+ . -+.+.|...=+++.-+.++.+++++|-..-
T Consensus 55 TLLLGnL~~IlG~~SlTqL~nrL~~wl-sQ~em~~qk---s~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~le 130 (201)
T 3u0c_A 55 TLLIGNLIQILGEKSLTALTNKITAWK-SQQQARQQK---NLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLE 130 (201)
T ss_dssp HHHHHHHHHHHCSGGGHHHHHHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44444 6677664 4689999998888 998888764 3333 2 222333333346888999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q psy460 100 NILQTTQVAMHKKF 113 (117)
Q Consensus 100 niLq~~Q~RL~rl~ 113 (117)
+.+..+|.||+-|+
T Consensus 131 kKvn~aq~kLs~L~ 144 (201)
T 3u0c_A 131 NKINQIQTRLSELD 144 (201)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998765
No 3
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=87.52 E-value=0.5 Score=26.73 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy460 95 ISIVGNILQTTQVAMHKKF 113 (117)
Q Consensus 95 V~~vnniLq~~Q~RL~rl~ 113 (117)
|-.+|.+.|..|+|++||.
T Consensus 8 ~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 8 VRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5567889999999999985
No 4
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=87.08 E-value=4.2 Score=25.84 Aligned_cols=69 Identities=13% Similarity=0.067 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy460 38 PTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKK 112 (117)
Q Consensus 38 P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl 112 (117)
+=|++++.++.....+|..+-.++-.....|+.+-+. +..--=+...+|-|...++.+....-+|..-+
T Consensus 4 ~ki~~~e~kI~~~~~~~~~~l~~~~~~~~~l~~~~~e------l~~~~i~~lE~~N~~~s~~~li~~~~~r~~el 72 (73)
T 3htk_B 4 QKIKDIDDQIQQLLLKQRHLLSKMASSMKSLKNCQKE------LISTQILQFEAQNMDVSMNDVIGFFNEREADL 72 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHhhHHhHHHHHHHHHHHHHHhh
Confidence 4578999999999999999999999988888888775 66666678899999999999999999987654
No 5
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=86.07 E-value=5.3 Score=26.61 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460 40 VDLLDEKFRATRASQLELRLQIEALTSQLDKISA 73 (117)
Q Consensus 40 I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e 73 (117)
|..|+..+.+-..++.+|..+|+.|..|+.+|..
T Consensus 8 v~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRG 41 (83)
T 2xdj_A 8 VTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRG 41 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555566677777777777777776664
No 6
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=85.45 E-value=4.9 Score=25.09 Aligned_cols=76 Identities=13% Similarity=0.219 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy460 36 IKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKK 112 (117)
Q Consensus 36 L~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl 112 (117)
++=..++|.......+..-.+++..+.+|...+..|... =.-..=..|.......+..+..++..|..+..-|.+.
T Consensus 4 i~v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~-W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~ 79 (97)
T 2vs0_A 4 IKMSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAAN-WEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNST 79 (97)
T ss_dssp BCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334457788888888899999999999999999998763 3444568899999999999999999999998888764
No 7
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=85.18 E-value=5.2 Score=25.09 Aligned_cols=80 Identities=11% Similarity=0.174 Sum_probs=59.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q psy460 32 LLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHK 111 (117)
Q Consensus 32 L~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~r 111 (117)
+++-++=..++|.......+....+++..+.+|...+..|... =.-..-..|.......+.....++..|..+..-|.+
T Consensus 3 M~~~i~v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~-W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~ 81 (99)
T 3zbh_A 3 MAGVIRLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGI-WEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHN 81 (99)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666778889999999999999999999999999998653 233345678888888888888888888888777765
Q ss_pred h
Q psy460 112 K 112 (117)
Q Consensus 112 l 112 (117)
.
T Consensus 82 ~ 82 (99)
T 3zbh_A 82 S 82 (99)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=80.22 E-value=17 Score=27.59 Aligned_cols=56 Identities=23% Similarity=0.217 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHH
Q psy460 37 KPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIV 98 (117)
Q Consensus 37 ~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~v 98 (117)
..-|..++..+...+..-..++..++.+..+++++... +...-.++-.++.+...+
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~------i~~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQT------LQDTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHcc
Confidence 34455555555555555555555555555555555443 555555555555554443
No 9
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=77.66 E-value=10 Score=23.57 Aligned_cols=78 Identities=14% Similarity=0.191 Sum_probs=55.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy460 34 GLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKK 112 (117)
Q Consensus 34 ~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl 112 (117)
+-++=.-++|+......+....+++..+.+|...+..|... =.-..-..|.......+..+..+...|..+..-|.++
T Consensus 5 ~~i~v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~-W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~ 82 (93)
T 4ioe_A 5 AEIKITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQ-WAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKRI 82 (93)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567888888889999999999999999999988531 2222356777766666666666666666666666554
No 10
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=77.49 E-value=13 Score=24.58 Aligned_cols=40 Identities=13% Similarity=0.200 Sum_probs=34.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460 34 GLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISA 73 (117)
Q Consensus 34 ~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e 73 (117)
+-++.-++++..++...+.-+.+++.+|..+...+..+..
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4456677888889999999999999999999999988865
No 11
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=76.78 E-value=12 Score=23.95 Aligned_cols=76 Identities=12% Similarity=0.108 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy460 36 IKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKK 112 (117)
Q Consensus 36 L~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl 112 (117)
++=..+.++..+........+|...|++|...+..|... =.----..|......-+.....++.+|..+.+-|...
T Consensus 5 i~v~~~~l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~-W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~ 80 (101)
T 3fav_A 5 MKTDAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQ-WRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQA 80 (101)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677778888888889999999998888888542 1111246788888888888888999998888877653
No 12
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=75.43 E-value=15 Score=24.26 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=28.1
Q ss_pred CCCCCCCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460 16 TEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISA 73 (117)
Q Consensus 16 ~~~~~~~p~rd~La~GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e 73 (117)
.=+.|..|-...... +.|+.++.++...+..=..|+.+|..+..++..+..
T Consensus 49 ~CPvCgs~l~~~~~~-------~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 49 KCPVCGRELTDEHRE-------ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp ECTTTCCEECHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665432222 455555666655555555556666666655555554
No 13
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=75.06 E-value=38 Score=28.84 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=27.2
Q ss_pred cccccCCCCCCCCCCchHHHHHHHHHHh---hhHHHHHHHHHHHHHH
Q psy460 8 TNTSADDKTEDFCDNPTQDTIAEGLLGL---IKPTVDLLDEKFRATR 51 (117)
Q Consensus 8 ~~ts~~~~~~~~~~~p~rd~La~GL~~l---L~P~I~~lD~~V~~tr 51 (117)
...-+|++-+.+| ||--.+++=|... +++.|++|+..+..+-
T Consensus 69 ~c~~~~~~~G~~C--PTtC~l~D~L~k~q~~V~~~LqeLe~~l~~ls 113 (464)
T 1m1j_B 69 GCKHPLDELGVLC--PTGCELQTTLLKQEKTVKPVLRDLKDRVAKFS 113 (464)
T ss_dssp CEECSSTTTCEEE--ECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCCccCcC--CCccHHHHHHHHhhhhhHhHHHHHHHHHHHHh
Confidence 3445778889999 4444555555544 5556777777776653
No 14
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=73.84 E-value=17 Score=24.14 Aligned_cols=50 Identities=12% Similarity=0.263 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHH
Q psy460 36 IKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIV 98 (117)
Q Consensus 36 L~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~v 98 (117)
|+-.|..++..+...+..|..++ .||+++.+. ||..+-.|.+.|+.++++
T Consensus 25 Le~~v~~le~~Le~s~~~q~~~~-------~Elk~l~e~------Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARAERERAR-------AEVGRAAQL------LDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH------HhhHHHHHHHHHHHHHHh
Confidence 55566677777777776665544 455555554 667777777777776653
No 15
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=71.76 E-value=18 Score=23.61 Aligned_cols=50 Identities=14% Similarity=0.306 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHH
Q psy460 36 IKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIV 98 (117)
Q Consensus 36 L~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~v 98 (117)
|+-.|..++..+...+..|..++ .||+++.+. ||..+-.|.+.|+.++++
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~-------~Elk~~~e~------Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFR-------SNLKTLLEI------LDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH------HhhHHHHHHHHHHHHHHh
Confidence 55566667777777776665544 455566664 677777777777776653
No 16
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=66.52 E-value=33 Score=24.55 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHH
Q psy460 55 LELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNI 101 (117)
Q Consensus 55 ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnni 101 (117)
.+..-+++.++.+|.++.+. +++|| .+|..+-.|+..++.+
T Consensus 97 ~~a~~~l~d~~~~L~~y~~~----le~DP--~rL~~ie~RL~~l~~L 137 (175)
T 4abx_A 97 RAALESVQAIAGELRDVAEG----SAADP--EALDRVEARLSALSKL 137 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCCCH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc----CCCCH--HHHHHHHHHHHHHHHH
Confidence 33344666777777776653 56666 4566666666655543
No 17
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=66.41 E-value=16 Score=22.82 Aligned_cols=57 Identities=12% Similarity=0.178 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhhHHHh-cCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy460 56 ELRLQIEALTSQLDKISAEQ-QTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKK 112 (117)
Q Consensus 56 eL~~qId~L~~eL~~l~e~q-~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl 112 (117)
++.+.+++|+.-+.++.... .--=.++..-+.|-..-.++-.+...++....||.||
T Consensus 7 e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~i 64 (64)
T 3b5n_D 7 EIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAGI 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34445555555555544321 0111345555666666677888899999999999875
No 18
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=65.63 E-value=15 Score=26.09 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHH
Q psy460 53 SQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQ 106 (117)
Q Consensus 53 SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q 106 (117)
|-.||.++|++|-.||-++.. |.+.=.+ -.++-.+|+-|.-|..++..-+
T Consensus 13 s~eEL~~~L~eLK~ELf~LRf-q~atgql---~~~Ir~vRR~IARi~Tvl~er~ 62 (120)
T 3u5e_h 13 SKEQLASQLVDLKKELAELKV-QKLSRPS---LPKIKTVRKSIACVLTVINEQQ 62 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-HHTTSSC---CTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHCCc---chhHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999987 4343334 6789999999999999997644
No 19
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=64.26 E-value=34 Score=23.99 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy460 23 PTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKIS 72 (117)
Q Consensus 23 p~rd~La~GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~ 72 (117)
-.||.+.++|..-+...-.+++.=-...+.-...|+.+|-.|..+|..-.
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999888888888888888888899999999999988887754
No 20
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=63.39 E-value=22 Score=23.48 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=40.2
Q ss_pred CCCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 20 CDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQL 68 (117)
Q Consensus 20 ~~~p~rd~La~GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL 68 (117)
.++|....+ ..|...+.-++.-.|+||+-+.+.+.-+.-+|-+|..+|
T Consensus 56 ~~~~r~~~l-~~I~~~~~~~~~l~dEKv~lA~~~~dlvdkhirrLD~dl 103 (104)
T 4afl_A 56 SSEEKLALL-KQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDL 103 (104)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ChhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334555556 679999999999999999999999999999999998765
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.27 E-value=39 Score=24.00 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q psy460 56 ELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKKF 113 (117)
Q Consensus 56 eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl~ 113 (117)
.++.+++.|.+++..+.++ +-.|-..|...+-+...+..-+...++++..|.
T Consensus 72 k~~~~~~~L~~~l~~~~kE------~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKE------IYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544443 344444455555555555555555554444443
No 22
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=59.87 E-value=26 Score=22.82 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=26.7
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhh
Q psy460 81 LDSYTRKLVDAQQKISIVGNILQTTQVAMHKKFFM 115 (117)
Q Consensus 81 Ld~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl~~~ 115 (117)
|+..-+-|.+.-..|-.++..|+.+..|+.+|-+.
T Consensus 52 ld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k 86 (87)
T 1sfc_D 52 IDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 55666666677778888899999999999887654
No 23
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=59.16 E-value=20 Score=21.28 Aligned_cols=28 Identities=11% Similarity=0.232 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy460 47 FRATRASQLELRLQIEALTSQLDKISAE 74 (117)
Q Consensus 47 V~~tr~SQ~eL~~qId~L~~eL~~l~e~ 74 (117)
|.+...+|.+|..+|++|...|+.|.+.
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4566778999999999999999998864
No 24
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=57.59 E-value=30 Score=21.09 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460 38 PTVDLLDEKFRATRASQLELRLQIEALTSQLDKISA 73 (117)
Q Consensus 38 P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e 73 (117)
.-+.+|+.+|.....-=.+|..+|..|..|+..|..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888899999999888877754
No 25
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=55.93 E-value=17 Score=23.34 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHH
Q psy460 52 ASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTT 105 (117)
Q Consensus 52 ~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~ 105 (117)
.|-.||..+|..|-.||-++.... +.=.++ --.++-.+|+.|.-|..+|..-
T Consensus 16 ~s~eEL~~~L~elk~ELf~LR~q~-atgql~-n~~~ir~vRr~IARi~Tvl~er 67 (72)
T 3v2d_2 16 LSPVELEKLVREKKRELMELRFQA-SIGQLS-QNHKIRDLKRQIARLLTVLNEK 67 (72)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH-HTTCCC-CTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HhcCCC-CcHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999998733 322232 3368889999999999998753
No 26
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=54.10 E-value=34 Score=20.71 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460 38 PTVDLLDEKFRATRASQLELRLQIEALTSQLDKISA 73 (117)
Q Consensus 38 P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e 73 (117)
.-+.+|+.+|.....--.+|..+|..|..|+..|..
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888888899998888887754
No 27
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=53.85 E-value=69 Score=24.20 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q psy460 92 QQKISIVGNILQTTQVAMHKKF 113 (117)
Q Consensus 92 k~RV~~vnniLq~~Q~RL~rl~ 113 (117)
.|||.+|-++++.+..||..|-
T Consensus 146 GQ~I~KVi~lv~~vE~~L~~ll 167 (214)
T 1kmi_Z 146 GQVIKRMMDVIQEIERQLLMVL 167 (214)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777766653
No 28
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=53.27 E-value=71 Score=24.18 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=46.2
Q ss_pred HHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHH-HHH
Q psy460 31 GLLGLIKPTV-------DLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVG-NIL 102 (117)
Q Consensus 31 GL~~lL~P~I-------~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vn-niL 102 (117)
.|+..+.-++ ..|..++.....+..+|..|+|++..+=...... -+.-|+.-|+.-|.||-..- -+|
T Consensus 125 elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~-----L~~KF~~lLNeKK~KIR~lq~~Ll 199 (213)
T 1ik9_A 125 ELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETD-----LYKRFILVLNEKKTKIRSLHNKLL 199 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4555555554 4455555555555566666666665554444332 14678888888889998888 777
Q ss_pred HHHHHHH
Q psy460 103 QTTQVAM 109 (117)
Q Consensus 103 q~~Q~RL 109 (117)
+.+|+.=
T Consensus 200 ~~~~~~~ 206 (213)
T 1ik9_A 200 NAAQERE 206 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 7777643
No 29
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=53.23 E-value=51 Score=22.53 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=35.0
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhH
Q psy460 14 DKTEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQ 93 (117)
Q Consensus 14 ~~~~~~~~~p~rd~La~GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~ 93 (117)
+-|...|.---.-.| .-+..+|...|.. .+.+|..+|.+|..++..|...| .-.|+| |.
T Consensus 20 ~~TSsncshQVQqEL--------s~tfarLc~~Vd~---t~~eL~~EI~~L~~eI~~LE~iq-------s~aK~L---Rn 78 (96)
T 1t3j_A 20 MFTSANCSHQVQQEM--------ATTFARLCQQVDM---TQKHLEEEIARLSKEIDQLEKMQ-------NNSKLL---RN 78 (96)
T ss_dssp -----------------------CCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---HH
T ss_pred HHHhcchHHHHHHHH--------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-------HHhHHH---HH
Confidence 345555654443333 3345556655554 45699999999999999987643 223333 45
Q ss_pred HHHHHHHHHHHH
Q psy460 94 KISIVGNILQTT 105 (117)
Q Consensus 94 RV~~vnniLq~~ 105 (117)
|-+-+.+-|.+-
T Consensus 79 KA~~L~~eLe~F 90 (96)
T 1t3j_A 79 KAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 30
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=53.04 E-value=61 Score=23.33 Aligned_cols=31 Identities=10% Similarity=0.242 Sum_probs=18.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 34 GLIKPTVDLLDEKFRATRASQLELRLQIEAL 64 (117)
Q Consensus 34 ~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L 64 (117)
..|+-++.+||..+.....-++.+...|-..
T Consensus 17 ~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka 47 (179)
T 2gd5_A 17 LKIRKEMRVVDRQIRDIQREEEKVKRSVKDA 47 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666665555444
No 31
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=52.97 E-value=42 Score=21.80 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460 35 LIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISA 73 (117)
Q Consensus 35 lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e 73 (117)
=++..=.+|+..=..-..-+.+|+.-++.|...+..+++
T Consensus 22 ~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~e 60 (72)
T 3cve_A 22 QLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333334444444444444445555555555555444444
No 32
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=52.30 E-value=38 Score=20.75 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460 38 PTVDLLDEKFRATRASQLELRLQIEALTSQLDKISA 73 (117)
Q Consensus 38 P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e 73 (117)
.-+..|+.+|.....--.+|+.+|..|..++..|..
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888887777777788888888887777654
No 33
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=52.23 E-value=40 Score=20.91 Aligned_cols=71 Identities=11% Similarity=0.100 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy460 41 DLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKK 112 (117)
Q Consensus 41 ~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl 112 (117)
..|+..+...+..-.+++..|+.|...+..+... =.----..|-.....-+.....++.+|..+..-|...
T Consensus 8 ~~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~-W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~~~ 78 (94)
T 3fav_B 8 AGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAA-WGGSGSEAYQGVQQKWDATATELNNALQNLARTISEA 78 (94)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG-GTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778888888889999999999999999764 2333567888888888888999999999888877653
No 34
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=51.83 E-value=45 Score=21.47 Aligned_cols=77 Identities=10% Similarity=0.079 Sum_probs=59.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH--hcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q psy460 34 GLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAE--QQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHK 111 (117)
Q Consensus 34 ~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~--q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~r 111 (117)
+-|+=....++..+...+....++.+.|++|...+..|... = .----..|...-..-.+....++..|..+...|..
T Consensus 7 ~~i~v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W-~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~ 85 (103)
T 4i0x_B 7 SEFSFDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQW-AGAAAAAYSQAHKEWMDAARELVEGLSQMEEAART 85 (103)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCe-echHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667888899999999999999999999999999764 1 11134678888888888888888999888877764
No 35
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=51.72 E-value=38 Score=20.59 Aligned_cols=55 Identities=9% Similarity=0.123 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhHHHh-cCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy460 58 RLQIEALTSQLDKISAEQ-QTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKK 112 (117)
Q Consensus 58 ~~qId~L~~eL~~l~e~q-~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl 112 (117)
.+.++.|+.-+.++.... .---.++..-+-|...-..|-.++..|+.+..|+.++
T Consensus 9 D~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l 64 (66)
T 1n7s_D 9 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344555555444444321 0111355666667777778888888899999888876
No 36
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=51.49 E-value=29 Score=19.66 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 41 DLLDEKFRATRASQLELRLQIEALTSQL 68 (117)
Q Consensus 41 ~~lD~~V~~tr~SQ~eL~~qId~L~~eL 68 (117)
.||+.+|.....--.+|..++.+|..-|
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4799999999988888888888886543
No 37
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=51.28 E-value=35 Score=20.61 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 23 PTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEA 63 (117)
Q Consensus 23 p~rd~La~GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~ 63 (117)
-+|..||+--..-|.-.|++|+..+.....--+.+.+.+|.
T Consensus 4 ~~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 4 LSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46788888888888889999988887665544555554444
No 38
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=51.25 E-value=76 Score=23.92 Aligned_cols=82 Identities=11% Similarity=0.050 Sum_probs=67.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh---cCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy460 32 LLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQ---QTAVPLDSYTRKLVDAQQKISIVGNILQTTQVA 108 (117)
Q Consensus 32 L~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q---~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~R 108 (117)
-+.-+.-.+..+...+......+..+...|+.+...+++...-+ ..+=++..+-+.+-..++|+.....-+..+.++
T Consensus 40 ~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ 119 (256)
T 3na7_A 40 DKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNE 119 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888889999999999999999988888887643 345678889999999999999999999888888
Q ss_pred HHhhh
Q psy460 109 MHKKF 113 (117)
Q Consensus 109 L~rl~ 113 (117)
+..+.
T Consensus 120 ie~~~ 124 (256)
T 3na7_A 120 IKRKS 124 (256)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 39
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=51.11 E-value=67 Score=23.23 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=25.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460 28 IAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISA 73 (117)
Q Consensus 28 La~GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e 73 (117)
+...+..+-.=+.+.++.-+.+....-.++..+|.....+++++..
T Consensus 12 l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~V~~~d~~iD~l~~ 57 (235)
T 1sum_B 12 FKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEV 57 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHH
Confidence 3444555555566666666666555445555555555555555544
No 40
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=50.84 E-value=46 Score=21.96 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=24.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460 31 GLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISA 73 (117)
Q Consensus 31 GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e 73 (117)
+|-+=++-.=.+|+..=..-..-+.+|+.-++.|...+..+++
T Consensus 24 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~e 66 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSE 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444455555555555555555556666666666666655555
No 41
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=49.80 E-value=41 Score=23.89 Aligned_cols=53 Identities=9% Similarity=0.129 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHH
Q psy460 53 SQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQ 106 (117)
Q Consensus 53 SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q 106 (117)
|-.||.++|++|-.||-++......--.++ --.++-.+|+-|.-|..+|..-+
T Consensus 14 s~eEL~~~L~eLK~ELf~LRfq~atggqle-n~~rIr~vRRdIARi~Tvl~er~ 66 (124)
T 4a17_U 14 TEEQLVGELGKLQTELSQLRIAKIAGGTAN-KLGRIGIVRKAIAKYLTIINEKR 66 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCccC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999987432221333 34688899999999999997644
No 42
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=47.95 E-value=70 Score=22.55 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=25.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460 28 IAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISA 73 (117)
Q Consensus 28 La~GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e 73 (117)
+...+..+-.=+.+.++.-+.+....-.++..++.....+++++..
T Consensus 12 l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~ 57 (216)
T 2i0m_A 12 LEQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQS 57 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHH
Confidence 3444555555566666666665554444555555555555555544
No 43
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=47.82 E-value=27 Score=21.69 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 42 LLDEKFRATRASQLELRLQIEALT 65 (117)
Q Consensus 42 ~lD~~V~~tr~SQ~eL~~qId~L~ 65 (117)
+|+.+|.....-=.+|..+|+.|.
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333333333333333
No 44
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=47.63 E-value=42 Score=24.23 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=15.1
Q ss_pred HHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy460 30 EGLLGLIKPTVDLLDEKF-RATRASQLELRLQIEAL 64 (117)
Q Consensus 30 ~GL~~lL~P~I~~lD~~V-~~tr~SQ~eL~~qId~L 64 (117)
..+..-|.|..+++=.++ ..+..-+..|...++.+
T Consensus 59 ~~l~~~l~p~~~e~~~~l~~~~~~Lr~~l~kdlee~ 94 (185)
T 3r2p_A 59 SKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEV 94 (185)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 344455555555444444 22333344444444433
No 45
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=47.07 E-value=37 Score=25.31 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=49.2
Q ss_pred HHHhhhH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHH-HhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHH
Q psy460 32 LLGLIKP-TVDLLDEKFRATR---ASQLELRLQIEALTSQLDKISA-EQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQ 106 (117)
Q Consensus 32 L~~lL~P-~I~~lD~~V~~tr---~SQ~eL~~qId~L~~eL~~l~e-~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q 106 (117)
|+.|++- .+++|.+++..-+ .||.+-++|+ +.|.....+ .|..-=..+.-+.++.+++..+-..-+.|..+|
T Consensus 13 l~~l~G~~Sl~qL~nrla~~~am~~sqqq~~eql---S~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq 89 (158)
T 3tul_A 13 LMTLLGDVSLSQLESRLAVWQAMIESQKEMGIQV---SKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQ 89 (158)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 4555543 4788888875443 4776666554 222222222 111111245667999999999999999999999
Q ss_pred HHHHhhh
Q psy460 107 VAMHKKF 113 (117)
Q Consensus 107 ~RL~rl~ 113 (117)
.||.-|+
T Consensus 90 ~kL~~L~ 96 (158)
T 3tul_A 90 NKLQSLD 96 (158)
T ss_dssp HHHTTC-
T ss_pred HHHhcCC
Confidence 9998764
No 46
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=46.64 E-value=94 Score=23.66 Aligned_cols=77 Identities=9% Similarity=0.133 Sum_probs=49.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHH
Q psy460 27 TIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQ----LDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNIL 102 (117)
Q Consensus 27 ~La~GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~e----L~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniL 102 (117)
....-.-..|+-.+++||-.++....-++.+...|-..+.. -+++.- ..-+-.--|+.||...|-++..|..-|
T Consensus 10 e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilA--kelVR~Rk~~~rl~~~kaqL~sV~~rl 87 (218)
T 3frt_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLA--KEMIRSRKAVSKLYASKAHMNSVLMGM 87 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444678889999999999999999999888888776541 122211 122333456666666666666666666
Q ss_pred HHH
Q psy460 103 QTT 105 (117)
Q Consensus 103 q~~ 105 (117)
+++
T Consensus 88 qt~ 90 (218)
T 3frt_A 88 KNQ 90 (218)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 47
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=45.96 E-value=45 Score=19.80 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 39 TVDLLDEKFRATRASQLELRLQIEALTSQ 67 (117)
Q Consensus 39 ~I~~lD~~V~~tr~SQ~eL~~qId~L~~e 67 (117)
-+.+||.+++....-=.+|.+.|-.|..|
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999988765
No 48
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=44.73 E-value=40 Score=22.61 Aligned_cols=34 Identities=24% Similarity=0.115 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhhHHHhcCCCC----hhHHHHHHHH
Q psy460 56 ELRLQIEALTSQLDKISAEQQTAVP----LDSYTRKLVD 90 (117)
Q Consensus 56 eL~~qId~L~~eL~~l~e~q~~p~d----Ld~yvkKL~~ 90 (117)
+|.++++.|..++..+... -..++ +..|+++|-.
T Consensus 12 ~L~~q~~~L~~ei~~~~a~-L~~~~~~~~~~~hI~~Lh~ 49 (85)
T 3viq_B 12 LLEQQKEQLESSLQDALAK-LKNRDAKQTVQKHIDLLHT 49 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHT-CSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHH
Confidence 3444555555555444331 12222 4566666643
No 49
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=44.67 E-value=70 Score=21.58 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q psy460 92 QQKISIVGNILQTTQVAMHKKF 113 (117)
Q Consensus 92 k~RV~~vnniLq~~Q~RL~rl~ 113 (117)
.+.+..|...|+.+-.||++|+
T Consensus 63 g~tl~lil~tL~~~nkRLDkle 84 (85)
T 2ba2_A 63 GKTLQLILEALQGINKRLDNLE 84 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhccC
Confidence 3566788888889999988875
No 50
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=44.44 E-value=58 Score=20.55 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460 39 TVDLLDEKFRATRASQLELRLQIEALTSQLDKISA 73 (117)
Q Consensus 39 ~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e 73 (117)
-|.+|-..|..+...|.+|..+|+-...+=+.|..
T Consensus 13 kI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~ 47 (64)
T 3t97_C 13 KITSLHREVEKVKLDQKRLDQELDFILSQQKELED 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677778888888888888888877555444443
No 51
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.13 E-value=39 Score=21.60 Aligned_cols=51 Identities=18% Similarity=0.104 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHh-cCC-CChhHHHHHHHHhhHHHHHHHHHHHHHH
Q psy460 53 SQLELRLQIEALTSQLDKISAEQ-QTA-VPLDSYTRKLVDAQQKISIVGNILQTTQ 106 (117)
Q Consensus 53 SQ~eL~~qId~L~~eL~~l~e~q-~~p-~dLd~yvkKL~~ak~RV~~vnniLq~~Q 106 (117)
|-.||..+|+.|-.||-++.... ..+ ++ --.++-.+|+.|.-|..+|..-+
T Consensus 10 s~~EL~~~L~elk~ELf~LR~q~atgq~l~---n~~~ir~vRr~IARi~Tvl~er~ 62 (72)
T 3j21_W 10 SIEEIDAKIRELRLQLAKERGLLTMGTSLE---NPMVIRNLRRDIARLLTIKKEKL 62 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCSSC---CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---CcHHHHHHHHHHHHHHHHHHHHH
Confidence 66899999999999999998733 122 21 12577889999999999987543
No 52
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=44.10 E-value=1.4e+02 Score=24.85 Aligned_cols=83 Identities=12% Similarity=0.163 Sum_probs=40.7
Q ss_pred ccccccCCCCCCCCCCchHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCCh--
Q psy460 7 STNTSADDKTEDFCDNPTQDTIAEGLL---GLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPL-- 81 (117)
Q Consensus 7 ~~~ts~~~~~~~~~~~p~rd~La~GL~---~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dL-- 81 (117)
....-+|+.-+-+|+..= .|++=|. .=+++-+.+|+..++.+..+=.+...-+-.+..- .++.|+.+++-
T Consensus 6 ~~c~~~~~~~G~~CPT~C--~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~---~~~~Q~~~~d~~e 80 (409)
T 1m1j_C 6 ENCCILDERFGSYCPTTC--GIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI---YPSEKQTLPQSIE 80 (409)
T ss_dssp TTSSSCCGGGCCEEECTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCSSTTCCSSCHH
T ss_pred CCcccCCcccCCcCCCcc--cHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccccCCCCCchh
Confidence 445567777777885543 3333333 2244666666666665555444333222222111 12334445543
Q ss_pred --hHHHHHHHHhhHH
Q psy460 82 --DSYTRKLVDAQQK 94 (117)
Q Consensus 82 --d~yvkKL~~ak~R 94 (117)
..+.+|+..-..+
T Consensus 81 ~~tq~skkml~~~~~ 95 (409)
T 1m1j_C 81 QLTQKSKKIIEEIIR 95 (409)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 3566666654333
No 53
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=43.85 E-value=42 Score=21.49 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Q psy460 40 VDLLDEKFRATRAS-------QLELRLQIEALTSQLDKI 71 (117)
Q Consensus 40 I~~lD~~V~~tr~S-------Q~eL~~qId~L~~eL~~l 71 (117)
|.+|+.+|...... =..|+.+|+.|..||..|
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555555544433 334566666666665543
No 54
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=43.45 E-value=5.8 Score=27.24 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=36.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHH
Q psy460 34 GLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQ 106 (117)
Q Consensus 34 ~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q 106 (117)
|.|.-+-..|+..|. ..+.+|+..|+.|. .+-+.|..|..|=.|+.++----+.=.|+.+...
T Consensus 16 ~~Ld~vs~~f~~~a~---~~~~~l~~Al~~L~-------~~psNPa~LAe~Qa~lseynl~RNaQSntiKa~K 78 (92)
T 2g0u_A 16 GYLTGIGRAFDDGVK---DLNKQLQDAQANLT-------KNPSDPTALANYQMIMSEYNLYRNAQSSAVKSMK 78 (92)
T ss_dssp HHHHHHHGGGCTTTH---HHHHHHHHHHHHHH-------HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred chHHHHHHHHHHHHH---HHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555443 34556666666664 3346788888888888877544444444444433
No 55
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=43.12 E-value=59 Score=26.57 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy460 40 VDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQV 107 (117)
Q Consensus 40 I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~ 107 (117)
|+.++.++...+.-=.+|...|..+..+++++.+. |......--.++|.++....
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEI-------------LIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHcCC
Confidence 56778888888887788888888888887777653 22222333344777776554
No 56
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=42.65 E-value=78 Score=21.57 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy460 42 LLDEKFRATRASQLELRLQIEALTSQLDKIS 72 (117)
Q Consensus 42 ~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~ 72 (117)
+...++-.++++|.++...+..|..++.++.
T Consensus 12 E~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 12 EVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778888888888888877777765
No 57
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=41.64 E-value=74 Score=21.03 Aligned_cols=42 Identities=10% Similarity=0.178 Sum_probs=29.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy460 31 GLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKIS 72 (117)
Q Consensus 31 GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~ 72 (117)
++..++...|..|=.+|..+..--..|..+|+.|..++.++.
T Consensus 49 ~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 49 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777777777777777777777777777666654
No 58
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=41.58 E-value=75 Score=21.03 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=27.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 33 LGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQL 68 (117)
Q Consensus 33 ~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL 68 (117)
|+-+.-+|++|+.++.....-.+.+...+|.--.+|
T Consensus 39 ~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~EL 74 (77)
T 3mtu_E 39 YGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTLLEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 677888899999999888877777777766544444
No 59
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=40.82 E-value=55 Score=20.92 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHhh
Q psy460 48 RATRASQLELRL----QIEALTSQLDKI 71 (117)
Q Consensus 48 ~~tr~SQ~eL~~----qId~L~~eL~~l 71 (117)
..-|.||...++ +|..|...+..+
T Consensus 14 ~qNR~AQRafReRK~~~i~~LE~~v~~l 41 (70)
T 1gd2_E 14 AQNRAAQRAFRKRKEDHLKALETQVVTL 41 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566655543 344444444333
No 60
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=40.58 E-value=63 Score=19.86 Aligned_cols=35 Identities=9% Similarity=0.211 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460 39 TVDLLDEKFRATRASQLELRLQIEALTSQLDKISA 73 (117)
Q Consensus 39 ~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e 73 (117)
-+..|+.++.....-=.+|+.+|..|..|+..|..
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888888888776654
No 61
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=40.46 E-value=7.4 Score=26.19 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHH
Q psy460 53 SQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTT 105 (117)
Q Consensus 53 SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~ 105 (117)
|-.||..+|++|-.||-+|.. |...=.+ -.++-.+|+.|.-|..+|..-
T Consensus 12 S~eEL~~~L~eLK~ELf~LRf-q~atgql---p~rIr~vRRdIARikTvl~er 60 (86)
T 3jyw_X 12 SKEQLASQLVDLKKELAELKV-QKLSRPS---LPKIKTVRKSIACVLTVINEQ 60 (86)
T ss_dssp CHHHHHHHHHHHTTTHHHHHH-HHHTCCC---HHHHTCCSTTTHHHHTTTTHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHCCC---chHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999987 3332233 678899999999999998753
No 62
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=40.09 E-value=69 Score=20.25 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q psy460 41 DLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHK 111 (117)
Q Consensus 41 ~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~r 111 (117)
++|......+...-.+++..|++|...+..|... =.--=-..|-.....-+.....++..|..+.+.|..
T Consensus 3 eel~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~-W~G~Aa~af~~~~~~w~~~a~~l~~~L~~i~~~l~~ 72 (94)
T 4i0x_A 3 DEVGALSKFAASLADQMRAGSNSLDRDVQSLFGV-WKGSAADAYRSGWDEMQDGATKVWNALTDIASTLGS 72 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT-CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777788888888999999999998888642 111123577778888888888889999888887765
No 63
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=39.92 E-value=63 Score=24.02 Aligned_cols=38 Identities=8% Similarity=0.023 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy460 35 LIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKIS 72 (117)
Q Consensus 35 lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~ 72 (117)
=+.|-+++|...++.+|....+.+.+.+++..+|+.-.
T Consensus 221 ~~~p~~~~l~~~l~~~r~~~~~~~~~~~~~~~~l~~~~ 258 (265)
T 2q12_A 221 QLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVAS 258 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57888999999999999888888888888888777443
No 64
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=39.88 E-value=67 Score=20.93 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 35 LIKPTVDLLDEKFRATRASQLELRLQI 61 (117)
Q Consensus 35 lL~P~I~~lD~~V~~tr~SQ~eL~~qI 61 (117)
-++--|+++|.++-..-.--..+..+|
T Consensus 16 ~lR~~ID~iD~~Ll~LL~~R~~~~~~I 42 (90)
T 2vkl_A 16 TLREEIDRLDAEILALVKRRAEVSKAI 42 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677766666555433333333
No 65
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=39.31 E-value=27 Score=21.17 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 39 TVDLLDEKFRATRASQLELRLQIEALT 65 (117)
Q Consensus 39 ~I~~lD~~V~~tr~SQ~eL~~qId~L~ 65 (117)
-+++|+.+|.....-=..|..++..|.
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777655554444444444443
No 66
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=39.21 E-value=49 Score=20.67 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHH
Q psy460 52 ASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQ 106 (117)
Q Consensus 52 ~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q 106 (117)
.|-.+|..+|..|-.||-.+.... +.=.+ .--.++-.+|+.|.-|..+|..-+
T Consensus 9 ~s~~EL~~~l~elk~ELf~LR~q~-atgql-~n~~~ir~vRr~IARi~Tvl~er~ 61 (66)
T 1r73_A 9 YTDEELKNLLEEKKRQLMELRFQL-AMGQL-KNTSLIKLTKRDIARIKTILRERE 61 (66)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH-HHTCC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HccCc-cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999987632 21112 234577889999999999987644
No 67
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=39.08 E-value=84 Score=20.89 Aligned_cols=69 Identities=10% Similarity=0.235 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcC-CCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhh
Q psy460 46 KFRATRASQLELRLQIEALTSQLDKISAEQQT-AVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKKFF 114 (117)
Q Consensus 46 ~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~-p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl~~ 114 (117)
.+..+-.-...|..+|..+..++.++...... -=+...|-..++..-.-.-+|++-+..++.-|+||.+
T Consensus 26 eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 26 ELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444445555666666666666543100 0023344445555555566788888888888888754
No 68
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=38.81 E-value=61 Score=20.33 Aligned_cols=70 Identities=10% Similarity=-0.082 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy460 39 TVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAM 109 (117)
Q Consensus 39 ~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL 109 (117)
....++..+...+..-.+++..++.|...+..|...=.- --=..|-..-..-.+....++.+|..+...|
T Consensus 7 ~~~~~~~~a~~i~~~~~~i~~~l~~l~~~v~~L~~~W~G-~A~~ay~~~~~~W~~~~~~l~~~L~~i~~~l 76 (96)
T 3h6p_C 7 NYPAMMAHAGDMAGYAGTLQSLGADIASEQAVLSSAWQG-DTGITYQGWQTQWNQALEDLVRAYQSMSGTH 76 (96)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHTGGGCCT-TSSSCHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777778888888888899998888888653211 1223444444444455556666666554433
No 69
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=38.75 E-value=63 Score=21.56 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy460 36 IKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKIS 72 (117)
Q Consensus 36 L~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~ 72 (117)
+++++.+|-+-+..=...+..++.+|..|..||..+.
T Consensus 3 v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~ 39 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMN 39 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 3455555555554444555666666666666666554
No 70
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=38.40 E-value=86 Score=20.80 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460 38 PTVDLLDEKFRATRASQLELRLQIEALTSQLDKISA 73 (117)
Q Consensus 38 P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e 73 (117)
.+.++|++||+.+-..=.-|+..|++|-++-..++.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999988877666666666666555444443
No 71
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=38.14 E-value=56 Score=18.59 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 41 DLLDEKFRATRASQLELRLQIEALTSQLD 69 (117)
Q Consensus 41 ~~lD~~V~~tr~SQ~eL~~qId~L~~eL~ 69 (117)
.||+.+|...-.--.+|..+..+|.+-|.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 58999999999988999988888876553
No 72
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=37.26 E-value=40 Score=26.68 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460 36 IKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISA 73 (117)
Q Consensus 36 L~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e 73 (117)
+.--+..|..+.+......++++.+|++|.+||++|..
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445566666666677888888888888888888743
No 73
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=37.25 E-value=36 Score=24.13 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHh--cCCCChhHHHHHHHHhhHHHHHHHHHHHHH
Q psy460 53 SQLELRLQIEALTSQLDKISAEQ--QTAVPLDSYTRKLVDAQQKISIVGNILQTT 105 (117)
Q Consensus 53 SQ~eL~~qId~L~~eL~~l~e~q--~~p~dLd~yvkKL~~ak~RV~~vnniLq~~ 105 (117)
|-.||.++|++|-.||-+|.... .+++ .--.++-.+|+.|.-|..++..-
T Consensus 13 s~eEL~~~L~eLK~ELf~LRfq~atgq~l---en~~rir~vRrdIARI~Tvl~er 64 (123)
T 2zkr_v 13 KKEELLKQLDDLKVELSQLRVAKVTGGAA---SKLSKIRVVRKSIARVLTVINQT 64 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCSC---CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCcc---cccHHHHHHHHHHHHHHHHHHHH
Confidence 66899999999999999998632 1122 12457788999999999998653
No 74
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=37.16 E-value=84 Score=22.24 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHH
Q psy460 53 SQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQ 106 (117)
Q Consensus 53 SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q 106 (117)
|-.||.++|++|-.||-++......- .+ .--.++-.+|+.|.-|..+|..-+
T Consensus 15 s~eEL~~~L~eLK~ELf~LRfq~atg-ql-en~~rIr~vRRdIARi~Tvl~er~ 66 (124)
T 3iz5_c 15 SKDDLTKQLAELKTELGQLRIQKVAS-SG-SKLNRIHDIRKSIARVLTVINAKQ 66 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHT-CH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhC-Cc-cchHHHHHHHHHHHHHHHHHHHHH
Confidence 66899999999999999998743222 34 334588899999999999997644
No 75
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=36.80 E-value=76 Score=20.87 Aligned_cols=15 Identities=40% Similarity=0.492 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHhh
Q psy460 57 LRLQIEALTSQLDKI 71 (117)
Q Consensus 57 L~~qId~L~~eL~~l 71 (117)
||.+||.+..+|-.|
T Consensus 10 lR~~ID~iD~~L~~L 24 (109)
T 1ecm_A 10 LREKISALDEKLLAL 24 (109)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 76
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=36.78 E-value=72 Score=19.47 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy460 41 DLLDEKFRATRASQLELRLQIEALTSQLDKIS 72 (117)
Q Consensus 41 ~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~ 72 (117)
+.|.......+.......+.|++++.+|+++.
T Consensus 52 ~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~A 83 (93)
T 4ioe_A 52 AKFRGEFIQSKQAMQQYIPILEGISTDLKRIA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555555444
No 77
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=36.48 E-value=2.4e+02 Score=25.92 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy460 43 LDEKFRATRASQLELRLQIEALTSQLDKI 71 (117)
Q Consensus 43 lD~~V~~tr~SQ~eL~~qId~L~~eL~~l 71 (117)
+..++......-.++..+++.|.+++..+
T Consensus 869 l~~~L~~le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 869 TKERQQKAEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444333
No 78
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=36.12 E-value=84 Score=22.78 Aligned_cols=27 Identities=4% Similarity=-0.107 Sum_probs=23.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhh
Q psy460 88 LVDAQQKISIVGNILQTTQVAMHKKFF 114 (117)
Q Consensus 88 L~~ak~RV~~vnniLq~~Q~RL~rl~~ 114 (117)
....|+|..-+++.|.+|..++..-|.
T Consensus 111 y~ekK~Rc~yL~~KLsHIK~lI~~YD~ 137 (140)
T 1xaw_A 111 YKSKKNHCKQLKSKLSHIKKMVGDYDR 137 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 478899999999999999999877654
No 79
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=35.88 E-value=84 Score=19.95 Aligned_cols=16 Identities=13% Similarity=0.451 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhh
Q psy460 56 ELRLQIEALTSQLDKI 71 (117)
Q Consensus 56 eL~~qId~L~~eL~~l 71 (117)
+||.+||.+..+|-.|
T Consensus 7 ~lR~~ID~iD~~l~~L 22 (90)
T 2d8d_A 7 ALRKEVDRVNREILRL 22 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555554444443
No 80
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=35.08 E-value=2.1e+02 Score=24.29 Aligned_cols=72 Identities=6% Similarity=-0.036 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy460 38 PTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKK 112 (117)
Q Consensus 38 P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl 112 (117)
..|-+||++-+.++..-.+|+.+.-.++.++.++... .-+...-..+....+.++..+...+..+++.+..+
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~---~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKA---KEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888899998898888776542 23566777778888888988888888888888654
No 81
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=34.58 E-value=85 Score=21.46 Aligned_cols=44 Identities=9% Similarity=0.172 Sum_probs=37.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460 30 EGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISA 73 (117)
Q Consensus 30 ~GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e 73 (117)
+++..++...|..|-.+|.++..-...|..+|+.+..++..+..
T Consensus 12 ~~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~ 55 (119)
T 3ol1_A 12 SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 55 (119)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888999999999999999999999999999887777754
No 82
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=34.10 E-value=88 Score=19.70 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy460 40 VDLLDEKFRATRASQLELRLQIEALTSQLDKI 71 (117)
Q Consensus 40 I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l 71 (117)
|..|...++....--.+|+.+...|...|..+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555666655555443
No 83
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=33.91 E-value=87 Score=21.23 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHhh
Q psy460 56 ELRLQIEALTSQLDKI 71 (117)
Q Consensus 56 eL~~qId~L~~eL~~l 71 (117)
+||.+||.+..+|-.|
T Consensus 16 ~lR~~ID~ID~~il~L 31 (114)
T 3rmi_A 16 YLRQSIDNFDITLIHI 31 (114)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555554444443
No 84
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=33.87 E-value=66 Score=18.17 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 41 DLLDEKFRATRASQLELRLQIEALTSQ 67 (117)
Q Consensus 41 ~~lD~~V~~tr~SQ~eL~~qId~L~~e 67 (117)
.||+.+|...-.--.+|..++.+|.+-
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 588999988888777888887777553
No 85
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=33.85 E-value=97 Score=20.10 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy460 41 DLLDEKFRATRASQLELRLQIEALTSQLDKISAE 74 (117)
Q Consensus 41 ~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~ 74 (117)
.++..+|.....-=..|+.+|+.|..|+..|...
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666667778888999998888888764
No 86
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=33.03 E-value=46 Score=20.87 Aligned_cols=50 Identities=10% Similarity=0.208 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHH
Q psy460 53 SQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQT 104 (117)
Q Consensus 53 SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~ 104 (117)
|-.+|..+|..|-.||-.+.... +.=.+ .--.++-.+|+.|.-|..+|..
T Consensus 10 s~~EL~~~l~elk~ELf~LR~q~-atgql-~n~~~ir~vRr~IARi~Tvl~e 59 (67)
T 2zjr_V 10 QATDFAKEIDARKKELMELRFQA-AAGQL-AQPHRVRQLRREVAQLNTVKAE 59 (67)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHH-HHSCC-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HhCCC-cccHHHHHHHHHHHHHHHHHHH
Confidence 55789999999999999987632 21112 2345778899999999998864
No 87
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=32.98 E-value=1e+02 Score=20.10 Aligned_cols=31 Identities=6% Similarity=0.034 Sum_probs=22.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhhh
Q psy460 84 YTRKLVDAQQKISIVGNILQTTQVAMHKKFF 114 (117)
Q Consensus 84 yvkKL~~ak~RV~~vnniLq~~Q~RL~rl~~ 114 (117)
|.+-..-+.-||...+.....+...+.|||.
T Consensus 71 ~~~~~~l~dEKv~lA~~~~dlvdkhirrLD~ 101 (104)
T 4afl_A 71 YGKCKEFGDDKVQLAMQTYEMVDKHIRRLDT 101 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444556788888888888888888874
No 88
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=32.74 E-value=73 Score=18.32 Aligned_cols=30 Identities=10% Similarity=0.178 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy460 41 DLLDEKFRATRASQLELRLQIEALTSQLDK 70 (117)
Q Consensus 41 ~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~ 70 (117)
.||+.+|...-.--.+|..+..+|.+.|..
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 589999999999999999999988776654
No 89
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=32.68 E-value=1e+02 Score=20.20 Aligned_cols=19 Identities=16% Similarity=0.357 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q psy460 35 LIKPTVDLLDEKFRATRAS 53 (117)
Q Consensus 35 lL~P~I~~lD~~V~~tr~S 53 (117)
-++--|+++|.++-..-.-
T Consensus 21 ~lR~~ID~ID~~Ll~LL~~ 39 (91)
T 1ybz_A 21 LLRKEIDKIDNQIISLLKK 39 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566677777766655543
No 90
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=32.57 E-value=1.4e+02 Score=21.52 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=21.9
Q ss_pred HHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460 30 EGLLGLIKPTVDLLDEKF-RATRASQLELRLQIEALTSQLDKISA 73 (117)
Q Consensus 30 ~GL~~lL~P~I~~lD~~V-~~tr~SQ~eL~~qId~L~~eL~~l~e 73 (117)
+.|..-|.|..+++=.++ .++..-+.+|...++.+-..|.-..+
T Consensus 76 ~~l~~~L~P~t~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~ 120 (165)
T 1gs9_A 76 SELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRG 120 (165)
T ss_dssp HHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555544432222 24444555666666666655555544
No 91
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=31.96 E-value=98 Score=19.55 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHH
Q psy460 52 ASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQT 104 (117)
Q Consensus 52 ~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~ 104 (117)
.|-.+|..+|..|-.||-++......-=.+ .--.++-.+|+.|.-|..+|..
T Consensus 12 ~s~~EL~~~l~elk~ELf~LR~q~atggql-~n~~~ir~vRr~IARi~Tvl~e 63 (71)
T 1vq8_V 12 MTPAEREAELDDLKTELLNARAVQAAGGAP-ENPGRIKELRKAIARIKTIQGE 63 (71)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCCC-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cChHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999998743220112 1235778899999999998864
No 92
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=30.57 E-value=71 Score=24.07 Aligned_cols=51 Identities=8% Similarity=0.098 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHH
Q psy460 52 ASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQT 104 (117)
Q Consensus 52 ~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~ 104 (117)
.|-.||.++|++|-.||-+|.... .-=.+ .--.++-.+|+.|.-|..+|..
T Consensus 73 lS~eEL~ekL~eLKkELFnLRfQk-ATGQL-eNpsrIR~VRRdIARIkTVLrE 123 (173)
T 3bbo_Z 73 KTTEQLQEEVVDLKGELFMLRLQK-SARNE-FKSSDFRRMKKQVARMLTVKRE 123 (173)
T ss_dssp SCHHHHHHHHHHHTTHHHHHHHHH-HHCCC-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HhcCC-CCchHHHHHHHHHHHHHHHHHH
Confidence 377899999999999999998632 21112 2334788899999999999864
No 93
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=30.48 E-value=81 Score=18.13 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 40 VDLLDEKFRATRASQLELRLQIEALTSQLD 69 (117)
Q Consensus 40 I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~ 69 (117)
..||+.+|.....--.+|..+..+|.+-|.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 468999999988888888888888865544
No 94
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=29.93 E-value=1.3e+02 Score=20.22 Aligned_cols=34 Identities=9% Similarity=0.186 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy460 38 PTVDLLDEKFRATRASQLELRLQIEALTSQLDKI 71 (117)
Q Consensus 38 P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l 71 (117)
-+++-|+.++.....+-..|..++..+...+..+
T Consensus 88 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~ 121 (133)
T 1fxk_C 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKL 121 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444444444444444433
No 95
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=29.79 E-value=1.5e+02 Score=20.92 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q psy460 44 DEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKKF 113 (117)
Q Consensus 44 D~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl~ 113 (117)
=.++..+..|.-....+++++..+|..|.. -.++=+-.+.-+--..+||..++--+=-+-+.|+-|.
T Consensus 10 lK~L~~veksv~~~~kkl~~~~~el~~iek---GFL~kel~~eal~kldKrik~~~E~~MK~LE~lDsl~ 76 (114)
T 1hx1_B 10 LKKLKHLEKSVEKIADQLEELNKELTGIQQ---GFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLI 76 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345666677777777799999999999966 4444343333333446888888877766666665543
No 96
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=27.57 E-value=1.4e+02 Score=19.80 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q psy460 42 LLDEKFRATRASQLELRLQIEALTSQLDKISAEQ 75 (117)
Q Consensus 42 ~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q 75 (117)
++..+|.....-=..|+.+|+.|..|+..|...-
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666778888888888888777643
No 97
>2yxy_A Hypothetical conserved protein, GK0453; alpha and beta proteins (A+B) class, structural GENO unknown function, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=27.20 E-value=56 Score=23.16 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhH
Q psy460 52 ASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQ 93 (117)
Q Consensus 52 ~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~ 93 (117)
.|+.||++.|..|.++-++-... ...=.++.|-+|..=||-
T Consensus 14 MS~~EL~~EI~~L~ekarKAEq~-G~~nE~aV~erK~~mAks 54 (115)
T 2yxy_A 14 MTKEELQQEIAMLTEKARKAEQM-GMVNEYAVYERKIAMAKA 54 (115)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHHHHHHH
Confidence 46789999999998888776543 233357888888876653
No 98
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=26.73 E-value=52 Score=23.76 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhH
Q psy460 51 RASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQ 93 (117)
Q Consensus 51 r~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~ 93 (117)
..|+.||++.|..|.++-++-... ...=.++.|-+|..=||-
T Consensus 31 eMS~~EL~~EI~~L~EKaRKAEq~-Gi~NE~aV~erKi~mAkS 72 (128)
T 1sf9_A 31 QMTPHELNTEIALLSEKARKAEQH-GIINELAVLERKITMAKA 72 (128)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHHHHHHH
Confidence 346789999999999888876543 233357888888877664
No 99
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.51 E-value=2.5e+02 Score=22.55 Aligned_cols=44 Identities=14% Similarity=-0.008 Sum_probs=31.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy460 30 EGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAE 74 (117)
Q Consensus 30 ~GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~ 74 (117)
+-+.. |+..|...+++|+..+..-..++.+|++|.+.+..+...
T Consensus 12 ~~~~~-~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 12 EEVRI-LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 466777777888877777777888888888877777653
No 100
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=26.41 E-value=59 Score=21.96 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460 48 RATRASQLELRLQIEALTSQLDKISA 73 (117)
Q Consensus 48 ~~tr~SQ~eL~~qId~L~~eL~~l~e 73 (117)
...+....+|+.++..+.+|++++.+
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45566777888899999999988855
No 101
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.26 E-value=95 Score=17.61 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 41 DLLDEKFRATRASQLELRLQIEALTSQL 68 (117)
Q Consensus 41 ~~lD~~V~~tr~SQ~eL~~qId~L~~eL 68 (117)
.||+.+|...-.--.+|..+.++|.+-|
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5789999988888888888887775543
No 102
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.11 E-value=2.8e+02 Score=22.94 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q psy460 38 PTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKKF 113 (117)
Q Consensus 38 P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl~ 113 (117)
..|-++|++-+.++..=.+|+.+.-.++.++.++.. ..-+...-..+....+.++..+...+..+++.+..+-
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRK---KGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---SCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888888888777888888888888776543 2345667777888888888888888888888887653
No 103
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=25.98 E-value=1.5e+02 Score=22.46 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=31.8
Q ss_pred HHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy460 32 LLGLIK---PTVDLLDEKFRATRASQLELRLQIEALTSQLDKIS 72 (117)
Q Consensus 32 L~~lL~---P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~ 72 (117)
||.+|+ +.+++|+++|.++-.|..+......+.+.+..+..
T Consensus 146 Ly~~Lk~k~~~~~~l~eki~~vN~~y~~~~~~FN~yTk~yN~~~ 189 (199)
T 2ap3_A 146 LFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQ 189 (199)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788887 88999999999999999999855555555544444
No 104
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=25.73 E-value=74 Score=20.70 Aligned_cols=34 Identities=18% Similarity=0.112 Sum_probs=21.8
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhh
Q psy460 81 LDSYTRKLVDAQQKISIVGNILQTTQVAMHKKFF 114 (117)
Q Consensus 81 Ld~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl~~ 114 (117)
|+..-+-|.+.-.+|-.++..|+.+..|+.+|-+
T Consensus 53 ld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~ 86 (87)
T 1l4a_D 53 IGSQNRQVDRIQQKAESNESRIDEANKKATKLLK 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444445556677788888888888887643
No 105
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=25.54 E-value=37 Score=21.83 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=26.0
Q ss_pred cCCCChhHHHHHHHH-hhHHHHHHHHHHHHH
Q psy460 76 QTAVPLDSYTRKLVD-AQQKISIVGNILQTT 105 (117)
Q Consensus 76 ~~p~dLd~yvkKL~~-ak~RV~~vnniLq~~ 105 (117)
...++|+.-+.+|.- -|||+.-|=|+|..+
T Consensus 28 ~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~i 58 (76)
T 1cf7_A 28 DGVLDLKLAADTLAVRQKRRIYDITNVLEGI 58 (76)
T ss_dssp TTEEEHHHHHHHTTTCCTHHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHhCCccceehhhHHHHHhHh
Confidence 456889998888887 899999999999875
No 106
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=25.53 E-value=97 Score=17.46 Aligned_cols=28 Identities=7% Similarity=0.202 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 41 DLLDEKFRATRASQLELRLQIEALTSQL 68 (117)
Q Consensus 41 ~~lD~~V~~tr~SQ~eL~~qId~L~~eL 68 (117)
.||+.+|...-.--.+|..+..+|.+-|
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5889999998888888888888775543
No 107
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=25.31 E-value=50 Score=20.45 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHH
Q psy460 53 SQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQ 103 (117)
Q Consensus 53 SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq 103 (117)
|-.||..+|..|-.||-++.... +.=.++ --.++-.+|+-|.-|..+|.
T Consensus 10 s~~EL~~~l~elk~Elf~LR~q~-atgql~-n~~~ir~vRr~IARi~Tvl~ 58 (63)
T 3r8s_Y 10 SVEELNTELLNLLREQFNLRMQA-ASGQLQ-QSHLLKQVRRDVARVKTLLN 58 (63)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHH-HTTCCS-CGGGTHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HhCCCc-CcHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999988733 211222 23566778888888887764
No 108
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=25.18 E-value=92 Score=20.33 Aligned_cols=16 Identities=13% Similarity=0.324 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhh
Q psy460 56 ELRLQIEALTSQLDKI 71 (117)
Q Consensus 56 eL~~qId~L~~eL~~l 71 (117)
+||.+||.+..+|-.|
T Consensus 12 ~lR~~ID~iD~~il~L 27 (101)
T 3ret_A 12 DIREAIDRIDLDIVQA 27 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555554444443
No 109
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=25.15 E-value=1e+02 Score=17.50 Aligned_cols=26 Identities=4% Similarity=0.128 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 41 DLLDEKFRATRASQLELRLQIEALTS 66 (117)
Q Consensus 41 ~~lD~~V~~tr~SQ~eL~~qId~L~~ 66 (117)
.||+.+|...-.--.+|..+..+|.+
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 57888888887777777776666644
No 110
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.11 E-value=1.3e+02 Score=26.38 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=29.1
Q ss_pred cCCCCCCCCCCchHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 12 ADDKTEDFCDNPTQDTIAEGLL----GLIKPTVDLLDEKFRATRASQLELRLQIEALTSQL 68 (117)
Q Consensus 12 ~~~~~~~~~~~p~rd~La~GL~----~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL 68 (117)
+||.-.-.|+..=| -.|++ .=|...|.+|=+++....++=++-.+....+.++|
T Consensus 37 aDeDwGvkCPSGCr---LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~L 94 (562)
T 3ghg_A 37 SDEDWNYKCPSGCR---MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEIL 94 (562)
T ss_dssp CSSSBTTEEECHHH---HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccCCCCCcccc---hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence 45555566665555 12222 23556666776666666555555555555554444
No 111
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=25.03 E-value=5.8e+02 Score=26.95 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHH
Q psy460 40 VDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTT 105 (117)
Q Consensus 40 I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~ 105 (117)
+.+++++...++.--.+.+..|.+|.+.|.++.+. ++..+++-...+..+..+...|+.+
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~------~~~~~~ek~~L~~e~~~~~~kl~rA 2075 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEE------YATLIRETEQIKTESSKVKNKVDRS 2075 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554455556666666666666654 4444444444444444444444433
No 112
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.61 E-value=1.2e+02 Score=17.99 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy460 39 TVDLLDEKFRATRASQLELRLQIEALTSQLDKISAE 74 (117)
Q Consensus 39 ~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~ 74 (117)
-|+++|..|.-|+. +|..|...|+.|.+.
T Consensus 10 kI~kVdrEI~Kte~-------kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 10 NMDRVDREITMVEQ-------QISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 35666777766665 666666666666554
No 113
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=24.54 E-value=2.3e+02 Score=21.41 Aligned_cols=58 Identities=10% Similarity=0.165 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhHHHhc----CCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhh
Q psy460 58 RLQIEALTSQLDKISAEQQ----TAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKKFFM 115 (117)
Q Consensus 58 ~~qId~L~~eL~~l~e~q~----~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl~~~ 115 (117)
+.+++....+++++..... ..-+++..-..+..++..+.....-|..++..+......
T Consensus 90 ~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~ 151 (369)
T 4dk0_A 90 KTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETN 151 (369)
T ss_dssp HHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443321 223677778888888888888888888888777766544
No 114
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=24.20 E-value=1.5e+02 Score=19.06 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=20.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 32 LLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLD 69 (117)
Q Consensus 32 L~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~ 69 (117)
-+....-+|++|..-|-.-+.-=..|..++..|.+.|+
T Consensus 22 klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 22 RLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777776655533333334444433333
No 115
>1r6f_A Virulence-associated V antigen; coiled-coil, protein binding; 2.17A {Yersinia pestis} SCOP: e.46.1.1
Probab=24.14 E-value=96 Score=25.30 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=34.3
Q ss_pred HHHhhhHHH--HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhHHHh
Q psy460 32 LLGLIKPTV--DLLDEKFRATRAS--------QLELRLQIEALTSQLDKISAEQ 75 (117)
Q Consensus 32 L~~lL~P~I--~~lD~~V~~tr~S--------Q~eL~~qId~L~~eL~~l~e~q 75 (117)
++.+..-.+ +++|+.|-.+... -.+|+++++.|+.||+-+.--|
T Consensus 96 fLav~~~slt~dR~DddVi~a~~~~m~~~~~KR~~lk~eL~~LTaeLKIysVIQ 149 (310)
T 1r6f_A 96 FMAVMHFSLTADRIDDDILKVIVDSMNHHGDARSKLREELAELTAELKIYSVIQ 149 (310)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCcccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 566666677 7888888776553 4689999999999999887654
No 116
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=24.07 E-value=1.9e+02 Score=20.27 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=38.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q psy460 27 TIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQ 75 (117)
Q Consensus 27 ~La~GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q 75 (117)
....-+.||+-.+=..++.+|..-+.-=++..+.|.++-+--+|+.|.|
T Consensus 48 ~~~~~l~Gl~i~v~~~~~~kv~en~~~L~QIQ~ei~s~rd~hkR~~E~Q 96 (115)
T 1ezj_A 48 EMTFNVCGLILSAEKSSARKVDENKQLLKQIQESVESFRDIYKRFSEYQ 96 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4555688999999999999999888877777778888776666776654
No 117
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=24.03 E-value=1.6e+02 Score=22.99 Aligned_cols=37 Identities=5% Similarity=0.003 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy460 35 LIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKI 71 (117)
Q Consensus 35 lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l 71 (117)
=+.|.+++|...++.+|..+.+.+.++.++..+|+..
T Consensus 221 ~~~~~~~~l~~~l~~~r~~~~~~~~~~~~~~~~l~~~ 257 (385)
T 2q13_A 221 QLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVA 257 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5788888888888888888888888888887777654
No 118
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=23.96 E-value=1e+02 Score=20.06 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Q psy460 48 RATRASQLELRLQIEALTSQLDKIS 72 (117)
Q Consensus 48 ~~tr~SQ~eL~~qId~L~~eL~~l~ 72 (117)
-++..+..+|..+|++|.+||.=+.
T Consensus 59 D~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 59 DNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788999999999999987543
No 119
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=23.92 E-value=1.1e+02 Score=21.11 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=33.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy460 27 TIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKI 71 (117)
Q Consensus 27 ~La~GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l 71 (117)
.+...+..+|+--.+++-++|.......++|+.+|++|..++...
T Consensus 14 ~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 14 RLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344457788873335888899999998999999999988776654
No 120
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=23.74 E-value=2.1e+02 Score=20.74 Aligned_cols=68 Identities=6% Similarity=0.094 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcC----CCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy460 45 EKFRATRASQLELRLQIEALTSQLDKISAEQQT----AVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKK 112 (117)
Q Consensus 45 ~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~----p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl 112 (117)
.++...+..-...+.+++....++.+....... .-+++..-..+..++.++.....-|..++.++.+.
T Consensus 60 ~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~ 131 (277)
T 2f1m_A 60 ATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYT 131 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344444444444445566666666666544321 22456666677777777777777777777766543
No 121
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.70 E-value=1.9e+02 Score=20.28 Aligned_cols=56 Identities=18% Similarity=0.145 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy460 51 RASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKK 112 (117)
Q Consensus 51 r~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl 112 (117)
+....+|..+|+.+..|+-.+... |...=-|+-.+++.+..+-.-+...|.++.+|
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~e------l~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHE------LIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667777777777666654 55555555556666655555555556655554
No 122
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=23.68 E-value=1.1e+02 Score=17.36 Aligned_cols=28 Identities=7% Similarity=0.076 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 41 DLLDEKFRATRASQLELRLQIEALTSQL 68 (117)
Q Consensus 41 ~~lD~~V~~tr~SQ~eL~~qId~L~~eL 68 (117)
.||+.+|...-.--.+|..+..+|.+-|
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5788888888887778887777775433
No 123
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=23.49 E-value=1.1e+02 Score=20.26 Aligned_cols=40 Identities=13% Similarity=0.256 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHH
Q psy460 55 LELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQK 94 (117)
Q Consensus 55 ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~R 94 (117)
.+|-..|+.+.+++..+.+....--.+..+++-|.++=++
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl~~ 76 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIER 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777766544444566666666665443
No 124
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=23.48 E-value=2.2e+02 Score=20.86 Aligned_cols=55 Identities=4% Similarity=-0.034 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q psy460 53 SQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKKF 113 (117)
Q Consensus 53 SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl~ 113 (117)
.-..|+..+..|...++++.+. +...-+-+-..+-=+.++|--+..+++++.++.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeee------l~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEV------IALKNKNTERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555443 444444444445555555555666666665553
No 125
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=23.33 E-value=11 Score=33.09 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=20.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHH
Q psy460 29 AEGLLGLIKPTVDLLDEKFRATRA 52 (117)
Q Consensus 29 a~GL~~lL~P~I~~lD~~V~~tr~ 52 (117)
.=||.|||=|.|..+|+|+..+..
T Consensus 25 ~l~l~GLLPp~v~t~e~Q~~r~~~ 48 (555)
T 1gq2_A 25 QLNIHGLLPPCFLGQDAQVYSILK 48 (555)
T ss_dssp HTTCTTSSCSCBCCHHHHHHHHHH
T ss_pred HCCCccCCCCCcCCHHHHHHHHHH
Confidence 347999999999999999888765
No 126
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=23.03 E-value=1.6e+02 Score=19.97 Aligned_cols=55 Identities=24% Similarity=0.250 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHH---HHHHHhhHHHHHHHHHHHHHHHHHH
Q psy460 52 ASQLELRLQIEALTSQLDKISAEQQTAVPLDSYT---RKLVDAQQKISIVGNILQTTQVAMH 110 (117)
Q Consensus 52 ~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yv---kKL~~ak~RV~~vnniLq~~Q~RL~ 110 (117)
.-|.+|+.++-+|..|+..++- |+. +.-|+ +|+.-...-+..+|..|...+...+
T Consensus 23 ~~~~~lk~E~~~lk~E~~stSa-QDe---FAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~ 80 (93)
T 3sjb_C 23 KKYLAKVKERHELKEFNNSISA-QDN---YAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQ 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCT-TTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccch-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666677666666654 321 22222 2333334444445555555444443
No 127
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=22.89 E-value=1.5e+02 Score=18.84 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 39 TVDLLDEKFRATRASQLELRLQIEALTSQLD 69 (117)
Q Consensus 39 ~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~ 69 (117)
-|..|..+.+....--..|+.+.+.|..+|.
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555444444455555555555443
No 128
>1bgf_A STAT-4; transcription factor, regulation, DNA-binding; 1.45A {Mus musculus} SCOP: a.90.1.1
Probab=22.53 E-value=2e+02 Score=20.00 Aligned_cols=70 Identities=14% Similarity=0.201 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHH
Q psy460 23 PTQDTIAEGLLGLIKPTVDLLDEKFRA-TRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISI 97 (117)
Q Consensus 23 p~rd~La~GL~~lL~P~I~~lD~~V~~-tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~ 97 (117)
|..+.+|.. +|.-.|.+||.+... +.....-++-.|-+-+..++..- +..|..|...|+.++.--+|+..
T Consensus 48 ~~~e~~A~~---l~~~Ll~eL~~~~~~~~~e~~fL~q~~L~~~~~~~q~~y--~~nP~~L~~~i~~~L~~E~~iv~ 118 (124)
T 1bgf_A 48 SNNETMATI---LLQNLLIQLDEQLGRVSKEKNLLLIHNLKRIRKVLQGKF--HGNPMHVAVVISNCLREERRILA 118 (124)
T ss_dssp TTCHHHHHH---HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHH---HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHh--ccChHHHHHHHHHHHHHHHHHHH
Confidence 333455554 556678888887654 33333445555555555555432 35799999999999999888864
No 129
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.35 E-value=57 Score=20.46 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhH----HHhcCCCChhHHHHHH
Q psy460 56 ELRLQIEALTSQLDKIS----AEQQTAVPLDSYTRKL 88 (117)
Q Consensus 56 eL~~qId~L~~eL~~l~----e~q~~p~dLd~yvkKL 88 (117)
+|+.|+.+|.+|.++++ ++|.+-=+|..-|+|+
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665554 3333333444445554
No 130
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*
Probab=22.33 E-value=13 Score=32.83 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHH
Q psy460 29 AEGLLGLIKPTVDLLDEKFRATRA 52 (117)
Q Consensus 29 a~GL~~lL~P~I~~lD~~V~~tr~ 52 (117)
.=||.|||=|.|..+|+++..+..
T Consensus 61 ~l~L~GLLPp~v~t~e~Q~~r~~~ 84 (605)
T 1o0s_A 61 YLGLHGLLPPAFMTQEQQAYRVIT 84 (605)
T ss_dssp HTTCTTTSCSCCCCHHHHHHHHHH
T ss_pred HCCCCcCCCCCcCCHHHHHHHHHH
Confidence 347999999999999999888766
No 131
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.33 E-value=2.5e+02 Score=21.06 Aligned_cols=31 Identities=10% Similarity=0.232 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy460 42 LLDEKFRATRASQLELRLQIEALTSQLDKIS 72 (117)
Q Consensus 42 ~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~ 72 (117)
+|+..+..+......|..++.+|..|+..+.
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k 76 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALK 76 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555543
No 132
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=22.29 E-value=1.9e+02 Score=19.78 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.7
Q ss_pred hHHHHHHHHH-HhhhHHHHHHHHHH
Q psy460 24 TQDTIAEGLL-GLIKPTVDLLDEKF 47 (117)
Q Consensus 24 ~rd~La~GL~-~lL~P~I~~lD~~V 47 (117)
|++.+++||| +||.-.|.++=.++
T Consensus 7 t~~~~s~~Iy~nLl~~~i~dIv~~e 31 (99)
T 3mhs_C 7 TIDSISNGILNNLLTTLIQDIVARE 31 (99)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999 89999998887664
No 133
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=22.13 E-value=1.8e+02 Score=19.25 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHH
Q psy460 41 DLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISI 97 (117)
Q Consensus 41 ~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~ 97 (117)
++++.++.....--.++.+.|.+|..-+..+.+. |+-|-.+|..++.++..
T Consensus 26 e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~e------ld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 26 EQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDS------RDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555544432 55555455444444333
No 134
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=21.84 E-value=2.2e+02 Score=20.26 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy460 41 DLLDEKFRATRASQLELRLQIEALTSQLDKIS 72 (117)
Q Consensus 41 ~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~ 72 (117)
+++....+..+....+|.-+|..|..+-+++.
T Consensus 10 e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~ 41 (179)
T 2gd5_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVK 41 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788888888888888877666653
No 135
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=21.73 E-value=64 Score=21.23 Aligned_cols=51 Identities=12% Similarity=0.231 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh---cCCCChhHHHHH
Q psy460 37 KPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQ---QTAVPLDSYTRK 87 (117)
Q Consensus 37 ~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q---~~p~dLd~yvkK 87 (117)
-|.|+-+|..+-++..-=..++..|-++..+..-|.+.- .+|-|=.+||+|
T Consensus 7 ~nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ag~ip~AP~DG~~YVrk 60 (74)
T 1avy_A 7 TNKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRK 60 (74)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCEEEE
T ss_pred cchhcccccchhhhheeeccccchhhhhhhhhHHHHhcCCCCCCCCCCceeEEe
Confidence 478888888887777766777777877777777765521 133344567654
No 136
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.72 E-value=3.2e+02 Score=22.09 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q psy460 40 VDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHK 111 (117)
Q Consensus 40 I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~r 111 (117)
...++...+..+++..+.+++++.+.++..++... ++..=+++...++-......-++..++.+.+
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~------~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 518 QAFKLRETQARRTEADAKQKETEDLEQENIALEKQ------LDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHH------HhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
No 137
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=21.68 E-value=2.6e+02 Score=20.96 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy460 45 EKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMH 110 (117)
Q Consensus 45 ~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~ 110 (117)
+.|....--|.+|...+..|.....++.+ .|++++.|-.-+-..+..+..|..+...++.++.
T Consensus 71 d~vE~~~~~~~~l~~~~~~l~~~w~~l~~---~~~~~~~~~~l~~~~~~~l~~v~~~~~~~~~~l~ 133 (214)
T 1kmi_Z 71 NSVEASQPHQDQMEKSAKALTQRWDDWFA---DPIDLADARELVTDTRQFLADVPAHTSFTNAQLL 133 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT---SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777777777666666655 4666666655554555555555555555554443
No 138
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=21.09 E-value=1.3e+02 Score=17.10 Aligned_cols=28 Identities=7% Similarity=0.125 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 41 DLLDEKFRATRASQLELRLQIEALTSQL 68 (117)
Q Consensus 41 ~~lD~~V~~tr~SQ~eL~~qId~L~~eL 68 (117)
.||+.+|...-.--.+|..+..+|.+-|
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 5778888877776666666666665443
No 139
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=21.01 E-value=1.9e+02 Score=19.89 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 35 LIKPTVDLLDEKFRATRASQLELRLQIEAL 64 (117)
Q Consensus 35 lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L 64 (117)
+|.--+++++.++...+.....|...|+.+
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333333333
No 140
>3efd_K KCSA; helix bundle, C-terminus, immune system; 2.60A {Escherichia coli}
Probab=20.17 E-value=45 Score=18.37 Aligned_cols=14 Identities=7% Similarity=-0.119 Sum_probs=11.3
Q ss_pred HHHHHHHHhhhhhc
Q psy460 103 QTTQVAMHKKFFMG 116 (117)
Q Consensus 103 q~~Q~RL~rl~~~~ 116 (117)
...++|.+||.+|+
T Consensus 14 RALHeRFDRLEr~l 27 (30)
T 3efd_K 14 RALHERFDRLERML 27 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 56788999998886
No 141
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=20.07 E-value=3.6e+02 Score=21.95 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy460 39 TVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKK 112 (117)
Q Consensus 39 ~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl 112 (117)
.|-++|++-+.++..=.+|+.+.-.++.++.++.. ..-+...-..+....+.++..+...+..+++.+..+
T Consensus 31 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 31 KVLELDKRRREIIKRLEALRSERNKLSKEIGKLKR---EGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGS---SCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777666666666666666665432 122344445566666777778888888777777654
Done!