Query psy460
Match_columns 117
No_of_seqs 54 out of 56
Neff 4.3
Searched_HMMs 13730
Date Fri Aug 16 21:04:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy460.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/460hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wa8a1 a.25.3.1 (A:1-99) ESAT 73.0 7.3 0.00053 23.4 9.8 71 41-112 8-78 (99)
2 d1wa8b1 a.25.3.1 (B:602-695) E 70.6 8.6 0.00063 23.2 10.4 71 41-112 8-78 (94)
3 d1r73a_ a.2.2.1 (A:) Ribosomal 60.7 12 0.00089 22.0 5.6 51 52-105 9-60 (66)
4 d2gycw1 a.2.2.1 (W:1-60) Ribos 58.5 8.5 0.00062 22.3 4.4 50 52-103 9-58 (60)
5 d1bgfa_ a.90.1.1 (A:) Transcri 41.2 42 0.0031 21.9 6.4 67 26-97 51-118 (124)
6 d1vqov1 a.2.2.1 (V:1-65) Ribos 40.5 30 0.0022 20.0 5.9 52 52-104 11-62 (65)
7 d2zjrv1 a.2.2.1 (V:1-66) Ribos 40.4 15 0.0011 21.5 3.5 50 53-105 10-60 (66)
8 d1nkpa_ a.38.1.1 (A:) Myc prot 38.5 35 0.0026 20.2 5.4 32 40-71 54-85 (88)
9 d1seta1 a.2.7.1 (A:1-110) Sery 35.5 44 0.0032 20.4 8.6 69 39-112 29-97 (110)
10 d2d8da1 a.130.1.1 (A:3-82) Cho 33.9 40 0.0029 19.5 5.0 16 37-52 7-22 (80)
11 d2elba1 a.238.1.1 (A:6-273) DC 32.4 68 0.005 21.7 7.7 41 34-74 215-255 (268)
12 d1pj3a2 c.58.1.3 (A:21-279) Mi 31.0 1.8 0.00013 32.8 -2.5 34 30-70 28-61 (259)
13 d1cf7a_ a.4.5.17 (A:) Cell cyc 30.3 13 0.00094 22.3 2.0 37 69-105 16-53 (67)
14 d1ybza1 a.130.1.1 (A:2-75) mon 30.1 48 0.0035 19.2 5.2 17 36-52 6-22 (74)
15 d1dova_ a.24.9.1 (A:) alpha-ca 29.4 79 0.0058 21.5 7.0 28 15-42 30-57 (181)
16 d1o0sa2 c.58.1.3 (A:2-295) Mit 28.5 2.2 0.00016 32.8 -2.4 24 29-52 60-83 (294)
17 d1gq2a2 c.58.1.3 (A:23-279) Mi 27.7 2 0.00014 32.5 -2.8 24 29-52 25-48 (257)
18 d1ivsa1 a.2.7.3 (A:797-862) Va 27.6 50 0.0036 18.6 8.2 59 45-103 4-63 (66)
19 d2azeb1 e.63.1.2 (B:201-301) T 27.3 68 0.005 20.0 5.7 35 40-74 3-37 (101)
20 d2bbha1 d.328.1.1 (A:13-244) M 27.1 68 0.0049 21.2 5.7 33 83-115 194-226 (232)
21 d1fxkc_ a.2.5.1 (C:) Prefoldin 26.2 69 0.0051 19.8 5.5 26 39-64 89-114 (133)
22 d2otaa1 a.284.1.1 (A:7-68) Hyp 26.0 19 0.0014 21.6 2.1 26 58-83 3-28 (62)
23 d1fyja_ a.16.1.3 (A:) Multifun 25.3 58 0.0043 18.8 4.3 41 56-96 4-44 (57)
24 d1t72a_ a.7.12.1 (A:) Phosphat 25.3 84 0.0062 20.4 8.7 47 27-73 15-61 (215)
25 d2juza1 a.284.1.1 (A:1-72) Unc 24.6 28 0.002 21.3 2.8 26 58-83 9-34 (72)
26 d2qtia1 a.284.1.1 (A:8-72) Unc 24.3 21 0.0015 21.5 2.1 26 58-83 2-27 (65)
27 d1nkpb_ a.38.1.1 (B:) Max prot 22.9 69 0.005 18.6 5.0 31 40-70 49-79 (83)
28 d1alua_ a.26.1.1 (A:) Interleu 21.6 1.1E+02 0.0082 20.5 6.1 88 17-109 52-156 (166)
29 d1ecma_ a.130.1.1 (A:) Chorism 21.2 77 0.0056 18.5 5.2 17 36-52 6-22 (91)
30 d2f6mb1 a.2.17.2 (B:15-118) Va 21.0 64 0.0046 20.6 4.2 61 26-88 24-90 (104)
31 d1ydxa1 d.287.1.2 (A:1-193) Bi 20.5 92 0.0067 19.1 5.5 29 40-68 153-181 (193)
No 1
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=73.04 E-value=7.3 Score=23.43 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy460 41 DLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKK 112 (117)
Q Consensus 41 ~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl 112 (117)
+.|.......+..-.+|+..+.+|...+..|... =.-.--+.|.......+.....++..|..+.+.|...
T Consensus 8 ~~l~~~A~~~~~~~~~l~~~l~~l~~~v~~l~~~-W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~L~~a 78 (99)
T d1wa8a1 8 ATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQ-WRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQA 78 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777788888999998888888642 2333457899999999999999999999999988764
No 2
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=70.56 E-value=8.6 Score=23.18 Aligned_cols=71 Identities=11% Similarity=0.100 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy460 41 DLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKK 112 (117)
Q Consensus 41 ~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl 112 (117)
..++..+...+..-.+|...|++|...+..+...= .---=..|......-......+|.+|..+.+.|...
T Consensus 8 ~~l~~~a~~i~~~~~~i~~~l~~L~~~~~~l~~~W-~G~A~~af~~~~~~W~~~~~~l~~~L~~i~~~l~~~ 78 (94)
T d1wa8b1 8 AGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAW-GGSGSEAYQGVQQKWDATATELNNALQNLARTISEA 78 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG-SCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788888888899999999999987532 223456799999999999999999999999888654
No 3
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]}
Probab=60.69 E-value=12 Score=21.96 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhcCCCCh-hHHHHHHHHhhHHHHHHHHHHHHH
Q psy460 52 ASQLELRLQIEALTSQLDKISAEQQTAVPL-DSYTRKLVDAQQKISIVGNILQTT 105 (117)
Q Consensus 52 ~SQ~eL~~qId~L~~eL~~l~e~q~~p~dL-d~yvkKL~~ak~RV~~vnniLq~~ 105 (117)
.|..+|...|..|-.||-++... .+.=.+ +| .++-.+|+.|+-+..++..-
T Consensus 9 ls~~eL~~~l~~l~~el~~LRfq-~~~gql~~~--~~i~~~Rk~IARi~Tvl~er 60 (66)
T d1r73a_ 9 YTDEELKNLLEEKKRQLMELRFQ-LAMGQLKNT--SLIKLTKRDIARIKTILRER 60 (66)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH-HHHTCCCCH--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCh--HHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999873 222223 34 67888999999999998764
No 4
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia coli [TaxId: 562]}
Probab=58.48 E-value=8.5 Score=22.26 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHH
Q psy460 52 ASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQ 103 (117)
Q Consensus 52 ~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq 103 (117)
.|-.+|...|..|..||-++.. |.+.=.++ --.++-.+|+.|+-|..++.
T Consensus 9 ls~~eL~~~l~~l~~el~~lRf-q~~~gql~-~~~~i~~~Rk~IARi~Tvl~ 58 (60)
T d2gycw1 9 KSVEELNTELLNLLREQFNLRM-QAASGQLQ-QSHLLKQVRRDVARVKTLLN 58 (60)
T ss_dssp SCHHHHHHHHHHHHHHHHHCCC-STTTCSSC-CHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHCCCC-chHHHHHHHHHHHHHHHHHh
Confidence 3678899999999999999987 44433443 23788899999999998875
No 5
>d1bgfa_ a.90.1.1 (A:) Transcription factor STAT-4 N-domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=41.21 E-value=42 Score=21.94 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHH
Q psy460 26 DTIAEGLLGLIKPTVDLLDEKF-RATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISI 97 (117)
Q Consensus 26 d~La~GL~~lL~P~I~~lD~~V-~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~ 97 (117)
+.+|.++ |.-.|.+|+.+. +.+..+..-++-.|.+-+..++..- +..|..|..+|+..+.--+||..
T Consensus 51 e~~a~~l---~~~ll~~L~~q~~~~~~e~~fl~~~~l~~~~~~~q~~y--~~nP~~L~~iI~~cL~~E~riv~ 118 (124)
T d1bgfa_ 51 ETMATIL---LQNLLIQLDEQLGRVSKEKNLLLIHNLKRIRKVLQGKF--HGNPMHVAVVISNCLREERRILA 118 (124)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHHHHHHHH
Confidence 4566554 455677777665 3344455556666666666666432 35899999999999999888865
No 6
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=40.52 E-value=30 Score=20.03 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHH
Q psy460 52 ASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQT 104 (117)
Q Consensus 52 ~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~ 104 (117)
.|-.+|..+|..|..||-++.--|..-=.++ --.++-..|+.|+-+..++..
T Consensus 11 ls~~eL~~~l~elk~El~~LR~~q~~~gql~-~~~~ik~~Rk~IARi~Tvl~e 62 (65)
T d1vqov1 11 MTPAEREAELDDLKTELLNARAVQAAGGAPE-NPGRIKELRKAIARIKTIQGE 62 (65)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCSSC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999973232211121 234677788999998888753
No 7
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=40.36 E-value=15 Score=21.49 Aligned_cols=50 Identities=10% Similarity=0.211 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhcCCCCh-hHHHHHHHHhhHHHHHHHHHHHHH
Q psy460 53 SQLELRLQIEALTSQLDKISAEQQTAVPL-DSYTRKLVDAQQKISIVGNILQTT 105 (117)
Q Consensus 53 SQ~eL~~qId~L~~eL~~l~e~q~~p~dL-d~yvkKL~~ak~RV~~vnniLq~~ 105 (117)
|-.+|...|..|-.||-++..-. +.=.| +| .++-.+|+-|+-|..++..-
T Consensus 10 s~~eL~~~l~~lk~elf~LRfq~-~tgql~n~--~~ik~~Rk~IARi~Tvl~er 60 (66)
T d2zjrv1 10 QATDFAKEIDARKKELMELRFQA-AAGQLAQP--HRVRQLRREVAQLNTVKAEL 60 (66)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHH-HHSCCCCH--HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHCCCcch--HHHHHHHHHHHHHHHHHHHH
Confidence 55788889999999998888632 22223 23 57788899999999988653
No 8
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.48 E-value=35 Score=20.19 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy460 40 VDLLDEKFRATRASQLELRLQIEALTSQLDKI 71 (117)
Q Consensus 40 I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l 71 (117)
|..|...+......-..|+.+.+.|..+|..+
T Consensus 54 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555444444444555555555555443
No 9
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=35.48 E-value=44 Score=20.40 Aligned_cols=69 Identities=9% Similarity=0.130 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q psy460 39 TVDLLDEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAMHKK 112 (117)
Q Consensus 39 ~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl 112 (117)
.|-++|.+.+..+..-.+|+.+--.++.++.+.... +.+....+.-..+..+..+...++.+++.+..+
T Consensus 29 ~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~-----~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 29 ALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPE-----EKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666665555555555555555443221 234566677777888888888888888887765
No 10
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=33.88 E-value=40 Score=19.50 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHH
Q psy460 37 KPTVDLLDEKFRATRA 52 (117)
Q Consensus 37 ~P~I~~lD~~V~~tr~ 52 (117)
+--|+++|.++-..-.
T Consensus 7 R~~ID~iD~~i~~Ll~ 22 (80)
T d2d8da1 7 RKEVDRVNREILRLLS 22 (80)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455554444433
No 11
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.42 E-value=68 Score=21.67 Aligned_cols=41 Identities=7% Similarity=0.008 Sum_probs=32.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy460 34 GLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAE 74 (117)
Q Consensus 34 ~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~ 74 (117)
.-|.|.++++...++..+......+..+.....++..-.+.
T Consensus 215 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (268)
T d2elba1 215 EQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVASDP 255 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 34788888888888888888888888887777777766654
No 12
>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.01 E-value=1.8 Score=32.79 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=26.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy460 30 EGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDK 70 (117)
Q Consensus 30 ~GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~ 70 (117)
=||.|||=|+|+.+|.+|..+.. +++++.+-|.+
T Consensus 28 l~l~GLLP~~v~tle~Qv~r~~~-------~~~~~~t~l~K 61 (259)
T d1pj3a2 28 LGLQGLLPPKIETQDIQALRFHR-------NLKKMTSPLEK 61 (259)
T ss_dssp TTCTTTSCSCCCCHHHHHHHHHH-------HHHHCCSHHHH
T ss_pred cCCccCCCCCccCHHHHHHHHHH-------HHHhcCCcHHH
Confidence 37999999999999999998887 55555444443
No 13
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.27 E-value=13 Score=22.30 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=28.6
Q ss_pred HhhHHHhcCCCChhHHHHHHHH-hhHHHHHHHHHHHHH
Q psy460 69 DKISAEQQTAVPLDSYTRKLVD-AQQKISIVGNILQTT 105 (117)
Q Consensus 69 ~~l~e~q~~p~dLd~yvkKL~~-ak~RV~~vnniLq~~ 105 (117)
.-+.+.....+||+.-+.+|.- -||||.-|=|+|..+
T Consensus 16 ~l~~~~~~~~~~L~~aa~~L~v~~kRRiYDI~NVLe~i 53 (67)
T d1cf7a_ 16 SLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGI 53 (67)
T ss_dssp HHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHH
T ss_pred HHHhhCCCCeeeHHHHHHHhcCcchhhHHHHHHHHhhh
Confidence 3344443456689999999987 589999999999876
No 14
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase {Pyrococcus furiosus [TaxId: 2261]}
Probab=30.08 E-value=48 Score=19.18 Aligned_cols=17 Identities=12% Similarity=0.319 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy460 36 IKPTVDLLDEKFRATRA 52 (117)
Q Consensus 36 L~P~I~~lD~~V~~tr~ 52 (117)
|+--|+.+|.++-..-.
T Consensus 6 lR~~ID~iD~~i~~Ll~ 22 (74)
T d1ybza1 6 LRKEIDKIDNQIISLLK 22 (74)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555444
No 15
>d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.41 E-value=79 Score=21.48 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=23.6
Q ss_pred CCCCCCCCchHHHHHHHHHHhhhHHHHH
Q psy460 15 KTEDFCDNPTQDTIAEGLLGLIKPTVDL 42 (117)
Q Consensus 15 ~~~~~~~~p~rd~La~GL~~lL~P~I~~ 42 (117)
-.+++|..|.|..+..|-.++|.-+.+=
T Consensus 30 ~~~dp~s~~~R~~lv~aaR~lLs~vt~l 57 (181)
T d1dova_ 30 FADDPCSSVKRGNMVRAARALLSAVTRL 57 (181)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCCChHhHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999887653
No 16
>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Probab=28.54 E-value=2.2 Score=32.79 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHH
Q psy460 29 AEGLLGLIKPTVDLLDEKFRATRA 52 (117)
Q Consensus 29 a~GL~~lL~P~I~~lD~~V~~tr~ 52 (117)
+=||.|||=|+|+.+|.+|..+..
T Consensus 60 ~l~L~GLLP~~v~tle~Qv~R~~~ 83 (294)
T d1o0sa2 60 YLGLHGLLPPAFMTQEQQAYRVIT 83 (294)
T ss_dssp HTTCTTTSCSCCCCHHHHHHHHHH
T ss_pred HcCCccCCCCCccCHHHHHHHHHH
Confidence 347999999999999999999887
No 17
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Probab=27.73 E-value=2 Score=32.49 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=21.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHH
Q psy460 29 AEGLLGLIKPTVDLLDEKFRATRA 52 (117)
Q Consensus 29 a~GL~~lL~P~I~~lD~~V~~tr~ 52 (117)
.=||.|||-|+|..+|.+|..+..
T Consensus 25 ~l~l~GLLP~~v~tle~Qv~r~~~ 48 (257)
T d1gq2a2 25 QLNIHGLLPPCFLGQDAQVYSILK 48 (257)
T ss_dssp HTTCTTSSCSCBCCHHHHHHHHHH
T ss_pred HcCCccCCCCCccCHHHHHHHHHH
Confidence 347999999999999999998887
No 18
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=27.58 E-value=50 Score=18.58 Aligned_cols=59 Identities=14% Similarity=0.100 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCCh-hHHHHHHHHhhHHHHHHHHHHH
Q psy460 45 EKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPL-DSYTRKLVDAQQKISIVGNILQ 103 (117)
Q Consensus 45 ~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dL-d~yvkKL~~ak~RV~~vnniLq 103 (117)
..+.-...-...+..+|+.+..-|..=++...+|.++ +.--.||.+....+..++..|.
T Consensus 4 ~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP~~Vv~~~k~kl~~~~~~~~~l~~~l~ 63 (66)
T d1ivsa1 4 EWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445556667777777777555555688887 4555555555555555554443
No 19
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.27 E-value=68 Score=20.05 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy460 40 VDLLDEKFRATRASQLELRLQIEALTSQLDKISAE 74 (117)
Q Consensus 40 I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~ 74 (117)
+..|-+.+.....--.+|.+.|..+.+.|+.+.++
T Consensus 3 ~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lted 37 (101)
T d2azeb1 3 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 37 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34566667777777778888888888888888764
No 20
>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}
Probab=27.11 E-value=68 Score=21.23 Aligned_cols=33 Identities=0% Similarity=0.012 Sum_probs=26.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhh
Q psy460 83 SYTRKLVDAQQKISIVGNILQTTQVAMHKKFFM 115 (117)
Q Consensus 83 ~yvkKL~~ak~RV~~vnniLq~~Q~RL~rl~~~ 115 (117)
....+|...|+.+..+-..+.-..+=+.+|.+.
T Consensus 194 ~~l~~i~~lrr~l~~lrr~l~p~revl~~L~r~ 226 (232)
T d2bbha1 194 ETVQRTHQLKRNLVELRKTIWPLREVLSSLYRD 226 (232)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456789999999999998888888888877653
No 21
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.17 E-value=69 Score=19.76 Aligned_cols=26 Identities=4% Similarity=0.164 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 39 TVDLLDEKFRATRASQLELRLQIEAL 64 (117)
Q Consensus 39 ~I~~lD~~V~~tr~SQ~eL~~qId~L 64 (117)
+++-++.++......-.+|..+|..+
T Consensus 89 A~~~l~~ri~~l~~~~~~l~~~~~~~ 114 (133)
T d1fxkc_ 89 AMESIKSQKNELESTLQKMGENLRAI 114 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333333333
No 22
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=26.05 E-value=19 Score=21.55 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhHHHhcCCCChhH
Q psy460 58 RLQIEALTSQLDKISAEQQTAVPLDS 83 (117)
Q Consensus 58 ~~qId~L~~eL~~l~e~q~~p~dLd~ 83 (117)
.+|+|.+-.||-...|..++|+||.-
T Consensus 3 ~~qvE~il~eli~vLeKh~Ap~DLSL 28 (62)
T d2otaa1 3 NERVEKIIQDLLDVLVKEEVTPDLAL 28 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchHH
Confidence 46899999999888887789999853
No 23
>d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.28 E-value=58 Score=18.76 Aligned_cols=41 Identities=10% Similarity=0.185 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhHHHhcCCCChhHHHHHHHHhhHHHH
Q psy460 56 ELRLQIEALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKIS 96 (117)
Q Consensus 56 eL~~qId~L~~eL~~l~e~q~~p~dLd~yvkKL~~ak~RV~ 96 (117)
.|.++|..--...|+|.......-++++.|++|+.-|...-
T Consensus 4 ~L~~~V~~QGd~VR~LK~~ka~k~~i~~aV~~LL~LK~~yk 44 (57)
T d1fyja_ 4 VLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYK 44 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 46677777777778887753344477899999998886543
No 24
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=25.26 E-value=84 Score=20.44 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy460 27 TIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISA 73 (117)
Q Consensus 27 ~La~GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e 73 (117)
.+-.-+..+..=+...++.-+++......++..++-....+++++..
T Consensus 15 ~l~~~l~~M~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~l~~ 61 (215)
T d1t72a_ 15 ETKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEV 61 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhHHHHHHHHH
Confidence 44555777777788888888887777667776665555555555544
No 25
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840 {Haemophilus influenzae [TaxId: 727]}
Probab=24.65 E-value=28 Score=21.31 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhHHHhcCCCChhH
Q psy460 58 RLQIEALTSQLDKISAEQQTAVPLDS 83 (117)
Q Consensus 58 ~~qId~L~~eL~~l~e~q~~p~dLd~ 83 (117)
.+|+|.+-.||-...|.-++|+||.-
T Consensus 9 ~~qvE~il~el~~vLeKh~Ap~DLSL 34 (72)
T d2juza1 9 DAQLSAIVNDMIAVLEKHKAPVDLSL 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchHH
Confidence 46889999998888887789999853
No 26
>d2qtia1 a.284.1.1 (A:8-72) Uncharacterized protein SO2176 {Shewanella oneidensis [TaxId: 70863]}
Probab=24.26 E-value=21 Score=21.49 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhHHHhcCCCChhH
Q psy460 58 RLQIEALTSQLDKISAEQQTAVPLDS 83 (117)
Q Consensus 58 ~~qId~L~~eL~~l~e~q~~p~dLd~ 83 (117)
.+|+|.+-.||-...|.-++|+||.-
T Consensus 2 ~~qvE~il~el~~vLeKH~Ap~DLSL 27 (65)
T d2qtia1 2 NTQVESLIAEILVVLEKHKAPTDLSL 27 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 46899999999888887789999853
No 27
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.86 E-value=69 Score=18.55 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy460 40 VDLLDEKFRATRASQLELRLQIEALTSQLDK 70 (117)
Q Consensus 40 I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~ 70 (117)
|..|..+++....-...|+.+.+.|..++..
T Consensus 49 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~ 79 (83)
T d1nkpb_ 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555566666666665544
No 28
>d1alua_ a.26.1.1 (A:) Interleukin-6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.56 E-value=1.1e+02 Score=20.53 Aligned_cols=88 Identities=20% Similarity=0.141 Sum_probs=50.2
Q ss_pred CCCCCCchH------HHHHHHHH---HhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCChh--
Q psy460 17 EDFCDNPTQ------DTIAEGLL---GLIKPTVDLL---DEKFRATRASQLELRLQIEALTSQLDKISAEQQTAVPLD-- 82 (117)
Q Consensus 17 ~~~~~~p~r------d~La~GL~---~lL~P~I~~l---D~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~q~~p~dLd-- 82 (117)
++-|..++- .-++.||. .+|+=+-..+ -..+++.+.+...|..-| .++++...+. .+++-.
T Consensus 52 ~dgC~~~gfn~e~CL~ri~~GL~~yq~lL~~l~~~~~~~~~~~~~l~~~~~~L~~~i---~qk~k~~~~~--~~~~pt~~ 126 (166)
T d1alua_ 52 KDGCFQSGFNEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFL---QKKAKNLDAI--TTPDPTTN 126 (166)
T ss_dssp GGTCSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHHHHHH---HHHTSSSCCC--CCCCHHHH
T ss_pred cCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH---HHHHhCcccc--cCCCCccc
Confidence 445666652 46889965 4455333333 455666667666665555 3355555432 233322
Q ss_pred -HHHHHHHHhh--HHHHHHHHHHHHHHHHH
Q psy460 83 -SYTRKLVDAQ--QKISIVGNILQTTQVAM 109 (117)
Q Consensus 83 -~yvkKL~~ak--~RV~~vnniLq~~Q~RL 109 (117)
.-..+|.... .|-..++.||.+.|+=+
T Consensus 127 ~~ll~~l~s~~~w~r~~t~hlILr~L~~FL 156 (166)
T d1alua_ 127 ASLLTKLQAQNQWLQDMTTHLILRSFKEFL 156 (166)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 2344555553 47789999999987643
No 29
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}
Probab=21.23 E-value=77 Score=18.50 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy460 36 IKPTVDLLDEKFRATRA 52 (117)
Q Consensus 36 L~P~I~~lD~~V~~tr~ 52 (117)
|+--|+++|.++-..-.
T Consensus 6 lR~~ID~iD~~i~~Ll~ 22 (91)
T d1ecma_ 6 LREKISALDEKLLALLA 22 (91)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445666666555544
No 30
>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.96 E-value=64 Score=20.62 Aligned_cols=61 Identities=10% Similarity=0.281 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH------hcCCCChhHHHHHH
Q psy460 26 DTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLDKISAE------QQTAVPLDSYTRKL 88 (117)
Q Consensus 26 d~La~GL~~lL~P~I~~lD~~V~~tr~SQ~eL~~qId~L~~eL~~l~e~------q~~p~dLd~yvkKL 88 (117)
|.||+ |++++ ++++.||...--=-.++.+-...+.+|-.+-+-+-.. ++..++++.|.+|-
T Consensus 24 d~LAe-lysII-~tLe~LEkAyikD~It~~eYt~~c~rLl~QyK~~~~~~~~~~v~~~f~~le~F~~~y 90 (104)
T d2f6mb1 24 ETLSE-IYSIV-ITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEINKHFQSIEAFADTY 90 (104)
T ss_dssp HHHHH-HHHHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHTCTTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HHHHH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhhhHHhhhccCCHHHHHHHH
Confidence 56666 66665 6889999887666678888888999988777765421 11235677777664
No 31
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=20.47 E-value=92 Score=19.13 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy460 40 VDLLDEKFRATRASQLELRLQIEALTSQL 68 (117)
Q Consensus 40 I~~lD~~V~~tr~SQ~eL~~qId~L~~eL 68 (117)
++.+|+++....+....|++..+.|-++|
T Consensus 153 l~~ld~~i~~~~~~i~~l~~~~~~ll~~l 181 (193)
T d1ydxa1 153 LSVFDERLENLASLIEINRKLRDEYAHKL 181 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666665555655666555554
Done!