RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy460
         (117 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.2 bits (65), Expect = 0.32
 Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 28/107 (26%)

Query: 12   ADDKTED---FC------DNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIE 62
            AD+  +D   F       +NP   TI  G     +   +     F      +L+     +
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708

Query: 63   ALTSQLDKISAEQQTAVPLDSYTRKLVDAQQKISIVGNILQTTQVAM 109
             +       +   +  + L + T                 Q TQ A+
Sbjct: 1709 EINEHSTSYTFRSEKGL-LSA-T-----------------QFTQPAL 1736


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.3 bits (54), Expect = 4.8
 Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 8/24 (33%)

Query: 60 QIEALTSQLDKISAEQQTAVPLDS 83
           ++ L + L K+ A        DS
Sbjct: 21 ALKKLQASL-KLYA------D-DS 36


>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics,
          joint center for structural genomics, J protein
          structure initiative, PSI; HET: PE8; 2.00A
          {Archaeoglobus fulgidus}
          Length = 293

 Score = 24.9 bits (55), Expect = 6.6
 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 14 DKTEDFCDNPTQDTIAEGLLGLIKPTVDL 42
          D +E   +   ++ I E LL  I+ T  L
Sbjct: 41 DVSEKALEA-AREQIPEELLSKIEFTTTL 68


>1yyc_A LEA protein, putative late embryogenesis abundant protein;
          structural genomics, protein structure initiative,
          CESG; NMR {Arabidopsis thaliana}
          Length = 174

 Score = 24.6 bits (53), Expect = 7.4
 Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 8/49 (16%)

Query: 14 DKTEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIE 62
          DK + F         AE L  +  P   + D  F+      ++   ++ 
Sbjct: 29 DKAKGF--------FAEKLANIPTPEATVDDVDFKGVTRDGVDYHAKVS 69


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.313    0.128    0.339 

Gapped
Lambda     K      H
   0.267   0.0763    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,543,731
Number of extensions: 79863
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 9
Length of query: 117
Length of database: 6,701,793
Length adjustment: 80
Effective length of query: 37
Effective length of database: 4,468,113
Effective search space: 165320181
Effective search space used: 165320181
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)