RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy460
         (117 letters)



>d2ciwa2 a.39.3.1 (A:120-298) Cloroperoxidase {Fungus
          (Caldariomyces fumago) [TaxId: 5474]}
          Length = 179

 Score = 24.4 bits (52), Expect = 3.3
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 16 TEDFCDNPTQDTIAEGLLGLIKPTVDLLDEKFRATRASQLELRLQIEALTSQLD 69
          + DF DN   D  AE      + ++D++  K     A   E+RLQ E+L+++LD
Sbjct: 2  SNDFIDNRNFD--AETF----QTSLDVVAGKTHFDYADMNEIRLQRESLSNELD 49


>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 75

 Score = 23.2 bits (50), Expect = 4.8
 Identities = 5/23 (21%), Positives = 14/23 (60%), Gaps = 2/23 (8%)

Query: 92  QQKISIVGNILQTTQVAMHKKFF 114
           +  IS++GN+  ++ +   ++ F
Sbjct: 1   RAIISLIGNVQHSSLIL--ERAF 21


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.128    0.339 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 357,319
Number of extensions: 13487
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 9
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.0 bits)