BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4600
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
+++ +GP GLGFSIVGG SP G + IYVKT+F G A++ G LK
Sbjct: 28 SITLERGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLK 73
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDT 93
S F ++ +G GLGFSI GG D+P GI++ I P G AA+ G L+ +
Sbjct: 5 SPEFEFEEITLERG--NSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVND 62
Query: 94 DYKISNKITTSEYS 107
N++ SE S
Sbjct: 63 CILRVNEVDVSEVS 76
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 102
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 40 TITTVSFTKGPGFKGLGFSIVGGKDSP--KGIMGIYVKTIFPTGQAADTGSLKE 91
T ++ T+GP GLGF+IVGG D GIYV I G AA G L+E
Sbjct: 9 TEEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQE 60
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 101
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 40 TITTVSFTKGPGFKGLGFSIVGGKDSP--KGIMGIYVKTIFPTGQAADTGSLKE 91
T ++ T+GP GLGF+IVGG D GIYV I G AA G L+E
Sbjct: 7 TEEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQE 58
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
Length = 120
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
S + TV KGP LG SI GG SP G + I++ + PTG AA T L+
Sbjct: 22 SMGLRTVEMKKGP-TDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLR 73
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 39 FTITTVSFTKGPGFKGLGFSIVGGKDSP--KGIMGIYVKTIFPTGQAADTGSLKE 91
T ++ T+GP GLGF+IVGG D GIYV I G AA G L+E
Sbjct: 16 VTEEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQE 68
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 51 GFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107
G GLGFSI GG D+P I++ I P G AA G L+ + N++ E +
Sbjct: 68 GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVT 126
Score = 32.0 bits (71), Expect = 0.100, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 30 LRRAGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTG 87
+RR K + + + KGP KGLGFSI GG + G IYV I G A G
Sbjct: 146 MRR--KPPAEKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDG 201
Query: 88 SLK 90
L+
Sbjct: 202 RLQ 204
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 51 GFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
G GLGF+IVGG+D GI++ I G A +G L++
Sbjct: 316 GSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELRK 352
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 53 KGLGFSIVGGKDSP--KGIMGIYVKTIFPTGQAADTGSLKE 91
GLG IVGGK+ P G +G Y+ I P G A TG L E
Sbjct: 30 NGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLME 70
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 51 GFKGLGFSIVGGKDSPKGIMG----IYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106
G GLGFSI GG D+P +G I++ I P G AA G L+ + N++ E
Sbjct: 11 GNSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREV 68
Query: 107 S 107
+
Sbjct: 69 T 69
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 51 GFKGLGFSIVGGKDSPKGIMG----IYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106
G GLGFSI GG D+P +G I++ I P G AA G L+ + N++ E
Sbjct: 10 GNSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREV 67
Query: 107 S 107
+
Sbjct: 68 T 68
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 51 GFKGLGFSIVGGKDSPKGIMG----IYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106
G GLGFSI GG D+P +G I++ I P G AA G L+ + N++ E
Sbjct: 10 GNSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREV 67
Query: 107 S 107
+
Sbjct: 68 T 68
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 51 GFKGLGFSIVGGKDSPKGIMG----IYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105
G GLGFSI GG D+P +G I++ I P G AA G L+ + N++ E
Sbjct: 21 GNSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVRE 77
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 26 QFCTLRRAGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQA 83
+ +RR K + + + KGP KGLGFSI GG + G IYV I G A
Sbjct: 95 RLYVMRR--KPPAEKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAA 150
Query: 84 ADTGSLK 90
G L+
Sbjct: 151 HKDGRLQ 157
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human
Inad- Like Protein
Length = 116
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 51 GFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSL 89
G GLG SIVGGKD+P + I + ++ G AA G L
Sbjct: 26 GRSGLGLSIVGGKDTP--LNAIVIHEVYEEGAAARDGRL 62
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 51 GFKGLGFSIVGGKDSPKGIMG----IYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106
G GLGFSI GG D+P +G I++ I P G AA G L+ + N++ E
Sbjct: 11 GNSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREV 68
Query: 107 S 107
+
Sbjct: 69 T 69
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 26 QFCTLRRAGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQA 83
+ +RR K + + + KGP KGLGFSI GG + G IYV I G A
Sbjct: 85 RLYVMRR--KPPAEKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAA 140
Query: 84 ADTGSLK 90
G L+
Sbjct: 141 HKDGRLQ 147
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 51 GFKGLGFSIVGGKDSPKGIMG----IYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106
G GLGFSI GG D+P +G I++ I P G AA G L+ + N++ E
Sbjct: 14 GNSGLGFSIAGGTDNPH--IGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREV 71
Query: 107 S 107
+
Sbjct: 72 T 72
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 26 QFCTLRRAGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQA 83
+ +RR K + + + KGP KGLGFSI GG + G IYV I G A
Sbjct: 88 RLYVMRR--KPPAEKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAA 143
Query: 84 ADTGSLK 90
G L+
Sbjct: 144 HKDGRLQ 150
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 38 SFTITTVSFTKGPGFKGLGFSIVG--GKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
S TI V+ KGP KGLGFSI G G G IY+ I G A G L+
Sbjct: 1 SMTIMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQ 53
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 51 GFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105
G GLGFSI GG D+P GI++ I P G AA G L + N++ SE
Sbjct: 13 GNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSE 69
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 37 ASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYK 96
+S + VS + +GLGFSI GG + +GIYV + P GSL E +
Sbjct: 5 SSGEVRLVSLRRAKAHEGLGFSIRGGSEHG---VGIYVSLVEP-------GSLAEKEGLR 54
Query: 97 ISNKI 101
+ ++I
Sbjct: 55 VGDQI 59
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 54 GLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
GLGFS+VG + +G +GI+V+ I A G LKE
Sbjct: 33 GLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKE 70
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDY 95
S T+ + KGP KGLGFSI GG + G IYV I G A G L+
Sbjct: 22 SMTVVEIKLFKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRL 79
Query: 96 KISNKITTSE 105
+ N + E
Sbjct: 80 LMVNNYSLEE 89
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSL 89
TV +GP GLG ++ G + G G+Y++T+ P AA G L
Sbjct: 11 TVELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRL 55
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 35 KSASFTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLK 90
K S I + KGP KGLGFSI GG + G IYV I G A G L+
Sbjct: 4 KPVSEKIMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQ 59
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues
450-558)
Length = 111
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 21/40 (52%)
Query: 51 GFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
G +GLGFSI + G IYVK I P G A G LK
Sbjct: 20 GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLK 59
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 35 KSASFTITTVSFTKGPGFKGLGFSIVG--GKDSPKGIMGIYVKTIFPTGQAADTGSLKED 92
K S I + KGP KGLGFSI G G G IYV I G A G L+
Sbjct: 3 KPVSEKIMEIKLIKGP--KGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIG 60
Query: 93 TDYKISNKITTSEYS 107
N + E +
Sbjct: 61 DKLLAVNNVALEEVT 75
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Inad- Like Protein
Length = 111
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 54 GLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
GLGF IVGGK S G+ V+TI P G A G L+
Sbjct: 27 GLGFGIVGGKTS-----GVVVRTIVPGGLADRDGRLQ 58
>pdb|2H3M|A Chain A, Crystal Structure Of Zo-1 Pdz1
Length = 97
Score = 32.3 bits (72), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPK---GIMGIYVKTIFPTGQAADTGSLKEDTDYKISN 99
TV+ + PGF G G +I GG+D+P G I + + G A G L+E+ + N
Sbjct: 10 TVTLHRAPGF-GFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMVN 66
Query: 100 KIT 102
++
Sbjct: 67 GVS 69
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 32.3 bits (72), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 21/40 (52%)
Query: 51 GFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
G +GLGFSI + G IYVK I P G A G LK
Sbjct: 14 GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLK 53
>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And
Claudins Upon Binding To The 1st Pdz Domain Of Zonula
Occludens 1
Length = 100
Score = 32.3 bits (72), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 34 GKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPK---GIMGIYVKTIFPTGQAADTGSLK 90
G + TV+ + PGF G G +I GG+D+P G I + + G A G L+
Sbjct: 4 GSDHIWEQHTVTLHRAPGF-GFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQ 60
Query: 91 EDTDYKISNKIT 102
E+ + N ++
Sbjct: 61 ENDRVAMVNGVS 72
>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived
Ligand (Wrrttwv)
Length = 107
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPK---GIMGIYVKTIFPTGQAADTGSLKEDTDYKISN 99
TV+ + PGF G G +I GG+D+P G I + + G A G L+E+ + N
Sbjct: 10 TVTLHRAPGF-GFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMVN 66
Query: 100 KIT 102
++
Sbjct: 67 GVS 69
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues
451-549)
Length = 121
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 21/40 (52%)
Query: 51 GFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
G +GLGFSI + G IYVK I P G A G LK
Sbjct: 39 GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLK 78
>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived
Ligand (wrrttyl)
Length = 107
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPK---GIMGIYVKTIFPTGQAADTGSLKEDTDYKISN 99
TV+ + PGF G G +I GG+D+P G I + + G A G L+E+ + N
Sbjct: 10 TVTLHRAPGF-GFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMVN 66
Query: 100 KIT 102
++
Sbjct: 67 GVS 69
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 42 TTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSL 89
TT+ +KG GLG SIVGG D+ G I + ++ G A G L
Sbjct: 6 TTIEISKGR--TGLGLSIVGGSDTLLG--AIIIHEVYEEGAACKDGRL 49
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLK 90
I + KGP KGLGFSI GG + G IYV +I G A G L+
Sbjct: 4 IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQ 53
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKIS 98
I + KGP KGLGFSI GG + G IYV I G A G L+
Sbjct: 12 IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 69
Query: 99 NKITTSEYS 107
N + E +
Sbjct: 70 NNVCLEEVT 78
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKIS 98
I + KGP KGLGFSI GG + G IYV I G A G L+
Sbjct: 4 IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 99 NKITTSE 105
N ++ E
Sbjct: 62 NSVSLEE 68
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLK 90
I + KGP KGLGFSI GG + G IYV I G A G L+
Sbjct: 4 IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQ 53
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 51 GFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLK 90
G GLGFSI GG D+P I++ I G AA G L+
Sbjct: 10 GNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLR 51
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 54 GLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTD 94
GLGFS+ GG D + I V +FP G A+ G++++ +
Sbjct: 28 GLGFSLAGGADLENKV--ITVHRVFPNGLASQEGTIQKGNE 66
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 53 KGLGFSIVGGKDS---PKGIMGIYVKTIFPTGQAADTGSLK 90
+GLGFSI GGK S G GI+V I G A G+L+
Sbjct: 18 RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQ 58
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 38 SFTITTVSFTKGP-------GFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
S ++ FT+ P G GLGF+IVGG+D GI+V I G A +G L+
Sbjct: 1 SGSLAEEDFTREPRKIILHKGSTGLGFNIVGGEDGE----GIFVSFILAGGPADLSGELR 56
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLK 90
I + KGP KGLGFSI GG + G IYV I G A G L+
Sbjct: 4 IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQ 53
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSL 89
I TV+ K G+G SIV K + + +GIYVK++ G A G L
Sbjct: 6 IITVTLKK---QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRL 51
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
Length = 106
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSL 89
I TV+ K G+G SIV K + + +GIYVK++ G A G L
Sbjct: 12 IITVTLKK---QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRL 57
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSL 89
I TV+ K G+G SIV K + + +GIYVK++ G A G L
Sbjct: 6 IITVTLKK---QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRL 51
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 51 GFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLK 90
G GLGFSI GG D+P I++ I G AA G L+
Sbjct: 20 GNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLR 61
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Query: 53 KGLGFSIVGGKD--SPKGIMGIYVKTIFPTGQAADTGSLK 90
+GLGF+I+GGK+ SP IY+ + P G A G LK
Sbjct: 16 EGLGFNIMGGKEQNSP-----IYISRVIPGGVADRHGGLK 50
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLK 90
+ + KGP KGLGFSI GG + G IYV I G A G L+
Sbjct: 4 VMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQ 53
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery
Of Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSL 89
I TV+ K G+G SIV K + + +GIYVK++ G A G L
Sbjct: 12 IITVTLKK---QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRL 57
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 44 VSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLK 90
+ KGP KGLGFSI GG + G IYV I G A G L+
Sbjct: 2 IKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQ 48
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 44 VSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKI 101
+ KGP KGLGFSI GG + G IYV I G A G L+ N +
Sbjct: 3 IKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV 60
Query: 102 TTSEYS 107
E +
Sbjct: 61 CLEEVT 66
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 51 GFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
G GLGF+IVGG+D GI+V I G A +G L+
Sbjct: 24 GSTGLGFNIVGGEDGE----GIFVSFILAGGPADLSGELR 59
>pdb|2DB5|A Chain A, Solution Structure Of The First Pdz Domain Of Inad-Like
Protein
Length = 128
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 50 PGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYSP 108
P GLGFS+V + G + I+VK + P G AD D K +++I ++P
Sbjct: 34 PSTGGLGFSVVALRSQNLGKVDIFVKDVQP-GSVAD-----RDQRLKENDQILAINHTP 86
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 55 LGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
LG S+ GG ++ GIYVK I P G A G + +
Sbjct: 25 LGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHK 61
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 55 LGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
LG S+ GG ++ GIYVK I P G A G + +
Sbjct: 17 LGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHK 53
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 55 LGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
LG S+ GG ++ GIYVK + P G A G + +
Sbjct: 18 LGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHK 54
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With
Ra-Gef2 Peptide
Length = 96
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 55 LGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
LG S+ GG ++ GIYVK + P G A G + +
Sbjct: 18 LGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHK 54
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 51 GFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
G GLGF+IVGG+D GI+V I G A +G L+
Sbjct: 12 GSTGLGFNIVGGEDGE----GIFVSFILAGGPADLSGELQ 47
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 51 GFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
G GLGF+IVGG+D GI++ I G A +G L+
Sbjct: 23 GSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELR 58
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 51 GFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
G GLGF+IVGG+D GI++ I G A +G L++
Sbjct: 13 GSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELRK 49
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 51 GFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
G GLGF+IVGG+D GI++ I G A +G L+
Sbjct: 16 GSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELR 51
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKIS 98
F V+ K PG + LGF+I GGK S +GI++ + P A G + D ++
Sbjct: 14 FLPRIVTLKKPPGAQ-LGFNIRGGKASQ---LGIFISKVIPDSDAHRAGLQEGDQVLAVN 69
Query: 99 N 99
+
Sbjct: 70 D 70
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 51 GFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
G GLGF+I+GG+D GI++ I G A +G L+
Sbjct: 23 GSTGLGFNIIGGEDGE----GIFISFILAGGPADLSGELR 58
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
S TV +G KG GFS+ GG++ M +YV + G A +G ++
Sbjct: 22 SMDFYTVELERGA--KGFGFSLRGGREYN---MDLYVLRLAEDGPAERSGKMR 69
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 51 GFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105
G KGLGFSI GG + G IYV I G A G L+ N + E
Sbjct: 11 GSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEE 67
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 54 GLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
G GF+I+GG D P + VK++ P G AA G ++
Sbjct: 31 GFGFTIIGG-DEPDEFL--QVKSVIPDGPAAQDGKME 64
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 51 GFKGLGFSIVGGKDSPKGI-MGIYVKTIFPTGQAADTGSLK 90
G GLG S+ G + +GI+VK+I G A+ G L+
Sbjct: 19 GSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLR 59
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
F TV KG KG GFSI GG++ M +YV + G A G ++
Sbjct: 10 FDYFTVDMEKGA--KGFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMR 56
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 51 GFKGLGFSIVGGKDSPKGI-MGIYVKTIFPTGQAADTGSLK 90
G GLG S+ G + +GI+VK+I G A+ G L+
Sbjct: 16 GSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLR 56
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 54 GLGFSIVG---GKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
GLG SI+G G D+ +GI+VKT+ G A G ++
Sbjct: 92 GLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQ 131
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
V+ K PG + LG ++ GG + + IYV ++ P G + G +K
Sbjct: 27 VVNIQKDPG-ESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIK 73
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 54 GLGFSIVG---GKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
GLG SI+G G D+ +GI+VKT+ G A G ++
Sbjct: 16 GLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQ 55
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function,
Nmr, 20 Structures
Length = 130
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIF 78
+A T+ TV+ K GLGFS+ GGK S G + + IF
Sbjct: 25 TAEATVCTVTLEKMSA--GLGFSLEGGKGSLHGDKPLTINRIF 65
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In
Human Cdna, Kiaa1095
Length = 107
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 55 LGFSIVGGK---DSPKG--IMGIYVKTIFPTGQAADTGSLK 90
LGF+I+GG+ D+ G GI+V I +G AA G L+
Sbjct: 21 LGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQ 61
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGI------MGIYVKTIFPTGQAADTGSLK 90
+ + K PG + LG SI GG G GI++ + PTG A G L+
Sbjct: 10 LRELCIQKAPGER-LGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLR 64
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 54 GLGFSIVG---GKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
GLG SI+G G D+ +GI+VKT+ G A G ++
Sbjct: 21 GLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQ 60
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 38 SFTITTVSFTKGPGFKGLGFSIVGGK------DSPKGIMGIYVKTIFPTGQAADTGSLK 90
S V + P K LG SIVGG+ + + + GI++K + A G+LK
Sbjct: 2 SMQPRRVELWREPS-KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLK 59
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 51 GFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
G GLGF+IVGG+ GI++ I G A +G L+
Sbjct: 15 GSTGLGFNIVGGEXGE----GIFISFILAGGPADLSGELR 50
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 51 GFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
G GLGF+IVGG+ GI++ I G A +G L+
Sbjct: 20 GSTGLGFNIVGGEXGE----GIFISFILAGGPADLSGELR 55
>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse
Tjp2
Length = 117
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 53 KGLGFSIVGGKDSP---KGIMGIYVKTIFPTGQAADTGSLKEDTDYKISN 99
+G G ++ GG+D+P G I + + P G A G L+E+ + N
Sbjct: 26 RGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQENDRVVMVN 73
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 38 SFTITTVSFTKGPGFKGLGFSIVGGK------DSPKGIMGIYVKTIFPTGQAADTGSLK 90
S V + P K LG SIVGG+ + + + GI++K + A G+LK
Sbjct: 22 SMQPRRVELWREPS-KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLK 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,577,165
Number of Sequences: 62578
Number of extensions: 95662
Number of successful extensions: 313
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 257
Number of HSP's gapped (non-prelim): 89
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)