Query psy4600
Match_columns 108
No_of_seqs 152 out of 1061
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 21:05:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00595 PDZ: PDZ domain (Also 99.5 4.8E-14 1E-18 87.8 7.2 61 43-107 1-61 (81)
2 KOG3550|consensus 99.5 1.8E-14 4E-19 101.0 5.4 60 41-105 91-150 (207)
3 KOG3209|consensus 99.4 3.7E-13 8.1E-18 111.6 7.1 68 35-107 893-960 (984)
4 KOG1892|consensus 99.3 2E-12 4.4E-17 109.9 6.9 66 39-107 932-997 (1629)
5 KOG3553|consensus 99.1 1E-10 2.2E-15 76.9 5.3 69 37-106 12-94 (124)
6 KOG3209|consensus 99.1 1.5E-10 3.2E-15 96.4 7.4 63 40-107 649-711 (984)
7 KOG3571|consensus 99.1 1.7E-10 3.8E-15 93.0 6.7 67 39-107 248-314 (626)
8 KOG3551|consensus 99.1 6.9E-11 1.5E-15 93.0 3.9 65 39-107 83-147 (506)
9 KOG3580|consensus 99.1 1.4E-10 3.1E-15 95.5 5.5 64 41-107 9-75 (1027)
10 cd00992 PDZ_signaling PDZ doma 99.0 2.1E-09 4.6E-14 66.1 8.1 60 42-106 2-61 (82)
11 KOG3549|consensus 98.9 1.4E-09 3.1E-14 84.9 5.4 69 34-106 48-116 (505)
12 smart00228 PDZ Domain present 98.9 1.2E-08 2.5E-13 62.7 8.3 59 42-106 3-61 (85)
13 KOG3651|consensus 98.9 4.3E-09 9.3E-14 81.0 6.4 62 42-107 6-67 (429)
14 cd00136 PDZ PDZ domain, also c 98.8 1.8E-08 3.9E-13 60.4 6.3 47 54-106 2-48 (70)
15 KOG3606|consensus 98.7 9.2E-09 2E-13 78.1 4.2 66 42-107 160-231 (358)
16 KOG3605|consensus 98.7 1E-08 2.2E-13 85.0 2.5 66 39-107 644-710 (829)
17 PF13180 PDZ_2: PDZ domain; PD 98.5 2.4E-07 5.3E-12 57.6 5.8 47 54-105 2-48 (82)
18 KOG3580|consensus 98.5 1.2E-07 2.5E-12 78.6 5.2 60 39-107 406-465 (1027)
19 KOG3542|consensus 98.5 8.6E-08 1.9E-12 80.3 4.0 88 15-107 511-598 (1283)
20 cd00988 PDZ_CTP_protease PDZ d 98.4 8E-07 1.7E-11 55.0 5.7 47 53-106 2-48 (85)
21 KOG0609|consensus 98.2 2.5E-06 5.4E-11 69.5 6.0 65 38-108 120-184 (542)
22 cd00990 PDZ_glycyl_aminopeptid 98.2 4.5E-06 9.7E-11 51.1 5.2 34 71-105 13-46 (80)
23 cd00989 PDZ_metalloprotease PD 98.1 6.2E-06 1.4E-10 50.2 4.9 34 71-105 13-46 (79)
24 cd00991 PDZ_archaeal_metallopr 98.1 7.2E-06 1.6E-10 50.8 4.7 35 70-105 10-44 (79)
25 KOG3552|consensus 98.1 3.1E-06 6.8E-11 72.8 3.6 55 41-107 56-110 (1298)
26 cd00987 PDZ_serine_protease PD 97.9 2.1E-05 4.5E-10 48.8 4.5 35 70-105 24-58 (90)
27 cd00986 PDZ_LON_protease PDZ d 97.9 2.4E-05 5.1E-10 48.1 4.6 33 71-105 9-41 (79)
28 PLN00049 carboxyl-terminal pro 97.9 3.3E-05 7.1E-10 61.0 6.4 53 53-106 85-137 (389)
29 TIGR00225 prc C-terminal pepti 97.8 4.3E-05 9.3E-10 59.0 5.6 47 53-106 51-97 (334)
30 COG0793 Prc Periplasmic protea 97.6 9.8E-05 2.1E-09 58.9 5.1 49 53-107 100-148 (406)
31 KOG3605|consensus 97.4 0.00016 3.5E-09 60.6 4.2 55 41-106 737-791 (829)
32 TIGR02037 degP_htrA_DO peripla 97.4 0.00024 5.2E-09 56.5 4.4 35 70-105 257-291 (428)
33 PRK11186 carboxy-terminal prot 97.3 0.00038 8.2E-09 58.7 5.0 42 53-100 244-285 (667)
34 TIGR02037 degP_htrA_DO peripla 97.2 0.00041 8.8E-09 55.2 4.2 36 70-106 362-397 (428)
35 PRK10139 serine endoprotease; 97.1 0.00068 1.5E-08 54.7 4.6 35 70-105 290-324 (455)
36 PRK10898 serine endoprotease; 97.1 0.00074 1.6E-08 52.8 4.6 35 70-105 279-313 (353)
37 TIGR01713 typeII_sec_gspC gene 97.1 0.00076 1.6E-08 50.9 4.2 36 70-106 191-226 (259)
38 PRK10139 serine endoprotease; 97.1 0.00078 1.7E-08 54.4 4.5 35 70-105 390-424 (455)
39 TIGR02038 protease_degS peripl 97.1 0.00073 1.6E-08 52.7 4.0 35 70-105 278-312 (351)
40 PRK10942 serine endoprotease; 97.0 0.00095 2.1E-08 54.1 4.7 36 70-106 311-346 (473)
41 TIGR00054 RIP metalloprotease 97.0 0.00095 2.1E-08 53.3 4.4 35 70-105 203-237 (420)
42 PF04495 GRASP55_65: GRASP55/6 97.0 0.002 4.3E-08 44.4 5.1 53 53-106 26-79 (138)
43 PRK10942 serine endoprotease; 96.9 0.0012 2.6E-08 53.6 4.5 36 70-106 408-443 (473)
44 KOG3938|consensus 96.8 0.00084 1.8E-08 51.3 2.5 60 40-106 126-185 (334)
45 PRK10779 zinc metallopeptidase 96.8 0.0017 3.7E-08 52.2 4.2 34 71-105 222-255 (449)
46 PRK10779 zinc metallopeptidase 96.8 0.0011 2.4E-08 53.3 3.1 33 72-105 128-160 (449)
47 TIGR00054 RIP metalloprotease 96.6 0.0022 4.7E-08 51.2 3.6 35 70-105 128-162 (420)
48 COG3975 Predicted protease wit 96.3 0.0066 1.4E-07 50.0 4.8 41 54-101 452-492 (558)
49 KOG3129|consensus 95.8 0.0099 2.1E-07 43.9 3.3 31 71-102 140-170 (231)
50 KOG4371|consensus 95.7 0.011 2.4E-07 52.1 3.5 64 40-108 1245-1308(1332)
51 COG0265 DegQ Trypsin-like seri 95.4 0.028 6E-07 43.4 4.4 35 70-105 270-304 (347)
52 KOG1945|consensus 94.8 0.016 3.5E-07 45.7 1.8 97 5-106 67-166 (377)
53 PF14685 Tricorn_PDZ: Tricorn 94.6 0.1 2.2E-06 33.4 4.9 35 71-105 13-56 (88)
54 KOG1320|consensus 93.5 0.1 2.2E-06 42.7 3.9 36 70-106 398-433 (473)
55 TIGR02860 spore_IV_B stage IV 93.2 0.15 3.3E-06 40.9 4.4 34 71-105 106-147 (402)
56 COG3480 SdrC Predicted secrete 92.6 0.16 3.5E-06 39.7 3.7 34 70-105 130-163 (342)
57 KOG0606|consensus 92.4 0.25 5.4E-06 44.2 4.9 59 43-106 629-693 (1205)
58 KOG1738|consensus 91.8 0.19 4.1E-06 42.3 3.4 48 53-105 213-260 (638)
59 KOG1421|consensus 89.7 0.32 6.8E-06 41.9 3.0 33 71-105 304-336 (955)
60 PRK09681 putative type II secr 87.7 0.6 1.3E-05 35.8 3.1 19 88-106 224-242 (276)
61 KOG3532|consensus 84.8 1.2 2.6E-05 38.6 3.6 47 53-105 386-432 (1051)
62 PF12812 PDZ_1: PDZ-like domai 81.6 2.7 5.8E-05 26.1 3.5 35 71-106 31-65 (78)
63 COG3031 PulC Type II secretory 80.0 4.6 0.0001 30.7 4.9 23 82-105 219-241 (275)
64 COG0750 Predicted membrane-ass 74.7 4.7 0.0001 31.1 3.8 33 73-106 132-164 (375)
65 KOG4407|consensus 72.0 6.7 0.00015 36.5 4.4 35 71-106 97-131 (1973)
66 KOG1421|consensus 68.3 6.3 0.00014 34.3 3.4 33 71-107 772-804 (955)
67 KOG4407|consensus 67.9 2.2 4.7E-05 39.5 0.6 36 70-106 143-178 (1973)
68 KOG2921|consensus 66.2 6.5 0.00014 32.0 2.9 37 70-106 220-256 (484)
69 KOG0792|consensus 64.5 6 0.00013 35.6 2.6 61 44-105 708-784 (1144)
70 KOG4024|consensus 56.7 53 0.0012 24.7 6.1 91 3-104 123-216 (266)
71 KOG3834|consensus 55.4 47 0.001 27.3 6.1 47 55-101 94-141 (462)
72 KOG3834|consensus 43.5 18 0.0004 29.6 2.1 35 70-104 15-49 (462)
73 PF11874 DUF3394: Domain of un 42.3 56 0.0012 23.6 4.2 37 55-98 113-149 (183)
74 cd06919 Asp_decarbox Aspartate 40.4 20 0.00043 24.0 1.6 21 77-99 68-88 (111)
75 PRK05449 aspartate alpha-decar 38.3 22 0.00049 24.2 1.6 21 77-99 69-89 (126)
76 COG1625 Fe-S oxidoreductase, r 37.5 33 0.00072 27.9 2.7 35 73-108 4-39 (414)
77 PF07591 PT-HINT: Pretoxin HIN 35.9 23 0.00049 23.8 1.4 31 68-102 60-90 (130)
78 TIGR00223 panD L-aspartate-alp 35.4 27 0.00058 23.9 1.6 21 77-99 69-89 (126)
79 PF02261 Asp_decarbox: Asparta 33.7 23 0.00049 23.9 1.0 19 78-98 70-88 (116)
80 COG0853 PanD Aspartate 1-decar 33.3 25 0.00055 23.9 1.2 22 77-100 68-89 (126)
81 KOG3369|consensus 31.0 28 0.00061 25.3 1.2 25 82-107 46-70 (199)
82 KOG4371|consensus 29.7 30 0.00066 31.6 1.4 57 40-105 1147-1203(1332)
83 PRK03760 hypothetical protein; 28.5 38 0.00082 22.5 1.5 24 71-96 90-113 (117)
84 PF15057 DUF4537: Domain of un 25.8 34 0.00073 22.9 0.8 27 71-98 39-65 (124)
85 COG4100 Cystathionine beta-lya 25.1 43 0.00094 26.7 1.4 22 82-103 97-118 (416)
86 COG2144 Selenophosphate synthe 23.8 1.4E+02 0.0031 23.5 4.0 47 53-99 121-170 (324)
87 PF13403 Hint_2: Hint domain 23.7 64 0.0014 22.1 1.9 23 78-101 11-33 (147)
88 TIGR00739 yajC preprotein tran 23.6 59 0.0013 20.3 1.6 15 87-101 36-50 (84)
89 PRK05585 yajC preprotein trans 23.1 57 0.0012 21.3 1.5 16 86-101 50-65 (106)
90 PTZ00067 40S ribosomal S23; Pr 21.9 2.9E+02 0.0062 19.3 6.4 75 27-105 55-132 (143)
91 cd03701 IF2_IF5B_II IF2_IF5B_I 21.4 49 0.0011 20.9 0.9 13 85-97 23-35 (95)
92 cd03703 aeIF5B_II aeIF5B_II: T 21.4 53 0.0011 21.8 1.1 13 85-97 23-35 (110)
93 PRK05886 yajC preprotein trans 20.6 70 0.0015 21.2 1.6 15 87-101 37-51 (109)
94 PRK06531 yajC preprotein trans 20.2 67 0.0015 21.4 1.4 14 88-101 36-49 (113)
No 1
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.52 E-value=4.8e-14 Score=87.82 Aligned_cols=61 Identities=28% Similarity=0.442 Sum_probs=53.7
Q ss_pred EEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 43 ~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+|+|.|.+. .+|||++.++.+.. ..++||+.|.|+|+|++.| |++||+|++|||+++.+++
T Consensus 1 ~v~l~k~~~-~~lG~~l~~~~~~~--~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~ 61 (81)
T PF00595_consen 1 QVTLEKSGN-GPLGFTLRGGSDND--EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMS 61 (81)
T ss_dssp EEEEEESTT-SBSSEEEEEESTSS--SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSB
T ss_pred CEEEEeCCC-CCcCEEEEecCCCC--cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCC
Confidence 578888643 89999999987653 3589999999999999999 9999999999999999875
No 2
>KOG3550|consensus
Probab=99.52 E-value=1.8e-14 Score=100.99 Aligned_cols=60 Identities=32% Similarity=0.562 Sum_probs=54.4
Q ss_pred EEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 41 ~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
++.|.|.|.. .||||++.||+... .||||++|+|||.|++-|.|+.||+||+|||+++.+
T Consensus 91 prvvelpktd--eglgfnvmggkeqn---spiyisriipggvadrhgglkrgdqllsvngvsveg 150 (207)
T KOG3550|consen 91 PRVVELPKTD--EGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 150 (207)
T ss_pred CceeecCccc--cccceeeccCcccC---CceEEEeecCCccccccCcccccceeEeecceeecc
Confidence 4568899987 89999999999864 489999999999999999999999999999999875
No 3
>KOG3209|consensus
Probab=99.42 E-value=3.7e-13 Score=111.58 Aligned_cols=68 Identities=28% Similarity=0.442 Sum_probs=62.4
Q ss_pred CCCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 35 KSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 35 ~~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+.....++|+|.|+. +||||||+||+.. .+++||-++...|||.++|++++||+|++|||++..+|+
T Consensus 893 ~~qn~~~~~VelErG~--kGFGFSiRGGrey---nM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmt 960 (984)
T KOG3209|consen 893 MSQNGDLYTVELERGA--KGFGFSIRGGREY---NMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMT 960 (984)
T ss_pred ccccCCeeEEEeeccc--cccceEeeccccc---ccceEEEEeccCCCccccCceeecceEEEecCcccCCCc
Confidence 5666788999999998 8999999999654 579999999999999999999999999999999999986
No 4
>KOG1892|consensus
Probab=99.34 E-value=2e-12 Score=109.94 Aligned_cols=66 Identities=30% Similarity=0.449 Sum_probs=60.8
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..+.+|+|.|. +|+|++|+..++.....+||||++|.+||+|+.||||..||+||+|||.+|.++|
T Consensus 932 pei~~vtL~Kn---nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGis 997 (1629)
T KOG1892|consen 932 PEIITVTLKKN---NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGIS 997 (1629)
T ss_pred CceEEEEEecc---CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCccccccc
Confidence 35889999987 4999999998877778899999999999999999999999999999999999986
No 5
>KOG3553|consensus
Probab=99.13 E-value=1e-10 Score=76.92 Aligned_cols=69 Identities=26% Similarity=0.220 Sum_probs=54.1
Q ss_pred CcceEEEEEEEeCC-----C--CCcccEEEecCcCCCC-------CcccEEEEEeCCCChhcccCCCCCCCeEEEECCee
Q psy4600 37 ASFTITTVSFTKGP-----G--FKGLGFSIVGGKDSPK-------GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKIT 102 (108)
Q Consensus 37 ~~~~~~~V~L~K~~-----~--~~glGfsi~GG~~~~~-------~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~ 102 (108)
..+-...|+|.|.. | .--+||+|-||.++.. .+.||||++|..|+||+..| |+.+|.||+|||.+
T Consensus 12 veclsi~velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~D 90 (124)
T KOG3553|consen 12 VECLSIRVELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWD 90 (124)
T ss_pred eEEEEEEEEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCce
Confidence 34445667777653 1 1137999999998731 46799999999999999998 99999999999998
Q ss_pred cccC
Q psy4600 103 TSEY 106 (108)
Q Consensus 103 l~~~ 106 (108)
++=+
T Consensus 91 fTMv 94 (124)
T KOG3553|consen 91 FTMV 94 (124)
T ss_pred eEEE
Confidence 7643
No 6
>KOG3209|consensus
Probab=99.13 E-value=1.5e-10 Score=96.45 Aligned_cols=63 Identities=29% Similarity=0.509 Sum_probs=57.6
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+...|-|.|.+ .||||.|.||.+.. .+|||-.|++.|+|++||||+.||+|++|+|+++.+.|
T Consensus 649 k~ldV~L~rke--sGFGFRiLGG~ep~---qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~Gks 711 (984)
T KOG3209|consen 649 KELDVFLRRKE--SGFGFRILGGDEPG---QPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKS 711 (984)
T ss_pred cceeEEEEeec--cccceEEecCCCCC---CeeEEeeeeecccccccCcccCCCeEEEecCeeccCcc
Confidence 67889999987 79999999997753 48999999999999999999999999999999998875
No 7
>KOG3571|consensus
Probab=99.11 E-value=1.7e-10 Score=92.99 Aligned_cols=67 Identities=30% Similarity=0.404 Sum_probs=58.3
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..+++|.|.-..- .-||++|+|.... .++.+|||..|.++|+.+.|||+.+||.||+||.+++.++|
T Consensus 248 lnIITV~LnMe~v-nfLGiSivgqsn~-rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmS 314 (626)
T KOG3571|consen 248 LNIITVTLNMETV-NFLGISIVGQSNA-RGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMS 314 (626)
T ss_pred eeEEEEEeccccc-ccceeEeecccCc-CCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcC
Confidence 4578898876653 5699999986543 46779999999999999999999999999999999999987
No 8
>KOG3551|consensus
Probab=99.10 E-value=6.9e-11 Score=92.98 Aligned_cols=65 Identities=28% Similarity=0.309 Sum_probs=57.4
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
...++|++.|... +|||+||+||+++. ++|.|++|++|-+|++.+.|..||.||+|||.+|.+.|
T Consensus 83 ~~~R~V~V~K~d~-gGLGISIKGGreNk---MPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~At 147 (506)
T KOG3551|consen 83 EAERRVRVVKQDA-GGLGISIKGGRENK---MPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDAT 147 (506)
T ss_pred cccceeEEEEecC-CcceEEeecCcccC---CceehhHhccccccccccceeeccEEEEecchhhhhcc
Confidence 3457788888765 89999999999874 79999999999999999999999999999999987643
No 9
>KOG3580|consensus
Probab=99.09 E-value=1.4e-10 Score=95.45 Aligned_cols=64 Identities=31% Similarity=0.618 Sum_probs=58.1
Q ss_pred EEEEEEEeCCCCCcccEEEecCcCCCC---CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 41 ITTVSFTKGPGFKGLGFSIVGGKDSPK---GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 41 ~~~V~L~K~~~~~glGfsi~GG~~~~~---~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
-++|+|.|.++ .|||+.|.||.++|+ +...|.|+.|.||||| +|+|+.+|+|+.|||+++.++.
T Consensus 9 QhTvTL~kdp~-rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPA--eG~LQenDrvvMVNGvsMenv~ 75 (1027)
T KOG3580|consen 9 QHTVTLQKDPK-RGFGIAISGGRDNPHFENGETSIVISDVLPGGPA--EGLLQENDRVVMVNGVSMENVL 75 (1027)
T ss_pred hheeeeecCCC-CcceeEeecCCCCCCccCCceeEEEeeccCCCCc--ccccccCCeEEEEcCcchhhhH
Confidence 46899999997 899999999999986 5678999999999999 5899999999999999998763
No 10
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.04 E-value=2.1e-09 Score=66.08 Aligned_cols=60 Identities=40% Similarity=0.619 Sum_probs=49.1
Q ss_pred EEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 42 TTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 42 ~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
+.+.|.+... .+|||.+.++... ..+++|..|.++++|++.| |++||+|++|||..+.++
T Consensus 2 ~~~~l~~~~~-~~~G~~~~~~~~~---~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~ 61 (82)
T cd00992 2 RTVTLRKDPG-GGLGFSLRGGKDS---GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGL 61 (82)
T ss_pred EEEEEEeCCC-CCcCEEEeCcccC---CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCcc
Confidence 4577777742 7999999877543 2489999999999999855 999999999999998743
No 11
>KOG3549|consensus
Probab=98.93 E-value=1.4e-09 Score=84.93 Aligned_cols=69 Identities=25% Similarity=0.299 Sum_probs=60.7
Q ss_pred CCCCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 34 GKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 34 ~~~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
+.|.....++|+|.+.+- +|||++|.||.+- +.||.|++|...-+|+..|.|.+||.||+|||+.++..
T Consensus 48 G~p~~s~eRtVtirRQ~v-GGlGLSIKGGaEH---n~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c 116 (505)
T KOG3549|consen 48 GPPMESKERTVTIRRQKV-GGLGLSIKGGAEH---NLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTAC 116 (505)
T ss_pred CCCccCCceeEEEEeeec-Ccceeeecccccc---CccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecC
Confidence 456777888999988774 8999999999763 46999999999999999999999999999999998765
No 12
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.93 E-value=1.2e-08 Score=62.72 Aligned_cols=59 Identities=37% Similarity=0.537 Sum_probs=49.1
Q ss_pred EEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 42 TTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 42 ~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
..+.+.|.. ..|||.+..+.... .+++|..|.++++|++.| |++||+|++|||+.+.+.
T Consensus 3 ~~~~~~~~~--~~~G~~~~~~~~~~---~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~ 61 (85)
T smart00228 3 RLVELEKGG--GGLGFSLVGGKDEG---GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGL 61 (85)
T ss_pred EEEEEEECC--CcccEEEECCCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence 456777776 69999998654321 489999999999999998 999999999999988764
No 13
>KOG3651|consensus
Probab=98.89 E-value=4.3e-09 Score=81.00 Aligned_cols=62 Identities=26% Similarity=0.348 Sum_probs=53.5
Q ss_pred EEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 42 TTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 42 ~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
-+|+|+|+.. +-+|+||.||.... ..+||..|+.+.||+++|+++.||+|++|||+++.+.+
T Consensus 6 ~~v~ltKD~~-nliGISIGGGapyC---PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGkt 67 (429)
T KOG3651|consen 6 ETVELTKDEK-NLIGISIGGGAPYC---PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKT 67 (429)
T ss_pred CcEEEeeccc-cceeEEecCCCCcC---CeEEEEEeccCCchhccCccccCCeeEEecceeecCcc
Confidence 4688999874 55799999987653 26899999999999999999999999999999998754
No 14
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.82 E-value=1.8e-08 Score=60.40 Aligned_cols=47 Identities=32% Similarity=0.488 Sum_probs=41.1
Q ss_pred cccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 54 GLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 54 glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
+|||++.+..+ .+++|..|.++++|+..| |++||+|++|||.++.+.
T Consensus 2 ~~G~~~~~~~~-----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~ 48 (70)
T cd00136 2 GLGFSIRGGTE-----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNL 48 (70)
T ss_pred CccEEEecCCC-----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence 68999987644 379999999999999865 999999999999998765
No 15
>KOG3606|consensus
Probab=98.75 E-value=9.2e-09 Score=78.07 Aligned_cols=66 Identities=29% Similarity=0.423 Sum_probs=55.7
Q ss_pred EEEEEEeCCCCCcccEEEecCcCC---CC---CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 42 TTVSFTKGPGFKGLGFSIVGGKDS---PK---GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 42 ~~V~L~K~~~~~glGfsi~GG~~~---~~---~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+.|.|.|-...+.|||.|+.|..- ++ .-.||||+++.|||.|+..|.|-+.|++|+|||+-+.+.+
T Consensus 160 RRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKT 231 (358)
T KOG3606|consen 160 RRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKT 231 (358)
T ss_pred hheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEecccc
Confidence 468888876557999999998743 22 2459999999999999999999999999999999887754
No 16
>KOG3605|consensus
Probab=98.67 E-value=1e-08 Score=84.98 Aligned_cols=66 Identities=23% Similarity=0.211 Sum_probs=56.7
Q ss_pred ceEEEEEEEeCCCCCcccEEEec-CcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVG-GKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~G-G~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
....+|.|.|.+| ..||+.|+. ||++-. .-+.|.++.++|||++.|.|-+||+|++|||++|.++.
T Consensus 644 E~qKEVvv~K~kG-EiLGVViVESGWGSmL--PTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLP 710 (829)
T KOG3605|consen 644 ENQKEVVLEKHKG-EILGVVIVESGWGSIL--PTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLP 710 (829)
T ss_pred cccceeeeecccC-ceeeEEEEecCccccc--hHHHHHhcccCChhhhcCCccccceeEeecCceecccc
Confidence 3567789999887 899999886 888732 14789999999999999999999999999999999874
No 17
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.55 E-value=2.4e-07 Score=57.62 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=37.8
Q ss_pred cccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 54 GLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 54 glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.||+.+..-.. ..+++|..|.+++||++.| |++||.|++|||..+.+
T Consensus 2 ~lGv~~~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~ 48 (82)
T PF13180_consen 2 GLGVTVQNLSD----TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNS 48 (82)
T ss_dssp E-SEEEEECSC----SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSS
T ss_pred EECeEEEEccC----CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCC
Confidence 57887765432 2389999999999999998 99999999999998854
No 18
>KOG3580|consensus
Probab=98.54 E-value=1.2e-07 Score=78.62 Aligned_cols=60 Identities=27% Similarity=0.474 Sum_probs=52.8
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.....|.+.|+ +++|+.++||.+ .||||+-|..+++|++.| |+.||+||.||.++++++.
T Consensus 406 P~tk~VrF~KG---dSvGLRLAGGND-----VGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~ 465 (1027)
T KOG3580|consen 406 PNTKMVRFKKG---DSVGLRLAGGND-----VGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLV 465 (1027)
T ss_pred CCceeEEeecC---CeeeeEeccCCc-----eeEEEeecccCCchhhcc-ccccceeEEeccccchhhh
Confidence 45567788776 599999999965 499999999999999998 9999999999999998863
No 19
>KOG3542|consensus
Probab=98.52 E-value=8.6e-08 Score=80.34 Aligned_cols=88 Identities=27% Similarity=0.340 Sum_probs=67.5
Q ss_pred cccccccccccceEEeecCCCCCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCe
Q psy4600 15 QEEDEDEEEESQFCTLRRAGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTD 94 (108)
Q Consensus 15 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~ 94 (108)
+..-|+++....+..+.... ....+.+.|.|+|......|-|+++||.+.. . +|||..|.|++.|++.| |+.||+
T Consensus 511 E~nLEr~kM~ghLrLLNIAC-aaKAK~RqviLtk~sre~pl~f~L~GGsEkG--f-gifV~~V~pgskAa~~G-lKRgDq 585 (1283)
T KOG3542|consen 511 EGNLERDKMHGHLRLLNIAC-AAKAKPRQVILTKASREDPLMFRLVGGSEKG--F-GIFVAEVFPGSKAAREG-LKRGDQ 585 (1283)
T ss_pred hhhhhhccccceeeehhhhh-hhcccceeEEEecccccCCceeEeccCcccc--c-eeEEeeecCCchHHHhh-hhhhhh
Confidence 33445555555555554432 3345678899998544468999999997754 3 89999999999999998 999999
Q ss_pred EEEECCeecccCC
Q psy4600 95 YKISNKITTSEYS 107 (108)
Q Consensus 95 il~VNG~~l~~~s 107 (108)
||+|||+++.+++
T Consensus 586 ilEVNgQnfenis 598 (1283)
T KOG3542|consen 586 ILEVNGQNFENIS 598 (1283)
T ss_pred hhhccccchhhhh
Confidence 9999999998875
No 20
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.42 E-value=8e-07 Score=55.01 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=39.4
Q ss_pred CcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 53 KGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 53 ~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.+||+.+.-. ..+++|..|.++++|++.| |++||+|++|||+.+.+.
T Consensus 2 ~~lG~~~~~~------~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~ 48 (85)
T cd00988 2 GGIGLELKYD------DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGL 48 (85)
T ss_pred eEEEEEEEEc------CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCC
Confidence 4788888632 1379999999999999986 999999999999988764
No 21
>KOG0609|consensus
Probab=98.23 E-value=2.5e-06 Score=69.52 Aligned_cols=65 Identities=26% Similarity=0.325 Sum_probs=54.7
Q ss_pred cceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCCC
Q psy4600 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYSP 108 (108)
Q Consensus 38 ~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s~ 108 (108)
...+..|.+.|..+ ..||.+++--... .+||.+|..||.|++.|.|++||+|++|||+++.+.+|
T Consensus 120 ~~~vriv~i~k~~~-eplG~Tik~~e~~-----~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~ 184 (542)
T KOG0609|consen 120 VEAVRIVRIVKNTG-EPLGATIRVEEDT-----KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSP 184 (542)
T ss_pred cceeEEEEEeecCC-CccceEEEeccCC-----ccEEeeeccCCcchhccceeeccchheecCeecccCCH
Confidence 34567788888865 7999999743221 59999999999999999999999999999999998765
No 22
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.19 E-value=4.5e-06 Score=51.12 Aligned_cols=34 Identities=15% Similarity=0.025 Sum_probs=31.2
Q ss_pred cEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 71 GIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 71 gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
++.|..|.++++|+..| |++||.|++|||..+.+
T Consensus 13 ~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~ 46 (80)
T cd00990 13 LGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA 46 (80)
T ss_pred cEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH
Confidence 69999999999999988 99999999999997753
No 23
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.12 E-value=6.2e-06 Score=50.19 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=31.2
Q ss_pred cEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 71 GIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 71 gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
++.|..|.++++|++.| |++||.|++|||..+.+
T Consensus 13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~ 46 (79)
T cd00989 13 EPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS 46 (79)
T ss_pred CcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC
Confidence 58999999999999887 99999999999998764
No 24
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.09 E-value=7.2e-06 Score=50.75 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=32.0
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.|+.|..|.++++|++.| |+.||.|++|||..+.+
T Consensus 10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~ 44 (79)
T cd00991 10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITT 44 (79)
T ss_pred CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCC
Confidence 489999999999999887 99999999999998864
No 25
>KOG3552|consensus
Probab=98.07 E-value=3.1e-06 Score=72.78 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=46.6
Q ss_pred EEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 41 ~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
++.|++++.+ .|||-++.| .++.|..|.+||+++ |.|++||+||+|||.++.+.+
T Consensus 56 pr~vq~~r~~---~lGFgfvag-------rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~dap 110 (1298)
T KOG3552|consen 56 PRQVQLQRNA---SLGFGFVAG-------RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAP 110 (1298)
T ss_pred chhhhhhccc---cccceeecC-------CceEEEEecCCCCcc--ccccCCCeEEEecCccccccc
Confidence 6678888875 777777766 279999999999996 899999999999999987653
No 26
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.91 E-value=2.1e-05 Score=48.80 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=32.1
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.+++|..|.++++|++.| |+.||.|++|||..+.+
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~ 58 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKS 58 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCC
Confidence 389999999999999887 99999999999998865
No 27
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.91 E-value=2.4e-05 Score=48.09 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=30.2
Q ss_pred cEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 71 GIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 71 gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
|+.|..|.++++|+. + |++||.|++|||..+.+
T Consensus 9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~ 41 (79)
T cd00986 9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE 41 (79)
T ss_pred CEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC
Confidence 799999999999986 6 99999999999998864
No 28
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.90 E-value=3.3e-05 Score=61.03 Aligned_cols=53 Identities=21% Similarity=0.242 Sum_probs=40.7
Q ss_pred CcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 53 KGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 53 ~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.|+|+.+.-.........++.|..|.+++||++.| |+.||+|++|||+++.+.
T Consensus 85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~ 137 (389)
T PLN00049 85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGL 137 (389)
T ss_pred eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCC
Confidence 57888875322110011378999999999999998 999999999999999764
No 29
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.81 E-value=4.3e-05 Score=58.98 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=39.6
Q ss_pred CcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 53 KGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 53 ~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.++|+.+.-- +.+++|..|.+++||++.| |+.||+|++|||..+.+.
T Consensus 51 ~~lG~~~~~~------~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~ 97 (334)
T TIGR00225 51 EGIGIQVGMD------DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGM 97 (334)
T ss_pred EEEEEEEEEE------CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCC
Confidence 5788887531 1279999999999999998 999999999999998764
No 30
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.62 E-value=9.8e-05 Score=58.88 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=42.7
Q ss_pred CcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 53 KGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 53 ~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.|+|..+.-... .++.|....+++||++.| |++||+|+.|||.++.+++
T Consensus 100 ~GiG~~i~~~~~-----~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~ 148 (406)
T COG0793 100 GGIGIELQMEDI-----GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVS 148 (406)
T ss_pred cceeEEEEEecC-----CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCC
Confidence 688888874321 379999999999999999 9999999999999999876
No 31
>KOG3605|consensus
Probab=97.44 E-value=0.00016 Score=60.55 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=41.7
Q ss_pred EEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 41 ~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
+.+|.+.|-.-.--|||++.-| .|-.+..||.|+|.| +|+|.||++|||+++.-+
T Consensus 737 V~~V~I~RPd~kyQLGFSVQNG----------iICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~ 791 (829)
T KOG3605|consen 737 VTTVLIRRPDLRYQLGFSVQNG----------IICSLLRGGIAERGG-VRVGHRIIEINGQSVVAT 791 (829)
T ss_pred ceEEEeecccchhhccceeeCc----------EeehhhcccchhccC-ceeeeeEEEECCceEEec
Confidence 4455555443223699999754 567788999999976 999999999999998643
No 32
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.38 E-value=0.00024 Score=56.51 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=32.6
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.+++|..|.++++|++.| |+.||+|++|||..+.+
T Consensus 257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~ 291 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISS 291 (428)
T ss_pred CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCC
Confidence 589999999999999988 99999999999998864
No 33
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.31 E-value=0.00038 Score=58.72 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=34.5
Q ss_pred CcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECC
Q psy4600 53 KGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNK 100 (108)
Q Consensus 53 ~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG 100 (108)
.|+|+.+.-- +..++|..|.|||||++.+.|++||+|++||+
T Consensus 244 ~GIGa~l~~~------~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~ 285 (667)
T PRK11186 244 EGIGAVLQMD------DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQ 285 (667)
T ss_pred eEEEEEEEEe------CCeEEEEEccCCChHHHhCCCCCCCEEEEECC
Confidence 5788877531 12689999999999999866999999999993
No 34
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.23 E-value=0.00041 Score=55.19 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=33.1
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.+++|..|.++++|++.| |++||.|++|||+.+.++
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s~ 397 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSSV 397 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCH
Confidence 589999999999999988 999999999999988753
No 35
>PRK10139 serine endoprotease; Provisional
Probab=97.13 E-value=0.00068 Score=54.73 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=32.3
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.|++|..|.++++|++.| |+.||.|++|||+.+.+
T Consensus 290 ~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s 324 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNS 324 (455)
T ss_pred CceEEEEECCCChHHHCC-CCCCCEEEEECCEECCC
Confidence 489999999999999987 99999999999998764
No 36
>PRK10898 serine endoprotease; Provisional
Probab=97.12 E-value=0.00074 Score=52.79 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=32.4
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.+++|..|.++++|++.| |+.||.|++|||+.+.+
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s 313 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAIS 313 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCC
Confidence 589999999999999987 99999999999998754
No 37
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.09 E-value=0.00076 Score=50.89 Aligned_cols=36 Identities=11% Similarity=0.008 Sum_probs=33.1
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.|+.|..+.++++|++.| |+.||.|++|||+++.+.
T Consensus 191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~ 226 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDP 226 (259)
T ss_pred eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCH
Confidence 489999999999999998 999999999999998753
No 38
>PRK10139 serine endoprotease; Provisional
Probab=97.08 E-value=0.00078 Score=54.40 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=32.4
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.+++|..|.++++|++.| |++||.|++|||+.+.+
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~ 424 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNS 424 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC
Confidence 489999999999999988 99999999999998864
No 39
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.05 E-value=0.00073 Score=52.73 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=32.3
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.+++|..|.++++|++.| |+.||.|++|||+.+.+
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s 312 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIG 312 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCC
Confidence 489999999999999987 99999999999998764
No 40
>PRK10942 serine endoprotease; Provisional
Probab=97.04 E-value=0.00095 Score=54.14 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=32.8
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.|++|..|.++++|++.| |+.||.|++|||..+.+.
T Consensus 311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~ 346 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF 346 (473)
T ss_pred CceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCH
Confidence 589999999999999988 999999999999988653
No 41
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.01 E-value=0.00095 Score=53.27 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=31.9
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.++.|..|.++++|++.| |++||+|++|||+.+.+
T Consensus 203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s 237 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRS 237 (420)
T ss_pred cCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCC
Confidence 368999999999999988 99999999999998864
No 42
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=96.97 E-value=0.002 Score=44.45 Aligned_cols=53 Identities=19% Similarity=0.001 Sum_probs=36.9
Q ss_pred CcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCC-CCeEEEECCeecccC
Q psy4600 53 KGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE-DTDYKISNKITTSEY 106 (108)
Q Consensus 53 ~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~-GD~il~VNG~~l~~~ 106 (108)
+-||+++.=-........+.-|.+|.|++||++.| |.+ .|.|+.+++..+.+.
T Consensus 26 g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~ 79 (138)
T PF04495_consen 26 GLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDE 79 (138)
T ss_dssp SSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--ST
T ss_pred CCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCH
Confidence 56899987544443445689999999999999998 776 799999999777643
No 43
>PRK10942 serine endoprotease; Provisional
Probab=96.95 E-value=0.0012 Score=53.55 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=32.8
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.+++|..|.++++|++.| |++||.|++|||+.+.+.
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s~ 443 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKNI 443 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCH
Confidence 489999999999999988 999999999999988653
No 44
>KOG3938|consensus
Probab=96.83 E-value=0.00084 Score=51.26 Aligned_cols=60 Identities=15% Similarity=0.152 Sum_probs=50.2
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
...+|.+.|+. +.||++|.. +..+ -.||++|.+++...+--.+++||.|=+|||+++.+.
T Consensus 126 q~kEv~v~Kse--dalGlTITD---NG~G--yAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~ 185 (334)
T KOG3938|consen 126 QAKEVEVVKSE--DALGLTITD---NGAG--YAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGK 185 (334)
T ss_pred cceeEEEEecc--cccceEEee---CCcc--eeeeEeecCCchhhhhhheeHHhHHHhhcCccccch
Confidence 55678899987 799999963 3222 369999999999998888999999999999998763
No 45
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=96.80 E-value=0.0017 Score=52.20 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=31.3
Q ss_pred cEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 71 GIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 71 gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
+..|..|.++++|++.| |++||+|++|||+.+.+
T Consensus 222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s 255 (449)
T PRK10779 222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQ 255 (449)
T ss_pred CcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCC
Confidence 57999999999999988 99999999999998764
No 46
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=96.80 E-value=0.0011 Score=53.29 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=30.4
Q ss_pred EEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 72 IYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 72 i~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
-+|..|.+++||++.| |+.||.|++|||+.+.+
T Consensus 128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~ 160 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPD 160 (449)
T ss_pred ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCC
Confidence 4799999999999998 99999999999998865
No 47
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=96.61 E-value=0.0022 Score=51.23 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=31.7
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.+.+|..|.+++||++.| |+.||.|++|||..+.+
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~ 162 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPG 162 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCC
Confidence 367999999999999987 99999999999998764
No 48
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.32 E-value=0.0066 Score=50.02 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=34.9
Q ss_pred cccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCe
Q psy4600 54 GLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKI 101 (108)
Q Consensus 54 glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~ 101 (108)
.||+.+.- .. ....|+.|.++|||.+.| |.+||+|++|||.
T Consensus 452 ~LGl~v~~--~~----g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 452 YLGLKVKS--EG----GHEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred ccceEecc--cC----CeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 78888752 11 257999999999999998 9999999999999
No 49
>KOG3129|consensus
Probab=95.84 E-value=0.0099 Score=43.94 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=27.1
Q ss_pred cEEEEEeCCCChhcccCCCCCCCeEEEECCee
Q psy4600 71 GIYVKTIFPTGQAADTGSLKEDTDYKISNKIT 102 (108)
Q Consensus 71 gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~ 102 (108)
-++|..|.|++||++.| |++||+|+.+..+.
T Consensus 140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~ 170 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNVH 170 (231)
T ss_pred eEEEeecCCCChhhhhC-cccCceEEEecccc
Confidence 46999999999999987 99999999876553
No 50
>KOG4371|consensus
Probab=95.67 E-value=0.011 Score=52.11 Aligned_cols=64 Identities=22% Similarity=0.367 Sum_probs=54.5
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYSP 108 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s~ 108 (108)
..+.|.|.|.+. .++|+++.-...+ .++||..+.....|...|.+++||++....|+++.+.+|
T Consensus 1245 ~l~~~~~~~~p~-~~~~~~~~~~~~s----~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p 1308 (1332)
T KOG4371|consen 1245 PLISVMLLKKPM-ATLGLSLAKRTMS----DGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTP 1308 (1332)
T ss_pred hhhhheeeeccc-ccccccccccCcC----CceeeecccccccccccccccccceeeccCCccCCCCCh
Confidence 346678888876 8999998755433 489999999999999999999999999999999988776
No 51
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.028 Score=43.44 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=32.1
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.|++|..+.++++|++.| ++.||.|+++||..+.+
T Consensus 270 ~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~ 304 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVAS 304 (347)
T ss_pred CceEEEecCCCChHHHcC-CCCCCEEEEECCEEccC
Confidence 479999999999999998 99999999999998764
No 52
>KOG1945|consensus
Probab=94.84 E-value=0.016 Score=45.69 Aligned_cols=97 Identities=26% Similarity=0.381 Sum_probs=72.1
Q ss_pred eccCcchhhhcccccccccccceEEeecCCCCCcceEEEEEEEeCCCCCcccEEEec---CcCCCCCcccEEEEEeCCCC
Q psy4600 5 AFQEENEDQEQEEDEDEEEESQFCTLRRAGKSASFTITTVSFTKGPGFKGLGFSIVG---GKDSPKGIMGIYVKTIFPTG 81 (108)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~V~L~K~~~~~glGfsi~G---G~~~~~~~~gi~I~~v~pgg 81 (108)
+|..++++++.++.........--..++ ........+-+.++. .|+|+++.| |+.......++|+.+..+++
T Consensus 67 a~~ve~~~~~n~~t~~~a~~~~~e~~r~---~~~~~~~e~av~~~~--~g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~ 141 (377)
T KOG1945|consen 67 AFSVEDYDRKNEDTDPVASCAEYELERR---LERMDLFEVAVEKGA--EGLGVSIIGMGVGKKSGLEELGIFVKSATSGG 141 (377)
T ss_pred hhhhhhccccCCCccccccCCcccccch---hhccchhhhhccCCc--CCCCccccccccchhccchhhcceeecccccc
Confidence 5778889999877777666665444444 333455567777776 799999887 22223356789999999999
Q ss_pred hhcccCCCCCCCeEEEECCeecccC
Q psy4600 82 QAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 82 ~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
..+++|+..+-|...++.+.++..+
T Consensus 142 ~~~r~g~~sved~~~s~~~k~lp~v 166 (377)
T KOG1945|consen 142 AVHRDGRWSVEDVEVSVDSKSLPGV 166 (377)
T ss_pred cccccccccccccccccccCCCCCc
Confidence 9999999999999999888776544
No 53
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=94.64 E-value=0.1 Score=33.39 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=21.1
Q ss_pred cEEEEEeCCCC--------hhcccC-CCCCCCeEEEECCeeccc
Q psy4600 71 GIYVKTIFPTG--------QAADTG-SLKEDTDYKISNKITTSE 105 (108)
Q Consensus 71 gi~I~~v~pgg--------~A~~~G-~L~~GD~il~VNG~~l~~ 105 (108)
+.-|++|.++- |-.+-| .+++||.|++|||+.+..
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~ 56 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTA 56 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BT
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCC
Confidence 57788888873 333333 578999999999999864
No 54
>KOG1320|consensus
Probab=93.50 E-value=0.1 Score=42.71 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=32.5
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
++++|+.|.|++++...+ +..||+|+.|||+.+.++
T Consensus 398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~ 433 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL 433 (473)
T ss_pred eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeech
Confidence 478999999999999765 999999999999998875
No 55
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=93.16 E-value=0.15 Score=40.93 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=26.6
Q ss_pred cEEEEEeC--------CCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 71 GIYVKTIF--------PTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 71 gi~I~~v~--------pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
||+|.... .++||+..| |++||.|++|||..+..
T Consensus 106 GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s 147 (402)
T TIGR02860 106 GVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKN 147 (402)
T ss_pred EEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCC
Confidence 67775542 257888776 99999999999998764
No 56
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=92.59 E-value=0.16 Score=39.74 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=30.6
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.|||+..+..+++|. |.|+.||.|++|||+.+..
T Consensus 130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s 163 (342)
T COG3480 130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTS 163 (342)
T ss_pred eeEEEEEccCCcchh--ceeccCCeEEeeCCeecCC
Confidence 489999999999995 6899999999999998864
No 57
>KOG0606|consensus
Probab=92.35 E-value=0.25 Score=44.16 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=43.1
Q ss_pred EEEEEeCCCCCcccEEEe------cCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 43 TVSFTKGPGFKGLGFSIV------GGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 43 ~V~L~K~~~~~glGfsi~------GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.|.+.+.. .++||++. |..+ ..-.--.|-+|.++++|...| |+.+|.|+.|||+.+.++
T Consensus 629 pI~i~~~~--~~yGft~~airVy~Gd~d--~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl 693 (1205)
T KOG0606|consen 629 PITIHFSG--KKYGFTLRAIRVYMGDKD--VYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGL 693 (1205)
T ss_pred ceeeeccc--cccCceeeeEEEecCCcc--cceeeeeeeeecCCCCccccC-CCccceeEeccCcccchh
Confidence 37777776 79998764 3322 111113677899999998776 999999999999988765
No 58
>KOG1738|consensus
Probab=91.79 E-value=0.19 Score=42.35 Aligned_cols=48 Identities=21% Similarity=0.215 Sum_probs=41.2
Q ss_pred CcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 53 KGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 53 ~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.|||+.|.--.+. ..+|+.+.++++|.....|..||++++||+.-+.+
T Consensus 213 eglg~~I~Ssydg-----~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVg 260 (638)
T KOG1738|consen 213 EGLGLYIDSSYDG-----PHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVG 260 (638)
T ss_pred cCCceEEeeecCC-----ceeccccccCChHHHhhcccCccceeeeccccccc
Confidence 6899999755443 57999999999999999999999999999987654
No 59
>KOG1421|consensus
Probab=89.74 E-value=0.32 Score=41.87 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=28.4
Q ss_pred cEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 71 GIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 71 gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
-+.|..|.++|+|.+ .|+.||.|++||++.+.+
T Consensus 304 mLvV~~vL~~gpa~k--~Le~GDillavN~t~l~d 336 (955)
T KOG1421|consen 304 MLVVETVLPEGPAEK--KLEPGDILLAVNSTCLND 336 (955)
T ss_pred eEEEEEeccCCchhh--ccCCCcEEEEEcceehHH
Confidence 357888999999986 699999999999987654
No 60
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=87.75 E-value=0.6 Score=35.79 Aligned_cols=19 Identities=16% Similarity=0.013 Sum_probs=17.0
Q ss_pred CCCCCCeEEEECCeecccC
Q psy4600 88 SLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 88 ~L~~GD~il~VNG~~l~~~ 106 (108)
.|+.||.+++|||.+|.+.
T Consensus 224 GLq~GDva~sING~dL~D~ 242 (276)
T PRK09681 224 GFKEGDIAIALNQQDFTDP 242 (276)
T ss_pred CCCCCCEEEEeCCeeCCCH
Confidence 4999999999999999764
No 61
>KOG3532|consensus
Probab=84.80 E-value=1.2 Score=38.55 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=37.0
Q ss_pred CcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 53 KGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 53 ~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
..+|+...- .+...+-|-.|.++.+|.+.. +++||.|++|||++++.
T Consensus 386 ~~ig~vf~~-----~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~s 432 (1051)
T KOG3532|consen 386 SPIGLVFDK-----NTNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIRS 432 (1051)
T ss_pred CceeEEEec-----CCceEEEEEEecCCChhhHhc-CCCcceEEEecCccchh
Confidence 455665542 234578999999999999875 99999999999998763
No 62
>PF12812 PDZ_1: PDZ-like domain
Probab=81.60 E-value=2.7 Score=26.06 Aligned_cols=35 Identities=11% Similarity=-0.041 Sum_probs=26.8
Q ss_pred cEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 71 GIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 71 gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
++++.....++++... .+..|-.|.+||++.+.++
T Consensus 31 ~gv~v~~~~g~~~~~~-~i~~g~iI~~Vn~kpt~~L 65 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAG-GISKGFIITSVNGKPTPDL 65 (78)
T ss_pred CEEEEEecCCChhhhC-CCCCCeEEEeECCcCCcCH
Confidence 3555566777777654 4999999999999988765
No 63
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=80.03 E-value=4.6 Score=30.72 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=18.9
Q ss_pred hhcccCCCCCCCeEEEECCeeccc
Q psy4600 82 QAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 82 ~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.-...| |+.||..+++|+.++++
T Consensus 219 lF~~sg-lq~GDIavaiNnldltd 241 (275)
T COG3031 219 LFYKSG-LQRGDIAVAINNLDLTD 241 (275)
T ss_pred hhhhhc-CCCcceEEEecCcccCC
Confidence 445555 99999999999999875
No 64
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=74.73 E-value=4.7 Score=31.09 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=27.9
Q ss_pred EEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 73 YVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 73 ~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.+..+...++|+..+ +++||+++++|+..+...
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~ 164 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVASW 164 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEccCH
Confidence 344788999999988 999999999999987653
No 65
>KOG4407|consensus
Probab=71.99 E-value=6.7 Score=36.46 Aligned_cols=35 Identities=3% Similarity=-0.034 Sum_probs=30.1
Q ss_pred cEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 71 GIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 71 gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
-+|+..+..++++...| ++.+|.|.-|||....+.
T Consensus 97 s~~~~Q~~s~~~~~nsG-~~s~~~v~~itG~e~~~~ 131 (1973)
T KOG4407|consen 97 STNWPQEASSAAGSNSG-SSSSVGVAGITGLEPTSP 131 (1973)
T ss_pred ccccchhcccCcccccC-cccccceeeecccccCCC
Confidence 57999999999998887 999999999999876543
No 66
>KOG1421|consensus
Probab=68.29 E-value=6.3 Score=34.31 Aligned_cols=33 Identities=12% Similarity=-0.071 Sum_probs=24.9
Q ss_pred cEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 71 GIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 71 gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
-+.|+++.+.-.- -|..||.||+|||..++.++
T Consensus 772 l~~ishv~~~~~k----il~~gdiilsvngk~itr~~ 804 (955)
T KOG1421|consen 772 LYVISHVRPLLHK----ILGVGDIILSVNGKMITRLS 804 (955)
T ss_pred EEEEEeeccCccc----ccccccEEEEecCeEEeeeh
Confidence 3567788776443 38899999999999877554
No 67
>KOG4407|consensus
Probab=67.91 E-value=2.2 Score=39.45 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=30.7
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.-|||+.|.+.|+|+.. .|+.||+++.||.....++
T Consensus 143 eT~~~~eV~~n~~~~~a-~LQ~~~~V~~v~~q~~A~i 178 (1973)
T KOG4407|consen 143 ETIFIKEVQANGPAHYA-NLQTGDRVLMVNNQPIAGI 178 (1973)
T ss_pred hhhhhhhhccCChhHHH-hhhccceeEEeecCcccch
Confidence 35799999999999976 5999999999998766543
No 68
>KOG2921|consensus
Probab=66.24 E-value=6.5 Score=32.02 Aligned_cols=37 Identities=8% Similarity=0.004 Sum_probs=31.2
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.++.|+.|...+|+.--..|.+||.|.++||..+..+
T Consensus 220 ~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v 256 (484)
T KOG2921|consen 220 EGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKV 256 (484)
T ss_pred ceEEEEeccccCCCcCcccCCccceEEecCCcccCCH
Confidence 3788888888888876667999999999999988754
No 69
>KOG0792|consensus
Probab=64.46 E-value=6 Score=35.64 Aligned_cols=61 Identities=26% Similarity=0.288 Sum_probs=45.5
Q ss_pred EEEEeCCCCCcccEEEecCcCCC--CCcccEEEEEeC-------------CCChhcc-cCCCCCCCeEEEECCeeccc
Q psy4600 44 VSFTKGPGFKGLGFSIVGGKDSP--KGIMGIYVKTIF-------------PTGQAAD-TGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 44 V~L~K~~~~~glGfsi~GG~~~~--~~~~gi~I~~v~-------------pgg~A~~-~G~L~~GD~il~VNG~~l~~ 105 (108)
+.|...+ .+-+||.+.||.+.. .-..++-+++++ |+..|+. .-++..||+++.+||.+...
T Consensus 708 ~~~~~~~-~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~ 784 (1144)
T KOG0792|consen 708 SYLAEDP-PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSE 784 (1144)
T ss_pred cccccCC-CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeeccccccc
Confidence 4555554 267999999998763 234578888888 7777743 34789999999999987654
No 70
>KOG4024|consensus
Probab=56.69 E-value=53 Score=24.74 Aligned_cols=91 Identities=18% Similarity=0.111 Sum_probs=51.5
Q ss_pred eeeccCcchhhhcccccccccccceEEeecCCCCCcceEEEEEEEeCCCCCcccE--EEecCcCCCC-CcccEEEEEeCC
Q psy4600 3 TFAFQEENEDQEQEEDEDEEEESQFCTLRRAGKSASFTITTVSFTKGPGFKGLGF--SIVGGKDSPK-GIMGIYVKTIFP 79 (108)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~V~L~K~~~~~glGf--si~GG~~~~~-~~~gi~I~~v~p 79 (108)
+|..++.=+-.++-|++..+.+......+. ...++|.+.|+. +.|-| .+..+..++. -+..|++-.+
T Consensus 123 ~FNvNhsvd~~e~~e~ePsq~~~~~pe~tS------~P~F~VeiiKG~--~~L~f~c~~~~~e~QedEy~~~~~~~~~-- 192 (266)
T KOG4024|consen 123 VFNVNHSVDMDEGFEDEPSQAVAPVPEATS------MPPFTVEIIKGD--QRLCFHCELVPVEDQEDEYDFRVEEFYV-- 192 (266)
T ss_pred EEecCCccCcccCCccCccccCCCCccccc------CCCeEEEEEeCC--eeEEEEeecCCcccCcccccceeeeEEe--
Confidence 344444444444444444444333333333 345789999976 56554 5665555421 1223454444
Q ss_pred CChhcccCCCCCCCeEEEECCeecc
Q psy4600 80 TGQAADTGSLKEDTDYKISNKITTS 104 (108)
Q Consensus 80 gg~A~~~G~L~~GD~il~VNG~~l~ 104 (108)
.+-+..|.-..-|.+.++||-.+.
T Consensus 193 -a~f~~~gn~~~~d~vYa~~gd~lD 216 (266)
T KOG4024|consen 193 -APFAKNGNEDVPDEVYASSGDYLD 216 (266)
T ss_pred -eecccCCCccCCcceeeccCcccC
Confidence 345567777788999999997664
No 71
>KOG3834|consensus
Probab=55.41 E-value=47 Score=27.31 Aligned_cols=47 Identities=17% Similarity=-0.066 Sum_probs=32.3
Q ss_pred ccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEE-CCe
Q psy4600 55 LGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKIS-NKI 101 (108)
Q Consensus 55 lGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~V-NG~ 101 (108)
||.+|+=.........--.|-+|.+.++|++.|....+|-|+-+ +.+
T Consensus 94 lGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~ 141 (462)
T KOG3834|consen 94 LGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAV 141 (462)
T ss_pred cceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhh
Confidence 88888632221112223478899999999999965689999876 543
No 72
>KOG3834|consensus
Probab=43.50 E-value=18 Score=29.61 Aligned_cols=35 Identities=17% Similarity=-0.052 Sum_probs=31.7
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeecc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTS 104 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~ 104 (108)
.+..|-+|..+++|++.|..---|-|++|||..|.
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~ 49 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLN 49 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCccccc
Confidence 47889999999999999988889999999998875
No 73
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=42.32 E-value=56 Score=23.64 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=29.1
Q ss_pred ccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEE
Q psy4600 55 LGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKIS 98 (108)
Q Consensus 55 lGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~V 98 (108)
.|+.+.. .+ ..+.|..+..|++|++.| +.-+.+|.+|
T Consensus 113 ~GL~l~~-----e~-~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v 149 (183)
T PF11874_consen 113 AGLTLME-----EG-GKVIVDEVEFGSPAEKAG-IDFDWEITEV 149 (183)
T ss_pred CCCEEEe-----eC-CEEEEEecCCCCHHHHcC-CCCCcEEEEE
Confidence 4676653 11 258999999999999988 8989988876
No 74
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=40.43 E-value=20 Score=23.96 Aligned_cols=21 Identities=24% Similarity=0.093 Sum_probs=15.5
Q ss_pred eCCCChhcccCCCCCCCeEEEEC
Q psy4600 77 IFPTGQAADTGSLKEDTDYKISN 99 (108)
Q Consensus 77 v~pgg~A~~~G~L~~GD~il~VN 99 (108)
|+-+|+|++ ..++||+|+-..
T Consensus 68 I~lNGAAAr--~~~~GD~vII~s 88 (111)
T cd06919 68 ICLNGAAAR--LGQPGDRVIIMA 88 (111)
T ss_pred EEeCCHHHh--cCCCCCEEEEEE
Confidence 456788887 468999997543
No 75
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=38.27 E-value=22 Score=24.23 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=15.5
Q ss_pred eCCCChhcccCCCCCCCeEEEEC
Q psy4600 77 IFPTGQAADTGSLKEDTDYKISN 99 (108)
Q Consensus 77 v~pgg~A~~~G~L~~GD~il~VN 99 (108)
|+-+|+|++ ..++||+|+-+.
T Consensus 69 I~lNGAAAr--~~~~GD~vII~a 89 (126)
T PRK05449 69 ICLNGAAAR--LVQVGDLVIIAA 89 (126)
T ss_pred EEeCCHHHh--cCCCCCEEEEEE
Confidence 456788887 468999997543
No 76
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=37.53 E-value=33 Score=27.90 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=26.2
Q ss_pred EEEEeCCCChhcccCCCCCCCeEEEEC-CeecccCCC
Q psy4600 73 YVKTIFPTGQAADTGSLKEDTDYKISN-KITTSEYSP 108 (108)
Q Consensus 73 ~I~~v~pgg~A~~~G~L~~GD~il~VN-G~~l~~~s~ 108 (108)
-|+++-+...|+.+| .+.||-++.|| +.....+.|
T Consensus 4 ~i~~v~~~~~~d~~G-fe~~~~l~~Vn~~~~~~~c~~ 39 (414)
T COG1625 4 KISKVGGISGADCDG-FEEGDYLLKVNPGFGCKDCIP 39 (414)
T ss_pred ceeeccCCCcccccC-ccccceeeecCCCCCCCcCCC
Confidence 466777777888777 88888888888 766665543
No 77
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=35.89 E-value=23 Score=23.77 Aligned_cols=31 Identities=13% Similarity=0.075 Sum_probs=11.7
Q ss_pred CcccEEEEEeCCCChhcccCCCCCCCeEEEECCee
Q psy4600 68 GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKIT 102 (108)
Q Consensus 68 ~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~ 102 (108)
.+.|+|+.. .+ --..+.|++||+|+..+|..
T Consensus 60 ~~HPF~~~~---~g-Wv~A~~L~~GD~L~~~~G~~ 90 (130)
T PF07591_consen 60 PNHPFWVEG---KG-WVEAEDLKVGDRLLTADGSW 90 (130)
T ss_dssp ----------------EEGGG--TTSEEEEE-SSE
T ss_pred cccccccch---Hh-hhhHhhCCCCCEEEcCCCCE
Confidence 345777753 11 22234699999999999864
No 78
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=35.38 E-value=27 Score=23.85 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=15.6
Q ss_pred eCCCChhcccCCCCCCCeEEEEC
Q psy4600 77 IFPTGQAADTGSLKEDTDYKISN 99 (108)
Q Consensus 77 v~pgg~A~~~G~L~~GD~il~VN 99 (108)
|+-+|+|++ ..++||+|+-+.
T Consensus 69 I~lNGAAAr--l~~~GD~VII~s 89 (126)
T TIGR00223 69 ICVNGAAAR--CVSVGDIVIIAS 89 (126)
T ss_pred EEeCCHHHh--cCCCCCEEEEEE
Confidence 456788887 468999997543
No 79
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=33.74 E-value=23 Score=23.88 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=12.2
Q ss_pred CCCChhcccCCCCCCCeEEEE
Q psy4600 78 FPTGQAADTGSLKEDTDYKIS 98 (108)
Q Consensus 78 ~pgg~A~~~G~L~~GD~il~V 98 (108)
+-+|+|++ ..++||+|+-+
T Consensus 70 ~lNGaAAr--l~~~GD~vII~ 88 (116)
T PF02261_consen 70 CLNGAAAR--LVQVGDRVIIM 88 (116)
T ss_dssp EEEGGGGG--CS-TT-EEEEE
T ss_pred EECCHHHh--ccCCCCEEEEE
Confidence 45688887 46799998744
No 80
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=33.26 E-value=25 Score=23.93 Aligned_cols=22 Identities=23% Similarity=0.092 Sum_probs=16.4
Q ss_pred eCCCChhcccCCCCCCCeEEEECC
Q psy4600 77 IFPTGQAADTGSLKEDTDYKISNK 100 (108)
Q Consensus 77 v~pgg~A~~~G~L~~GD~il~VNG 100 (108)
|+.+|+|++ ..++||+++-..-
T Consensus 68 I~lNGAAAr--l~~~GD~VII~sy 89 (126)
T COG0853 68 ICLNGAAAR--LVQVGDLVIIMSY 89 (126)
T ss_pred EEechHHHh--hCCCCCEEEEEEc
Confidence 467789987 4689999976543
No 81
>KOG3369|consensus
Probab=30.95 E-value=28 Score=25.28 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=20.3
Q ss_pred hhcccCCCCCCCeEEEECCeecccCC
Q psy4600 82 QAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 82 ~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
-+.++| +++|--+.+|||.++.+..
T Consensus 46 f~~kdg-ik~~~~~~~vNg~~v~g~~ 70 (199)
T KOG3369|consen 46 FGSKDG-IKVGHLVQAVNGENVNGYI 70 (199)
T ss_pred eecccc-cchhheeeeecccccccce
Confidence 356777 9999999999999887643
No 82
>KOG4371|consensus
Probab=29.74 E-value=30 Score=31.58 Aligned_cols=57 Identities=12% Similarity=0.195 Sum_probs=39.2
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
..+.+.+.+.+ ..||..|+--.. .+-|+.....++..+- -|++||-|+.+||+.+++
T Consensus 1147 ~~i~~~~~r~~--~~l~~~~a~~~~------~~~~~~~~~~~~~~~p-d~~~g~~l~~~n~i~~~~ 1203 (1332)
T KOG4371|consen 1147 RVIDVELDRNE--GSLGVQIASLSG------RVCIKQLTSEPAISHP-DIRVGDVLLYVNGIAVEG 1203 (1332)
T ss_pred ccccccCCCCC--CCCCceeccCcc------ceehhhcccCCCCCCC-Ccchhhhhhhccceeeec
Confidence 34566777776 589988864221 3556666666655554 499999999999987654
No 83
>PRK03760 hypothetical protein; Provisional
Probab=28.49 E-value=38 Score=22.48 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=17.7
Q ss_pred cEEEEEeCCCChhcccCCCCCCCeEE
Q psy4600 71 GIYVKTIFPTGQAADTGSLKEDTDYK 96 (108)
Q Consensus 71 gi~I~~v~pgg~A~~~G~L~~GD~il 96 (108)
.-||-.+ +.|.+++.| +++||+|.
T Consensus 90 a~~VLEl-~aG~~~~~g-i~~Gd~v~ 113 (117)
T PRK03760 90 ARYIIEG-PVGKIRVLK-VEVGDEIE 113 (117)
T ss_pred ceEEEEe-CCChHHHcC-CCCCCEEE
Confidence 4588887 555666666 99999984
No 84
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=25.76 E-value=34 Score=22.90 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=20.3
Q ss_pred cEEEEEeCCCChhcccCCCCCCCeEEEE
Q psy4600 71 GIYVKTIFPTGQAADTGSLKEDTDYKIS 98 (108)
Q Consensus 71 gi~I~~v~pgg~A~~~G~L~~GD~il~V 98 (108)
-+....+++.+.|. .-.|++||.+|+-
T Consensus 39 ~v~~~~iI~~~~~~-~~~L~~GD~VLA~ 65 (124)
T PF15057_consen 39 EVPISDIIALSDAM-RHSLQVGDKVLAP 65 (124)
T ss_pred EeChHHeEEccCcc-cCcCCCCCEEEEe
Confidence 45556677777776 5679999999986
No 85
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=25.07 E-value=43 Score=26.72 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=18.3
Q ss_pred hhcccCCCCCCCeEEEECCeec
Q psy4600 82 QAADTGSLKEDTDYKISNKITT 103 (108)
Q Consensus 82 ~A~~~G~L~~GD~il~VNG~~l 103 (108)
.++.-|.|++||.+|.|-|.+-
T Consensus 97 ~~aLfg~LRpgDell~i~G~PY 118 (416)
T COG4100 97 ACALFGILRPGDELLYITGSPY 118 (416)
T ss_pred HHHHHhccCCCCeEEEecCCcc
Confidence 5566789999999999988653
No 86
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=23.83 E-value=1.4e+02 Score=23.50 Aligned_cols=47 Identities=17% Similarity=0.381 Sum_probs=29.5
Q ss_pred CcccEEEecCcCCCC---CcccEEEEEeCCCChhcccCCCCCCCeEEEEC
Q psy4600 53 KGLGFSIVGGKDSPK---GIMGIYVKTIFPTGQAADTGSLKEDTDYKISN 99 (108)
Q Consensus 53 ~glGfsi~GG~~~~~---~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VN 99 (108)
..||+-|+||.-.+. .-..+-|..+...-+.-+++.-++||.|+-+-
T Consensus 121 ~kfgvpivGGhthpd~~y~vl~v~i~gl~~~e~Ii~s~~Ak~GD~lI~~~ 170 (324)
T COG2144 121 RKFGVPIVGGHTHPDTPYCVLDVVIGGLIAEEPIITSGTAKPGDLLIFVG 170 (324)
T ss_pred HhcCCceecCccCCCCCCceeeeEEecccccccccccCCCCcCCEEEEEe
Confidence 578999999954332 12223344444444555577889999998753
No 87
>PF13403 Hint_2: Hint domain
Probab=23.67 E-value=64 Score=22.05 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=16.6
Q ss_pred CCCChhcccCCCCCCCeEEEECCe
Q psy4600 78 FPTGQAADTGSLKEDTDYKISNKI 101 (108)
Q Consensus 78 ~pgg~A~~~G~L~~GD~il~VNG~ 101 (108)
.+.|....+ .|++||+++..+|-
T Consensus 11 T~~G~~~Ve-~L~~GD~V~T~dgg 33 (147)
T PF13403_consen 11 TPDGPRPVE-DLRPGDRVLTRDGG 33 (147)
T ss_pred cCCcCeEee-ccCCCCEEEecCCC
Confidence 355655555 49999999998653
No 88
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=23.63 E-value=59 Score=20.28 Aligned_cols=15 Identities=27% Similarity=0.182 Sum_probs=12.7
Q ss_pred CCCCCCCeEEEECCe
Q psy4600 87 GSLKEDTDYKISNKI 101 (108)
Q Consensus 87 G~L~~GD~il~VNG~ 101 (108)
..|++||+++...|.
T Consensus 36 ~~L~~Gd~VvT~gGi 50 (84)
T TIGR00739 36 ESLKKGDKVLTIGGI 50 (84)
T ss_pred HhCCCCCEEEECCCe
Confidence 369999999988885
No 89
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=23.07 E-value=57 Score=21.33 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=13.3
Q ss_pred cCCCCCCCeEEEECCe
Q psy4600 86 TGSLKEDTDYKISNKI 101 (108)
Q Consensus 86 ~G~L~~GD~il~VNG~ 101 (108)
-..|++||+++...|+
T Consensus 50 ~~~Lk~Gd~VvT~gGi 65 (106)
T PRK05585 50 LSSLAKGDEVVTNGGI 65 (106)
T ss_pred HHhcCCCCEEEECCCe
Confidence 3469999999988885
No 90
>PTZ00067 40S ribosomal S23; Provisional
Probab=21.92 E-value=2.9e+02 Score=19.28 Aligned_cols=75 Identities=12% Similarity=-0.025 Sum_probs=38.3
Q ss_pred eEEeecCCCCCcceEEEEEEEeCCCCCcccEEEecCcCC--C-CCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeec
Q psy4600 27 FCTLRRAGKSASFTITTVSFTKGPGFKGLGFSIVGGKDS--P-KGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITT 103 (108)
Q Consensus 27 ~~~~~r~~~~~~~~~~~V~L~K~~~~~glGfsi~GG~~~--~-~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l 103 (108)
+.+.++.|.+.-..+..|.|.|.. .-+ +....|.+. . +...-+.|..+-..|-+-.|- --+--.++.|||++|
T Consensus 55 ~~~~pKkPNSA~RK~~rV~L~kng--k~v-tAyiPg~G~lh~lqEh~~VLV~G~Gr~g~~v~Dl-PGVrykvVrV~~vsL 130 (143)
T PTZ00067 55 IGIEAKQPNSAIRKCVRVQLIKNG--KKI-TAFVPNDGCLNFINENDEVLVSGFGRSGHAVGDI-PGVRFKVVKVAGVSL 130 (143)
T ss_pred EeecCCCCChhhceEEEEEEccCC--cEE-EEEeCCCCcccccccCCEEEEEecCcCCCccCCC-CceEEEEEEECCEeH
Confidence 344556555566677888888653 233 334445441 1 112235555443222222221 223345899999998
Q ss_pred cc
Q psy4600 104 SE 105 (108)
Q Consensus 104 ~~ 105 (108)
..
T Consensus 131 ~~ 132 (143)
T PTZ00067 131 LA 132 (143)
T ss_pred HH
Confidence 64
No 91
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=21.42 E-value=49 Score=20.93 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=10.4
Q ss_pred ccCCCCCCCeEEE
Q psy4600 85 DTGSLKEDTDYKI 97 (108)
Q Consensus 85 ~~G~L~~GD~il~ 97 (108)
++|.|+.||.|+.
T Consensus 23 ~~GtL~~Gd~iv~ 35 (95)
T cd03701 23 QNGTLKKGDVIVA 35 (95)
T ss_pred EcCeEecCCEEEE
Confidence 3678999999875
No 92
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=21.39 E-value=53 Score=21.78 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=11.0
Q ss_pred ccCCCCCCCeEEE
Q psy4600 85 DTGSLKEDTDYKI 97 (108)
Q Consensus 85 ~~G~L~~GD~il~ 97 (108)
.+|.|+.||.|+.
T Consensus 23 ~~GtL~~GD~Iv~ 35 (110)
T cd03703 23 YDGTLREGDTIVV 35 (110)
T ss_pred ECCeEecCCEEEE
Confidence 3788999999985
No 93
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=20.62 E-value=70 Score=21.18 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=12.8
Q ss_pred CCCCCCCeEEEECCe
Q psy4600 87 GSLKEDTDYKISNKI 101 (108)
Q Consensus 87 G~L~~GD~il~VNG~ 101 (108)
..|++||+++...|.
T Consensus 37 ~~Lk~GD~VvT~gGi 51 (109)
T PRK05886 37 ESLQPGDRVHTTSGL 51 (109)
T ss_pred HhcCCCCEEEECCCe
Confidence 369999999998885
No 94
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=20.21 E-value=67 Score=21.39 Aligned_cols=14 Identities=0% Similarity=0.152 Sum_probs=12.4
Q ss_pred CCCCCCeEEEECCe
Q psy4600 88 SLKEDTDYKISNKI 101 (108)
Q Consensus 88 ~L~~GD~il~VNG~ 101 (108)
.|++||+|+.+.|+
T Consensus 36 sLk~GD~VvT~GGi 49 (113)
T PRK06531 36 AIQKGDEVVTIGGL 49 (113)
T ss_pred hcCCCCEEEECCCc
Confidence 69999999988885
Done!