Query psy4600
Match_columns 108
No_of_seqs 152 out of 1061
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 21:06:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4600.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4600hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3egg_C Spinophilin; PP1, serin 99.6 2.3E-16 7.7E-21 110.7 6.5 100 3-107 46-148 (170)
2 1i16_A Interleukin 16, LCF; cy 99.6 8.8E-16 3E-20 102.8 8.1 71 35-107 24-94 (130)
3 3b76_A E3 ubiquitin-protein li 99.6 1.6E-15 5.3E-20 100.5 9.1 67 40-107 24-90 (118)
4 3gge_A PDZ domain-containing p 99.6 3.3E-15 1.1E-19 96.3 8.4 62 39-107 4-65 (95)
5 2awx_A Synapse associated prot 99.6 4.2E-15 1.4E-19 95.7 8.7 66 39-106 2-69 (105)
6 2iwo_A Multiple PDZ domain pro 99.6 1E-15 3.6E-20 101.4 5.7 70 37-107 21-90 (120)
7 1wf8_A Neurabin-I; PDZ domain, 99.6 7.6E-15 2.6E-19 94.8 9.3 70 36-107 5-77 (107)
8 2fne_A Multiple PDZ domain pro 99.6 2E-15 6.9E-20 99.6 6.6 67 39-107 24-90 (117)
9 2fe5_A Presynaptic protein SAP 99.6 8E-15 2.8E-19 92.2 9.1 66 39-106 2-69 (94)
10 1d5g_A Human phosphatase HPTP1 99.6 1.3E-14 4.3E-19 91.7 9.4 67 39-107 4-70 (96)
11 1um1_A KIAA1849 protein, RSGI 99.6 1.5E-14 5.1E-19 93.7 9.4 70 36-107 4-73 (110)
12 2i1n_A Discs, large homolog 3; 99.6 1.4E-14 4.9E-19 92.5 9.2 67 39-107 3-71 (102)
13 1wi4_A Synip, syntaxin binding 99.6 1.3E-14 4.6E-19 94.4 8.3 67 37-107 12-78 (109)
14 2jik_A Synaptojanin-2 binding 99.6 2.4E-14 8.1E-19 91.3 9.3 68 37-106 4-73 (101)
15 3axa_A Afadin, nectin-3, prote 99.6 1.4E-14 4.9E-19 93.2 8.3 68 37-107 8-75 (106)
16 2db5_A INAD-like protein; PDZ 99.6 8.2E-15 2.8E-19 97.4 7.3 68 39-107 24-92 (128)
17 2d92_A INAD-like protein; PDZ 99.6 1.1E-14 3.8E-19 94.3 7.6 66 40-107 15-81 (108)
18 2byg_A Channel associated prot 99.6 2E-14 6.9E-19 94.7 9.0 66 40-107 24-91 (117)
19 1wha_A KIAA0147 protein, scrib 99.5 1.8E-14 6.2E-19 92.7 8.0 70 36-107 3-75 (105)
20 1q7x_A PDZ2B domain of PTP-BAS 99.5 2.5E-14 8.6E-19 92.3 8.6 69 37-107 6-79 (108)
21 3cbz_A Dishevelled-2; PDZ doma 99.5 8.1E-15 2.8E-19 95.2 6.1 67 39-107 4-70 (108)
22 2q9v_A Membrane-associated gua 99.5 3.9E-14 1.3E-18 88.5 8.9 63 40-107 2-64 (90)
23 2vwr_A Ligand of NUMB protein 99.5 4.6E-14 1.6E-18 89.1 9.2 65 39-107 2-66 (95)
24 2qg1_A Multiple PDZ domain pro 99.5 4.6E-14 1.6E-18 88.5 8.6 64 39-107 3-66 (92)
25 2g5m_B Neurabin-2; spinophilin 99.5 2.3E-14 7.8E-19 93.2 7.2 67 39-107 3-72 (113)
26 1ujd_A KIAA0559 protein; PDZ d 99.5 4.7E-14 1.6E-18 92.6 8.5 71 37-107 9-86 (117)
27 1uhp_A Hypothetical protein KI 99.5 7.6E-14 2.6E-18 90.0 9.3 70 36-107 4-78 (107)
28 2o2t_A Multiple PDZ domain pro 99.5 2E-14 6.9E-19 94.0 6.5 69 38-107 18-87 (117)
29 2eno_A Synaptojanin-2-binding 99.5 7.4E-14 2.5E-18 91.8 9.2 68 38-107 15-84 (120)
30 2jil_A GRIP1 protein, glutamat 99.5 6.9E-14 2.3E-18 88.4 8.6 67 39-107 2-69 (97)
31 2ehr_A INAD-like protein; PDZ 99.5 5.8E-14 2E-18 91.9 8.5 68 39-107 14-87 (117)
32 1wfg_A Regulating synaptic mem 99.5 6.8E-14 2.3E-18 93.8 8.8 68 39-107 26-102 (131)
33 1ihj_A INAD; intermolecular di 99.5 7.2E-14 2.5E-18 88.5 8.3 67 39-106 4-73 (98)
34 2dc2_A GOPC, golgi associated 99.5 4.1E-14 1.4E-18 91.0 7.1 67 37-107 6-72 (103)
35 1ueq_A Membrane associated gua 99.5 8.8E-14 3E-18 92.0 8.8 68 35-107 14-81 (123)
36 1ufx_A KIAA1526 protein; PDZ d 99.5 3E-14 1E-18 92.0 6.2 64 40-107 6-69 (103)
37 1uep_A Membrane associated gua 99.5 7.5E-14 2.6E-18 89.6 8.0 67 36-107 5-71 (103)
38 1m5z_A GRIP, AMPA receptor int 99.5 2E-13 6.9E-18 85.3 9.3 65 37-106 3-67 (91)
39 3i4w_A Disks large homolog 4; 99.5 1.1E-13 3.7E-18 88.4 8.1 66 36-107 7-72 (104)
40 1uju_A Scribble; PDZ domain, c 99.5 2.3E-14 7.8E-19 93.0 4.9 71 36-107 5-81 (111)
41 1qav_A Alpha-1 syntrophin (res 99.5 7.3E-14 2.5E-18 87.3 6.9 65 39-107 3-67 (90)
42 4e34_A Golgi-associated PDZ an 99.5 7.9E-14 2.7E-18 86.6 6.6 64 40-107 2-65 (87)
43 3o46_A Maguk P55 subfamily mem 99.5 1.8E-13 6.1E-18 86.1 8.3 63 39-107 3-65 (93)
44 1kwa_A Hcask/LIN-2 protein; PD 99.5 1.4E-13 4.9E-18 86.3 7.7 61 41-107 2-62 (88)
45 1wg6_A Hypothetical protein (r 99.5 2.6E-14 9E-19 95.3 4.5 68 39-107 24-92 (127)
46 2daz_A INAD-like protein; PDZ 99.5 1.9E-13 6.5E-18 90.4 8.6 68 36-107 21-88 (124)
47 2h2b_A Tight junction protein 99.5 4.4E-13 1.5E-17 86.2 10.0 68 37-107 4-74 (107)
48 1g9o_A NHE-RF; PDZ domain, com 99.5 1.9E-13 6.4E-18 85.5 8.0 61 40-107 3-63 (91)
49 2dmz_A INAD-like protein; PDZ 99.5 2E-13 6.7E-18 90.7 8.4 71 36-107 11-83 (129)
50 4amh_A Disks large homolog 1; 99.5 1.4E-13 4.8E-18 89.0 7.3 55 53-107 13-69 (106)
51 2i04_A Membrane-associated gua 99.5 2.6E-13 8.7E-18 83.9 8.2 60 42-106 2-61 (85)
52 3hpk_A Protein interacting wit 99.5 3.2E-13 1.1E-17 89.3 9.2 65 39-107 18-82 (125)
53 2jre_A C60-1 PDZ domain peptid 99.5 3.4E-13 1.2E-17 86.8 9.1 71 36-106 8-80 (108)
54 3gsl_A Disks large homolog 4; 99.5 2.7E-13 9.3E-18 94.2 9.3 68 38-107 3-72 (196)
55 1x6d_A Interleukin-16; PDZ dom 99.5 1.8E-13 6.2E-18 89.7 7.5 67 38-107 13-79 (119)
56 2opg_A Multiple PDZ domain pro 99.5 5.1E-13 1.8E-17 84.5 9.2 64 40-107 4-67 (98)
57 3l4f_D SH3 and multiple ankyri 99.5 3E-13 1E-17 90.9 8.4 68 38-107 25-101 (132)
58 2dkr_A LIN-7 homolog B; LIN-7B 99.4 2.5E-13 8.7E-18 85.1 7.4 63 40-107 5-67 (93)
59 2r4h_A Membrane-associated gua 99.4 4.2E-13 1.4E-17 87.4 8.4 63 39-106 23-85 (112)
60 1r6j_A Syntenin 1; PDZ, membra 99.4 2.1E-13 7.3E-18 85.4 6.8 56 40-107 4-59 (82)
61 2koj_A Partitioning defective 99.4 6.8E-13 2.3E-17 85.8 9.4 69 36-106 7-75 (111)
62 2kpk_A Membrane-associated gua 99.4 4.5E-13 1.5E-17 89.4 8.4 68 35-107 13-80 (129)
63 2csj_A TJP2 protein; PDZ domai 99.4 3.6E-13 1.2E-17 88.2 7.3 66 39-107 13-81 (117)
64 2w4f_A Protein LAP4; structura 99.4 9E-13 3.1E-17 83.1 8.8 65 40-107 3-70 (97)
65 2djt_A Unnamed protein product 99.4 4.3E-13 1.5E-17 85.8 7.3 68 36-106 7-74 (104)
66 3nfk_A Tyrosine-protein phosph 99.4 3.6E-13 1.2E-17 86.6 6.8 66 38-107 15-81 (107)
67 2cs5_A Tyrosine-protein phosph 99.4 3.4E-13 1.2E-17 88.4 6.7 67 37-107 12-79 (119)
68 2ejy_A 55 kDa erythrocyte memb 99.4 7.3E-13 2.5E-17 85.1 8.0 63 39-107 11-73 (97)
69 1mfg_A ERB-B2 interacting prot 99.4 1.4E-12 4.9E-17 82.1 9.2 62 40-106 3-69 (95)
70 2he4_A Na(+)/H(+) exchange reg 99.4 9.2E-13 3.1E-17 82.3 8.1 60 40-106 4-63 (90)
71 1n7e_A AMPA receptor interacti 99.4 1.2E-12 4.1E-17 82.9 8.7 63 39-106 4-66 (97)
72 1uew_A Membrane associated gua 99.4 1.5E-12 5.3E-17 84.7 9.2 70 36-106 6-79 (114)
73 2la8_A Inactivation-NO-after-p 99.4 5.4E-13 1.8E-17 86.5 6.9 61 40-107 2-62 (106)
74 2ego_A General receptor for ph 99.4 1.2E-12 4E-17 82.8 8.3 66 39-106 3-72 (96)
75 1v62_A KIAA1719 protein; struc 99.4 6.8E-13 2.3E-17 87.1 7.4 67 38-107 13-79 (117)
76 2uzc_A Human pdlim5, PDZ and L 99.4 9.3E-13 3.2E-17 81.8 7.3 60 40-106 3-62 (88)
77 1x5q_A LAP4 protein; PDZ domai 99.4 3E-12 1E-16 82.7 9.8 68 37-107 12-82 (110)
78 2dlu_A INAD-like protein; PDZ 99.4 1.7E-12 5.8E-17 84.0 8.4 62 39-107 14-75 (111)
79 2qkv_A Inactivation-NO-after-p 99.4 8.7E-13 3E-17 83.7 6.8 65 36-107 4-68 (96)
80 1tp5_A Presynaptic density pro 99.4 1.3E-12 4.3E-17 85.6 7.7 65 37-107 11-75 (119)
81 2kom_A Partitioning defective 99.4 3.5E-12 1.2E-16 84.2 9.8 68 37-106 27-94 (121)
82 3r0h_A INAD, inactivation-NO-a 99.4 1.7E-12 5.9E-17 91.4 8.9 64 39-105 17-80 (206)
83 1z87_A Alpha-1-syntrophin; pro 99.4 3.5E-13 1.2E-17 100.4 5.3 68 36-107 73-140 (263)
84 1n7t_A 99-MER peptide of densi 99.4 1.3E-12 4.5E-17 83.5 7.1 67 36-107 7-78 (103)
85 1wi2_A Riken cDNA 2700099C19; 99.4 2.2E-12 7.6E-17 82.8 7.9 63 40-107 15-77 (104)
86 2v90_A PDZ domain-containing p 99.4 1.7E-12 6E-17 81.9 7.3 63 40-106 3-65 (96)
87 2iwn_A Multiple PDZ domain pro 99.4 3.1E-12 1E-16 80.3 8.3 67 39-107 3-70 (97)
88 3qe1_A Sorting nexin-27, G pro 99.4 3.1E-12 1.1E-16 82.1 8.4 66 39-107 5-79 (107)
89 2yt7_A Amyloid beta A4 precurs 99.4 5.4E-12 1.9E-16 80.6 9.5 69 37-107 6-74 (101)
90 1rgw_A ZAsp protein; PDZ, cyph 99.4 1.8E-12 6E-17 79.9 6.9 59 41-106 2-60 (85)
91 1v6b_A Harmonin isoform A1; st 99.4 1.9E-12 6.5E-17 85.1 7.4 63 40-107 18-80 (118)
92 3gsl_A Disks large homolog 4; 99.4 7.4E-12 2.5E-16 86.9 10.6 81 23-107 85-167 (196)
93 1q3o_A Shank1; PDZ, GKAP, pept 99.4 6.6E-12 2.2E-16 81.0 9.6 65 40-106 7-80 (109)
94 2q3g_A PDZ and LIM domain prot 99.4 2.6E-12 8.8E-17 80.0 7.3 60 40-106 3-62 (89)
95 1nf3_C PAR-6B; semi-CRIB motif 99.4 8.9E-13 3.1E-17 87.8 5.5 72 36-107 25-102 (128)
96 2vsp_A PDZ domain-containing p 99.4 6.8E-13 2.3E-17 83.1 4.6 61 40-107 3-63 (91)
97 1v5q_A GRIP1 homolog, glutamat 99.4 6.1E-12 2.1E-16 83.0 9.4 69 37-106 12-81 (122)
98 2pa1_A PDZ and LIM domain prot 99.3 3.2E-12 1.1E-16 79.3 7.4 58 44-106 4-61 (87)
99 3r68_A Na(+)/H(+) exchange reg 99.3 2.1E-12 7.3E-17 81.1 6.5 60 40-106 5-64 (95)
100 2d90_A PDZ domain containing p 99.3 3.2E-12 1.1E-16 81.5 7.1 62 38-106 4-65 (102)
101 3e17_A Tight junction protein 99.3 4.8E-12 1.7E-16 79.2 7.7 56 43-107 3-58 (88)
102 3k1r_A Harmonin; protein-prote 99.3 2.7E-12 9.1E-17 90.6 7.0 67 36-107 80-146 (192)
103 2gzv_A PRKCA-binding protein; 99.3 6.2E-12 2.1E-16 82.4 8.3 63 40-106 24-86 (114)
104 1wfv_A Membrane associated gua 99.3 7.3E-13 2.5E-17 84.4 3.5 67 36-107 7-73 (103)
105 1va8_A Maguk P55 subfamily mem 99.3 7.9E-12 2.7E-16 81.4 8.5 63 38-107 23-85 (113)
106 1p1d_A PDZ45, glutamate recept 99.3 7.5E-12 2.6E-16 88.1 8.6 67 39-106 5-72 (196)
107 2f5y_A Regulator of G-protein 99.3 8.5E-12 2.9E-16 78.1 7.9 57 40-106 3-59 (91)
108 2eei_A PDZ domain-containing p 99.3 2.5E-12 8.6E-17 82.4 5.5 63 37-106 5-67 (106)
109 1um7_A Synapse-associated prot 99.3 2.1E-12 7.1E-17 83.5 5.2 65 36-106 11-75 (113)
110 2jxo_A Ezrin-radixin-moesin-bi 99.3 1.2E-11 4.1E-16 78.2 8.6 60 40-106 9-68 (98)
111 2dm8_A INAD-like protein; PDZ 99.3 2.6E-12 8.8E-17 83.6 5.2 64 40-107 17-80 (116)
112 2fcf_A Multiple PDZ domain pro 99.3 1E-11 3.5E-16 79.1 7.8 67 40-107 4-76 (103)
113 2xkx_A Disks large homolog 4; 99.3 9.2E-12 3.2E-16 102.9 9.5 67 39-107 58-126 (721)
114 2e7k_A Maguk P55 subfamily mem 99.3 3E-12 1E-16 80.6 5.1 57 40-103 6-62 (91)
115 2iwq_A Multiple PDZ domain pro 99.3 1.1E-11 3.9E-16 82.2 8.0 67 40-107 24-96 (123)
116 1uez_A KIAA1526 protein; PDZ d 99.3 8.7E-12 3E-16 79.4 7.0 65 39-107 7-71 (101)
117 2dls_A PDZ-rhogef, RHO guanine 99.3 2.1E-11 7.3E-16 76.7 8.8 60 37-106 5-64 (93)
118 3sfj_A TAX1-binding protein 3; 99.3 1.3E-11 4.4E-16 78.8 7.7 53 54-107 20-81 (104)
119 2eeg_A PDZ and LIM domain prot 99.3 6.7E-12 2.3E-16 79.1 6.3 61 39-106 7-67 (94)
120 3ngh_A PDZ domain-containing p 99.3 9.5E-12 3.2E-16 79.7 7.0 60 42-107 3-62 (106)
121 2eeh_A PDZ domain-containing p 99.3 1.9E-11 6.4E-16 77.8 8.3 66 36-106 6-71 (100)
122 3bpu_A Membrane-associated gua 99.3 1.9E-11 6.6E-16 75.9 7.8 59 39-106 2-60 (88)
123 1wf7_A Enigma homologue protei 99.3 5.6E-12 1.9E-16 80.6 5.3 61 39-106 4-64 (103)
124 1wif_A RSGI RUH-020, riken cDN 99.3 7.7E-12 2.6E-16 83.9 6.1 63 36-106 23-85 (126)
125 1qau_A Neuronal nitric oxide s 99.3 3E-11 1E-15 78.0 8.7 61 41-106 2-62 (112)
126 2pkt_A PDZ and LIM domain prot 99.3 1.8E-11 6E-16 76.5 7.2 60 41-107 4-63 (91)
127 2qt5_A Glutamate receptor-inte 99.3 2.7E-11 9.1E-16 85.3 9.0 65 38-106 5-69 (200)
128 2lob_A Golgi-associated PDZ an 98.9 5E-13 1.7E-17 87.6 0.0 63 40-106 27-89 (112)
129 2kv8_A RGS12, regulator of G-p 99.2 4.9E-12 1.7E-16 77.8 4.1 57 40-106 2-58 (83)
130 1x5n_A Harmonin; PDZ domain, u 99.2 5E-11 1.7E-15 77.3 8.8 63 40-107 15-77 (114)
131 2edp_A Fragment, shroom family 99.2 9.3E-12 3.2E-16 79.4 5.1 61 41-105 10-70 (100)
132 3kzd_A TIAM-1, T-lymphoma inva 99.2 4.9E-11 1.7E-15 76.4 8.2 66 39-107 5-71 (94)
133 3r0h_A INAD, inactivation-NO-a 99.2 4.4E-11 1.5E-15 84.1 8.7 74 25-107 100-173 (206)
134 1uit_A Human discs large 5 pro 99.2 4.2E-11 1.4E-15 78.1 7.8 64 36-107 15-78 (117)
135 2kjd_A Sodium/hydrogen exchang 99.2 5.8E-11 2E-15 78.4 8.6 60 40-106 9-68 (128)
136 2vz5_A TAX1-binding protein 3; 99.2 4.6E-11 1.6E-15 80.8 7.8 69 38-107 21-100 (139)
137 2qbw_A PDZ-fibronectin fusion 99.2 3.6E-11 1.2E-15 84.0 7.5 53 53-107 2-59 (195)
138 3soe_A Membrane-associated gua 99.2 7.8E-11 2.7E-15 77.8 8.4 58 39-107 11-68 (113)
139 3khf_A Microtubule-associated 99.2 5E-11 1.7E-15 75.4 6.5 62 43-107 5-70 (99)
140 2z17_A Pleckstrin homology SEC 99.2 1E-10 3.5E-15 74.8 7.4 65 41-107 16-84 (104)
141 2vsv_A Rhophilin-2; scaffold p 99.1 9E-11 3.1E-15 76.7 6.2 57 40-106 23-79 (109)
142 2d8i_A T-cell lymphoma invasio 99.1 9.4E-11 3.2E-15 77.1 6.3 64 40-106 15-79 (114)
143 1vb7_A PDZ and LIM domain 2; P 99.1 2.4E-11 8.3E-16 76.5 3.2 50 53-106 16-65 (94)
144 2edz_A PDZ domain-containing p 99.1 1.5E-10 5.2E-15 75.2 7.0 61 40-106 13-73 (114)
145 1b8q_A Protein (neuronal nitri 99.1 6.6E-11 2.2E-15 78.2 5.1 64 38-106 6-69 (127)
146 2yuy_A RHO GTPase activating p 99.1 1.6E-11 5.6E-16 81.3 1.9 66 39-107 7-97 (126)
147 1ujv_A Membrane associated gua 99.1 6.6E-10 2.3E-14 70.4 8.7 61 36-107 6-66 (96)
148 2qt5_A Glutamate receptor-inte 99.1 1.1E-09 3.8E-14 76.9 10.4 66 40-107 106-172 (200)
149 1uf1_A KIAA1526 protein; PDZ d 99.1 6.3E-10 2.2E-14 73.6 8.6 63 40-107 20-82 (128)
150 1whd_A RGS3, regulator of G-pr 99.1 1.1E-10 3.7E-15 74.4 4.6 61 36-106 11-71 (100)
151 3tsv_A Tight junction protein 99.1 4.1E-10 1.4E-14 74.6 7.6 48 53-106 39-86 (124)
152 1y7n_A Amyloid beta A4 precurs 99.1 6.2E-10 2.1E-14 70.1 8.0 54 43-107 14-67 (90)
153 3shw_A Tight junction protein 99.1 2.7E-10 9.2E-15 90.7 7.7 58 41-107 2-59 (468)
154 2edv_A FERM and PDZ domain-con 99.1 8.3E-11 2.8E-15 74.5 3.5 59 39-106 7-65 (96)
155 3cyy_A Tight junction protein 99.1 8.8E-10 3E-14 68.5 7.9 58 41-107 3-60 (92)
156 2xkx_A Disks large homolog 4; 99.0 6.1E-10 2.1E-14 92.1 9.1 81 23-107 139-221 (721)
157 2eaq_A LIM domain only protein 99.0 1.3E-09 4.4E-14 67.6 8.5 58 40-104 3-61 (90)
158 3tsz_A Tight junction protein 99.0 4.6E-10 1.6E-14 87.3 7.7 59 40-107 9-67 (391)
159 1w9e_A Syntenin 1; cell adhesi 99.0 7.6E-10 2.6E-14 75.9 7.7 60 40-107 4-63 (166)
160 1v5l_A PDZ and LIM domain 3; a 99.0 9.6E-11 3.3E-15 74.9 2.8 59 41-106 6-64 (103)
161 2krg_A Na(+)/H(+) exchange reg 99.0 3.4E-10 1.2E-14 81.9 5.6 62 39-107 8-69 (216)
162 1wh1_A KIAA1095 protein; PDZ d 99.0 6.1E-10 2.1E-14 73.4 6.3 66 39-105 18-83 (124)
163 3suz_A Amyloid beta A4 precurs 99.0 2.4E-10 8.1E-15 88.6 4.2 66 40-107 204-269 (388)
164 2rcz_A Tight junction protein 98.9 5.5E-09 1.9E-13 63.1 7.9 46 53-107 13-58 (81)
165 1vae_A Rhophilin 2, rhophilin, 98.9 4.6E-10 1.6E-14 73.3 2.2 55 42-106 17-71 (111)
166 1p1d_A PDZ45, glutamate recept 98.8 1.4E-08 4.9E-13 71.1 7.3 65 40-106 107-171 (196)
167 3qik_A Phosphatidylinositol 3, 98.7 3.5E-08 1.2E-12 63.9 6.9 53 43-104 20-72 (101)
168 2yub_A LIMK-2, LIM domain kina 98.6 8.6E-08 2.9E-12 63.0 6.0 52 54-106 28-81 (118)
169 1w9e_A Syntenin 1; cell adhesi 98.3 1.9E-06 6.5E-11 58.8 7.4 54 41-106 89-142 (166)
170 3rle_A Golgi reassembly-stacki 98.2 8.4E-07 2.9E-11 63.0 4.4 49 54-106 3-52 (209)
171 3suz_A Amyloid beta A4 precurs 98.2 1.3E-07 4.6E-12 73.1 0.0 44 53-107 308-351 (388)
172 3i18_A LMO2051 protein; alpha- 98.2 2E-06 6.9E-11 54.4 5.1 34 70-105 7-40 (100)
173 2pzd_A Serine protease HTRA2; 98.2 2.2E-06 7.4E-11 55.0 4.7 36 69-105 34-69 (113)
174 2kjp_A Uncharacterized protein 98.2 4.1E-07 1.4E-11 57.1 1.2 33 71-105 2-34 (91)
175 2kl1_A YLBL protein; structure 98.2 1.1E-06 3.8E-11 55.2 2.9 34 70-105 5-38 (94)
176 2p3w_A Probable serine proteas 98.1 3E-06 1E-10 54.3 4.7 35 70-105 35-69 (112)
177 2l97_A HTRA, putative serine p 98.0 6.7E-06 2.3E-10 54.7 5.0 34 70-105 57-90 (134)
178 3k50_A Putative S41 protease; 98.0 9.3E-06 3.2E-10 63.4 6.1 52 53-106 74-125 (403)
179 2zpm_A Regulator of sigma E pr 98.0 3.3E-06 1.1E-10 52.0 2.4 34 71-105 5-38 (91)
180 1fc6_A Photosystem II D1 prote 98.0 1.6E-05 5.3E-10 61.2 6.7 50 53-106 85-134 (388)
181 3id1_A Regulator of sigma E pr 97.9 8.7E-06 3E-10 51.1 4.0 32 73-105 5-36 (95)
182 2i6v_A General secretion pathw 97.9 5.9E-06 2E-10 50.9 3.1 34 71-105 20-53 (87)
183 3rle_A Golgi reassembly-stacki 97.9 1.2E-05 4E-10 57.0 4.8 64 40-105 79-146 (209)
184 1y8t_A Hypothetical protein RV 97.8 4E-05 1.4E-09 57.4 6.7 36 69-105 241-276 (324)
185 2i4s_A General secretion pathw 97.8 1.9E-05 6.4E-10 50.3 3.8 35 71-106 38-72 (105)
186 2hga_A Conserved protein MTH13 97.8 3.6E-05 1.2E-09 50.9 5.3 34 70-105 25-58 (125)
187 4fgm_A Aminopeptidase N family 97.7 3.8E-05 1.3E-09 62.5 5.4 45 53-104 485-529 (597)
188 1te0_A Protease DEGS; two doma 97.7 4.7E-05 1.6E-09 57.0 5.0 35 70-105 244-278 (318)
189 4a8c_A Periplasmic PH-dependen 97.7 5.9E-05 2E-09 59.0 5.6 36 70-106 363-398 (436)
190 3stj_A Protease DEGQ; serine p 97.6 4.2E-05 1.4E-09 58.2 4.1 35 70-105 263-297 (345)
191 4a8c_A Periplasmic PH-dependen 97.6 5.8E-05 2E-09 59.0 4.7 35 70-105 263-297 (436)
192 1lcy_A HTRA2 serine protease; 97.6 8.1E-05 2.8E-09 55.9 5.2 35 70-105 256-290 (325)
193 3pv2_A DEGQ; trypsin fold, PDZ 97.6 7.4E-05 2.5E-09 58.8 4.7 35 70-105 282-316 (451)
194 3pv2_A DEGQ; trypsin fold, PDZ 97.5 6.5E-05 2.2E-09 59.1 4.0 35 70-105 386-420 (451)
195 3qo6_A Protease DO-like 1, chl 97.5 0.00011 3.6E-09 55.8 4.9 36 70-106 251-297 (348)
196 3num_A Serine protease HTRA1; 97.2 4.6E-05 1.6E-09 57.3 0.0 36 70-106 254-289 (332)
197 1ky9_A Protease DO, DEGP, HTRA 97.0 0.00016 5.3E-09 56.9 1.2 36 70-106 286-321 (448)
198 1k32_A Tricorn protease; prote 96.9 0.0014 4.9E-08 54.9 6.4 47 53-106 737-792 (1045)
199 1ky9_A Protease DO, DEGP, HTRA 96.8 0.00019 6.6E-09 56.4 0.0 36 70-106 383-418 (448)
200 4fln_A Protease DO-like 2, chl 96.6 0.0027 9.1E-08 51.3 5.4 34 70-105 277-310 (539)
201 4fln_A Protease DO-like 2, chl 95.4 0.014 4.9E-07 47.1 4.4 38 68-106 413-450 (539)
202 3dor_A Protein CT_858, CPAF; m 65.1 6.7 0.00023 32.0 4.1 29 71-104 97-125 (583)
203 1vc3_B L-aspartate-alpha-decar 44.8 8.8 0.0003 24.1 1.3 19 78-98 46-64 (96)
204 1uhe_A Aspartate 1-decarboxyla 42.3 8.7 0.0003 24.1 1.0 20 77-98 43-62 (97)
205 2adz_A Alpha-1-syntrophin; pro 40.5 5.1 0.00018 27.8 -0.3 26 78-108 57-82 (178)
206 1pqh_A Aspartate 1-decarboxyla 37.1 25 0.00086 23.5 2.7 20 77-98 86-105 (143)
207 2j3t_D Trafficking protein par 36.3 26 0.00089 25.0 2.9 22 83-105 52-73 (219)
208 3plx_B Aspartate 1-decarboxyla 36.2 16 0.00053 23.2 1.5 20 77-98 44-63 (102)
209 3oug_A Aspartate 1-decarboxyla 30.7 21 0.00073 23.0 1.5 19 78-98 73-91 (114)
210 2c45_A Aspartate 1-decarboxyla 27.0 28 0.00094 23.2 1.6 19 78-98 70-88 (139)
211 3pjy_A Hypothetical signal pep 24.7 42 0.0015 21.9 2.2 24 71-96 102-125 (136)
212 1a62_A RHO; transcription term 22.7 1.1E+02 0.0037 19.7 3.8 39 53-96 60-98 (130)
213 3m7a_A Uncharacterized protein 21.5 53 0.0018 21.6 2.2 23 72-96 117-139 (140)
No 1
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=99.64 E-value=2.3e-16 Score=110.73 Aligned_cols=100 Identities=22% Similarity=0.362 Sum_probs=75.1
Q ss_pred eeeccCcchhhhcccccccccccceEEeecCCCCCcceEEEEEEEeCCCCCcccEEEec---CcCCCCCcccEEEEEeCC
Q psy4600 3 TFAFQEENEDQEQEEDEDEEEESQFCTLRRAGKSASFTITTVSFTKGPGFKGLGFSIVG---GKDSPKGIMGIYVKTIFP 79 (108)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~V~L~K~~~~~glGfsi~G---G~~~~~~~~gi~I~~v~p 79 (108)
+.++..+++++...+.+.-.....+...++ +.....++|+|.|+. .+|||+|.+ |........+|||..|.+
T Consensus 46 ~~~~s~~~y~~~~~~ldp~~~~~~~~~e~~---~~~~~~~~v~l~k~~--~glG~~i~g~~~g~~~~~~~~gi~V~~V~~ 120 (170)
T 3egg_C 46 FSTYSNEDYDRRNEDVDPMAASAEYELEKR---VERLELFPVELEKDS--EGLGISIIGMGAGADMGLEKLGIFVKTVTE 120 (170)
T ss_dssp EEECCTTTSCCCCTTCCHHHHHHHHHHHHH---HTTSEEEEEEEECBT--TBSSEEEEEECSSSSCCSSSBEEEEEEECT
T ss_pred cccCChhHhcccccCCCcccchhhcccccc---cCCceEEEEEEEeCC--CeEeEEEEecccCCccccCCCCEEEEEECC
Confidence 455667777776655544433333222233 455678899999987 799999999 444333567999999999
Q ss_pred CChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 80 TGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 80 gg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+|+|+++|+|++||+|++|||+++.+++
T Consensus 121 gspA~~aG~L~~GD~Il~VNG~~v~~~~ 148 (170)
T 3egg_C 121 GGAAHRDGRIQVNDLLVEVDGTSLVGVT 148 (170)
T ss_dssp TSHHHHHCCCCTTCEEEEETTEECTTBC
T ss_pred CChHHHCCCCCCCCEEEEECCEECCCCC
Confidence 9999999999999999999999998764
No 2
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.63 E-value=8.8e-16 Score=102.83 Aligned_cols=71 Identities=24% Similarity=0.362 Sum_probs=62.5
Q ss_pred CCCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 35 KSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 35 ~~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+.....++|+|.|.. .+|||+|+||.+.+.+..++||..|.++++|++.|.|++||+|++|||+++.+++
T Consensus 24 ~~~~~~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~ 94 (130)
T 1i16_A 24 STAEATVCTVTLEKMS--AGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLT 94 (130)
T ss_dssp CSSSEEEEEEEEETTS--SSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSC
T ss_pred CCCCCcEEEEEEEcCC--CccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 3556788899999986 7999999999886655668999999999999999779999999999999998764
No 3
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=100.51 Aligned_cols=67 Identities=25% Similarity=0.411 Sum_probs=59.4
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
...+|.|.|+++ .+|||+|.||.+......++||..|.++|+|++.|+|++||+|++|||+++.+++
T Consensus 24 ~~~~v~l~k~~~-~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~ 90 (118)
T 3b76_A 24 HEKVVNIQKDPG-ESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVS 90 (118)
T ss_dssp EEEEEEEECCTT-CCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSC
T ss_pred CcEEEEEEeCCC-CccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC
Confidence 456788888865 7999999999876556679999999999999999999999999999999998765
No 4
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=99.61 E-value=3.3e-15 Score=96.32 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=54.9
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+.++|.|.|.. .+|||+|.++ +. ..+||++|.++|+|+++|+|++||+|++|||+++.+++
T Consensus 4 g~~k~V~l~K~~--~~LG~tI~~~-g~----g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~ 65 (95)
T 3gge_A 4 GIEKEVNVYKSE--DSLGLTITDN-GV----GYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWR 65 (95)
T ss_dssp EEEEEEEEECCS--SCCCEEEECS-SS----SCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCC
T ss_pred CeEEEEEEEECC--CCceEEEEcC-CC----CcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCC
Confidence 467899999987 8999999964 11 25899999999999999999999999999999999876
No 5
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=99.60 E-value=4.2e-15 Score=95.68 Aligned_cols=66 Identities=36% Similarity=0.569 Sum_probs=58.0
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCC--CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~--~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
+++++|+|.|++ .+|||++.||.+.+. ++.+++|..|.++|+|++.|+|++||+|++|||+++.++
T Consensus 2 e~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~ 69 (105)
T 2awx_A 2 EKIMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEV 69 (105)
T ss_dssp -CEEEEEEECBT--TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTC
T ss_pred CeEEEEEEEECC--CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCC
Confidence 467899999987 799999999987642 456899999999999999999999999999999999765
No 6
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=99.60 E-value=1e-15 Score=101.38 Aligned_cols=70 Identities=34% Similarity=0.511 Sum_probs=55.7
Q ss_pred CcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 37 ASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 37 ~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
....+++|.|.|+++ .+|||+|.||.+.+....++||..|.++|+|++.|.|++||+|++|||+++.+++
T Consensus 21 ~~~~~~~v~l~k~~~-~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~ 90 (120)
T 2iwo_A 21 QSMGLRTVEMKKGPT-DSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMT 90 (120)
T ss_dssp ----CEEEEEEC-----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCB
T ss_pred CCCCcEEEEEEcCCC-CCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCC
Confidence 344678899999874 6999999999876555668999999999999999779999999999999998753
No 7
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.59 E-value=7.6e-15 Score=94.76 Aligned_cols=70 Identities=29% Similarity=0.475 Sum_probs=60.7
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEec---CcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVG---GKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~G---G~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+.....++|.|.|.. .+|||++.+ |.+.+....++||..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 5 ~~~~~~~~v~l~k~~--~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~ 77 (107)
T 1wf8_A 5 SSGLELFPVELEKDE--DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVT 77 (107)
T ss_dssp CCCEEEEEEEEECBT--TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCC
T ss_pred cCCceEEEEEEEECC--CcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 455678889999886 799999999 5555545679999999999999999999999999999999998754
No 8
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=99.59 E-value=2e-15 Score=99.60 Aligned_cols=67 Identities=39% Similarity=0.673 Sum_probs=59.6
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..+++|+|.|++ .+|||++.+|.+.+.+..++||..|.++|||++.|+|++||+|++|||+++.+++
T Consensus 24 ~~~~~v~L~k~~--~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~ 90 (117)
T 2fne_A 24 PQCKSITLERGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVT 90 (117)
T ss_dssp CEEEEEEECCBT--TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC
T ss_pred CccEEEEEEeCC--CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence 367889999987 7999999999876655679999999999999999999999999999999998654
No 9
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=99.59 E-value=8e-15 Score=92.19 Aligned_cols=66 Identities=36% Similarity=0.580 Sum_probs=58.3
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCC--CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~--~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.++++|+|.|.+ .+|||++.||.+.+. ...+++|..|.+++||++.|+|++||+|++|||+++.++
T Consensus 2 ~~~~~v~l~k~~--~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~ 69 (94)
T 2fe5_A 2 MTIMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDV 69 (94)
T ss_dssp CCEEEEEEECCT--TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTC
T ss_pred cEEEEEEEEECC--CCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCC
Confidence 467889999986 799999999987642 456899999999999999999999999999999998765
No 10
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=99.58 E-value=1.3e-14 Score=91.72 Aligned_cols=67 Identities=27% Similarity=0.439 Sum_probs=59.2
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..+++|.|.|.. .+|||++.+|.+......+++|..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 4 g~~~~v~l~k~~--~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~ 70 (96)
T 1d5g_A 4 GDIFEVELAKND--NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGAT 70 (96)
T ss_dssp TCEEEEEEECSS--SSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCC
T ss_pred CCEEEEEEEeCC--CCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence 467889999986 7999999999876555569999999999999999999999999999999998653
No 11
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.57 E-value=1.5e-14 Score=93.68 Aligned_cols=70 Identities=27% Similarity=0.453 Sum_probs=61.3
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
......++|+|.|++ .+|||++.+|.+.+....++||..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 4 ~~~~~~~~v~l~~~~--~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~ 73 (110)
T 1um1_A 4 GSSGYVFTVELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLG 73 (110)
T ss_dssp CSCCCEEEEEEECCT--TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCC
T ss_pred CCCCcEEEEEEEECC--CccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence 345578899999987 7999999999877655679999999999999999999999999999999987643
No 12
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=99.57 E-value=1.4e-14 Score=92.50 Aligned_cols=67 Identities=36% Similarity=0.589 Sum_probs=58.5
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCC--CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~--~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+.++|.|.|.. .+|||++.+|.+.+. ...++||..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 3 ~~~~~v~l~k~~--~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~ 71 (102)
T 2i1n_A 3 FKYEEIVLERGN--SGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVV 71 (102)
T ss_dssp EEEEEEEEECBT--TBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCC
T ss_pred ceEEEEEEEECC--CcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC
Confidence 467889999976 799999999987643 3569999999999999999999999999999999997754
No 13
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.56 E-value=1.3e-14 Score=94.44 Aligned_cols=67 Identities=27% Similarity=0.446 Sum_probs=57.4
Q ss_pred CcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 37 ASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 37 ~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.....+.|+|.|. .+|||+|.||.+.... .++||..|.++++|+++|+|++||+|++|||+++.+++
T Consensus 12 ~~~~~~~v~l~k~---~glG~~i~gg~~~~~~-~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~ 78 (109)
T 1wi4_A 12 RDPAFRVITVTKE---TGLGLKILGGINRNEG-PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVS 78 (109)
T ss_dssp CCTTEEEEEECCS---SCCCEEEEECSSSSSC-SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCC
T ss_pred CCCcEEEEEEeCC---CccCEEEEeccCCCCC-CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCC
Confidence 3446788888885 5999999999876433 37999999999999999999999999999999998764
No 14
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=99.56 E-value=2.4e-14 Score=91.31 Aligned_cols=68 Identities=37% Similarity=0.516 Sum_probs=59.6
Q ss_pred CcceEEEEEEEeCCCCCcccEEEecCcCCCC--CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 37 ASFTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 37 ~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~--~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
+....++|+|.|.+ .+|||++.+|.+.+. ...+++|..|.++++|++.|+|++||+|++|||+++.++
T Consensus 4 ~~~~~~~v~l~~~~--~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~ 73 (101)
T 2jik_A 4 YLVTEEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNL 73 (101)
T ss_dssp GGEEEEEEEEECCT--TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSC
T ss_pred CCCccEEEEEEeCC--CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCC
Confidence 44578889999987 799999999987642 346899999999999999999999999999999999775
No 15
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=99.56 E-value=1.4e-14 Score=93.20 Aligned_cols=68 Identities=29% Similarity=0.413 Sum_probs=57.7
Q ss_pred CcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 37 ASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 37 ~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.....++|+| |.. .+|||++.+|.+......++||..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 8 ~~~~~~~v~l-~~~--~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~ 75 (106)
T 3axa_A 8 KEPEIITVTL-KKQ--NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLS 75 (106)
T ss_dssp --CCEEEEEE-ECS--SSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCC
T ss_pred CCceEEEEEE-CCC--CccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 3456788888 765 7999999998776555679999999999999999999999999999999998654
No 16
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=99.56 E-value=8.2e-15 Score=97.43 Aligned_cols=68 Identities=26% Similarity=0.366 Sum_probs=60.1
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecc-cCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTS-EYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~-~~s 107 (108)
..+++|.|.|.+. .+|||+|+||.+......++||..|.++++|++.|+|++||+|++|||+++. +++
T Consensus 24 ~~~~~v~l~k~~~-~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~ 92 (128)
T 2db5_A 24 RQIEYIDIERPST-GGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNIS 92 (128)
T ss_dssp CEEEEEEEECCSS-SCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSC
T ss_pred CceEEEEEEECCC-CccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCC
Confidence 4678899999874 7999999999877656679999999999999999999999999999999996 654
No 17
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=94.31 Aligned_cols=66 Identities=26% Similarity=0.331 Sum_probs=57.5
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCC-CCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSP-KGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~-~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+++|.|.|.+ .+|||+|.+|.+.. ....++||..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 15 ~~~~v~l~k~~--~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~ 81 (108)
T 2d92_A 15 EVKIVELVKDC--KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTS 81 (108)
T ss_dssp SCEEEEEEECS--SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCC
T ss_pred ceEEEEEEECC--CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC
Confidence 56789999987 79999999987632 14568999999999999999999999999999999997754
No 18
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.56 E-value=2e-14 Score=94.66 Aligned_cols=66 Identities=36% Similarity=0.600 Sum_probs=58.1
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCC--CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~--~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..++|+|.|++ .+|||+|.||.+.+. .+.+++|..|.++|+|++.|+|++||+|++|||+++.+++
T Consensus 24 ~~~~v~l~k~~--~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~ 91 (117)
T 2byg_A 24 TVVEIKLFKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVT 91 (117)
T ss_dssp EEEEEEEECBT--TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC
T ss_pred ceEEEEEEeCC--CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 67788998886 799999999987642 4568999999999999999999999999999999998764
No 19
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.55 E-value=1.8e-14 Score=92.69 Aligned_cols=70 Identities=33% Similarity=0.468 Sum_probs=60.0
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCC---CCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSP---KGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~---~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+...+.++|+|.|.. .+|||+|.+|.+.+ .++.++||..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 3 ~~~~~~~~v~l~~~~--~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~ 75 (105)
T 1wha_A 3 SGSSGRHVACLARSE--RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEAR 75 (105)
T ss_dssp CCCCEEEEEEECCCT--TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCC
T ss_pred CCCCeeEEEEEEeCC--CccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 445678889999987 78999999998753 23568999999999999999999999999999999998753
No 20
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.55 E-value=2.5e-14 Score=92.32 Aligned_cols=69 Identities=26% Similarity=0.426 Sum_probs=60.8
Q ss_pred CcceEEEEEEEeCCCCCcccEEEe-----cCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 37 ASFTITTVSFTKGPGFKGLGFSIV-----GGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 37 ~~~~~~~V~L~K~~~~~glGfsi~-----GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.....++|+|.|.. .+|||++. ||.+......++||..|.++|+|++.|+|++||+|++|||+++.+++
T Consensus 6 ~~~~~~~v~l~k~~--~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~ 79 (108)
T 1q7x_A 6 KPGDIFEVELAKND--NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGAT 79 (108)
T ss_dssp CSSSEEEEEEESSS--CSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCT
T ss_pred CCCcEEEEEEEECC--CCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCC
Confidence 44578899999986 79999999 88877555669999999999999999999999999999999998654
No 21
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=99.54 E-value=8.1e-15 Score=95.17 Aligned_cols=67 Identities=28% Similarity=0.382 Sum_probs=57.7
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..+++|.|.|.+. .+|||++.++.+.. ...++||..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 4 ~~~~~v~l~k~~~-~~lG~~i~g~~~~~-~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~ 70 (108)
T 3cbz_A 4 MNIITVTLNMEKY-NFLGISIVGQSNER-GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMS 70 (108)
T ss_dssp CCEEEEEECHHHH-CCCCEEEEEECSST-TCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCC
T ss_pred ceEEEEEEEeCCC-CccCEEEEcCcCCC-CCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCC
Confidence 3678899998654 79999999986542 3469999999999999999999999999999999998864
No 22
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=99.54 E-value=3.9e-14 Score=88.46 Aligned_cols=63 Identities=24% Similarity=0.414 Sum_probs=55.3
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+.++|.|.|.+ .+|||++.+|.+.. .+++|..|.++|||++.|+|++||+|++|||+++.+.+
T Consensus 2 ~~~~v~l~~~~--~g~G~~~~~g~~~~---~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~ 64 (90)
T 2q9v_A 2 MEQDIFLWRKE--TGFGFRILGGNEPG---EPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKS 64 (90)
T ss_dssp EEEEEEEECBT--TBCCEEEEECSSTT---SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSC
T ss_pred CcEEEEEEECC--CccCEEEEccccCC---CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCC
Confidence 46789999987 79999999987643 37999999999999999999999999999999997654
No 23
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=99.54 E-value=4.6e-14 Score=89.07 Aligned_cols=65 Identities=22% Similarity=0.291 Sum_probs=55.6
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..+++|.|.|.....+|||++.++.+. .++||..|.++|||++.|+|++||+|++|||+++.+++
T Consensus 2 ~~~~~v~l~k~~~~~~lG~~~~~~~~~----~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~ 66 (95)
T 2vwr_A 2 MEILQVALHKRDSGEQLGIKLVRRTDE----PGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGT 66 (95)
T ss_dssp EEEEEEEEECSSTTCCCCEEEEECSSS----CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC
T ss_pred cEEEEEEEEECCCCCcccEEEEeccCC----CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCC
Confidence 467889999963226899999987653 38999999999999999999999999999999997653
No 24
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=99.53 E-value=4.6e-14 Score=88.46 Aligned_cols=64 Identities=31% Similarity=0.519 Sum_probs=55.5
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
...++|+|.|.++ .+|||++.++.+. .+++|..|.++|||++.|+|++||+|++|||+++.+++
T Consensus 3 ~~~~~v~l~k~~~-~~lG~~~~~~~~~----~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~ 66 (92)
T 2qg1_A 3 SDTLTIGLQKKPG-KGLGLSIVGKRND----TGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNAT 66 (92)
T ss_dssp -CEEEEEEECCTT-SCCSEEEECCSSS----CSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCC
T ss_pred ceEEEEEEEeCCC-CcccEEEEeccCC----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 3578899999765 7999999987542 48999999999999999999999999999999997753
No 25
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=99.53 E-value=2.3e-14 Score=93.21 Aligned_cols=67 Identities=27% Similarity=0.425 Sum_probs=57.6
Q ss_pred ceEEEEEEEeCCCCCcccEEEec---CcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVG---GKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~G---G~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
...++|.|.|.. .+|||++.+ |.+......++||..|.|+|+|++.|+|++||+|++|||+++.+++
T Consensus 3 ~~~~~v~l~k~~--~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~ 72 (113)
T 2g5m_B 3 MELFPVELEKDS--EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVT 72 (113)
T ss_dssp CEEEEEECCCCS--SCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCC
T ss_pred eEEEEEEEEeCC--CCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 357788998876 799999999 5554445679999999999999999999999999999999998754
No 26
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.52 E-value=4.7e-14 Score=92.60 Aligned_cols=71 Identities=34% Similarity=0.534 Sum_probs=59.3
Q ss_pred CcceEEEEEEEeCCC-----CCcccEEEecCcCCCC--CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 37 ASFTITTVSFTKGPG-----FKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 37 ~~~~~~~V~L~K~~~-----~~glGfsi~GG~~~~~--~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
......+|+|.|.+. ..+|||+|.|+.+.+. ...++||..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 9 ~~~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~ 86 (117)
T 1ujd_A 9 YIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKT 86 (117)
T ss_dssp CSSCEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCC
T ss_pred CCCceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCC
Confidence 445677888988761 1689999999987542 4568999999999999999999999999999999998754
No 27
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.52 E-value=7.6e-14 Score=90.01 Aligned_cols=70 Identities=29% Similarity=0.387 Sum_probs=59.0
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCC-----CCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSP-----KGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~-----~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
....+.++|.|.|.. .+|||+|+++.+.. ....++||..|.++++|++.|.|++||+|++|||+++.+++
T Consensus 4 ~~~~~~~~v~l~k~~--~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~ 78 (107)
T 1uhp_A 4 GSSGKSLTLVLHRDS--GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRAT 78 (107)
T ss_dssp CCSSEEEEEEECCSS--SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCC
T ss_pred CcCcEEEEEEEEeCC--CccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence 456688899999985 79999999987531 13468999999999999999669999999999999997653
No 28
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=99.52 E-value=2e-14 Score=93.96 Aligned_cols=69 Identities=29% Similarity=0.440 Sum_probs=59.0
Q ss_pred cceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecc-cCC
Q psy4600 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTS-EYS 107 (108)
Q Consensus 38 ~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~-~~s 107 (108)
...+++|.|.|.++ .+|||++.++........++||..|.++|+|++.|+|++||+|++|||+++. +++
T Consensus 18 ~~~~~~v~l~k~~~-~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~ 87 (117)
T 2o2t_A 18 GRHVEVFELLKPPS-GGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTIT 87 (117)
T ss_dssp TSCEEEEEEECCSS-SCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSC
T ss_pred CCeEEEEEEEECCC-CCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCC
Confidence 34788899999864 7999999998876555679999999999999999999999999999999997 553
No 29
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=7.4e-14 Score=91.83 Aligned_cols=68 Identities=37% Similarity=0.517 Sum_probs=59.3
Q ss_pred cceEEEEEEEeCCCCCcccEEEecCcCCCC--CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 38 ~~~~~~V~L~K~~~~~glGfsi~GG~~~~~--~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
....++|+|.|.+ .+|||+|.+|.+.+. ...++||..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 15 ~~~~~~v~l~r~~--~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~ 84 (120)
T 2eno_A 15 LVTEEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLL 84 (120)
T ss_dssp EEEEEEEEEECCS--SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCC
T ss_pred CCceEEEEEEECC--CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCC
Confidence 4567889999987 799999999887542 3568999999999999999999999999999999998764
No 30
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=99.52 E-value=6.9e-14 Score=88.44 Aligned_cols=67 Identities=19% Similarity=0.310 Sum_probs=56.6
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCC-CCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSP-KGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~-~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+.++|+|.|.. .+|||++.++.+.. ....+++|..|.+++||++.|+|++||+|++|||+++.+++
T Consensus 2 ~~~~~v~l~k~~--~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~ 69 (97)
T 2jil_A 2 MRTVEVTLHKEG--NTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTT 69 (97)
T ss_dssp EEEEEEEEECBT--TBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCC
T ss_pred ceEEEEEEEeCC--CccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC
Confidence 357789998875 79999999987643 23468999999999999999999999999999999998753
No 31
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.52 E-value=5.8e-14 Score=91.86 Aligned_cols=68 Identities=26% Similarity=0.377 Sum_probs=58.0
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCC------CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPK------GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~------~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..+++|.|.|.+. .+|||+|.||.+... ...++||..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 14 ~~~~~v~l~k~~~-~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~ 87 (117)
T 2ehr_A 14 GPPRIVEIFREPN-VSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNAS 87 (117)
T ss_dssp CCCEEEEECCCSS-SCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCC
T ss_pred CCCEEEEEEeCCC-CccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence 3567899999864 799999999986531 2458999999999999999999999999999999997754
No 32
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=99.51 E-value=6.8e-14 Score=93.82 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=57.8
Q ss_pred ceEEEEEEEeC---------CCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKG---------PGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~---------~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..+.++.|.|. .. .+|||+|+||.....+..++||..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 26 ~~i~~v~l~~~~~~~~i~k~~~-~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~ 102 (131)
T 1wfg_A 26 RLIGRILLNKRLKDGSVPRDSG-AMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGAT 102 (131)
T ss_dssp EEEEEEEEECSCTTSCCCSCSC-TTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCC
T ss_pred ceeeEEEEeccceeEEEecCCC-CCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence 34566667665 33 7899999999887666779999999999999999999999999999999998753
No 33
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=99.51 E-value=7.2e-14 Score=88.50 Aligned_cols=67 Identities=27% Similarity=0.301 Sum_probs=57.6
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCC---CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPK---GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~---~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
..+++|+|.|.+. .+|||+|.+|.+.+. ...+++|..|.+++||++.|+|++||+|++|||+++.++
T Consensus 4 e~~~~v~l~k~~~-~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~ 73 (98)
T 1ihj_A 4 ELIHMVTLDKTGK-KSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNS 73 (98)
T ss_dssp CEEEEEEEECTTS-SSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTC
T ss_pred ceEEEEEEEeCCC-CCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCC
Confidence 3567899999554 799999999886543 345899999999999999999999999999999999875
No 34
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=99.51 E-value=4.1e-14 Score=91.01 Aligned_cols=67 Identities=27% Similarity=0.358 Sum_probs=55.5
Q ss_pred CcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 37 ASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 37 ~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
....+.+|.|.|..+ .+|||++.+|.+.. .+++|..|.++|+|++.+.|++||+|++|||+++.+++
T Consensus 6 ~~~~~~~v~l~~~~~-~~lG~~l~~g~~~~---~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~ 72 (103)
T 2dc2_A 6 GVGPIRKVLLLKEDH-EGLGISITGGKEHG---VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 72 (103)
T ss_dssp ---CEEEEEEECCSS-SCCCEEEEEEGGGT---EEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSC
T ss_pred CCCCcEEEEEEeCCC-CccCEEEEeccCCC---CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCC
Confidence 344677899988765 79999999987642 48999999999999997569999999999999998764
No 35
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.51 E-value=8.8e-14 Score=92.02 Aligned_cols=68 Identities=24% Similarity=0.389 Sum_probs=59.5
Q ss_pred CCCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 35 KSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 35 ~~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+...+.++|+|.|.. .+|||++.+|.+. ..++||..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 14 ~~~~~~~~~v~l~~~~--~glG~~~~~g~~~---~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~ 81 (123)
T 1ueq_A 14 SQLKGTFLSTTLKKSN--MGFGFTIIGGDEP---DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHT 81 (123)
T ss_dssp TTCCSEEEEEEEECCT--TSCSEEEECCSSS---SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSC
T ss_pred ccCCCcEEEEEEEeCC--CceeEEEecccCC---CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC
Confidence 5677788999999986 7999999988653 347999999999999999999999999999999997653
No 36
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.50 E-value=3e-14 Score=92.00 Aligned_cols=64 Identities=27% Similarity=0.233 Sum_probs=54.1
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..+.|.|.|.. .+|||+|.||.+... ..+||..|.++++|+++|+|++||+|++|||+++.+++
T Consensus 6 ~~~~v~l~k~~--~glG~~i~gg~~~~~--~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~ 69 (103)
T 1ufx_A 6 SGTLVRVKKSA--ATLGIAIEGGANTRQ--PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKE 69 (103)
T ss_dssp SSEEEEEECCS--SSCCEEEECBTTSSC--SSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCB
T ss_pred ceEEEEEEcCC--CcCCeEEECCCCCCC--CcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCC
Confidence 45678887766 799999999987532 23599999999999999999999999999999998754
No 37
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.50 E-value=7.5e-14 Score=89.58 Aligned_cols=67 Identities=21% Similarity=0.399 Sum_probs=58.0
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+...+.++|.|.|.. .+|||++.+|.+. ..++||..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 5 ~~~~~~~~v~l~~~~--~g~G~~i~~g~~~---~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~ 71 (103)
T 1uep_A 5 SSGYKELDVHLRRME--SGFGFRILGGDEP---GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKT 71 (103)
T ss_dssp SSSEEEECCEEESSS--SSCCEEECCCCST---TSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSC
T ss_pred CCCceEEEEEEEeCC--CccCEEEeeecCC---CCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCC
Confidence 456678889999975 7999999998753 247999999999999999999999999999999997653
No 38
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.49 E-value=2e-13 Score=85.33 Aligned_cols=65 Identities=29% Similarity=0.513 Sum_probs=56.1
Q ss_pred CcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 37 ASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 37 ~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.....++|+|.|.++..+|||++.++... .+++|..|.++++|++.| |++||+|++|||+.+.++
T Consensus 3 ~~~~~~~v~l~k~~~~~~~G~~~~~~~~~----~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~ 67 (91)
T 1m5z_A 3 TPVELHKVTLYKDSGMEDFGFSVADGLLE----KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDF 67 (91)
T ss_dssp SCCEEEEEEEECCTTCSSSSEEEEECTTS----SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTC
T ss_pred CCcceEEEEEEECCCCCCccEEEEeccCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence 34578899999986435899999987643 489999999999999998 999999999999998775
No 39
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=99.49 E-value=1.1e-13 Score=88.42 Aligned_cols=66 Identities=27% Similarity=0.483 Sum_probs=56.8
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+....+++|.|.|.. .+|||++.++.+. .++||..|.|+++|++.|+|++||+|++|||+++.+.+
T Consensus 7 ~~~~~~~~v~l~k~~--~glG~~~~~~~~~----~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~ 72 (104)
T 3i4w_A 7 DIPREPRRIVIHRGS--TGLGFNIVGGEXG----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 72 (104)
T ss_dssp CCCSSCEEEEEECBT--TBTSEEEEECC-C----CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCC
T ss_pred CCCCccEEEEEEeCC--CccCEEEECCCCC----CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCC
Confidence 455677889999986 7999999988653 38999999999999999999999999999999987654
No 40
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.49 E-value=2.3e-14 Score=93.03 Aligned_cols=71 Identities=27% Similarity=0.409 Sum_probs=59.2
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCC------CCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSP------KGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~------~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
|+....++|.|.|.++ .+|||+|.+|.+.. ....++||..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 5 p~~~~~~~v~l~k~~~-~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~ 81 (111)
T 1uju_A 5 SSGPGLRELCIQKAPG-ERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLT 81 (111)
T ss_dssp CCSCSSSCEEEECCTT-CCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSC
T ss_pred CCCCccEEEEEEECCC-CccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 3444567788999875 79999999998532 23458999999999999999999999999999999998654
No 41
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=99.49 E-value=7.3e-14 Score=87.33 Aligned_cols=65 Identities=28% Similarity=0.319 Sum_probs=55.7
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..+++|+|.|... .+|||++.++.+.. .+++|..|.+++||++.|.|++||+|++|||+++.+++
T Consensus 3 ~~~~~v~l~k~~~-~~lG~~i~~~~~~~---~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~ 67 (90)
T 1qav_A 3 LQRRRVTVRKADA-GGLGISIKGGRENK---MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT 67 (90)
T ss_dssp SSCEEEEEECCTT-TCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCC
T ss_pred CccEEEEEEeCCC-CCcCEEEEcccCCC---CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCC
Confidence 3567899999754 79999999987642 48999999999999999669999999999999998753
No 42
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=99.48 E-value=7.9e-14 Score=86.56 Aligned_cols=64 Identities=28% Similarity=0.404 Sum_probs=54.5
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
++++|+|.|.+. .+|||++.+|.+.. .++||..|.|++||++.+.|++||+|++|||+++.+++
T Consensus 2 ~~~~v~l~~~~~-~~lG~~i~~~~~~~---~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~ 65 (87)
T 4e34_A 2 PIRKVLLLKEDH-EGLGISITGGKEHG---VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 65 (87)
T ss_dssp CCEEEEEECCTT-BCCCEEEEEEGGGT---EEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCC
T ss_pred CEEEEEEEECCC-CcccEEEEccCCCC---CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCC
Confidence 456789999874 79999999987542 47999999999999996559999999999999997764
No 43
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=99.48 E-value=1.8e-13 Score=86.13 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=53.8
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..++.|+|.|.. .+|||++.++. ...++||..|.++|+|++.|+|++||+|++|||+++.+.+
T Consensus 3 ~~~r~v~l~k~~--~~lG~~i~~~~----~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~ 65 (93)
T 3o46_A 3 DSVKIIRLVKNR--EPLGATIKKDE----QTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKR 65 (93)
T ss_dssp -CCEEEEEEESS--SCCCEEEEECT----TTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSC
T ss_pred ccEEEEEEEeCC--CCccEEEEecC----CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 356789999985 79999999862 1248999999999999999999999999999999997654
No 44
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=99.48 E-value=1.4e-13 Score=86.26 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=52.6
Q ss_pred EEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 41 ~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
++.|+|.|.++ .+|||++.++. ..+++|..|.++++|++++.|++||+|++|||+++.+++
T Consensus 2 ~r~V~l~K~~~-~~lG~~i~~~~-----~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~ 62 (88)
T 1kwa_A 2 SRLVQFQKNTD-EPMGITLKMNE-----LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQT 62 (88)
T ss_dssp CEEEEEEECSS-SCCCEEEECSC-----GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSC
T ss_pred eEEEEEEeCCC-CceeEEEEeCC-----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 46789999975 79999999742 237999999999999997779999999999999998664
No 45
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.48 E-value=2.6e-14 Score=95.32 Aligned_cols=68 Identities=25% Similarity=0.345 Sum_probs=55.7
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCC-CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPK-GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~-~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
...++|.|.|... .+|||+|.++.+... .+.++||..|.++|||+++|+|++||+|++|||+++.+++
T Consensus 24 ~~~~~v~l~k~~~-~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~ 92 (127)
T 1wg6_A 24 QLTLEIPLNDSGS-AGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKS 92 (127)
T ss_dssp EEEEEEECSSSTT-TCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSC
T ss_pred ceEEEEEEeeCCC-CccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC
Confidence 3456677764433 799999999875421 2458999999999999999999999999999999998765
No 46
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.48 E-value=1.9e-13 Score=90.43 Aligned_cols=68 Identities=28% Similarity=0.391 Sum_probs=59.2
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+...+++|.|.|.. .+|||++.++.+.+ ..++||..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 21 ~~~~~~~~v~l~k~~--~glG~~l~~~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~ 88 (124)
T 2daz_A 21 DLPGELHIIELEKDK--NGLGLSLAGNKDRS--RMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRS 88 (124)
T ss_dssp TSSSEEEEEEEECCS--SCCCEEEECBSSTT--SCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSC
T ss_pred cCCCceEEEEEEeCC--CccCEEEeccCCCC--cCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 445678899999986 79999999987653 348999999999999999999999999999999997654
No 47
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=99.47 E-value=4.4e-13 Score=86.16 Aligned_cols=68 Identities=26% Similarity=0.546 Sum_probs=57.5
Q ss_pred CcceEEEEEEEeCCCCCcccEEEecCcCCCC---CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 37 ASFTITTVSFTKGPGFKGLGFSIVGGKDSPK---GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 37 ~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~---~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
...+.++|+|.|.++ .+|||++.++.+.+. ...+++|..|.++++|+ . .|++||+|++|||+++.+++
T Consensus 4 ~~~~~~~v~l~k~~~-~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-a-gl~~GD~I~~vng~~v~~~~ 74 (107)
T 2h2b_A 4 MIWEQHTVTLHRAPG-FGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-G-QLQENDRVAMVNGVSMDNVE 74 (107)
T ss_dssp CCEEEEEEEEECBTT-TBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-T-TBCTTCEEEEETTEECTTCC
T ss_pred ccceeEEEEEEeCCC-CccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-h-CCCCCCEEEEECCEECCCcc
Confidence 445788899999875 799999999887542 35699999999999999 5 59999999999999998753
No 48
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.47 E-value=1.9e-13 Score=85.50 Aligned_cols=61 Identities=25% Similarity=0.425 Sum_probs=53.6
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+++|+|.|.+ .+|||++.++.+. .+++|..|.+++||++.| |++||+|++|||+++.+++
T Consensus 3 ~~r~v~l~r~~--~g~G~~~~~~~~~----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~ 63 (91)
T 1g9o_A 3 LPRLCCLEKGP--NGYGFHLHGEKGK----LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKET 63 (91)
T ss_dssp CCEEEEEECBT--TBCCEEEEECTTC----SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCC
T ss_pred ccEEEEEEeCC--CcccEEEEecCCC----CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCC
Confidence 45678999987 6999999987653 389999999999999998 9999999999999998754
No 49
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.47 E-value=2e-13 Score=90.69 Aligned_cols=71 Identities=24% Similarity=0.451 Sum_probs=60.1
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCCC--CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~--~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+.....++|.|.|... .+|||++.++.+... ...++||..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 11 ~~~~~~~~v~l~~~~~-~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~ 83 (129)
T 2dmz_A 11 SSLFETYNVELVRKDG-QSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFA 83 (129)
T ss_dssp SCCEEEEEEEECCCTT-CCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCC
T ss_pred CCCCcEEEEEEEeCCC-CCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 4566788899977543 799999999876543 4468999999999999999999999999999999998754
No 50
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=89.00 Aligned_cols=55 Identities=36% Similarity=0.560 Sum_probs=49.8
Q ss_pred CcccEEEecCcCCCC--CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 53 KGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 53 ~glGfsi~GG~~~~~--~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+|||+|+||.+.+. .+.++||..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 13 ~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~ 69 (106)
T 4amh_A 13 KGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVT 69 (106)
T ss_dssp CCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCC
T ss_pred CccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC
Confidence 799999999998754 5568999999999999999999999999999999997754
No 51
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=99.47 E-value=2.6e-13 Score=83.88 Aligned_cols=60 Identities=22% Similarity=0.341 Sum_probs=52.6
Q ss_pred EEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 42 TTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 42 ~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
++|+|.|.+ .+|||++.+|... ..+++|..|.++++|++.|+|++||+|++|||+++.++
T Consensus 2 ~~v~l~k~~--~g~G~~i~~~~~~---~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~ 61 (85)
T 2i04_A 2 IHTKLRKSS--RGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGH 61 (85)
T ss_dssp EEEEEECBT--TBSSEEEEECCST---TBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTC
T ss_pred EEEEEEECC--CCCCEEEEcccCC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCC
Confidence 468888876 7999999987653 34799999999999999999999999999999999765
No 52
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=99.47 E-value=3.2e-13 Score=89.33 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=56.3
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
....+|+|.|.+. .+|||++.||.+.. .++||..|.++|+|++.|+|++||+|++|||+++.+++
T Consensus 18 ~~~~~v~l~k~~~-~~lG~~i~gg~~~~---~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~ 82 (125)
T 3hpk_A 18 TVPGKVTLQKDAQ-NLIGISIGGGAQYC---PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKT 82 (125)
T ss_dssp EEEEEEEEECCTT-SCCCEEEEECSSCC---SSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC
T ss_pred CCCeEEEEEeCCC-CCcCEEEeccCCCC---CCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCC
Confidence 3566788999875 78999999997642 48999999999999999999999999999999998654
No 53
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.47 E-value=3.4e-13 Score=86.83 Aligned_cols=71 Identities=24% Similarity=0.433 Sum_probs=57.9
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCCC--CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~--~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
+...+.++|.|.+.....+|||++.++.+.+. ...+++|..|.++++|++.|+|++||+|++|||+++.++
T Consensus 8 ~~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~ 80 (108)
T 2jre_A 8 ASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGM 80 (108)
T ss_dssp SSSCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTS
T ss_pred ccCcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCC
Confidence 34557888888632223799999999876543 445899999999999999999999999999999999875
No 54
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.47 E-value=2.7e-13 Score=94.18 Aligned_cols=68 Identities=32% Similarity=0.631 Sum_probs=59.5
Q ss_pred cceEEEEEEEeCCCCCcccEEEecCcCCCC--CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 38 ~~~~~~V~L~K~~~~~glGfsi~GG~~~~~--~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..+..+|+|.|+. .+|||+|.+|.+.+. +..++||..|.|+++|++.|+|+.||+|++|||+++.+++
T Consensus 3 ~~~~~~v~l~~~~--~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~ 72 (196)
T 3gsl_A 3 SMEYEEITLERGN--SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVT 72 (196)
T ss_dssp CEEEEEEEEECBT--TBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC
T ss_pred CcEEEEEEEEECC--CCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCC
Confidence 3467889999986 799999999988653 3568999999999999999999999999999999998754
No 55
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.46 E-value=1.8e-13 Score=89.73 Aligned_cols=67 Identities=28% Similarity=0.419 Sum_probs=57.2
Q ss_pred cceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 38 ~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
...++.|.|.|... .+|||+|.++.+.. ..+++|..|.+++||++.|+|++||+|++|||+++.+++
T Consensus 13 ~~~~~~v~l~~~~~-~~lG~~i~g~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~ 79 (119)
T 1x6d_A 13 LDGIHVTILHKEEG-AGLGFSLAGGADLE--NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTT 79 (119)
T ss_dssp CTTEEEEEEECCTT-SCCSEEEECCSSSS--CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCC
T ss_pred CCCeEEEEEEeCCC-CccCEEEeCCCCCC--CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence 44677888888754 89999999987642 348999999999999999999999999999999998654
No 56
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=99.46 E-value=5.1e-13 Score=84.51 Aligned_cols=64 Identities=31% Similarity=0.489 Sum_probs=55.8
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..++|+|.|+. .+|||++.++.+.+ ..+++|..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 4 ~~~~v~l~~~~--~~lG~~l~~~~~~~--~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~ 67 (98)
T 2opg_A 4 CETTIEISKGR--TGLGLSIVGGSDTL--LGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKAT 67 (98)
T ss_dssp EEEEEEEECBT--TBTCEEEEECTTST--TCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC
T ss_pred CEEEEEEEECC--CcccEEEecCCCCC--CCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCC
Confidence 56789999986 79999999987643 138999999999999999999999999999999997753
No 57
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=99.45 E-value=3e-13 Score=90.86 Aligned_cols=68 Identities=21% Similarity=0.188 Sum_probs=56.3
Q ss_pred cceEEEEEEEeCCCCCcccEEEecCcCCC---------CCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSP---------KGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 38 ~~~~~~V~L~K~~~~~glGfsi~GG~~~~---------~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..+.++|+|.|... .+|||+|.++.... ....++||..|.++++|++.| |+.||+|++|||+++.+++
T Consensus 25 ~~~~r~v~l~r~~~-~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~ 101 (132)
T 3l4f_D 25 IIKEKTVLLQKKDS-EGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVG 101 (132)
T ss_dssp CCCCCEEEEECCTT-SCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSC
T ss_pred CCCCEEEEEEECCC-CcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence 44567899998654 79999999997632 123479999999999999999 9999999999999998754
No 58
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.5e-13 Score=85.07 Aligned_cols=63 Identities=30% Similarity=0.529 Sum_probs=54.3
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..++|+|.|.. .+|||++.++.+.. .+++|..|.++++|++.|.|++||+|++|||+++.+++
T Consensus 5 ~~r~v~l~k~~--~glG~~l~~~~~~~---~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~ 67 (93)
T 2dkr_A 5 SSGVVELPKTD--EGLGFNIMGGKEQN---SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQ 67 (93)
T ss_dssp CSCEEEEECCT--TCCCEEEECSSSSS---CCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSC
T ss_pred CCEEEEEEeCC--CCccEEEecccCCC---CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 45678898876 79999999886542 48999999999999999779999999999999998653
No 59
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.45 E-value=4.2e-13 Score=87.44 Aligned_cols=63 Identities=30% Similarity=0.517 Sum_probs=55.3
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
...++|+|.|+. .+|||++.++.+. ..+++|..|.++++|++.|+|++||+|++|||+++.++
T Consensus 23 ~~~~~v~l~~~~--~glG~~l~~~~~~---~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~ 85 (112)
T 2r4h_A 23 MDFYTVELERGA--KGFGFSLRGGREY---NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNM 85 (112)
T ss_dssp CCEEEEEEECBT--TBTSEEEEECGGG---TCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTC
T ss_pred CceEEEEEEcCC--CccCEEEeccccC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCC
Confidence 467889999876 6999999998653 24899999999999999999999999999999999765
No 60
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=99.45 E-value=2.1e-13 Score=85.41 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=49.5
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+++|+|.|++. .+|||++.+| +|..+.+++||++.| |++||+|++|||+++.+++
T Consensus 4 ~~r~v~l~k~~~-g~~Gf~i~~g----------~I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~ 59 (82)
T 1r6j_A 4 DPRTITMHKDST-GHVGFIFKNG----------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLK 59 (82)
T ss_dssp CCEEEEEECCTT-SCCCEEEETT----------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCC
T ss_pred ceEEEEEEECCC-CCeEEEEECC----------EEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Confidence 457799999874 5799999865 489999999999999 9999999999999998876
No 61
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.45 E-value=6.8e-13 Score=85.79 Aligned_cols=69 Identities=30% Similarity=0.417 Sum_probs=58.4
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
+.....+.+.|.+.. .+|||++.++.+...+..+++|..|.++++|++.|+|++||+|++|||+++.+.
T Consensus 7 ~~~~~~~~~~l~~~~--~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~ 75 (111)
T 2koj_A 7 KKVGKRLNIQLKKGT--EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGK 75 (111)
T ss_dssp SSSCEEEEEEEECBT--TBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTS
T ss_pred cccCcEEEEEEEECC--CccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCC
Confidence 344577888888876 799999998765543456899999999999999999999999999999999765
No 62
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=99.44 E-value=4.5e-13 Score=89.35 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=58.9
Q ss_pred CCCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 35 KSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 35 ~~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.......++|+|.|+. .+|||++.|+... ..+++|..|.++|+|++.|+|++||+|++|||+++.+++
T Consensus 13 ~~~~g~~~~v~l~~~~--~g~G~~i~g~~~~---~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~ 80 (129)
T 2kpk_A 13 SELKGKFIHTKLRKSS--RGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHT 80 (129)
T ss_dssp TTSCSEEEEEEEEECS--SCCSEEEEEEEET---TEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSC
T ss_pred hhcCCcEEEEEEEECC--CcccEEEeCccCC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence 4556788899999986 7999999987653 347999999999999999999999999999999998653
No 63
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.43 E-value=3.6e-13 Score=88.16 Aligned_cols=66 Identities=27% Similarity=0.551 Sum_probs=55.9
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCC---CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPK---GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~---~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
...++|.|.|.+. .+|||+|.||.+++. +..++||..|.++++|+ +.|++||+|++|||+++.+++
T Consensus 13 ~~~~~v~l~k~~~-~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~--~gL~~GD~I~~Vng~~v~~~~ 81 (117)
T 2csj_A 13 WEQYTVTLQKDSK-RGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVL 81 (117)
T ss_dssp EEEEEEEEECCSS-STTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH--HHBCTTCEEEEESSCBCBTCC
T ss_pred ceEEEEEEEECCC-CccCEEEeCCcCCccccCCCCCEEEEEECCCCccc--ccCCCCCEEEEECCEECCCcC
Confidence 4567889999864 799999999987643 45689999999999996 569999999999999998753
No 64
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.43 E-value=9e-13 Score=83.11 Aligned_cols=65 Identities=26% Similarity=0.388 Sum_probs=55.7
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCC---CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPK---GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~---~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+.+++.+.+.. .+|||++.+|.+.+. ...+++|..|.+++||++.| |++||+|++|||+++.+++
T Consensus 3 ~~~~v~~~~~~--~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~ 70 (97)
T 2w4f_A 3 EELTLTILRQT--GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAE 70 (97)
T ss_dssp CEEEEEEECBT--TBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCC
T ss_pred eEEEEEEEeCC--CceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcC
Confidence 45678888875 799999999887532 35689999999999999998 9999999999999987753
No 65
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=4.3e-13 Score=85.84 Aligned_cols=68 Identities=22% Similarity=0.316 Sum_probs=58.2
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
+.....++|.|.|.. .+|||++.++.+.+ ...+++|..|.++++|++.|+|++||+|++|||+++.++
T Consensus 7 ~~~~~~~~v~l~~~~--~g~G~~l~~~~~~~-~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~ 74 (104)
T 2djt_A 7 GQASGHFSVELVRGY--AGFGLTLGGGRDVA-GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGL 74 (104)
T ss_dssp CSCCCCEEEEEECCS--SSCCEEEECCEETT-EECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTC
T ss_pred CCCCceEEEEEEeCC--CCccEEEEeccCCC-CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCC
Confidence 445577889999987 79999999987542 235899999999999999999999999999999999775
No 66
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=99.42 E-value=3.6e-13 Score=86.57 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=56.1
Q ss_pred cceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccC-CCCCCCeEEEECCeecccCC
Q psy4600 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG-SLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 38 ~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G-~L~~GD~il~VNG~~l~~~s 107 (108)
...++.+.|.|... .+|||++.+|.+.. .++||..|.++++|++.| +|++||+|++|||+++.+++
T Consensus 15 ~~~~~~v~l~~~~~-~~~G~~~~gg~~~~---~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~ 81 (107)
T 3nfk_A 15 HDNLVLIRMKPDEN-GRFGFNVKGGYDQK---MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT 81 (107)
T ss_dssp -CCCEEEEECCCTT-SCCCEEEEEEGGGT---EEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCC
T ss_pred CCCEEEEEEEcCCC-CCCCEEEEccCCCC---CCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCC
Confidence 34577889988864 79999999987642 479999999999999999 69999999999999998754
No 67
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.42 E-value=3.4e-13 Score=88.42 Aligned_cols=67 Identities=19% Similarity=0.264 Sum_probs=56.6
Q ss_pred CcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhccc-CCCCCCCeEEEECCeecccCC
Q psy4600 37 ASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADT-GSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 37 ~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~-G~L~~GD~il~VNG~~l~~~s 107 (108)
+....++|+|.|... .+|||++.+|.+. ..++||..|.++++|++. |.|++||+|++|||+++.+++
T Consensus 12 ~~~~~~~v~l~k~~~-~~~G~~l~gg~~~---~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~ 79 (119)
T 2cs5_A 12 PHDNLVLIRMKPDEN-GRFGFNVKGGYDQ---KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT 79 (119)
T ss_dssp CSSCCEEEEECCCSS-SCCSEEEEEEGGG---TEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSC
T ss_pred CCCCeEEEEEEeCCC-CCcCEEEecccCC---CCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCC
Confidence 445678899999864 5799999998764 247999999999999998 569999999999999997753
No 68
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=99.42 E-value=7.3e-13 Score=85.06 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=53.6
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.-++.|.|.|.++ .+|||++....+ .+++|..|.+++||++.|+|++||+|++|||+++.+++
T Consensus 11 ~~~~~v~l~K~~~-~~lG~~l~~~~~-----~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~ 73 (97)
T 2ejy_A 11 HMVRLIQFEKVTE-EPMGICLKLNEK-----QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHS 73 (97)
T ss_dssp --CEEEEEEECSS-SCCSEEEEECTT-----CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSC
T ss_pred CccEEEEEEeCCC-CCeeEEEEeCCC-----CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 3467899999876 899999986432 38999999999999999999999999999999998754
No 69
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=99.42 E-value=1.4e-12 Score=82.11 Aligned_cols=62 Identities=31% Similarity=0.411 Sum_probs=51.3
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCC---CC--CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDS---PK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~---~~--~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
..++|+|.|++ +|||+|.||.+. +. ...+++|..|.++++|++ | |++||+|++|||+++.++
T Consensus 3 ~~~~v~l~~~~---~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~ 69 (95)
T 1mfg_A 3 MEIRVRVEKDP---ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINI 69 (95)
T ss_dssp EEEEEEEECSS---SCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTC
T ss_pred eEEEEEECCCC---CCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCC
Confidence 34667787764 899999998752 22 345899999999999999 5 999999999999998765
No 70
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.41 E-value=9.2e-13 Score=82.25 Aligned_cols=60 Identities=25% Similarity=0.443 Sum_probs=53.2
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
..++|+|.|++ .+|||++.++.+. .+++|..|.++++|++.| |++||+|++|||+++.++
T Consensus 4 ~~r~v~l~k~~--~g~G~~~~~~~~~----~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~ 63 (90)
T 2he4_A 4 RPRLCHLRKGP--QGYGFNLHSDKSR----PGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGL 63 (90)
T ss_dssp CCEEEEEECBT--TBCCEEEEECSSS----SSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTS
T ss_pred CcEEEEEEECC--CCccEEEEccCCC----CCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCC
Confidence 56778999987 7999999987652 389999999999999998 999999999999999875
No 71
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.41 E-value=1.2e-12 Score=82.86 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=54.0
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
...++|.|.|.. .+|||++.++.+. ..+++|..|.++++|++.|+|++||+|++|||+++.++
T Consensus 4 ~~~~~v~l~~~~--~~lG~~i~~~~~~---~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~ 66 (97)
T 1n7e_A 4 AIIYTVELKRYG--GPLGITISGTEEP---FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGK 66 (97)
T ss_dssp CCEEEEEEECTT--SCCCEEEECCSST---TSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTC
T ss_pred ceEEEEEEEeCC--CCcCEEEEcccCC---CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCC
Confidence 467889997765 6899999987542 23899999999999999999999999999999999765
No 72
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.41 E-value=1.5e-12 Score=84.75 Aligned_cols=70 Identities=20% Similarity=0.288 Sum_probs=56.6
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCCC-Cc---ccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPK-GI---MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~-~~---~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
+.....++|.|.|... .+|||+|.++.+... +. .+++|..|.++++|+++..|++||+|++|||+++.++
T Consensus 6 ~~~~~~~~v~l~~~~~-~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~ 79 (114)
T 1uew_A 6 SGSLQTSDVVIHRKEN-EGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINM 79 (114)
T ss_dssp SCCCCCEEEEEECCTT-SCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTS
T ss_pred CCcccceEEEEEECCC-CCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCC
Confidence 4455678899998754 799999999876532 22 2679999999999999445999999999999998775
No 73
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=99.41 E-value=5.4e-13 Score=86.54 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=52.8
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..++|.|.|... .+|||++.+. ..+++|..|.++|+|++.|+|++||+|++|||+++.+++
T Consensus 2 ~~~~v~L~k~~~-~glG~~i~~~------~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~ 62 (106)
T 2la8_A 2 EKFNVDLMKKAG-KELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP 62 (106)
T ss_dssp EEEEEEECCBSS-STTCCEEEEC------SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSC
T ss_pred eEEEEEEEeCCC-CccCEEEEeC------CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC
Confidence 567899987664 7999999872 248999999999999999999999999999999998753
No 74
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=99.41 E-value=1.2e-12 Score=82.84 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=53.4
Q ss_pred ceEEEEEEEeCCCCCcccEEEec-CcCC---CCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVG-GKDS---PKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~G-G~~~---~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
...++|+|.|.+. .+|||+|.+ |... .....+++|..|.++++|++.| |++||+|++|||+++.++
T Consensus 3 ~~~r~v~l~k~~~-~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~ 72 (96)
T 2ego_A 3 QQRKVLTLEKGDN-QTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGI 72 (96)
T ss_dssp CCEEEEEEECCTT-CCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTC
T ss_pred CccEEEEEEeCCC-CCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCC
Confidence 3567899999874 699999997 2211 1123589999999999999998 999999999999999875
No 75
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.41 E-value=6.8e-13 Score=87.12 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=56.7
Q ss_pred cceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 38 ~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
...++.|.|.|..+ .+|||++.++.+.. ..++||..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 13 ~~~~~~v~l~k~~~-~~lG~~i~~~~~~~--~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~ 79 (117)
T 1v62_A 13 ASGPLMVEIVKTPG-SALGISLTTTSLRN--KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCS 79 (117)
T ss_dssp SSSSEEEEEECCTT-CCCCCEEEEECCSS--SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCC
T ss_pred CCCcEEEEEEcCCC-CcccEEEEccCCCC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 44678899999875 79999999886532 235999999999999999999999999999999997654
No 76
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.40 E-value=9.3e-13 Score=81.81 Aligned_cols=60 Identities=25% Similarity=0.369 Sum_probs=51.9
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
..++|+| +++ .+|||++.+|.+.. .+++|..|.+++||++.| |++||+|++|||+++.++
T Consensus 3 ~~~~v~l-~~~--~~~G~~l~~g~~~~---~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~ 62 (88)
T 2uzc_A 3 SNYSVSL-VGP--APWGFRLQGGKDFN---MPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGM 62 (88)
T ss_dssp CEEEEEE-ESS--SCCCEEEEEEGGGT---EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTC
T ss_pred cEEEEEE-cCC--CcccEEEECcCCCC---CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCC
Confidence 4667888 554 69999999987642 489999999999999998 999999999999998875
No 77
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.39 E-value=3e-12 Score=82.68 Aligned_cols=68 Identities=25% Similarity=0.349 Sum_probs=57.7
Q ss_pred CcceEEEEEEEeCCCCCcccEEEecCcCCCC---CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 37 ASFTITTVSFTKGPGFKGLGFSIVGGKDSPK---GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 37 ~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~---~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
...+.+++.|.+.. .+|||++.+|.+... ...+++|..|.+++||++.| |++||+|++|||+.+.+++
T Consensus 12 ~~~~~~~~~l~~~~--~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~ 82 (110)
T 1x5q_A 12 IEEEELTLTILRQT--GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAE 82 (110)
T ss_dssp CCCEEEEEEEECSS--SSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCC
T ss_pred CCcceEEEEEecCC--CeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcC
Confidence 44567788998885 799999999986531 34689999999999999998 9999999999999988753
No 78
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.39 E-value=1.7e-12 Score=84.01 Aligned_cols=62 Identities=31% Similarity=0.479 Sum_probs=54.2
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..++.|.|.|.. .+|||++.++.+ .++||..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 14 ~~~~~v~l~~~~--~~lG~~l~~~~~-----~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~ 75 (111)
T 2dlu_A 14 GHVEEVELINDG--SGLGFGIVGGKT-----SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMT 75 (111)
T ss_dssp SEEEEEEEECCS--SCCCEEEECCSS-----SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSC
T ss_pred CceEEEEEEeCC--CccCEEEeccCC-----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 356789999876 799999998754 37999999999999999999999999999999987653
No 79
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=99.39 E-value=8.7e-13 Score=83.67 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=54.6
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+.....+++.|.|... .+|||++.+. ..+++|..|.++|+|++.|+|++||+|++|||+++.+++
T Consensus 4 ~~~~~~~~v~l~~~~~-~glG~~~~~~------~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~ 68 (96)
T 2qkv_A 4 RNSLEKFNVDLMKKAG-KELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP 68 (96)
T ss_dssp CCCCCCEEEEEECBTT-BCCCEEEEEC------SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCC
T ss_pred hHHCceEEEEEEeCCC-CCccEEEEeC------CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCC
Confidence 3445678899987654 7999999862 238999999999999999999999999999999998753
No 80
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=99.39 E-value=1.3e-12 Score=85.58 Aligned_cols=65 Identities=29% Similarity=0.509 Sum_probs=56.1
Q ss_pred CcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 37 ASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 37 ~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
....+++|.|.|.. .+|||++.++.+. .+++|..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 11 ~~~~~~~v~l~k~~--~glG~~l~~~~~~----~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~ 75 (119)
T 1tp5_A 11 IPREPRRIVIHRGS--TGLGFNIVGGEDG----EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 75 (119)
T ss_dssp CCCSCEEEEEECTT--SCCCEEEEECGGG----CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCC
T ss_pred CCCccEEEEEEECC--CCccEEEecCCCC----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 34467889999987 6899999987642 38999999999999999999999999999999997653
No 81
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.38 E-value=3.5e-12 Score=84.23 Aligned_cols=68 Identities=31% Similarity=0.409 Sum_probs=57.7
Q ss_pred CcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 37 ASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 37 ~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
...+.+.+.|.+.. .+|||++.++.....+..+++|..|.++++|++.|+|++||+|++|||+++.++
T Consensus 27 ~~~~~~~v~l~~~~--~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~ 94 (121)
T 2kom_A 27 KIGKRLNIQLKKGT--EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGK 94 (121)
T ss_dssp CSCEEEEEEEECCT--TCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTS
T ss_pred cCCeEEEEEEEcCC--CcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCC
Confidence 34567788888876 799999998865543456899999999999999999999999999999999774
No 82
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.38 E-value=1.7e-12 Score=91.41 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=56.5
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.+.+.|+|.|+. .+|||+|.+|.+...+ .++||..|.++++|+++|+|+.||+|++|||+++.+
T Consensus 17 ~~~~~v~~~~~~--~~lG~~i~~g~~~~~~-~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~ 80 (206)
T 3r0h_A 17 NKKILIELKVEK--KPMGVIVCGGKNNHVT-TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHV 80 (206)
T ss_dssp TSCEEEEEECTT--SCCCEEEECCSSSSCC-SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCG
T ss_pred CCEEEEEEEeCC--CCcCEEEecccCCCCC-CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCC
Confidence 356778898875 7999999999887543 489999999999999999999999999999999987
No 83
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=99.38 E-value=3.5e-13 Score=100.39 Aligned_cols=68 Identities=26% Similarity=0.294 Sum_probs=58.7
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+....+++|+|.|..+ .+|||+|.||.+.. .++||..|.++|+|++++.|++||+|++|||+++.+++
T Consensus 73 ~~~~~~r~V~L~k~~~-~glGf~I~gg~d~~---~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t 140 (263)
T 1z87_A 73 ALLLQRRRVTVRKADA-GGLGISIKGGRENK---MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT 140 (263)
T ss_dssp TTSCSSEEECCCTTTT-CCCCCEEEEETTTT---EEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSC
T ss_pred cCCCccEEEEEEeCCC-CCEeEEEeeccCCC---CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcC
Confidence 4455688999999864 79999999998642 58999999999999997679999999999999998764
No 84
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=99.38 E-value=1.3e-12 Score=83.52 Aligned_cols=67 Identities=28% Similarity=0.369 Sum_probs=55.0
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCC---CC--CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDS---PK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~---~~--~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+.....++|.|.|++ +|||++.||.+. +. ...++||..|.++++|++ | |++||+|++|||+++.+++
T Consensus 7 ~~~~~~~~v~l~~~~---~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~ 78 (103)
T 1n7t_A 7 ELAKQEIRVRVEKDP---ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIE 78 (103)
T ss_dssp SSSCCCEEEEEECSS---CCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCC
T ss_pred CcccEEEEEEEccCC---CccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCC
Confidence 445566778898864 899999998752 22 456899999999999999 5 9999999999999997653
No 85
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.37 E-value=2.2e-12 Score=82.75 Aligned_cols=63 Identities=32% Similarity=0.589 Sum_probs=54.7
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..++|.|.|.++ .+|||++.++.+.. .+++|..|.++++|++.| |++||+|++|||+.+.+++
T Consensus 15 ~~~~v~l~k~~~-~~lG~~~~~~~~~~---~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~ 77 (104)
T 1wi2_A 15 LPRIVTLKKPPG-AQLGFNIRGGKASQ---LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIE 77 (104)
T ss_dssp CCEEEEECCCTT-CCCSEEEECCSSSC---CCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCC
T ss_pred CCEEEEEEeCCC-CCccEEEEcccCCC---CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence 457899999875 79999999886542 489999999999999998 9999999999999998743
No 86
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.37 E-value=1.7e-12 Score=81.85 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=53.5
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
..++|.|.|+. .+|||++.+..+.+ ...+++|..|.+++||++.| |++||+|++|||+++.++
T Consensus 3 ~~r~v~l~k~~--~~~G~~l~~~~~~~-~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~ 65 (96)
T 2v90_A 3 KPRCLHLEKGP--QGFGFLLREEKGLD-GRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGL 65 (96)
T ss_dssp CCEEEEEECBT--TBSCEEEEEEECTT-SCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTC
T ss_pred CCEEEEEEeCC--CcccEEEEeccCCC-CCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCC
Confidence 56789999987 69999999844322 33589999999999999998 999999999999999875
No 87
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=99.37 E-value=3.1e-12 Score=80.30 Aligned_cols=67 Identities=22% Similarity=0.328 Sum_probs=54.8
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCC-CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPK-GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~-~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+.++|.|.+.. .+|||++.++.+... ...+++|..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 3 ~~~~~v~l~~~~--~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~ 70 (97)
T 2iwn_A 3 SETFDVELTKNV--QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFT 70 (97)
T ss_dssp EEEEEEEEECBT--TBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSC
T ss_pred cEEEEEEEecCC--CCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCC
Confidence 356778887765 799999998765322 3458999999999999999999999999999999998653
No 88
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=99.36 E-value=3.1e-12 Score=82.14 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=53.4
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCC---------cccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKG---------IMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~---------~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
...++|.|.|.. .+|||++.++.+.... ...+||..|.++++|++.| |+.||+|++|||+++.+++
T Consensus 5 ~~~r~v~l~k~~--~g~G~~l~~~~~~~~~~~~~~~~~~~p~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~ 79 (107)
T 3qe1_A 5 GSPRVVRIVKSE--SGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGAT 79 (107)
T ss_dssp -CCEEEEEECBT--TBTCEEEECCSSSCCCCEESSSSEESCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCC
T ss_pred CCcEEEEEEECC--CCCCEEEEcccccCCcceeccccccCCceEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence 356788999987 6999999998543210 2246899999999999999 9999999999999998654
No 89
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=99.36 E-value=5.4e-12 Score=80.62 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=54.5
Q ss_pred CcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 37 ASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 37 ~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.....+.|.|.|..+ .+|||++.+.... ....+++|..|.++++|++.+.|++||+|++|||+++.+.+
T Consensus 6 ~~~~~~~v~l~k~~g-~~lG~~i~~~~~~-~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~ 74 (101)
T 2yt7_A 6 SGDNCREVHLEKRRG-EGLGVALVESGWG-SLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLP 74 (101)
T ss_dssp TTCCCEEEEEECCTT-CCCCEEEEECCCS-SSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSC
T ss_pred CCCceEEEEEEeCCC-CccCEEEEeCCCC-CCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 344678889988875 7999999853211 12336999999999999998889999999999999986543
No 90
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=99.36 E-value=1.8e-12 Score=79.94 Aligned_cols=59 Identities=27% Similarity=0.428 Sum_probs=49.7
Q ss_pred EEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 41 ~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.++|+| +++ .+|||++.+|.+.. .+++|..|.++++|++.| |++||+|++|||+++.++
T Consensus 2 ~~~v~l-~~~--~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~ 60 (85)
T 1rgw_A 2 AYSVTL-TGP--GPWGFRLQGGKDFN---MPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTM 60 (85)
T ss_dssp EEEEEE-CCS--SCCCEEECCCGGGT---SCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTC
T ss_pred cEEEEE-eCC--CccCEEEEeccCCC---CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCc
Confidence 356777 343 69999999987643 379999999999999977 999999999999999875
No 91
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.36 E-value=1.9e-12 Score=85.15 Aligned_cols=63 Identities=21% Similarity=0.396 Sum_probs=52.3
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
....+.+.+. .+|||+|.||.+... .+++|.+|.++|||++.|.|++||+|++|||+++.+++
T Consensus 18 ~~~~~~~~~~---~glG~~i~gg~~~~~--~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~ 80 (118)
T 1v6b_A 18 DVRLLRIKKE---GSLDLALEGGVDSPV--GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYT 80 (118)
T ss_dssp CEEEEEEESC---SCCCCEEEEBTTSSS--CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCB
T ss_pred eEEEEEECCC---CccCEEEEcccCCCC--CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 4555666654 499999999987643 25999999999999999779999999999999998754
No 92
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.36 E-value=7.4e-12 Score=86.88 Aligned_cols=81 Identities=31% Similarity=0.505 Sum_probs=65.8
Q ss_pred cccceEEeecCCCCCcceEEEEEEEeCCCCCcccEEEecCcCCCC--CcccEEEEEeCCCChhcccCCCCCCCeEEEECC
Q psy4600 23 EESQFCTLRRAGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNK 100 (108)
Q Consensus 23 ~~~~~~~~~r~~~~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~--~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG 100 (108)
....+.+.|. .+......++.|.+.+ .+|||++.++..... ...++||..|.|+|+|++.|+|++||+|++|||
T Consensus 85 ~~v~l~v~r~--~~~~~~~~~v~l~~~~--~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng 160 (196)
T 3gsl_A 85 SIVRLYVMRR--KPPAEKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 160 (196)
T ss_dssp SEEEEEEEEE--CCCCEEEEEEEEEEBT--TBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETT
T ss_pred CcEEEEEEec--CCCccccEEEEEecCC--CCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECC
Confidence 4456666666 4555677888998887 699999998876532 345899999999999999999999999999999
Q ss_pred eecccCC
Q psy4600 101 ITTSEYS 107 (108)
Q Consensus 101 ~~l~~~s 107 (108)
+++.+++
T Consensus 161 ~~v~~~~ 167 (196)
T 3gsl_A 161 VGLEDVM 167 (196)
T ss_dssp EECSSCB
T ss_pred CcCCCCC
Confidence 9998743
No 93
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=99.35 E-value=6.6e-12 Score=81.05 Aligned_cols=65 Identities=22% Similarity=0.198 Sum_probs=53.7
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCC---------CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPK---------GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~---------~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
+..+|.|.|... .+|||+|.++.+... ...+++|..|.++++|++.| |+.||+|++|||+++.++
T Consensus 7 ~~~~v~l~~~~~-~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~ 80 (109)
T 1q3o_A 7 KEKTVLLQKKDS-EGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKV 80 (109)
T ss_dssp EEEEEEEECCTT-SCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTC
T ss_pred CcEEEEEEECCC-CCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence 456788887653 799999999876421 13379999999999999998 999999999999998775
No 94
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.35 E-value=2.6e-12 Score=80.03 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=50.7
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
..++|++.+ + .+|||++.+|.+. ..+++|..|.++++|++.| |++||+|++|||+++.++
T Consensus 3 ~~~~v~~~~-~--~~~G~~l~gg~~~---~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~ 62 (89)
T 2q3g_A 3 DSFKVVLEG-P--APWGFRLQGGKDF---NVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSL 62 (89)
T ss_dssp EEEEEEEES-S--SCCCEEEEEEGGG---TEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGC
T ss_pred cEEEEEEcC-C--CcccEEEECcCCC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence 456677753 3 6999999998764 2489999999999999998 999999999999999865
No 95
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=99.35 E-value=8.9e-13 Score=87.77 Aligned_cols=72 Identities=29% Similarity=0.308 Sum_probs=57.9
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCC---C---CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSP---K---GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~---~---~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.....+..|.|.|.+...+|||++.++.+.. . ...++||+.|.++|+|++.|.|++||+|++|||+++.+.+
T Consensus 25 ~~~~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~ 102 (128)
T 1nf3_C 25 ILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKS 102 (128)
T ss_dssp TSCTTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCC
T ss_pred cCCCccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC
Confidence 3445678899999852279999999886421 1 1247999999999999999999999999999999997654
No 96
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.35 E-value=6.8e-13 Score=83.11 Aligned_cols=61 Identities=20% Similarity=0.308 Sum_probs=51.9
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+++|.|.|++ .+|||++.++.+. .+++|..|.++++|++.| |++||+|++|||+++.+++
T Consensus 3 ~pr~v~l~k~~--~~~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~ 63 (91)
T 2vsp_A 3 KPKLCRLAKGE--NGYGFHLNAIRGL----PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEP 63 (91)
T ss_dssp CEEEEEEECBT--TBTSCCCBCCTTC----SCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSC
T ss_pred CcEEEEEEeCC--CcccEEEEeccCC----CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence 56789999987 6999999876543 378999999999999998 9999999999999997543
No 97
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.35 E-value=6.1e-12 Score=82.97 Aligned_cols=69 Identities=20% Similarity=0.173 Sum_probs=57.5
Q ss_pred CcceEEEEEEEeCCCCCcccEEEecCcCCC-CCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 37 ASFTITTVSFTKGPGFKGLGFSIVGGKDSP-KGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 37 ~~~~~~~V~L~K~~~~~glGfsi~GG~~~~-~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.....++|.|.|... .+|||+|.++.... ....+++|..|.++++|++.|.|++||+|++|||+.+.++
T Consensus 12 ~~~~~~~v~l~k~~~-~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~ 81 (122)
T 1v5q_A 12 VHTETTEVVLTADPV-TGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDS 81 (122)
T ss_dssp CCEEEEEEEECCCSS-SSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSS
T ss_pred ccceeEEEEEEeCCC-CccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCC
Confidence 445788899999864 79999999874322 2345799999999999999998999999999999999764
No 98
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.35 E-value=3.2e-12 Score=79.28 Aligned_cols=58 Identities=22% Similarity=0.270 Sum_probs=48.0
Q ss_pred EEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 44 VSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 44 V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
+++.+.. ..+|||++.+|.+. ..+++|..|.|++||++.| |++||+|++|||+++.++
T Consensus 4 ~~v~~~~-~~~lG~~l~~~~~~---~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~ 61 (87)
T 2pa1_A 4 LTVDVAG-PAPWGFRITGGRDF---HTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGM 61 (87)
T ss_dssp EEEEECS-SSCCSEEEEEEGGG---TEEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTC
T ss_pred EEEEECC-CCccCEEEecccCC---CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCC
Confidence 4444433 27999999998764 2489999999999999987 999999999999999874
No 99
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=99.34 E-value=2.1e-12 Score=81.07 Aligned_cols=60 Identities=27% Similarity=0.386 Sum_probs=51.4
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
..++|.|.|+. .+|||++.++... .+++|..|.+++||++.| |++||+|++|||+++.++
T Consensus 5 ~~r~v~l~~~~--~~~G~~l~~~~~~----~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~ 64 (95)
T 3r68_A 5 QPRVVVIKKGS--NGYGFYLRAGPEQ----KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEAL 64 (95)
T ss_dssp CCEEEEEECBT--TBCSCEEEEC--C----CSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTC
T ss_pred CcEEEEEecCC--CcccEEEEecCCC----CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCC
Confidence 45678898876 7999999987543 389999999999999999 999999999999998876
No 100
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.34 E-value=3.2e-12 Score=81.55 Aligned_cols=62 Identities=26% Similarity=0.358 Sum_probs=53.3
Q ss_pred cceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 38 ~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
....++|.|.|+. .+|||++.++.+. .+++|..|.++++|++.| |++||+|++|||+++.++
T Consensus 4 ~~~~r~v~l~k~~--~g~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~ 65 (102)
T 2d90_A 4 GSSGRVVVIKKGS--NGYGFYLRAGPEQ----KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEAL 65 (102)
T ss_dssp CSSSEEEEEECCS--SSSSCEEEECSSS----SSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTS
T ss_pred CCCCEEEEEeeCC--CCccEEEEeecCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence 3456789999987 7999999985432 389999999999999998 999999999999998765
No 101
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=99.33 E-value=4.8e-12 Score=79.18 Aligned_cols=56 Identities=27% Similarity=0.290 Sum_probs=47.6
Q ss_pred EEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 43 ~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.|+|.|.....+|||++.+ ++||..|.++|+|++.|+|++||+|++|||+++.+++
T Consensus 3 ~v~l~~~~~~~~~G~~~~~---------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~ 58 (88)
T 3e17_A 3 GVLLMKSRANEEYGLRLGS---------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMS 58 (88)
T ss_dssp EEEEECBTTBCCCCEEEEE---------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC
T ss_pred EEEEEeCCCCCCCCEEEeC---------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 4666664433689999964 6999999999999999999999999999999997664
No 102
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=99.33 E-value=2.7e-12 Score=90.62 Aligned_cols=67 Identities=24% Similarity=0.376 Sum_probs=57.4
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+....+..|.|.|.++ .+|||++.||... ..++||..|.++|+|++.| |++||+|++|||+++.+++
T Consensus 80 ~~~~~~~~v~l~k~~~-~~lG~~i~~~~~~---~~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~ 146 (192)
T 3k1r_A 80 RRSRKLKEVRLDRLHP-EGLGLSVRGGLEF---GCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCT 146 (192)
T ss_dssp CCCSSCEEEEEETTST-TCCCEEEEEEGGG---TEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCC
T ss_pred CCCCceEEEEEEeCCC-CceeEEEEccccc---CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence 3445678899999864 7999999998653 2489999999999999999 9999999999999998754
No 103
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=99.33 E-value=6.2e-12 Score=82.36 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=53.1
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
...+|+|.|.+. .+|||++.++.+.. .+++|..|.++++|++.|+|++||+|++|||.++.+.
T Consensus 24 ~~~~V~l~~~~~-~~lG~~l~~~~~~~---~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~ 86 (114)
T 2gzv_A 24 VPGKVTLQKDAQ-NLIGISIGGGAQYC---PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGK 86 (114)
T ss_dssp CCEEEEEECCTT-SCCSEEEEECCC-----CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTC
T ss_pred CCEEEEEEECCC-CcEeEEEEeCCCCC---CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCC
Confidence 456789999874 56999999876532 3799999999999999999999999999999998543
No 104
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.32 E-value=7.3e-13 Score=84.37 Aligned_cols=67 Identities=31% Similarity=0.520 Sum_probs=56.5
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+.....+++.|.+.. .+|||++.++.+.. .+++|..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 7 ~~~~~~~~v~l~~~~--~g~G~~~~~~~~~~---~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~ 73 (103)
T 1wfv_A 7 GQDFDYFTVDMEKGA--KGFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMT 73 (103)
T ss_dssp CCCSCCEECCEECCT--TSSSBCCEEETTTT---EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCC
T ss_pred ccCceEEEEEEecCC--CcCCEEEeccccCC---CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence 344566778888876 68999999886542 48999999999999999999999999999999998753
No 105
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.32 E-value=7.9e-12 Score=81.42 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=53.8
Q ss_pred cceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 38 ~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
...+++|.|.|... .+|||++.++. .+++|..|.++++|++.|.|++||+|++|||+.+.+++
T Consensus 23 ~~~~~~v~l~k~~~-~~lG~~i~~~~------~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~ 85 (113)
T 1va8_A 23 GETVKIVRIEKARD-IPLGATVRNEM------DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKD 85 (113)
T ss_dssp TEECEEEEEEECTT-CCCCEEEEECS------SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCC
T ss_pred CCceEEEEEEeCCC-CceeEEEEeCC------CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 34677899999873 59999998762 38999999999999999966999999999999998654
No 106
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.31 E-value=7.5e-12 Score=88.05 Aligned_cols=67 Identities=21% Similarity=0.184 Sum_probs=58.2
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCC-CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPK-GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~-~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.+.++|.|.|++. .+|||++.+|.+... ...+++|..|.+++||++.|+|+.||+|++|||+.+.++
T Consensus 5 ~~~~~v~l~~~~~-~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~ 72 (196)
T 1p1d_A 5 TETTEVVLTADPV-TGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDS 72 (196)
T ss_dssp CEEEEEEEECBTT-TBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTS
T ss_pred cEEEEEEEEeCCC-CccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCC
Confidence 4678899999875 899999999976532 356899999999999999999999999999999998764
No 107
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=99.31 E-value=8.5e-12 Score=78.13 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=50.5
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.+++|.|.|+. .+|||++.+. .+++|..|.++++|++.| |+.||+|++|||+++.++
T Consensus 3 ~~r~v~l~~~~--~g~G~~l~~~-------~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~ 59 (91)
T 2f5y_A 3 RYRQITIPRGK--DGFGFTICCD-------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHW 59 (91)
T ss_dssp EEEEEEEECBT--TBTSEEEECS-------SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTC
T ss_pred ceEEEEEEeCC--CCccEEEecC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence 56789999987 7999999764 268999999999999998 999999999999998865
No 108
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=2.5e-12 Score=82.45 Aligned_cols=63 Identities=22% Similarity=0.252 Sum_probs=53.6
Q ss_pred CcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 37 ASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 37 ~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
....+++|.|.|.. .+|||++.++.. ..++||..|.++++|++.| |++||+|++|||+++.++
T Consensus 5 ~~~~~r~v~l~k~~--~~~G~~l~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~ 67 (106)
T 2eei_A 5 SSGQPRLCYLVKEG--GSYGFSLKTVQG----KKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDA 67 (106)
T ss_dssp CCSSSEEEEEECCS--SSCSCCEECCSS----CCSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTC
T ss_pred CCCCCEEEEEEECC--CCCCEEEEeccC----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence 34466788999975 799999987643 2489999999999999999 999999999999998764
No 109
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.31 E-value=2.1e-12 Score=83.49 Aligned_cols=65 Identities=31% Similarity=0.505 Sum_probs=56.3
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.....++.|.|.|.. .+|||++.++.+. .+++|..|.++++|++.|+|++||+|++|||+.+.++
T Consensus 11 ~~~~~~~~v~l~k~~--~glG~~l~~~~~~----~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~ 75 (113)
T 1um7_A 11 GDAREPRKIILHKGS--TGLGFNIVGGEDG----EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNA 75 (113)
T ss_dssp CCCCSEEEEEEECCS--SCSSBCCBCCSTT----CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTC
T ss_pred cCCCceEEEEEEECC--CcccEEEEeccCC----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCC
Confidence 344578889999986 7999999987642 3899999999999999988999999999999998775
No 110
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.31 E-value=1.2e-11 Score=78.22 Aligned_cols=60 Identities=22% Similarity=0.429 Sum_probs=51.4
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
....+.|.|.. .+|||++.++.+. .+++|..|.++++|++.| |++||+|++|||+++.++
T Consensus 9 ~~~~~~l~~~~--~g~G~~~~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~ 68 (98)
T 2jxo_A 9 RPRLCTMKKGP--SGYGFNLHSDKSK----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGK 68 (98)
T ss_dssp CCEEEEEECTT--TCCCEEEECCCSS----SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTC
T ss_pred CcEEEEEEeCC--CcccEEEEecCCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence 34567888876 7999999987543 389999999999999999 999999999999998774
No 111
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.30 E-value=2.6e-12 Score=83.63 Aligned_cols=64 Identities=33% Similarity=0.511 Sum_probs=54.9
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+.+.|.|.|.. .+|||++.++.+.+. .+++|..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 17 ~~~~v~l~~~~--~glG~~l~~~~~~~~--~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~ 80 (116)
T 2dm8_A 17 QEMIIEISKGR--SGLGLSIVGGKDTPL--NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSS 80 (116)
T ss_dssp SCEEEEEECCS--SCCCCCCBCCTTSSC--SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSC
T ss_pred CEEEEEEEECC--CcccEEEeCCCCCCc--CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCC
Confidence 45778888876 799999998876431 38999999999999999999999999999999998753
No 112
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=99.30 E-value=1e-11 Score=79.09 Aligned_cols=67 Identities=27% Similarity=0.439 Sum_probs=51.9
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCC------CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPK------GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~------~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+++|.|.|.+. ..|||++.++.+... ...+++|..|.++|+|++.|+|++||+|++|||+++.+++
T Consensus 4 dp~~v~l~~~~~-~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~ 76 (103)
T 2fcf_A 4 QPRRVELWREPS-KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDAS 76 (103)
T ss_dssp SCEEEEECCCC--CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCC
T ss_pred CCEEEEEEeCCC-CceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCC
Confidence 346788888764 689999998755321 1248999999999999999999999999999999998743
No 113
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.30 E-value=9.2e-12 Score=102.91 Aligned_cols=67 Identities=31% Similarity=0.630 Sum_probs=59.6
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCC--CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~--~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
...++|.|.|+. .+|||+|.||.+.+. +..++||+.|.++|+|+++|+|+.||+|++|||+++.+++
T Consensus 58 ~~~~~v~l~k~~--~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~ 126 (721)
T 2xkx_A 58 MEYEEITLERGN--SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVT 126 (721)
T ss_pred ceEEEEEEEeCC--CCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCC
Confidence 456789999987 699999999998753 4678999999999999999999999999999999998764
No 114
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=3e-12 Score=80.59 Aligned_cols=57 Identities=21% Similarity=0.166 Sum_probs=49.3
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeec
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITT 103 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l 103 (108)
.++.|+|.|.++ .+|||++.+. ..+++|..|.++++|++.|.|++||+|++|||+++
T Consensus 6 ~~r~v~l~k~~~-~~lG~~i~~~------~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v 62 (91)
T 2e7k_A 6 SGRMVGIRKTAG-EHLGVTFRVE------GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV 62 (91)
T ss_dssp CSCBCCBCCCTT-CCCCEEEEES------SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC
T ss_pred CcEEEEEEECCC-CcEeEEEEec------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC
Confidence 456678877664 7999999872 23899999999999999988999999999999998
No 115
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.29 E-value=1.1e-11 Score=82.16 Aligned_cols=67 Identities=27% Similarity=0.439 Sum_probs=54.1
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCC------CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPK------GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~------~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
...+|.+.|... .+|||++.++.+... ...+++|..|.++|||++.|+|++||+|++|||+++.+++
T Consensus 24 ~p~~v~l~k~~~-~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~ 96 (123)
T 2iwq_A 24 QPRRVELWREPS-KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDAS 96 (123)
T ss_dssp CCEEEEECCCTT-SCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCC
T ss_pred CCEEEEEEecCC-CCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence 457788888764 689999998765321 2358999999999999999999999999999999998753
No 116
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.29 E-value=8.7e-12 Score=79.38 Aligned_cols=65 Identities=29% Similarity=0.465 Sum_probs=53.5
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+..++.|.+.....+|||++.++.+.. .+++|..|.++++|++.| |++||+|++|||+.+.+++
T Consensus 7 ~~~~~v~l~~~~~~~~lG~~~~~~~~~~---~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~ 71 (101)
T 1uez_A 7 GEVRLVSLRRAKAHEGLGFSIRGGSEHG---VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVT 71 (101)
T ss_dssp CCCEEECCCCCCTTTCSSEEEEECTTTT---CCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCC
T ss_pred CccEEEEEEECCCCCcccEEEeCCCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcC
Confidence 3566777777433379999999886532 489999999999999998 9999999999999987753
No 117
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=99.29 E-value=2.1e-11 Score=76.66 Aligned_cols=60 Identities=25% Similarity=0.359 Sum_probs=52.1
Q ss_pred CcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 37 ASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 37 ~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.....++|.|.|+. .+|||++.+. .+++|..|.++++|++.| |++||+|++|||+.+.++
T Consensus 5 ~~~~~r~v~l~~~~--~~~G~~l~~~-------~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~ 64 (93)
T 2dls_A 5 SSGVQRCVIIQKDQ--HGFGFTVSGD-------RIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNS 64 (93)
T ss_dssp CCCCEEEEEEECSS--SSCCEEEECS-------SSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSS
T ss_pred CCCCCEEEEEEeCC--CceeEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence 34567788999887 7999999753 379999999999999998 999999999999998775
No 118
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=99.28 E-value=1.3e-11 Score=78.76 Aligned_cols=53 Identities=34% Similarity=0.375 Sum_probs=46.1
Q ss_pred cccEEEecCcCCC---------CCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 54 GLGFSIVGGKDSP---------KGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 54 glGfsi~GG~~~~---------~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+|||++.|+.+.. ....++||..|.++++|++.| |++||+|++|||+++.+++
T Consensus 20 ~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~ 81 (104)
T 3sfj_A 20 ILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVT 81 (104)
T ss_dssp ECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCC
T ss_pred cccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence 6999999988752 235689999999999999999 9999999999999987654
No 119
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=6.7e-12 Score=79.05 Aligned_cols=61 Identities=23% Similarity=0.308 Sum_probs=51.4
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
...++|.| +++ .+|||++.+|.+.. .+++|..|.++++|++.| |++||+|++|||+.+.++
T Consensus 7 ~~~~~v~l-~~~--~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~ 67 (94)
T 2eeg_A 7 GMPHSVTL-RGP--SPWGFRLVGGRDFS---APLTISRVHAGSKAALAA-LCPGDLIQAINGESTELM 67 (94)
T ss_dssp CCCEEEEE-CCS--SCCSCCEECCTTTT---SCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTC
T ss_pred CceEEEEE-eCC--CccCEEEECccCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence 34567777 444 69999999987642 379999999999999998 999999999999998765
No 120
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=99.28 E-value=9.5e-12 Score=79.72 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=52.0
Q ss_pred EEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 42 TTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 42 ~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+.|.|.|.++ .+|||.+..+... .+++|..|.+++||++.| |++||+|++|||+++.+++
T Consensus 3 r~v~l~~~~~-~~~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~ 62 (106)
T 3ngh_A 3 RESKLSKQEG-QNYGFFLRIEKDT----DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEE 62 (106)
T ss_dssp EEEEEECCTT-CCCCCEEECCTTC----CSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSC
T ss_pred EEEEEEeCCC-CeeCEEEEEEeCC----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence 5688888875 7899999877543 379999999999999998 9999999999999998764
No 121
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.9e-11 Score=77.76 Aligned_cols=66 Identities=29% Similarity=0.402 Sum_probs=55.5
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.....+++|+|.|.+. ..|||++.++.+. ..+++|..|.++++|++.| |++||+|++|||+.+.++
T Consensus 6 ~~~~~~~~v~l~~~~~-~~lG~~~~~~~~~---~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~ 71 (100)
T 2eeh_A 6 SGSDIIHSVRVEKSPA-GRLGFSVRGGSEH---GLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLEST 71 (100)
T ss_dssp SCCCEECCEEECCCSS-SSCSEEEECCTTT---TCCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSC
T ss_pred CCCCeEEEEEEEECCC-CCccEEEEccccC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence 3455678899999874 5699999987542 2489999999999999999 999999999999998875
No 122
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=99.27 E-value=1.9e-11 Score=75.87 Aligned_cols=59 Identities=32% Similarity=0.432 Sum_probs=48.0
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.+.++|+|.|++ .+|||++.+..+. .+++|..+ ++++|+ .| |++||+|++|||+++.++
T Consensus 2 ~~~~~v~l~k~~--~g~G~~~~~~~~~----~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~ 60 (88)
T 3bpu_A 2 MELITVHIVKGP--MGFGFTIADSPGG----GGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQAL 60 (88)
T ss_dssp EEEEEEEEECBT--TBSSCEEEECTTS----SSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTS
T ss_pred CcEEEEEEEcCC--CceeEEEEecCCC----CcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCC
Confidence 367889999987 7999999876432 38999997 999999 55 999999999999998775
No 123
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.27 E-value=5.6e-12 Score=80.61 Aligned_cols=61 Identities=23% Similarity=0.342 Sum_probs=52.1
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
...++|.|. ++ .+|||++.+|.+.. .+++|..|.++++|++.| |++||+|++|||+.+.++
T Consensus 4 g~~~~v~l~-~~--~~~G~~l~gg~~~~---~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~ 64 (103)
T 1wf7_A 4 GSSGSVSLV-GP--APWGFRLQGGKDFN---MPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGM 64 (103)
T ss_dssp CCCEEEEEE-SS--SCCSCCEEEETTTT---EEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSC
T ss_pred CCEEEEEEe-CC--CccCEEEeccccCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence 356778887 33 69999999987642 479999999999999998 999999999999998775
No 124
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.26 E-value=7.7e-12 Score=83.89 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=53.7
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
......+++.|.|+. .+|||++.+. ..+++|..|.++|||++.|+|++||+|++|||+++.+.
T Consensus 23 ~~~~~~~~~~l~k~~--~glG~~i~~~------~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~ 85 (126)
T 1wif_A 23 SSLNKVIQTKLTVGN--LGLGLVVIQN------GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGY 85 (126)
T ss_dssp CCCCCEEEEEEECCT--TCCCCCEEEE------TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTC
T ss_pred cCCCceEEEEEecCC--ceEeEEEEcC------CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCC
Confidence 334578889999987 7999999863 13799999999999999999999999999999998644
No 125
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.26 E-value=3e-11 Score=78.04 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=52.1
Q ss_pred EEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 41 ~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
+++|.|.|+.. .+|||++.++.+ ..+++|..|.++++|++.|.|+.||+|++|||..+.++
T Consensus 2 ~~~v~l~~~~~-~glG~~~~~~~~----~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~ 62 (112)
T 1qau_A 2 VISVRLFKRKV-GGLGFLVKERVS----KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 62 (112)
T ss_dssp EEEEEEECBTT-TBTSEEEEECSS----SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTS
T ss_pred EEEEEEEcCCC-CceeEEEEecCC----CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCC
Confidence 56789988754 799999987653 23899999999999999995599999999999998774
No 126
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.26 E-value=1.8e-11 Score=76.47 Aligned_cols=60 Identities=22% Similarity=0.261 Sum_probs=49.9
Q ss_pred EEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 41 ~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.++|.+... .+|||++.+|.+.. .+++|..|.+++||++.| |++||+|++|||+++.+++
T Consensus 4 ~~~v~~~~~---~~~G~~l~~~~~~~---~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~ 63 (91)
T 2pkt_A 4 TQQIDLQGP---GPWGFRLVGGKDFE---QPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMT 63 (91)
T ss_dssp EEEEEEESS---SCCSEEEEEEGGGT---EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCC
T ss_pred cEEEEECCC---CCCCEEEEccCCCC---CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence 455666532 69999999986642 489999999999999998 9999999999999987754
No 127
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.26 E-value=2.7e-11 Score=85.26 Aligned_cols=65 Identities=26% Similarity=0.285 Sum_probs=55.6
Q ss_pred cceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 38 ~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
....+.|.|.|..+ .+|||++.+|.+.. .++||..|.++++|++.+.|+.||+|++|||+++.++
T Consensus 5 ~~~~~~v~l~~~~~-~~lG~~i~~~~~~~---~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~ 69 (200)
T 2qt5_A 5 FKGSTVVELMKKEG-TTLGLTVSGGIDKD---GKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKF 69 (200)
T ss_dssp CEEEEEEEEECCTT-CCCCEEEECCTTSS---SCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTS
T ss_pred cCCCEEEEEEeCCC-CCCCEEEecccCCC---CCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCC
Confidence 34567788888764 89999999987653 3789999999999999856999999999999999876
No 128
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=98.91 E-value=5e-13 Score=87.55 Aligned_cols=63 Identities=29% Similarity=0.404 Sum_probs=52.8
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.+++|.|.|... .+|||++.+|.+.. .+++|..|.++|+|++++.|++||+|++|||+++.+.
T Consensus 27 ~~~~v~l~k~~~-~glG~~l~~g~~~~---~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~ 89 (112)
T 2lob_A 27 GIRKVLLLKEDH-EGLGISITGGKEHG---VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDT 89 (112)
Confidence 455688888764 79999999987642 3799999999999999555999999999999998654
No 129
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=99.25 E-value=4.9e-12 Score=77.79 Aligned_cols=57 Identities=19% Similarity=0.360 Sum_probs=50.4
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.+++|+|.|+. .+|||++.++ .+++|..|.++++|++.| |+.||+|++|||+++.++
T Consensus 2 ~~r~v~l~~~~--~g~G~~~~~~-------~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~ 58 (83)
T 2kv8_A 2 RVRSVEVARGR--AGYGFTLSGQ-------APCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKA 58 (83)
T ss_dssp CEEEEEECCCS--SCCSCBCCCS-------SSCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSC
T ss_pred CcEEEEEEeCC--CcccEEEEcC-------CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCC
Confidence 56789999987 7999998753 269999999999999998 999999999999999875
No 130
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=99.24 E-value=5e-11 Score=77.32 Aligned_cols=63 Identities=24% Similarity=0.315 Sum_probs=52.1
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
...+|.+.+... .+|||++.++.+.. .+++|..|.++++|++.| |++||+|++|||+.+.+++
T Consensus 15 ~~~~v~~~~~~~-~~lG~~l~~~~~~~---~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~ 77 (114)
T 1x5n_A 15 KEKKVFISLVGS-RGLGCSISSGPIQK---PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLD 77 (114)
T ss_dssp SSEEEEECCCSS-CCCCEEEEECCSSS---CSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCC
T ss_pred CcEEEEEEEcCC-CceeEEEeecCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence 446677766543 79999999886532 489999999999999998 9999999999999987753
No 131
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=9.3e-12 Score=79.38 Aligned_cols=61 Identities=20% Similarity=0.208 Sum_probs=49.2
Q ss_pred EEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 41 ~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
..++.+.+... .+|||++.+|.+.. .+++|..|.+++||++.|.|++||+|++|||+++.+
T Consensus 10 ~~~~~v~~~~~-~~~G~~~~gg~~~~---~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~ 70 (100)
T 2edp_A 10 FQYVPVQLQGG-APWGFTLKGGLEHC---EPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG 70 (100)
T ss_dssp CEEEEEECCSC-SCCCCCEEEEGGGT---EEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCS
T ss_pred cEEEEEEECCC-CCcCEEEeccCCCC---CCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccc
Confidence 33444444432 69999999987643 479999999999999995699999999999999876
No 132
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=99.23 E-value=4.9e-11 Score=76.44 Aligned_cols=66 Identities=23% Similarity=0.346 Sum_probs=51.0
Q ss_pred ceEEEEEEEeCCC-CCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPG-FKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~-~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
...+.|.|.|... ..+|||++.+.... +..+++|..|.++++|++.| |+.||+|++|||+++.+++
T Consensus 5 ~~~~~v~i~k~~~~~~~~Gf~v~~~~~~--~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~ 71 (94)
T 3kzd_A 5 KVTHSIHIEKSDTAADTYGFSLSSVEED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALN 71 (94)
T ss_dssp CEEEEEEEEC------CCSEEEEEECSS--SSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCC
T ss_pred cceeEEEEEeCCCCcCCcCEEEEecCCC--CcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence 3567788888762 13799999875432 33589999999999999998 9999999999999998653
No 133
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.23 E-value=4.4e-11 Score=84.13 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=58.8
Q ss_pred cceEEeecCCCCCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecc
Q psy4600 25 SQFCTLRRAGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTS 104 (108)
Q Consensus 25 ~~~~~~~r~~~~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~ 104 (108)
..+.+.|. .......+++.|.+... .+|||++.++. .++||..|.++|+|++.|+|+.||+|++|||+++.
T Consensus 100 v~l~v~R~--~~~~~~~~~v~l~~~~~-~~lG~~~~~~~------~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~ 170 (206)
T 3r0h_A 100 VTLTVFRA--DPPELEKFNVDLMKKAG-KELGLSLSPNE------IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALE 170 (206)
T ss_dssp EEEEEECC--SSCCEEEEEEEEECCTT-CCCCEEEEECS------SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECT
T ss_pred eEEEEEec--ccCCCcEEEEEEecCCC-CccCeEEEcCC------ceEEEEEECCCChHHHcCCCCCCCEEEEECCEECC
Confidence 45555554 34445677788887754 68999998542 37999999999999999999999999999999998
Q ss_pred cCC
Q psy4600 105 EYS 107 (108)
Q Consensus 105 ~~s 107 (108)
+++
T Consensus 171 ~~~ 173 (206)
T 3r0h_A 171 GLP 173 (206)
T ss_dssp TCC
T ss_pred CCC
Confidence 753
No 134
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.22 E-value=4.2e-11 Score=78.10 Aligned_cols=64 Identities=28% Similarity=0.310 Sum_probs=54.6
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+....++.|.|.+.. .+|||++.++.+ .+++|..|.++++|++.| |++||+|++|||+.+.+++
T Consensus 15 ~~l~~~~~v~l~~~~--~~lG~~~~~~~~-----~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~ 78 (117)
T 1uit_A 15 PYVEEPRHVKVQKGS--EPLGISIVSGEK-----GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSAT 78 (117)
T ss_dssp CCSCCCEEEEEECSS--CCCCEEEEECTT-----SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCC
T ss_pred ccCCCCEEEEEEeCC--CCccEEEEccCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence 444566789999876 799999998753 389999999999999998 9999999999999987653
No 135
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=99.22 E-value=5.8e-11 Score=78.36 Aligned_cols=60 Identities=22% Similarity=0.429 Sum_probs=52.2
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
..+.+.|.|.. .+|||++.++.+. .+++|..|.++++|++.| |+.||+|++|||+++.++
T Consensus 9 ~~r~v~l~~~~--~g~G~~l~~~~~~----~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~ 68 (128)
T 2kjd_A 9 RPRLCTMKKGP--SGYGFNLHSDKSK----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGK 68 (128)
T ss_dssp CCEEEEEECCS--SSCCEEEEECSSS----CSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTC
T ss_pred CcEEEEEecCC--CcccEEEEecCCC----CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCC
Confidence 45678888886 7999999987543 389999999999999999 999999999999998774
No 136
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.21 E-value=4.6e-11 Score=80.78 Aligned_cols=69 Identities=29% Similarity=0.268 Sum_probs=54.1
Q ss_pred cceEEEEEEEeCCC--CCcccEEEecCcCCC---------CCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 38 SFTITTVSFTKGPG--FKGLGFSIVGGKDSP---------KGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 38 ~~~~~~V~L~K~~~--~~glGfsi~GG~~~~---------~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
....++|.|.|... ..+|||++.+|.+.. ....+++|..|.+++||++.| |++||+|++|||+++.++
T Consensus 21 ~~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~ 99 (139)
T 2vz5_A 21 QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMV 99 (139)
T ss_dssp -CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTC
T ss_pred CCceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcCCC
Confidence 34567788877431 137999999987631 124699999999999999999 999999999999998865
Q ss_pred C
Q psy4600 107 S 107 (108)
Q Consensus 107 s 107 (108)
+
T Consensus 100 ~ 100 (139)
T 2vz5_A 100 T 100 (139)
T ss_dssp C
T ss_pred C
Confidence 3
No 137
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=99.21 E-value=3.6e-11 Score=84.02 Aligned_cols=53 Identities=30% Similarity=0.416 Sum_probs=45.9
Q ss_pred CcccEEEecCcCC---CC--CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 53 KGLGFSIVGGKDS---PK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 53 ~glGfsi~GG~~~---~~--~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+|||+|.||.+. +. ...++||..|.++++|++ | |++||+|++|||+++.+++
T Consensus 2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~ 59 (195)
T 2qbw_A 2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIE 59 (195)
T ss_dssp CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCC
T ss_pred CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCC
Confidence 6899999998753 22 456999999999999999 6 9999999999999998754
No 138
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=99.20 E-value=7.8e-11 Score=77.81 Aligned_cols=58 Identities=26% Similarity=0.350 Sum_probs=47.9
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+.++|.|.|++ .||||+|.++.. +.+|++|.+ +| +.+.|++||+|++|||+++.+++
T Consensus 11 ~~~~~V~L~Kg~--~G~GFsI~~~~~------g~~V~~I~~--~~-~~aGL~~GD~Il~VNG~~v~~~~ 68 (113)
T 3soe_A 11 GLLVTIPLIKGP--KGFGFAIADSPT------GQKVKMILD--SQ-WCQGLQKGDIIKEIYHQNVQNLT 68 (113)
T ss_dssp CEEEEEEEECBT--TBSSEEEEEETT------EEEEEEESC--GG-GSTTCCTTCEEEEETTEECTTSC
T ss_pred CCEEEEEEEECC--CcccEEEeCCCC------CcEEEEecC--hH-HhCCCCCCCEEEEECCEECCCCC
Confidence 367899999987 799999976532 678999988 34 45679999999999999999875
No 139
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=99.18 E-value=5e-11 Score=75.44 Aligned_cols=62 Identities=15% Similarity=0.053 Sum_probs=49.1
Q ss_pred EEEEEeCCCCCcccEEEecCcCCC----CCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 43 TVSFTKGPGFKGLGFSIVGGKDSP----KGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 43 ~V~L~K~~~~~glGfsi~GG~~~~----~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+|.|.|.. .+|||++.++.... ....+++|..|.++++|++.| |+.||+|++|||+++.+++
T Consensus 5 ~v~l~~~~--~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~ 70 (99)
T 3khf_A 5 PIVIHSSG--KKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLV 70 (99)
T ss_dssp CEEEEC-C--CCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCC
T ss_pred CEEEEeCC--CCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence 36677765 79999999765321 112377999999999999999 9999999999999998654
No 140
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=99.16 E-value=1e-10 Score=74.78 Aligned_cols=65 Identities=18% Similarity=0.176 Sum_probs=51.6
Q ss_pred EEEEEEEeCCCCCcccEEEecCcCC----CCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 41 ITTVSFTKGPGFKGLGFSIVGGKDS----PKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 41 ~~~V~L~K~~~~~glGfsi~GG~~~----~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
...+.|.|... .+|||++.+.... .....+++|..|.++++|++.| |++||+|++|||+++.+++
T Consensus 16 ~~~v~l~~~~~-~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~ 84 (104)
T 2z17_A 16 RKLVTVEKQDN-ETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFT 84 (104)
T ss_dssp CCEEEEECCTT-SCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCC
T ss_pred ceEEEEEeCCC-CCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCC
Confidence 34566888764 6899999984321 1123589999999999999999 9999999999999987543
No 141
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=99.13 E-value=9e-11 Score=76.66 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=49.1
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
..++|.|.|++ .+|||++.+. .+++|..|.++++|++.| |+.||+|++|||.++.++
T Consensus 23 ~~r~v~l~k~~--~~~G~~l~~~-------~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~ 79 (109)
T 2vsv_A 23 MPRSIRFTAEE--GDLGFTLRGN-------APVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWL 79 (109)
T ss_dssp SCEEEEECCGG--GCCCEEEESS-------SSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTC
T ss_pred CCEEEEEEeCC--CceeEEEeCC-------CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence 45678898876 7999999753 268999999999999988 999999999999998754
No 142
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=9.4e-11 Score=77.07 Aligned_cols=64 Identities=23% Similarity=0.371 Sum_probs=52.5
Q ss_pred eEEEEEEEeCCCC-CcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 40 TITTVSFTKGPGF-KGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 40 ~~~~V~L~K~~~~-~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.+.++.|.|.... .+|||+|.+.... +..+++|..|.++++|++.| |++||+|++|||+++.++
T Consensus 15 ~~~~v~l~k~~~~~~~~G~~v~~~~~~--~~~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~ 79 (114)
T 2d8i_A 15 VTQSIHIEKSDTAADTYGFSLSSVEED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADAL 79 (114)
T ss_dssp EEEEEEEECSCTTTCCCCCEEEEEEET--TEEEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGC
T ss_pred ceEEEEEEeCCCCccccCEEEEecCcC--CcCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCc
Confidence 5678899887631 1799999875432 22489999999999999999 999999999999998765
No 143
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.13 E-value=2.4e-11 Score=76.45 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=44.8
Q ss_pred CcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 53 KGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 53 ~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.+|||++.+|.+. ..+++|..|.+++||++.| |++||+|++|||+++.++
T Consensus 16 ~~lG~~l~~g~~~---~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~ 65 (94)
T 1vb7_A 16 APWGFRISGGRDF---HTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENM 65 (94)
T ss_dssp SCCSBCCEEETTT---TEEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTC
T ss_pred CCccEEEecccCC---CCCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCC
Confidence 7999999998763 2489999999999999988 999999999999998775
No 144
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.13 E-value=1.5e-10 Score=75.20 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=52.3
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
..+++.|.+... .+|||++.++.+. .+++|..|.++++|++.| |++||+|++|||+++.+.
T Consensus 13 dp~~~~l~~~~~-~~~G~~l~~~~~~----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~ 73 (114)
T 2edz_A 13 NPRECKLSKQEG-QNYGFFLRIEKDT----DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKE 73 (114)
T ss_dssp CCEEEEEECCTT-CCCSCEEECCTTC----CSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSS
T ss_pred CCEEEEEeCCCC-CcccEEEEEecCC----CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCC
Confidence 567788888764 7899999876442 489999999999999999 999999999999998764
No 145
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.12 E-value=6.6e-11 Score=78.18 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=53.9
Q ss_pred cceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 38 ~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
...+++|.|.|+.. .+|||++.+..+ ..+++|..|.++++|++.|.|+.||+|++|||+.+.++
T Consensus 6 ~~~~~~v~l~~~~~-~glG~~~~~~~~----~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~ 69 (127)
T 1b8q_A 6 EPNVISVRLFKRKV-GGLGFLVKERVS----KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 69 (127)
T ss_dssp CCCSEEEEEECTTT-SCCSCCEEECTT----SSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSS
T ss_pred CCceEEEEEEeCCC-CcEeEEEEecCC----CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCC
Confidence 34577889999864 799999987643 24899999999999999995599999999999998874
No 146
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=1.6e-11 Score=81.29 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=52.2
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCC-------------------------CCcccEEEEEeCCCChhcccCCCCCCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSP-------------------------KGIMGIYVKTIFPTGQAADTGSLKEDT 93 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~-------------------------~~~~gi~I~~v~pgg~A~~~G~L~~GD 93 (108)
...++|.|.|.. .+|||+|.+..... ....+++|..|.++++|++.| |++||
T Consensus 7 ~~~r~v~l~r~~--~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD 83 (126)
T 2yuy_A 7 GGPKTVTLKRTS--QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGD 83 (126)
T ss_dssp SSCCCEEEECCS--SSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHT-CCSSC
T ss_pred CCCEEEEEEECC--CCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcC-CCCCC
Confidence 345578999987 79999998632110 012479999999999999999 99999
Q ss_pred eEEEECCeecccCC
Q psy4600 94 DYKISNKITTSEYS 107 (108)
Q Consensus 94 ~il~VNG~~l~~~s 107 (108)
+|++|||+++.+++
T Consensus 84 ~I~~ing~~v~~~~ 97 (126)
T 2yuy_A 84 RIIKVNGESVIGKT 97 (126)
T ss_dssp CCCEETTEECSSCC
T ss_pred EEEEECCEECCCCC
Confidence 99999999997554
No 147
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.09 E-value=6.6e-10 Score=70.43 Aligned_cols=61 Identities=26% Similarity=0.336 Sum_probs=48.7
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+...+.+++.|.|.. .+|||+|.+.. .+++|..|.++ |++. .|++||+|++|||+++.+++
T Consensus 6 ~~~~~~~~v~l~~~~--~g~G~~i~~~~------~Gv~V~~v~~~--a~~a-GL~~GD~I~~vng~~v~~~~ 66 (96)
T 1ujv_A 6 SGQAELMTLTIVKGA--QGFGFTIADSP------TGQRVKQILDI--QGCP-GLCEGDLIVEINQQNVQNLS 66 (96)
T ss_dssp CCCCCCEEEEEECCS--SSSSEEEEEET------TEEEEEEESCG--GGST-TCCSSCEEEEETTEECSSCC
T ss_pred CCCceEEEEEEEeCC--CceeEEEEcCC------CCEEEEEEecc--cccC-CCCCCCEEEEECCEECCCCC
Confidence 344567889999987 79999997432 27999999983 5554 59999999999999998763
No 148
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.08 E-value=1.1e-09 Score=76.89 Aligned_cols=66 Identities=20% Similarity=0.306 Sum_probs=54.1
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCC-CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPK-GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~-~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
....|+|.+.. .+|||++.+|..... ...+++|..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 106 ~~~~v~l~~~~--~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~ 172 (200)
T 2qt5_A 106 RTVEVTLHKEG--NTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTT 172 (200)
T ss_dssp EEEEEEEECBT--TBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC
T ss_pred eEEEEEEecCC--CCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence 45667777655 789999998864321 2458999999999999999999999999999999998554
No 149
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.08 E-value=6.3e-10 Score=73.58 Aligned_cols=63 Identities=27% Similarity=0.419 Sum_probs=51.2
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
+.+++.+...+. .+|||++.++... ..+++|..|.++++|++.| |++||+|++|||+.+.+++
T Consensus 20 ~~~~v~v~~~~~-~~lG~~~~~~~~~---~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~ 82 (128)
T 1uf1_A 20 DEKKVNLVLGDG-RSLGLTIRGGAEY---GLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNIL 82 (128)
T ss_dssp SEEEEEEECCSS-CCCCEEEECCTTT---TCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCC
T ss_pred cEEEEEEEECCC-CccCEEEECcccC---CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCC
Confidence 456666665543 6899999986542 2389999999999999998 9999999999999988753
No 150
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.08 E-value=1.1e-10 Score=74.37 Aligned_cols=61 Identities=18% Similarity=0.296 Sum_probs=51.9
Q ss_pred CCcceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 36 ~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
+...+.+.+.|.+.. .+|||.+.+. .+++|..|.++++|++.| |++||+|++|||+.+.++
T Consensus 11 ~~~~~~~~v~l~~~~--~g~G~~~~~~-------~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~ 71 (100)
T 1whd_A 11 PENGEKLQITIRRGK--DGFGFTICCD-------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHW 71 (100)
T ss_dssp CCCCEEEEEEEECCS--SSSSCBCCCS-------SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTC
T ss_pred ccccceEEEEEECCC--CeeeEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence 344567788898876 7999998754 379999999999999998 999999999999998764
No 151
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=99.08 E-value=4.1e-10 Score=74.65 Aligned_cols=48 Identities=27% Similarity=0.551 Sum_probs=43.6
Q ss_pred CcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 53 KGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 53 ~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.+|||++.++.+ .+++|..|.|++||++.| |++||+|++|||+.+.++
T Consensus 39 ~~lG~~l~~~~~-----~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~ 86 (124)
T 3tsv_A 39 DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNI 86 (124)
T ss_dssp SCCCEEEEECTT-----SCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSC
T ss_pred CceeEEEecCCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence 699999998754 389999999999999998 999999999999998875
No 152
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.08 E-value=6.2e-10 Score=70.08 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=42.9
Q ss_pred EEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 43 ~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+.+.+.....+|||++.+| +|..|.++|+|++.| |++||+|++|||+++.+.+
T Consensus 14 ~~~i~~~~~~~~lG~~~~~G----------~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~ 67 (90)
T 1y7n_A 14 TVLIRRPDLRYQLGFSVQNG----------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATP 67 (90)
T ss_dssp EEEEEESSTTSCCCEEEETT----------EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSC
T ss_pred eEEEEeCCCccccCeEecCC----------EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence 33343333337899999642 899999999999998 9999999999999997543
No 153
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.08 E-value=2.7e-10 Score=90.71 Aligned_cols=58 Identities=29% Similarity=0.569 Sum_probs=51.3
Q ss_pred EEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 41 ~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
++.|.|.|+ .+|||++.||.. .||||..|.++|||++.| |++||+|++|||+++.+++
T Consensus 2 ~r~V~l~k~---~~lG~~i~gg~~-----~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t 59 (468)
T 3shw_A 2 MKLVKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNII 59 (468)
T ss_dssp EEEEEEECC---SSCCEEEEEETT-----TEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCC
T ss_pred ceEEEEecC---CccceEEEccCc-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence 456888885 599999999854 389999999999999998 9999999999999998764
No 154
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=8.3e-11 Score=74.48 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=49.4
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
...++|+|.|.+...+|||.+.+ ..+++|..|.++++|+ +.|++||+|++|||+++.++
T Consensus 7 ~~~~~v~l~~~~~~~~~G~~l~~-------~~~~~V~~V~~~spA~--agL~~GD~Il~ing~~v~~~ 65 (96)
T 2edv_A 7 GVRHTVKIDKDTLLQDYGFHISE-------SLPLTVVAVTAGGSAH--GKLFPGDQILQMNNEPAEDL 65 (96)
T ss_dssp CEEEEEEECCCSSSCSCSBCCCS-------SSSCBCCCBCSSSSST--TTSCTTCBEEEESSCBSTTC
T ss_pred CccEEEEEEECCCCCcccEEEec-------CCCeEEEEECCCCchh--hCCCCCCEEEEECCEECCCC
Confidence 45678999988753489999976 2379999999999994 56999999999999998765
No 155
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=99.05 E-value=8.8e-10 Score=68.47 Aligned_cols=58 Identities=26% Similarity=0.281 Sum_probs=47.4
Q ss_pred EEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 41 ~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.++|.+.+......|||.+. .+++|..|.++++|++.|+|++||+|++|||.++.+++
T Consensus 3 ~~~v~~~~~~~~~~~g~~~~---------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~ 60 (92)
T 3cyy_A 3 PTKVTLVKSAKNEEYGLRLA---------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS 60 (92)
T ss_dssp CEEEEEECSSTTSCCCEEEE---------EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCC
T ss_pred cEEEEEEeCCCCCCCCEEEe---------CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCC
Confidence 45566666543368999885 27999999999999999889999999999999988543
No 156
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.05 E-value=6.1e-10 Score=92.06 Aligned_cols=81 Identities=31% Similarity=0.505 Sum_probs=63.8
Q ss_pred cccceEEeecCCCCCcceEEEEEEEeCCCCCcccEEEecCcCCCC--CcccEEEEEeCCCChhcccCCCCCCCeEEEECC
Q psy4600 23 EESQFCTLRRAGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNK 100 (108)
Q Consensus 23 ~~~~~~~~~r~~~~~~~~~~~V~L~K~~~~~glGfsi~GG~~~~~--~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG 100 (108)
....+.++|. .+.....++|+|.|.. .+|||++.++.+... +..|+||+.|.++|+|++.|+|++||+|++|||
T Consensus 139 ~~v~l~v~R~--~~~~~~~~~v~l~k~~--~~lG~~i~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng 214 (721)
T 2xkx_A 139 SIVRLYVMRR--KPPAEKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 214 (721)
T ss_pred cccceEEEec--ccccccceeeeeeeec--CCCceeeccCCCccccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECC
Confidence 3456666555 2333356788898875 689999999876532 346899999999999999999999999999999
Q ss_pred eecccCC
Q psy4600 101 ITTSEYS 107 (108)
Q Consensus 101 ~~l~~~s 107 (108)
+++.+++
T Consensus 215 ~~v~~~~ 221 (721)
T 2xkx_A 215 VGLEDVM 221 (721)
T ss_pred eeCCCCC
Confidence 9998753
No 157
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=99.05 E-value=1.3e-09 Score=67.64 Aligned_cols=58 Identities=26% Similarity=0.329 Sum_probs=46.4
Q ss_pred eEEEEEEEeCCCC-CcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecc
Q psy4600 40 TITTVSFTKGPGF-KGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTS 104 (108)
Q Consensus 40 ~~~~V~L~K~~~~-~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~ 104 (108)
..+.+.+.+.++. .+|||++... ..+++|..|.+++||++.| |++||.|++|||+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~lG~~~~~~------~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~ 61 (90)
T 2eaq_A 3 SDMRISINQTPGKSLDFGFTIKWD------IPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFS 61 (90)
T ss_dssp EEEEEEEECCTTCSSCCSEEEEEE------TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECC
T ss_pred CceEEEEEecCCCCCcccEEEEec------CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEEcc
Confidence 3456777776531 2699998742 1389999999999999998 9999999999999984
No 158
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.04 E-value=4.6e-10 Score=87.29 Aligned_cols=59 Identities=29% Similarity=0.561 Sum_probs=51.3
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
....|.+.|+. +|||++.||.+ .++||..|.++|||++.| |++||+|++|||+++.+++
T Consensus 9 ~~~~v~~~k~~---~lG~~i~gg~~-----~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~ 67 (391)
T 3tsz_A 9 SMKLVKFRKGD---SVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNII 67 (391)
T ss_dssp CEEEEEEECCS---SCCEEEEEETT-----TEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCC
T ss_pred CcEEEEeecCC---ceeEEEEecCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence 56667888763 79999998854 389999999999999999 9999999999999998754
No 159
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=99.03 E-value=7.6e-10 Score=75.95 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=51.5
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+++|.|.|... .+|||++.... .+++|..|.+++||++.| |+.||+|++|||+.+.+.+
T Consensus 4 ~~r~v~l~k~~~-~~lG~~~~~~~------~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~ 63 (166)
T 1w9e_A 4 DPREVILCKDQD-GKIGLRLKSID------NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWS 63 (166)
T ss_dssp CCEEEEEECCTT-SCCSEEEEEET------TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCC
T ss_pred CCEEEEEEeCCC-CcEeEEEEeCC------CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence 467789999764 68999998632 389999999999999998 9999999999999988754
No 160
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.03 E-value=9.6e-11 Score=74.89 Aligned_cols=59 Identities=24% Similarity=0.312 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 41 ~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.++|.+. .. .+|||++.++.+.. .+++|..|.++++|++.| |++||+|++|||+.+.++
T Consensus 6 ~~~v~~~-~~--~~lG~~l~~g~~~~---~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~ 64 (103)
T 1v5l_A 6 SGNVVLP-GP--APWGFRLSGGIDFN---QPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESM 64 (103)
T ss_dssp CBCCEEE-SS--SCCSBCCEEETTTT---EEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSC
T ss_pred EEEEEEc-CC--CCcCEEEeccccCC---CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence 3445554 33 69999999887542 489999999999999988 999999999999998874
No 161
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=99.02 E-value=3.4e-10 Score=81.92 Aligned_cols=62 Identities=21% Similarity=0.427 Sum_probs=53.1
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
...+.|.|.|+. .+|||.+.++.+. .+++|..|.++++|++.| |+.||+|++|||+.+.+++
T Consensus 8 ~~~r~v~l~k~~--~glG~~l~~~~~~----~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s 69 (216)
T 2krg_A 8 LRPRLCTMKKGP--SGYGFNLHSDKSK----PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69 (216)
T ss_dssp CCCEEEEEECCS--SSSCEEECCCSSS----CSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCC
T ss_pred cceEEEEEEeCC--CCceEEEEecCCC----CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence 356778898887 6999999877542 389999999999999999 9999999999999998543
No 162
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.01 E-value=6.1e-10 Score=73.44 Aligned_cols=66 Identities=23% Similarity=0.351 Sum_probs=51.8
Q ss_pred ceEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 39 ~~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.....+.+.|.....+|||++....... ...+++|..|.++++|++.|+|++||+|++|||+.+.+
T Consensus 18 ~~~~~~~~~~~~~~~~lG~~~~~~~~~~-~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~ 83 (124)
T 1wh1_A 18 LELEEVDLYRMNSQDKLGLTVCYRTDDE-DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN 83 (124)
T ss_dssp CEECCBCCCCSSTTCCCCEEEECCCCCS-SCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS
T ss_pred ceEEEEEEEecCCCCcccEEEEecCCCC-CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC
Confidence 3455566666543358999998765432 23489999999999999998899999999999998864
No 163
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.99 E-value=2.4e-10 Score=88.64 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=53.8
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
....|.|.|.++ .+|||+|.+.... ....+++|..|.|+|||++.|+|++||+|++|||+++.+++
T Consensus 204 ~~~~V~i~k~~g-e~lG~~i~~~~~g-~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~ 269 (388)
T 3suz_A 204 NCKELQLEKHKG-EILGVVVVESGWG-SILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLP 269 (388)
T ss_dssp CCEEEEECCCSS-CCCCCCCBCC----CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCC
T ss_pred cceEEEEECCCC-CceeEEEEecCCC-CcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCC
Confidence 456788988865 7999999984321 12336899999999999999999999999999999998764
No 164
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=98.93 E-value=5.5e-09 Score=63.07 Aligned_cols=46 Identities=26% Similarity=0.306 Sum_probs=40.9
Q ss_pred CcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 53 KGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 53 ~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
..|||.+. .+++|..|.++++|++.|+|++||+|++|||+++.+++
T Consensus 13 ~~~g~~~~---------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~ 58 (81)
T 2rcz_A 13 EEYGLRLA---------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS 58 (81)
T ss_dssp CCCCEEEE---------EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCC
T ss_pred CCCCEEEe---------CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCC
Confidence 68999886 26999999999999999889999999999999988543
No 165
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.89 E-value=4.6e-10 Score=73.26 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=47.1
Q ss_pred EEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 42 TTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 42 ~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
++|.|.|+. .+|||++.++ .+++|..|.++++|++.| |+.||+|++|||+.+.++
T Consensus 17 r~v~l~~~~--~~~G~~l~~~-------~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~ 71 (111)
T 1vae_A 17 RGIHFTVEE--GDLGFTLRGN-------TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWL 71 (111)
T ss_dssp CCCCEECCS--SCCSCCEESS-------SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSC
T ss_pred eEEEEEcCC--CcccEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence 457788875 7999999754 268999999999999988 999999999999998743
No 166
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.80 E-value=1.4e-08 Score=71.14 Aligned_cols=65 Identities=17% Similarity=0.120 Sum_probs=51.8
Q ss_pred eEEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 40 ~~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
...++.|.+... ..|||++.+..... ...+++|..|.++++|++.|+|++||+|++|||+++.++
T Consensus 107 ~~~~v~l~~~~~-~~lG~~~~~~~~~~-~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~ 171 (196)
T 1p1d_A 107 GTFHVKLPKKHS-VELGITISSPSSRK-PGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSC 171 (196)
T ss_dssp SCEEEEECCCSS-CCCCCEEECSCSSS-TTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGC
T ss_pred CcEEEEecCCCC-CCcCEEEECCCCCC-CCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCC
Confidence 346677765432 68999998764432 234899999999999999999999999999999998774
No 167
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=98.73 E-value=3.5e-08 Score=63.93 Aligned_cols=53 Identities=17% Similarity=0.114 Sum_probs=43.4
Q ss_pred EEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecc
Q psy4600 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTS 104 (108)
Q Consensus 43 ~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~ 104 (108)
.+.|.+.. .++||.+... ..+.+|..|.+++||++.| |++||+|++|||..+.
T Consensus 20 ~l~l~~~~--~g~G~~l~~~------~~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~ 72 (101)
T 3qik_A 20 RLLILPQE--EDYGFDIEEK------NKAVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVF 72 (101)
T ss_dssp EEEECCCS--SSSSEEEEEE------TTEEEEEEECTTSHHHHHT-CCTTCBEEEETTEEST
T ss_pred eEEEEeCC--CcccEEEEcc------CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcC
Confidence 35555554 7999999752 1268999999999999998 9999999999999874
No 168
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.60 E-value=8.6e-08 Score=63.01 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=39.0
Q ss_pred cccEEEecCcCCCCCcccEEEEEeCC--CChhcccCCCCCCCeEEEECCeecccC
Q psy4600 54 GLGFSIVGGKDSPKGIMGIYVKTIFP--TGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 54 glGfsi~GG~~~~~~~~gi~I~~v~p--gg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.+||.+...........+++|..|.+ +++|++.| |+.||+|++|||+.+.++
T Consensus 28 ~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~ 81 (118)
T 2yub_A 28 RRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTL 81 (118)
T ss_dssp SCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTS
T ss_pred CceEEEEeccccccCCCcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCc
Confidence 45666552211111234899999999 99999988 999999999999988765
No 169
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.32 E-value=1.9e-06 Score=58.78 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=44.7
Q ss_pred EEEEEEEeCCCCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 41 ~~~V~L~K~~~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.++++|.+... ..|||++.. + +|..+.++++|++.| |+.||+|++|||.++.++
T Consensus 89 ~~~v~l~~~~~-~~lG~~~~~---------g-~v~~v~~~s~a~~aG-l~~GD~I~~ing~~v~~~ 142 (166)
T 1w9e_A 89 ERTITMHKDST-GHVGFIFKN---------G-KITSIVKDSSAARNG-LLTEHNICEINGQNVIGL 142 (166)
T ss_dssp CEEEEEECCTT-SCCSEEEET---------T-EEEEECTTSHHHHTT-CCSSEEEEEETTEECTTC
T ss_pred cEEEEEecCCC-CcEeEEEeC---------C-EEEEEccCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence 46677775542 689999871 4 899999999999998 999999999999998764
No 170
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.25 E-value=8.4e-07 Score=63.04 Aligned_cols=49 Identities=16% Similarity=0.024 Sum_probs=36.6
Q ss_pred cccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCC-CeEEEECCeecccC
Q psy4600 54 GLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKED-TDYKISNKITTSEY 106 (108)
Q Consensus 54 glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~G-D~il~VNG~~l~~~ 106 (108)
++|++...+.. ...|++|..|.|++||++.| |+.| |.|++|||..+.+.
T Consensus 3 g~~~~~~~~~~---~~~G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~~v~~~ 52 (209)
T 3rle_A 3 GSSQSVEIPGG---GTEGYHVLRVQENSPGHRAG-LEPFFDFIVSINGSRLNKD 52 (209)
T ss_dssp -----CCCTTS---SSEEEEEEEECTTSHHHHTT-CCTTTEEEEEETTEECCSS
T ss_pred chhhhhhccCC---CCCEEEEEEECCCCHHHHCC-CCcCCeEEEEECCEECcCH
Confidence 44555544433 34589999999999999998 9999 99999999988754
No 171
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.24 E-value=1.3e-07 Score=73.13 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=0.0
Q ss_pred CcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccCC
Q psy4600 53 KGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEYS 107 (108)
Q Consensus 53 ~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~s 107 (108)
.+|||++.+| +|..|.++|+|++.| |++||+|++|||+++.+++
T Consensus 308 ~~lG~~i~~g----------~I~~V~~gs~A~~aG-L~~GD~Il~VNg~~v~~~s 351 (388)
T 3suz_A 308 YQLGFSVQNG----------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATA 351 (388)
T ss_dssp -------------------------------------------------------
T ss_pred CccceEEecC----------EEEEeecCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence 5799988643 899999999999999 9999999999999987654
No 172
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.21 E-value=2e-06 Score=54.38 Aligned_cols=34 Identities=21% Similarity=0.124 Sum_probs=30.8
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.+++|..|.+++||+. | |+.||.|++|||+.+.+
T Consensus 7 ~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~~v~~ 40 (100)
T 3i18_A 7 DGVYVMSVKDDVPAAD-V-LHAGDLITEIDGNAFKS 40 (100)
T ss_dssp CCEEEEEECTTSGGGG-T-CCTTCEEEEETTBCCSS
T ss_pred CCEEEEEeCCCCchHH-C-CCCCCEEEEECCEECCC
Confidence 4899999999999995 5 99999999999998764
No 173
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=98.18 E-value=2.2e-06 Score=55.03 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=32.9
Q ss_pred cccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 69 IMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 69 ~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
..+++|..|.++++|++.| |++||.|++|||+.+.+
T Consensus 34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~ 69 (113)
T 2pzd_A 34 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN 69 (113)
T ss_dssp SSCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECCS
T ss_pred CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCC
Confidence 3589999999999999998 99999999999998864
No 174
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.17 E-value=4.1e-07 Score=57.10 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=30.2
Q ss_pred cEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 71 GIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 71 gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
|++|..|.+++||++ | |++||.|++|||..+.+
T Consensus 2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~~ 34 (91)
T 2kjp_A 2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQS 34 (91)
T ss_dssp CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCSS
T ss_pred ceEEEEECCCChHHH-c-CCCCCEEEEECCEECCC
Confidence 688999999999998 7 99999999999998864
No 175
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.15 E-value=1.1e-06 Score=55.17 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=31.0
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.+++|..|.+++||++ | |++||.|++|||..+.+
T Consensus 5 ~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~~ 38 (94)
T 2kl1_A 5 KGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPINT 38 (94)
T ss_dssp CCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCCC
T ss_pred CcEEEEEECCCChHHh-C-CCCCCEEEEECCEECCC
Confidence 4799999999999998 7 99999999999998764
No 176
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=98.13 E-value=3e-06 Score=54.31 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=32.4
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.+++|..|.++++|++.| |++||.|++|||+.+.+
T Consensus 35 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~ 69 (112)
T 2p3w_A 35 SGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVD 69 (112)
T ss_dssp SSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS
T ss_pred CCeEEEEECCCChHHHCC-CCCCCEEEEECCEECCC
Confidence 589999999999999988 99999999999998864
No 177
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=98.03 E-value=6.7e-06 Score=54.73 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=31.4
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.+++|..|.+++||+ .| |+.||.|++|||..+.+
T Consensus 57 ~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~~v~~ 90 (134)
T 2l97_A 57 SGVIVRSVQSNMPAN-GH-LEKYDVITKVDDKEIAS 90 (134)
T ss_dssp SCEEEEECSTTSGGG-TT-SCSSCEEEEETTEECCC
T ss_pred CCEEEEEECCCCchH-HC-CCCCCEEEEECCEEcCC
Confidence 589999999999999 76 99999999999998865
No 178
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=98.00 E-value=9.3e-06 Score=63.37 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=40.4
Q ss_pred CcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 53 KGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 53 ~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
-|+||++....+.+ ....++|..|.|++||++.| |+.||+|++|||+.+.+.
T Consensus 74 ~G~~~~l~~~~~~~-~~~~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~ 125 (403)
T 3k50_A 74 YGFDYTLYKVLDND-TAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKK 125 (403)
T ss_dssp CSEEEEEEECTTCS-SCEEEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTT
T ss_pred cceEEEEEEcCCCC-cceeEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccch
Confidence 57778776443211 11247999999999999998 999999999999988754
No 179
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=97.97 E-value=3.3e-06 Score=52.04 Aligned_cols=34 Identities=12% Similarity=0.207 Sum_probs=30.1
Q ss_pred cEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 71 GIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 71 gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
+++|..|.++++|++.| |+.||.|++|||..+.+
T Consensus 5 ~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~ 38 (91)
T 2zpm_A 5 EPVLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQ 38 (91)
T ss_dssp -CBCSEECTTSHHHHTT-CCTTCEEEEETTEECCC
T ss_pred CeEEEEECCCChHHhcC-CCCCCEEEEECCeEcCC
Confidence 46789999999999987 99999999999998764
No 180
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=97.96 E-value=1.6e-05 Score=61.21 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=41.1
Q ss_pred CcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 53 KGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 53 ~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.|+|+.+..-. ....+++|..|.+++||++.| |++||+|++|||+++.++
T Consensus 85 ~giG~~~~~~~---~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~ 134 (388)
T 1fc6_A 85 TGVGLEITYDG---GSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGM 134 (388)
T ss_dssp BBCSEEEEECT---TCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTC
T ss_pred EEEEEEEEEee---cCCCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCC
Confidence 57899886421 112379999999999999998 999999999999998775
No 181
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=97.94 E-value=8.7e-06 Score=51.14 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=29.5
Q ss_pred EEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 73 YVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 73 ~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
+|..|.++++|++.| |+.||+|++|||+.+.+
T Consensus 5 ~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~ 36 (95)
T 3id1_A 5 VVGEIAANSIAAEAQ-IAPGTELKAVDGIETPD 36 (95)
T ss_dssp BEEEECTTSHHHHTT-CCTTCEEEEETTEECSS
T ss_pred EEEeeCCCCHHHHcC-CCCCCEEEEECCEECCC
Confidence 688999999999988 99999999999998764
No 182
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=97.93 E-value=5.9e-06 Score=50.89 Aligned_cols=34 Identities=15% Similarity=0.056 Sum_probs=30.6
Q ss_pred cEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 71 GIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 71 gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
++.|..+.|+++|++.| |++||.|++|||..+.+
T Consensus 20 G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~~ 53 (87)
T 2i6v_A 20 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTD 53 (87)
T ss_dssp EEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTC
T ss_pred EEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECCC
Confidence 77888888888999988 99999999999998865
No 183
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=97.91 E-value=1.2e-05 Score=57.03 Aligned_cols=64 Identities=20% Similarity=0.060 Sum_probs=44.8
Q ss_pred eEEEEEEEeCC---CCCcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCC-CCeEEEECCeeccc
Q psy4600 40 TITTVSFTKGP---GFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE-DTDYKISNKITTSE 105 (108)
Q Consensus 40 ~~~~V~L~K~~---~~~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~-GD~il~VNG~~l~~ 105 (108)
...+++|.... ....||+++..-........+++|..|.++++|++.| |+. ||.|++|||. +.+
T Consensus 79 ~~~~v~l~p~~~~~~~~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~ing~-v~~ 146 (209)
T 3rle_A 79 ELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAG-LRPHSDYIIGADTV-MNE 146 (209)
T ss_dssp CEEEEEECCCSSSSSSSSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEESSC-CCS
T ss_pred eEEEEEEcccccccccCccceEEeecChhHccccceEEEEeCCCChHHHCC-CCCCCCEEEECCCE-eCC
Confidence 44556664221 1146899887432221122589999999999999998 999 9999999997 544
No 184
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=97.83 E-value=4e-05 Score=57.36 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=32.8
Q ss_pred cccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 69 IMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 69 ~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
..+++|..|.+++||++.| |+.||.|++|||+.+.+
T Consensus 241 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~ 276 (324)
T 1y8t_A 241 TLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINS 276 (324)
T ss_dssp SSSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECCS
T ss_pred CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCC
Confidence 3589999999999999987 99999999999998865
No 185
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=97.80 E-value=1.9e-05 Score=50.26 Aligned_cols=35 Identities=14% Similarity=0.025 Sum_probs=30.6
Q ss_pred cEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 71 GIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 71 gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
+++|....|+++|++.| |++||.|++|||..+.+.
T Consensus 38 G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~~~ 72 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDP 72 (105)
T ss_dssp EEEEEECSCTHHHHHHT-CCTTCEEEEETTEETTST
T ss_pred EEEEecCCCCCHHHHcC-CCCCCEEEEECCEECCCH
Confidence 67788888888889988 999999999999998764
No 186
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=97.79 E-value=3.6e-05 Score=50.87 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=31.2
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.+++|..|.++++|++. |+.||.|++|||+.+.+
T Consensus 25 ~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~~ 58 (125)
T 2hga_A 25 DGVQIDSVVPGSPASKV--LTPGLVIESINGMPTSN 58 (125)
T ss_dssp CCEEEEEECSSSGGGGT--SCTTCEEEEETTEECSS
T ss_pred CceEEEEECCCChHHHh--cCCCCEEEEECCEEcCC
Confidence 48999999999999986 99999999999998865
No 187
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=97.72 E-value=3.8e-05 Score=62.52 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=38.3
Q ss_pred CcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecc
Q psy4600 53 KGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTS 104 (108)
Q Consensus 53 ~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~ 104 (108)
.+||+.+.... .+++|..|.++|||++.| |++||.|++|||..+.
T Consensus 485 ~~lG~~~~~~~------~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~ 529 (597)
T 4fgm_A 485 VNFGAKYKASP------QGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQAT 529 (597)
T ss_dssp CCCSEEEEEET------TEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC
T ss_pred cccceEEeccC------CeEEEEEeCCCChHHHCC-CCCCCEEEEECCEECC
Confidence 37888876421 279999999999999998 9999999999999874
No 188
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=97.68 E-value=4.7e-05 Score=56.97 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=32.5
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.+++|..|.+++||++.| |++||.|++|||+.+.+
T Consensus 244 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~ 278 (318)
T 1te0_A 244 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAIS 278 (318)
T ss_dssp CCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECCC
T ss_pred CcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcCC
Confidence 589999999999999988 99999999999998864
No 189
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=97.67 E-value=5.9e-05 Score=58.95 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=33.1
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.+++|..|.++++|++.| |+.||+|++|||+.+.++
T Consensus 363 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~ 398 (436)
T 4a8c_A 363 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSI 398 (436)
T ss_pred CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCH
Confidence 489999999999999998 999999999999988653
No 190
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=97.63 E-value=4.2e-05 Score=58.23 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=32.6
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.|++|..|.+++||++.| |+.||.|++|||+.+.+
T Consensus 263 ~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~~ 297 (345)
T 3stj_A 263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNS 297 (345)
T ss_dssp SSEEEEEECTTSHHHHHT-CCTTCEECEETTEECSC
T ss_pred ceEEEEEeccCChHHHcC-CCCCCEEEEECCEECCC
Confidence 589999999999999998 99999999999998864
No 191
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=97.60 E-value=5.8e-05 Score=59.00 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=32.8
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.|++|..|.++++|++.| |+.||+|++|||+.+.+
T Consensus 263 ~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG~~v~~ 297 (436)
T 4a8c_A 263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNS 297 (436)
T ss_pred cceEEEEECCCChHHHCC-CCCCCEEEEECCEECCC
Confidence 589999999999999998 99999999999998865
No 192
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=97.59 E-value=8.1e-05 Score=55.92 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=32.7
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.+++|..|.++++|++.| |+.||.|++|||+.+.+
T Consensus 256 ~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~ 290 (325)
T 1lcy_A 256 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN 290 (325)
T ss_dssp SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS
T ss_pred CCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcCC
Confidence 589999999999999998 99999999999998865
No 193
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=97.55 E-value=7.4e-05 Score=58.77 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=32.9
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.+++|..|.++++|++.| |+.||.|++|||+.+.+
T Consensus 282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG~~v~~ 316 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQ 316 (451)
T ss_dssp CCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS
T ss_pred ceEEEEecCCCChHHHcC-CCCCCEEEEECCEEcCC
Confidence 589999999999999998 99999999999998865
No 194
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=97.52 E-value=6.5e-05 Score=59.11 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=32.8
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.+++|..|.++++|++.| |++||.|++|||+.+.+
T Consensus 386 ~Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng~~v~~ 420 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRAG-IRPGDIIISANKKPVTD 420 (451)
T ss_dssp EEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS
T ss_pred CceEEEEECCCCHHHHcC-CCCCCEEEEECCEECCC
Confidence 589999999999999998 99999999999998865
No 195
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=97.51 E-value=0.00011 Score=55.78 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=33.1
Q ss_pred ccEEEEEeCCCChhcccCCCCC-----------CCeEEEECCeecccC
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKE-----------DTDYKISNKITTSEY 106 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~-----------GD~il~VNG~~l~~~ 106 (108)
.|++|..|.+++||++.| |+. ||.|++|||+.+.+.
T Consensus 251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~~ 297 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSNG 297 (348)
T ss_dssp SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSSS
T ss_pred ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeCCH
Confidence 589999999999999998 998 999999999988754
No 196
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=97.23 E-value=4.6e-05 Score=57.30 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=0.0
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.+++|..|.+++||++.| |+.||.|++|||+.+.+.
T Consensus 254 ~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~ 289 (332)
T 3num_A 254 SGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVVSA 289 (332)
T ss_dssp -------------------------------------
T ss_pred CceEEEEeccCCChHHcC-CCCCCEEEEECCEECCCH
Confidence 479999999999999988 999999999999987643
No 197
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.02 E-value=0.00016 Score=56.87 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=32.8
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.+++|..|.++++|++.| |+.||.|++|||..+.+.
T Consensus 286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~inG~~v~~~ 321 (448)
T 1ky9_A 286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF 321 (448)
T ss_dssp CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSS
T ss_pred CceEEEEeccCCHHHHcC-CCCCCEEEEECCEEcCCH
Confidence 489999999999999987 999999999999988654
No 198
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=96.95 E-value=0.0014 Score=54.91 Aligned_cols=47 Identities=6% Similarity=-0.132 Sum_probs=38.9
Q ss_pred CcccEEEecCcCCCCCcccEEEEEeCCC--------ChhcccC-CCCCCCeEEEECCeecccC
Q psy4600 53 KGLGFSIVGGKDSPKGIMGIYVKTIFPT--------GQAADTG-SLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 53 ~glGfsi~GG~~~~~~~~gi~I~~v~pg--------g~A~~~G-~L~~GD~il~VNG~~l~~~ 106 (108)
.++|+.+.-- +.+++|..|.++ +||++.| .|+ ||+|++|||+++.++
T Consensus 737 ~g~G~~~~~~------~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~ 792 (1045)
T 1k32_A 737 GRIACDFKLD------GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAG 792 (1045)
T ss_dssp CBCSEEEEEE------TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTT
T ss_pred ceecEEEEEe------CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccch
Confidence 5889887531 137999999998 9999988 499 999999999998765
No 199
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=96.80 E-value=0.00019 Score=56.36 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=0.0
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
.+++|..|.++++|++.| |+.||.|++|||+.+.++
T Consensus 383 ~gv~V~~V~~gspA~~aG-L~~GDiI~~vng~~v~~~ 418 (448)
T 1ky9_A 383 QGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKNI 418 (448)
T ss_dssp -------------------------------------
T ss_pred CeEEEEEecCCCHHHHcC-CCCCCEEEEECCEECCCH
Confidence 479999999999999998 999999999999987653
No 200
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=96.62 E-value=0.0027 Score=51.29 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=30.7
Q ss_pred ccEEEEEeCCCChhcccCCCCCCCeEEEECCeeccc
Q psy4600 70 MGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 70 ~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
.|++|..|.|++||++ + |+.||.|++|||+.+..
T Consensus 277 ~Gv~V~~V~~~spA~~-a-l~~GDvI~~idg~~V~~ 310 (539)
T 4fln_A 277 EGVLVRRVEPTSDASK-V-LKEGDVIVSFDDLHVGC 310 (539)
T ss_dssp BCEEEEEECTTSGGGG-T-CCTTCEEEEETTEECBS
T ss_pred CceeeecccCCChHHh-C-ccCCCEEEEECCEEeCc
Confidence 5999999999999986 4 99999999999998753
No 201
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=95.44 E-value=0.014 Score=47.06 Aligned_cols=38 Identities=8% Similarity=-0.004 Sum_probs=33.8
Q ss_pred CcccEEEEEeCCCChhcccCCCCCCCeEEEECCeecccC
Q psy4600 68 GIMGIYVKTIFPTGQAADTGSLKEDTDYKISNKITTSEY 106 (108)
Q Consensus 68 ~~~gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~~~ 106 (108)
+..++.|+.|.|+++|+..| ++.||.|++|||+.+.++
T Consensus 413 ~~~gVvvs~V~~~s~a~~~g-~~~gdiI~~vNg~~V~s~ 450 (539)
T 4fln_A 413 GEQIVILSQVLANEVNIGYE-DMNNQQVLKFNGIPIRNI 450 (539)
T ss_dssp TCCCEEEEEECCCGGGTTCS-SCCSEEEEEETTEECCSH
T ss_pred CceEEEEEEecCCchhhhcC-CCCCCEEEeECCEEcCCH
Confidence 34589999999999999887 899999999999998764
No 202
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=65.09 E-value=6.7 Score=31.99 Aligned_cols=29 Identities=7% Similarity=0.137 Sum_probs=21.6
Q ss_pred cEEEEEeCCCChhcccCCCCCCCeEEEECCeecc
Q psy4600 71 GIYVKTIFPTGQAADTGSLKEDTDYKISNKITTS 104 (108)
Q Consensus 71 gi~I~~v~pgg~A~~~G~L~~GD~il~VNG~~l~ 104 (108)
.+||..+..... .+.+||+|++|||+++.
T Consensus 97 ~i~V~dv~~~~s-----~I~vGdEIlsING~pv~ 125 (583)
T 3dor_A 97 RFYFVDIMTFSS-----EIRVGDELLEVDGAPVQ 125 (583)
T ss_dssp CEEEEEECSSCC-----SSCTTCEEEEETTEEHH
T ss_pred cEEEEecccccc-----CCCCCCEEEEECCccHH
Confidence 488877632222 49999999999999875
No 203
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=44.79 E-value=8.8 Score=24.07 Aligned_cols=19 Identities=21% Similarity=0.027 Sum_probs=14.4
Q ss_pred CCCChhcccCCCCCCCeEEEE
Q psy4600 78 FPTGQAADTGSLKEDTDYKIS 98 (108)
Q Consensus 78 ~pgg~A~~~G~L~~GD~il~V 98 (108)
+-+|+|++ ..++||.|+-+
T Consensus 46 ~lNGAAAr--l~~~GD~vII~ 64 (96)
T 1vc3_B 46 GINGAAAH--LVKPGDLVILV 64 (96)
T ss_dssp EEEGGGGG--TCCTTCEEEEE
T ss_pred EEchHHHc--cCCCCCEEEEE
Confidence 45688887 57899999754
No 204
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=42.25 E-value=8.7 Score=24.14 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=14.8
Q ss_pred eCCCChhcccCCCCCCCeEEEE
Q psy4600 77 IFPTGQAADTGSLKEDTDYKIS 98 (108)
Q Consensus 77 v~pgg~A~~~G~L~~GD~il~V 98 (108)
|+-+|+|++ ..++||.|+-+
T Consensus 43 I~lNGAAAr--l~~~GD~vII~ 62 (97)
T 1uhe_A 43 ICVNGAAAR--KVAIGDVVIIL 62 (97)
T ss_dssp EEEEGGGGG--GCCTTCEEEEE
T ss_pred EEEchHHHc--cCCCCCEEEEE
Confidence 356688887 46899999754
No 205
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=40.47 E-value=5.1 Score=27.81 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=21.1
Q ss_pred CCCChhcccCCCCCCCeEEEECCeecccCCC
Q psy4600 78 FPTGQAADTGSLKEDTDYKISNKITTSEYSP 108 (108)
Q Consensus 78 ~pgg~A~~~G~L~~GD~il~VNG~~l~~~s~ 108 (108)
.++-+|+..|.|.+||-|++ ++.++|
T Consensus 57 ~~g~aad~tg~l~vgDAI~~-----~re~tp 82 (178)
T 2adz_A 57 LNGAAEPGAAPPQLPEALLL-----QREVSP 82 (178)
T ss_dssp CCCCCCSCCSSCCCCSSTTT-----STTTSS
T ss_pred CCCCcccccCCCCcchHHHH-----HhhccH
Confidence 56778899999999999987 566554
No 206
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=37.05 E-value=25 Score=23.51 Aligned_cols=20 Identities=25% Similarity=0.116 Sum_probs=15.4
Q ss_pred eCCCChhcccCCCCCCCeEEEE
Q psy4600 77 IFPTGQAADTGSLKEDTDYKIS 98 (108)
Q Consensus 77 v~pgg~A~~~G~L~~GD~il~V 98 (108)
|+-+|+|++ ..++||.|+-+
T Consensus 86 I~lNGAAAr--l~~~GD~VII~ 105 (143)
T 1pqh_A 86 ISVNGAAAH--CASVGDIVIIA 105 (143)
T ss_dssp EECCGGGGG--TCCTTCEEEEE
T ss_pred EEechHHHc--cCCCCCEEEEE
Confidence 467789987 57899999754
No 207
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=36.33 E-value=26 Score=24.96 Aligned_cols=22 Identities=9% Similarity=0.142 Sum_probs=19.0
Q ss_pred hcccCCCCCCCeEEEECCeeccc
Q psy4600 83 AADTGSLKEDTDYKISNKITTSE 105 (108)
Q Consensus 83 A~~~G~L~~GD~il~VNG~~l~~ 105 (108)
+.++| +.+|..++++||.++.+
T Consensus 52 ~~~d~-~~~~~~~~~~ng~~~~~ 73 (219)
T 2j3t_D 52 GQRDG-IRVGHAVLAINGMDVNG 73 (219)
T ss_dssp CCCTT-CCTTCEEEEETTEECBT
T ss_pred cccCC-ccccceeeecCCccCCC
Confidence 55677 89999999999999876
No 208
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=36.20 E-value=16 Score=23.18 Aligned_cols=20 Identities=20% Similarity=0.125 Sum_probs=14.8
Q ss_pred eCCCChhcccCCCCCCCeEEEE
Q psy4600 77 IFPTGQAADTGSLKEDTDYKIS 98 (108)
Q Consensus 77 v~pgg~A~~~G~L~~GD~il~V 98 (108)
|+-+|+|++ ..++||+|+-+
T Consensus 44 I~lNGAAAr--l~~~GD~vII~ 63 (102)
T 3plx_B 44 VCLNGAAAR--LAEVGDKVIIM 63 (102)
T ss_dssp EEEEGGGGG--GCCTTCEEEEE
T ss_pred EEeCcHHHh--ccCCCCEEEEE
Confidence 355688887 46899998754
No 209
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=30.75 E-value=21 Score=22.96 Aligned_cols=19 Identities=21% Similarity=0.064 Sum_probs=14.2
Q ss_pred CCCChhcccCCCCCCCeEEEE
Q psy4600 78 FPTGQAADTGSLKEDTDYKIS 98 (108)
Q Consensus 78 ~pgg~A~~~G~L~~GD~il~V 98 (108)
+-+|+|++ ..++||+|+-+
T Consensus 73 ~lNGAAAr--~~~~GD~vII~ 91 (114)
T 3oug_A 73 ALNGPAAR--RCEIGDQLFII 91 (114)
T ss_dssp EEEGGGGG--GCCTTCEEEEE
T ss_pred EeCCHHHh--ccCCCCEEEEE
Confidence 45688887 46899999754
No 210
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=27.03 E-value=28 Score=23.20 Aligned_cols=19 Identities=16% Similarity=-0.032 Sum_probs=14.2
Q ss_pred CCCChhcccCCCCCCCeEEEE
Q psy4600 78 FPTGQAADTGSLKEDTDYKIS 98 (108)
Q Consensus 78 ~pgg~A~~~G~L~~GD~il~V 98 (108)
+-+|+|++ ..++||+|+-+
T Consensus 70 ~lNGAAAr--l~~~GD~vII~ 88 (139)
T 2c45_A 70 GINGAAAH--LVHPGDLVILI 88 (139)
T ss_dssp EEESSTTT--TSCTTCEEEEE
T ss_pred EEchHHHc--cCCCCCEEEEE
Confidence 45678876 57899999754
No 211
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=24.65 E-value=42 Score=21.87 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=17.6
Q ss_pred cEEEEEeCCCChhcccCCCCCCCeEE
Q psy4600 71 GIYVKTIFPTGQAADTGSLKEDTDYK 96 (108)
Q Consensus 71 gi~I~~v~pgg~A~~~G~L~~GD~il 96 (108)
.-||-.+. .|.+++.| |++||+|.
T Consensus 102 a~~VLEl~-aG~~~~~g-i~~Gd~v~ 125 (136)
T 3pjy_A 102 VAYVLELN-AGTVKRLG-VSPGDRLE 125 (136)
T ss_dssp EEEEEEEE-TTHHHHHT-CCTTCEEE
T ss_pred eeEEEEeC-cChHHhcC-CCCCCEEE
Confidence 45888884 45566666 99999985
No 212
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=22.72 E-value=1.1e+02 Score=19.69 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=22.3
Q ss_pred CcccEEEecCcCCCCCcccEEEEEeCCCChhcccCCCCCCCeEE
Q psy4600 53 KGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKEDTDYK 96 (108)
Q Consensus 53 ~glGfsi~GG~~~~~~~~gi~I~~v~pgg~A~~~G~L~~GD~il 96 (108)
+|+||-...+...-.+..-|||+. +...+- .|+.||.|.
T Consensus 60 dG~GFlr~~~~~y~~~~~DiyVs~----~~irrf-~lr~GD~V~ 98 (130)
T 1a62_A 60 DGFGFLRSADSSYLAGPDDIYVSP----SQIRRF-NLRTGDTIS 98 (130)
T ss_dssp TSCEEEECGGGTTCCCTTCEEECH----HHHHHT-TCCTTCEEE
T ss_pred CCeEEEecCCcCCCCCCCCEEECH----HHHhHh-CCCCCCEEE
Confidence 699998876422222334689863 223322 378888663
No 213
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=21.46 E-value=53 Score=21.56 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=15.8
Q ss_pred EEEEEeCCCChhcccCCCCCCCeEE
Q psy4600 72 IYVKTIFPTGQAADTGSLKEDTDYK 96 (108)
Q Consensus 72 i~I~~v~pgg~A~~~G~L~~GD~il 96 (108)
-||-.+. .|.+++.| |++||+|.
T Consensus 117 ~~VLEl~-aG~~~~~g-i~~Gd~v~ 139 (140)
T 3m7a_A 117 LAVLEIN-GGLAARLG-IKPGDKVE 139 (140)
T ss_dssp SEEEEEE-TTHHHHHT-CCTTCEEE
T ss_pred cEEEEeC-cChHHHcC-CCCCCEEe
Confidence 4777774 44555556 99999874
Done!