RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4600
(108 letters)
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 74.7 bits (184), Expect = 5e-19
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+ TV KGP LG SI GG SP G + I++ + PTG AA T L+
Sbjct: 25 LRTVEMKKGPT-DSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRV 74
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 73.2 bits (180), Expect = 2e-18
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
V+ K PG + LG ++ GG + + IYV ++ P G + G +K
Sbjct: 25 EKVVNIQKDPG-ESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKT 74
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 72.4 bits (178), Expect = 3e-18
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+ K P GLGFS+VG + +G +GI+V+ I A G LKE
Sbjct: 21 VEVFELLKPPS-GGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKE 70
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 72.4 bits (178), Expect = 4e-18
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+++ +GP GLGFSIVGG SP G + IYVKT+F G A++ G LK
Sbjct: 26 CKSITLERGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKR 74
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 71.3 bits (175), Expect = 1e-17
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+ KG +GLGFSI + G IYVK I P G A G LK
Sbjct: 31 RLNIQLKKGT--EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKA 79
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural
genomics, alternative splicing, cell cycle, cell
division, cell junction, coiled coil; NMR {Mus
musculus} PDB: 2ogp_A
Length = 111
Score = 70.8 bits (174), Expect = 1e-17
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+ KG +GLGFSI + G IYVK I P G A G LK
Sbjct: 12 RLNIQLKKGT--EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKA 60
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 69.9 bits (172), Expect = 2e-17
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
I V K LG S+ GG ++ GIYVK + P G A G + +
Sbjct: 6 IFEVELAKNDN--SLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHK 54
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight
junctions, PATJ, structural genomics; NMR {Homo
sapiens}
Length = 128
Score = 70.6 bits (173), Expect = 3e-17
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
I + + GLGFS+V + G + I+VK + P A LKE
Sbjct: 26 IEYIDIERPST-GGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKE 75
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 69.2 bits (170), Expect = 3e-17
Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSP--KGIMGIYVKTIFPTGQAADTGSLKE 91
S TI V+ KGP KGLGFSI GG + G IY+ I G A G L+
Sbjct: 1 SMTIMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQI 54
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA,
structural genomics, riken structural
genomics/proteomics initiative, unknown function; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 110
Score = 68.9 bits (169), Expect = 7e-17
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+S + TV +GP GLG ++ G + G G+Y++T+ P AA G L
Sbjct: 4 GSSGYVFTVELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSL 57
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 68.7 bits (168), Expect = 2e-16
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 28 CTLRRAGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
+ +A T+ TV+ K GLGFS+ GGK S G + + IF + +
Sbjct: 17 ASDVSVESTAEATVCTVTLEKMSA--GLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSE 74
Query: 88 SLK 90
+++
Sbjct: 75 TVQ 77
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 67.7 bits (166), Expect = 2e-16
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSP--KGIMGIYVKTIFPTGQAADTGSLKE 91
T ++ T+GP GLGF+IVGG D GIYV I G AA G L+E
Sbjct: 5 LVTEEEINLTRGPS--GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQE 58
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 67.4 bits (165), Expect = 3e-16
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKE 91
S T+ + KGP KGLGFSI GG + G IYV I G A G L+
Sbjct: 22 SMTVVEIKLFKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQV 75
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 66.6 bits (163), Expect = 5e-16
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
I TV+ K G+G SIV K + + +GIYVK++ G A G L
Sbjct: 12 IITVTLKKQ---NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAA 59
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal
transduction, structural genom structural genomics
consortium, SGC, signaling protein; 1.85A {Homo
sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A
1iu0_A 1iu2_A
Length = 102
Score = 65.8 bits (161), Expect = 8e-16
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 37 ASFTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKE 91
+ F + +G GLGFSI GG D+P GI++ I P G AA G L
Sbjct: 1 SMFKYEEIVLERGNS--GLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGV 55
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 66.2 bits (162), Expect = 9e-16
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSP--KGIMGIYVKTIFPTGQAADTGSLKE 91
I + KGP KGLGFSI GG + G IYV I G A G L+
Sbjct: 4 IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQI 54
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 65.9 bits (161), Expect = 2e-15
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 33 AGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSP--KGIMGIYVKTIFPTGQAADTGSLK 90
T ++ T+GP GLGF+IVGG D GIYV I G AA G L+
Sbjct: 10 GRVDYLVTEEEINLTRGPS--GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQ 67
Query: 91 E 91
E
Sbjct: 68 E 68
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A*
1mc7_A
Length = 108
Score = 65.1 bits (159), Expect = 2e-15
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 37 ASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+ I TV+ LG SIVG + G GIY+ +I G A G ++
Sbjct: 2 SHMNIITVTLNMEKY-NFLGISIVGQSNER-GDGGIYIGSIMKGGAVAADGRIEP 54
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 64.7 bits (158), Expect = 3e-15
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKG------IMGIYVKTIFPTGQAADTGSL 89
S+ + + K PG + LG SI GG G GI++ + PTG A G L
Sbjct: 5 SSGPGLRELCIQKAPG-ERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRL 63
Query: 90 KE 91
+
Sbjct: 64 RV 65
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 64.7 bits (158), Expect = 4e-15
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGI--MGIYVKTIFPTGQAADTGSLKE 91
++ F++ +V + LG SI G +D GIYVK++ P AA G ++
Sbjct: 8 ASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEP 65
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 64.4 bits (157), Expect = 7e-15
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+ S + G LG +VGGK + G + ++ + A G L+
Sbjct: 37 LKDGSVPRDSG-AMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRP 86
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural
genomics, PDZ domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Length = 127
Score = 63.7 bits (155), Expect = 1e-14
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 35 KSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGI-MGIYVKTIFPTGQAADTGSLKE 91
+S+ + GLG S+ G K G +GI++K+I G A G L+
Sbjct: 20 ESSEQLTLEIPLNDSGS-AGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRM 76
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 62.7 bits (153), Expect = 2e-14
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
TT+ +KG GLG SIVGG D+ G I + ++ G A G L
Sbjct: 5 ETTIEISKGRT--GLGLSIVGGSDTLLG--AIIIHEVYEEGAACKDGRLW 50
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 62.3 bits (152), Expect = 3e-14
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+V +G G G ++ GG+D G + V+ + G A G L+
Sbjct: 14 SVELVRGYA--GFGLTLGGGRDVA-GDTPLAVRGLLKDGPAQRCGRLEV 59
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 62.1 bits (151), Expect = 4e-14
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 40 TITTVSFTKGPGFKGLGFSIVGGKDSP--KGIMGIYVKTIFPTGQAADTGSLKE 91
IT S GLG IVGGK+ P G +G Y+ I P G A TG L E
Sbjct: 17 KITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLME 70
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 61.6 bits (150), Expect = 5e-14
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSP-KGIMGIYVKTIFPTGQAADTGSLKE 91
+ V K KGLGFSI+ +D I ++++ G A +G L
Sbjct: 16 VKIVELVKDC--KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLP 65
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 105
Score = 61.6 bits (150), Expect = 5e-14
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 34 GKSASFTITTVSFTKGPGFKGLGFSIVGGKDSP---KGIMGIYVKTIFPTGQAADTGSLK 90
G S S + GLGFSI GGK S G GI+V I G A G+L+
Sbjct: 1 GSSGSSGRHVACLARSER--GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQ 58
Query: 91 E 91
Sbjct: 59 V 59
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 61.2 bits (149), Expect = 6e-14
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 34 GKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
F TV KG G GFSI GG++ M +YV + G A G ++
Sbjct: 5 SSGQDFDYFTVDMEKGAK--GFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMRV 57
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 61.3 bits (149), Expect = 9e-14
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 30 LRRAGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSL 89
+R+ + + K GLG S+ G KD + M I+V I P G AA G +
Sbjct: 15 IRQRYADLPGELHIIELEKDKN--GLGLSLAGNKDRSR--MSIFVVGINPEGPAAADGRM 70
Query: 90 K 90
+
Sbjct: 71 R 71
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 60.8 bits (148), Expect = 1e-13
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 36 SASFTITTVSFTKGPGFKGLGFSIVG---GKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
S+ + V K GLG SI+G G D+ +GI+VKT+ G A G ++
Sbjct: 5 SSGLELFPVELEKDE--DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQV 61
>2i04_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; PDZ, E6 binding, tumor
suppressor, peptide binding protein; 2.15A {Mus
musculus}
Length = 85
Score = 60.0 bits (146), Expect = 1e-13
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
K +G GF++VGG + + +K++ G AA G ++
Sbjct: 3 HTKLRKSS--RGFGFTVVGGDEPD---EFLQIKSLVLDGPAALDGKMET 46
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 60.5 bits (147), Expect = 2e-13
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDS-----PKGIMGIYVKTIFPTGQAADTGSLKE 91
T+ + G LGF+I+GG+ S GI+V I +G AA G L+
Sbjct: 9 SLTLVLHRDSG--SLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQI 62
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 60.6 bits (147), Expect = 2e-13
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
K +G GF++VGG + + +K++ G AA G ++
Sbjct: 18 KFIHTKLRKSS--RGFGFTVVGGDEPD---EFLQIKSLVLDGPAALDGKMET 64
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 60.5 bits (147), Expect = 2e-13
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 30 LRRAGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSL 89
R T + + K G GF+I+GG + + VK++ P G AA G +
Sbjct: 9 FTRDASQLKGTFLSTTLKKSN--MGFGFTIIGGDEPD---EFLQVKSVIPDGPAAQDGKM 63
Query: 90 KE 91
+
Sbjct: 64 ET 65
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 59.6 bits (145), Expect = 2e-13
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
T+ K PG KGLG SIVG ++ G++V I G A G L +
Sbjct: 5 TLTIGLQKKPG-KGLGLSIVGKRNDT----GVFVSDIVKGGIADADGRLMQ 50
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 60.5 bits (147), Expect = 2e-13
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDS------PKGIMGIYVKTIFPTGQAADTGSLK 90
V + P K LG SIVGG+ + + GI++K + A G+LK
Sbjct: 27 RVELWREPS-KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLK 79
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 59.6 bits (145), Expect = 2e-13
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
S+ + V + G GF I+GG + I + + G A G L
Sbjct: 5 SSGYKELDVHLRRMES--GFGFRILGGDEPG---QPILIGAVIAMGSADRDGRLHP 55
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; transferase, STRU genomics, structural
genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A
{Homo sapiens}
Length = 112
Score = 59.7 bits (145), Expect = 3e-13
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
TV +G G GFS+ GG++ M +YV + G A +G ++
Sbjct: 25 FYTVELERGAK--GFGFSLRGGREYN---MDLYVLRLAEDGPAERSGKMR 69
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens}
PDB: 2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 59.3 bits (144), Expect = 3e-13
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 34 GKSASFTITTVSFTKGPGFKGLGFSIVGGKDSP---KGIMGIYVKTIFPTGQAADTGSLK 90
G + TV+ + PG G G +I GG+D+P G I + + G A+ G L+
Sbjct: 1 GSHMIWEQHTVTLHRAPG-FGFGIAISGGRDNPHFQSGETSIVISDVLKGG-PAE-GQLQ 57
Query: 91 E 91
E
Sbjct: 58 E 58
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 58.8 bits (143), Expect = 3e-13
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
+ + G GF I+GG + IY+ I P G A G L+
Sbjct: 2 MEQDIFLWRKET--GFGFRILGGNEPG---EPIYIGHIVPLGAADTDGRLR 47
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1,
HOST-virus interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 59.2 bits (144), Expect = 4e-13
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPK-GIMGIYVKTIFPTGQAADTGSLK 90
V TK +GLG +I G K GI+VK+I + G ++
Sbjct: 5 TFDVELTKNV--QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQ 53
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 59.7 bits (145), Expect = 4e-13
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
+ +KG GLG SIVGGKD+P I + ++ G AA G L
Sbjct: 18 EMIIEISKGR--SGLGLSIVGGKDTPLN--AIVIHEVYEEGAAARDGRLW 63
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus
musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 58.8 bits (143), Expect = 4e-13
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 37 ASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
S V+ K GLG SI GG+++ M I + IF A T +L
Sbjct: 1 GSLQRRRVTVRKADA-GGLGISIKGGRENK---MPILISKIFKGLAADQTEALFV 51
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 58.8 bits (143), Expect = 4e-13
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
S I V+ K + LG +V D P G+++ + G AA G L
Sbjct: 1 SMEILQVALHKRDSGEQLGIKLVRRTDEP----GVFILDLLEGGLAAQDGRLSS 50
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 58.9 bits (143), Expect = 4e-13
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKD------SPKGIMGIYVKTIFPTGQAADTGSLK 90
V + P K LG SIVGG+ + + + GI++K + A G+LK
Sbjct: 7 RVELWREPS-KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLK 59
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 58.8 bits (143), Expect = 5e-13
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPKG-IMGIYVKTIFPTGQAADTGSLK 90
S V+ K GF I GG + + + ++ P G A G++K
Sbjct: 1 SMRTVEVTLHKEGN--TFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIK 52
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 58.9 bits (143), Expect = 5e-13
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSP---KGIMGIYVKTIFPTGQAADTGSLK 90
I V+ K K G IV G+ GI++K I P A G LK
Sbjct: 6 IHMVTLDKTGK-KSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLK 57
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 59.0 bits (143), Expect = 9e-13
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPK--GIMGIYVKTIFPTGQAADTGSLKE 91
S+ F V + G + LG IVG + GIYVK++ P A G ++
Sbjct: 11 SSLFETYNVELVRKDG-QSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQV 67
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 58.6 bits (142), Expect = 1e-12
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
I K G GLGFS+ GG D I V +FP G A+ G++++
Sbjct: 16 IHVTILHKEEG-AGLGFSLAGGADLEN--KVITVHRVFPNGLASQEGTIQK 63
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 58.1 bits (141), Expect = 1e-12
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 41 ITTVSFTKGPGFKGLGFSIV-----GGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
I V K LG S+ GG ++ GIYVK + P G A G + +
Sbjct: 10 IFEVELAKNDN--SLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHK 63
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 57.4 bits (139), Expect = 2e-12
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 33 AGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+S + VS + +GLGFSI GG + +GIYV + P G A+ L+
Sbjct: 1 GSSGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHG---VGIYVSLVEP-GSLAEKEGLRV 55
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 57.1 bits (138), Expect = 3e-12
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
V GLG I+GG + +G +Y+ + P G G LK
Sbjct: 15 AFRVITVTKE--TGLGLKILGGINRNEG-PLVYIHEVIPGGDCYKDGRLKP 62
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 57.1 bits (138), Expect = 3e-12
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
S V+ K +G SI GG +Y+ +F AA G++
Sbjct: 22 SMVPGKVTLQKDAQ-NLIGISIGGGAQYC---PCLYIVQVFDNTPAALDGTVAA 71
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 58.6 bits (142), Expect = 4e-12
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSP--KGIMGIYVKTIFPTGQAADTGSLK 90
S S ++ +G GLGFSI GG D+P I++ I P G AA G L+
Sbjct: 1 SGSMEYEEITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLR 55
Score = 50.1 bits (120), Expect = 6e-09
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 10/72 (13%)
Query: 30 LRRAGKSASFTI--------TTVSFTKGPGFKGLGFSIVGGKDSP--KGIMGIYVKTIFP 79
L+ AG + + G KGLGFSI GG + G IYV I
Sbjct: 80 LKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIE 139
Query: 80 TGQAADTGSLKE 91
G A G L+
Sbjct: 140 GGAAHKDGRLQI 151
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 57.1 bits (138), Expect = 4e-12
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSP---KGIMGIYVKTIFPTGQAADTGSLKE 91
+ TV+ K +G G ++ GG+D+P G I + + P G AD G L+E
Sbjct: 10 EVIWEQYTVTLQKDSK-RGFGIAVSGGRDNPHFENGETSIVISDVLPGG-PAD-GLLQE 65
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 57.2 bits (138), Expect = 4e-12
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+ V + LG ++ D +GIY+ I P AA G ++E
Sbjct: 15 REELELEEVDLYRMNSQDKLGLTVCYRTDDE-DDIGIYISEIDPNSIAAKDGRIRE 69
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 93
Score = 56.1 bits (136), Expect = 4e-12
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
V K GLGF+I+GGK+ IY+ + P G A G LK
Sbjct: 6 SGVVELPKTDE--GLGFNIMGGKEQN---SPIYISRVIPGGVADRHGGLK 50
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 56.7 bits (137), Expect = 5e-12
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
V + L ++ GG DSP G + V ++ G A G + +
Sbjct: 18 DVRLLRIKKEGSLDLALEGGVDSPVG--KVVVSAVYEGGAAERHGGVVK 64
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 58.0 bits (140), Expect = 7e-12
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
+ +G + GGK++ G + ++P GQ A LK
Sbjct: 19 KILIELKVEKK--PMGVIVCGGKNNHVT-TGCVITHVYPEGQVAADKRLK 65
Score = 39.5 bits (92), Expect = 4e-05
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 7/48 (14%)
Query: 44 VSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
V K G K LG S+ + +G + + L+
Sbjct: 117 VDLMKKAG-KELGLSLSPNE------IGCTIADLIQGQYPEIDSKLQR 157
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 56.2 bits (136), Expect = 7e-12
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGK---DSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+ V K +GLG SI+G D +GI+VKT+ G A G ++
Sbjct: 5 LFPVELEKDS--EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQV 56
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 56.2 bits (136), Expect = 8e-12
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
+ V GLGF IVGGK S G+ V+TI P G A G L+
Sbjct: 16 VEEVELINDG--SGLGFGIVGGKTS-----GVVVRTIVPGGLADRDGRLQ 58
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens}
Length = 97
Score = 55.8 bits (135), Expect = 8e-12
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSP---KGIMGIYVKTIFPTGQAADTG 87
S T++ + G GLG SI GGK S GI++ + G AA G
Sbjct: 1 SMEELTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG 51
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 55.9 bits (135), Expect = 1e-11
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGI------MGIYVKTIFPTGQAADTGSLK 90
V + P LG SIVGG+ K + GI++K + A T +LK
Sbjct: 18 IVEIFREPN-VSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALK 70
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 55.5 bits (134), Expect = 1e-11
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
I V K +GLG SI GGK+ + I + I P A G L
Sbjct: 28 IRKVLLLKEDH-EGLGISITGGKEHG---VPILISEIHPGQPADRCGGLHV 74
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 55.5 bits (134), Expect = 1e-11
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 33 AGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKG----IMGIYVKTIFPTGQAADTGS 88
+G S S + V + +G GF I+ + P+ + + I A
Sbjct: 3 SGSSGSLQTSDVVIHRKEN-EGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK 61
Query: 89 LK 90
LK
Sbjct: 62 LK 63
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 113
Score = 54.7 bits (132), Expect = 3e-11
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+ KG GLGF+IVGG+D GI+V I G A +G L+
Sbjct: 16 PRKIILHKGST--GLGFNIVGGEDG----EGIFVSFILAGGPADLSGELRR 60
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 54.3 bits (131), Expect = 3e-11
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
V+ K PG LGF+I GGK S +GI++ + P A G
Sbjct: 18 IVTLKKPPG-AQLGFNIRGGKASQ---LGIFISKVIPDSDAHRAG 58
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 55.7 bits (134), Expect = 3e-11
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 9 ENEDQEQE-EDEDEEEESQFCTLRRAGKSASFTITTVSFTKGPGFKGLGFSIVGGK---D 64
NED ++ ED D S L + + + V K +GLG SI+G D
Sbjct: 50 SNEDYDRRNEDVDPMAASAEYELEK--RVERLELFPVELEKDS--EGLGISIIGMGAGAD 105
Query: 65 SPKGIMGIYVKTIFPTGQAADTGSLK 90
+GI+VKT+ G A G ++
Sbjct: 106 MGLEKLGIFVKTVTEGGAAHRDGRIQ 131
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 54.3 bits (131), Expect = 3e-11
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSP---KGIMGIYVKTIFPTGQAADTG 87
T++ + G GLG SI GGK S GI++ + G AA G
Sbjct: 16 ELTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG 63
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 54.8 bits (132), Expect = 3e-11
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
V+ K +G SI GG +Y+ +F AA G++
Sbjct: 19 VPGKVTLQKDAQ-NLIGISIGGGAQYC---PCLYIVQVFDNTPAALDGTVA 65
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex,
peptide binding protein; 1.54A {Rattus norvegicus}
SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 54.4 bits (131), Expect = 4e-11
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
+ +G GLGF+IVGG+D GI++ I G A +G L+
Sbjct: 15 PRRIVIHRGST--GLGFNIVGGEDG----EGIFISFILAGGPADLSGELR 58
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain,
scaffolding protein, membrane, sensory transduction,
vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A
2qku_A
Length = 96
Score = 53.9 bits (130), Expect = 4e-11
Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 7/54 (12%)
Query: 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
S V K G K LG S+ + G + + L+
Sbjct: 6 SLEKFNVDLMKKAG-KELGLSLSPNEI------GCTIADLIQGQYPEIDSKLQR 52
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1qav_B
Length = 112
Score = 54.0 bits (130), Expect = 5e-11
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
+ +V K GLGF + P + + + G A +G ++
Sbjct: 2 VISVRLFKRKV-GGLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQ 46
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 53.5 bits (129), Expect = 8e-11
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
+ +G GLGF+IVGG+ GI++ I G A +G L+
Sbjct: 12 PRRIVIHRGST--GLGFNIVGGEXG----EGIFISFILAGGPADLSGELR 55
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide;
peptide binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 53.2 bits (128), Expect = 8e-11
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 7/49 (14%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
V K G K LG S+ + +G + + L+
Sbjct: 5 NVDLMKKAG-KELGLSLSPNE------IGCTIADLIQGQYPEIDSKLQR 46
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing
isoform B; GOPC PDZ domain, structural protein; NMR
{Homo sapiens}
Length = 103
Score = 53.1 bits (128), Expect = 9e-11
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
I V K +GLG SI GGK+ + I + I P A G L
Sbjct: 5 QGVGPIRKVLLLKEDH-EGLGISITGGKEHG---VPILISEIHPGQPADRCGGLH 55
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 52.4 bits (126), Expect = 2e-10
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 34 GKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
G S S + T V K LG +I GG ++ + + + TI G A + G LK
Sbjct: 1 GSSGS-SGTLVRVKKSAA--TLGIAIEGGANTRQPL--PRIVTIQRGGSAHNCGQLK 52
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS,
nitric oxide synthase, oxidoreductase; NMR {Rattus
norvegicus} SCOP: b.36.1.1
Length = 127
Score = 52.6 bits (126), Expect = 2e-10
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
+ +V K GLGF + P + + + G A +G ++
Sbjct: 9 VISVRLFKRKV-GGLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQ 53
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding;
1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 51.6 bits (124), Expect = 3e-10
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
S+ I TV + G LG +I G ++ I + ++ G A TG++
Sbjct: 1 SSGAIIYTVELKRYGG--PLGITISGTEEP---FDPIIISSLTKGGLAERTGAIH 50
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 126
Score = 52.6 bits (126), Expect = 3e-10
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 16 EEDEDEEEESQFCTLRRAGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVK 75
+ E + + +A S+ + T G GLG ++ + +
Sbjct: 3 SGSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGN--LGLGLVVIQNGP------YLQIS 54
Query: 76 TIFPTGQAADTGSLK 90
+ G AA G L+
Sbjct: 55 HLINKGAAASDGILQ 69
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 52.9 bits (127), Expect = 6e-10
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPK-GIMGIYVKTIFPTGQAADTGSLK 90
T V T P G G + G + + + I A G L+
Sbjct: 7 TTEVVLTADPV-TGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQ 56
Score = 47.1 bits (112), Expect = 7e-08
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 39 FTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
V K LG +I G + + I A TG+L+
Sbjct: 106 SGTFHVKLPKKHS-VELGITISSPSSRKPG-DPLVISDIKKGSVAHRTGTLEL 156
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 51.4 bits (123), Expect = 9e-10
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
V+ G G + LG +I GG + +GIY+ + P +A +G
Sbjct: 23 KVNLVLGDG-RSLGLTIRGGAEYG---LGIYITGVDPGSEAEGSG 63
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex,
PDZ tandem, alternative splicing, cell junction,
cytoplasm; 2.30A {Rattus norvegicus}
Length = 200
Score = 52.4 bits (126), Expect = 9e-10
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
T V K G LG ++ GG D V + G AA + L
Sbjct: 8 STVVELMKKEG-TTLGLTVSGGIDKD---GKPRVSNLRQGGIAARSDQLD 53
Score = 50.9 bits (122), Expect = 3e-09
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 39 FTITTVSFTKGPGFKGLGFSIVGGKD-SPKGIMGIYVKTIFPTGQAADTGSLK 90
F V+ K GF I GG + + + P G A G++K
Sbjct: 105 FRTVEVTLHKEGN--TFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIK 155
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 50.6 bits (121), Expect = 1e-09
Identities = 17/60 (28%), Positives = 20/60 (33%), Gaps = 6/60 (10%)
Query: 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPKGI------MGIYVKTIFPTGQAADTGSLKE 91
T V K K LGF I G GI++ + P G A TG L
Sbjct: 27 PETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAV 86
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 49.3 bits (118), Expect = 2e-09
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+ V+ K G + GFS+ G G+YVK I P G D G LK
Sbjct: 7 LHKVTLYKDSGMEDFGFSVADGLLEK----GVYVKNIRPAG-PGDLGGLKP 52
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 49.3 bits (118), Expect = 3e-09
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 33 AGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
+G S S I +V K P LGFS+ GG + +GI+V + A G
Sbjct: 3 SGSSGSDIIHSVRVEKSPA-GRLGFSVRGGSEHG---LGIFVSKVEEGSSAERAG 53
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 49.4 bits (118), Expect = 3e-09
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
V K PG LG S+ K I + I P +G+L
Sbjct: 18 MVEIVKTPG-SALGISLTTTSLRNKS--VITIDRIKPASVVDRSGALHP 63
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 48.6 bits (116), Expect = 6e-09
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
S+ V K G +GLG ++V + + + G A +G+L
Sbjct: 5 SSGDNCREVHLEKRRG-EGLGVALVESGWGSL-LPTAVIANLLHGGPAERSGALS 57
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 48.3 bits (115), Expect = 8e-09
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
V + +GLG SI G GI++ + P +A+ G
Sbjct: 18 KVFISLVGS-RGLGCSISSGPIQK---PGIFISHVKPGSLSAEVG 58
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell
adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 47.9 bits (114), Expect = 1e-08
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
++ V F KG +G + GG D +GI+V + AA G
Sbjct: 29 SMKLVKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG 68
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 49.2 bits (117), Expect = 1e-08
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
+ V + +GLG S+ GG + G+++ + GQA G
Sbjct: 85 LKEVRLDRLHP-EGLGLSVRGGLEFG---CGLFISHLIKGGQADSVG 127
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 47.3 bits (113), Expect = 1e-08
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 32 RAGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
SF V G + GF++ GG + + V I G+AA + ++
Sbjct: 3 SGSSGGSFQYVPVQLQGGAPW---GFTLKGGLEHC---EPLTVSKIEDGGKAALSQKMRT 56
>3e17_A Tight junction protein ZO-2; domain swapping, alternative
promoter usage, alternative splicing, cell junction,
cell membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 46.5 bits (111), Expect = 3e-08
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+ V K + + G I+VK + TG A G+L E
Sbjct: 1 MIGVLLMKSR--ANEEYGLRLGS-------QIFVKEMTRTGLATKDGNLHE 42
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 117
Score = 47.1 bits (112), Expect = 3e-08
Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 31 RRAGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
RR + V KG LG SIV G+ GIYV + A G
Sbjct: 10 RRKDRPYVEEPRHVKVQKGSE--PLGISIVSGEK-----GGIYVSKVTVGSIAHQAG 59
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 46.2 bits (110), Expect = 3e-08
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPK-----GIMGIYVKTIFPTGQAADTGSLK 90
V K P LGFSI GG GI+V + P G A+ L+
Sbjct: 6 RVRVEKDPE---LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQ 53
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L
homolog; PDZ domain, cellular signaling, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 46.8 bits (111), Expect = 3e-08
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 33 AGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGI-MGIYVKTIFPTGQAADTGSLK 90
AG+ T V T P G G + G + + + + I A G L+
Sbjct: 8 AGQVVHTETTEVVLTADPV-TGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQ 65
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 48.6 bits (115), Expect = 4e-08
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
V+ K GLG SI GG+++ M I + IF A T +L
Sbjct: 80 RVTVRKADA-GGLGISIKGGRENK---MPILISKIFKGLAADQTEALFV 124
Score = 34.3 bits (78), Expect = 0.004
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 54 GLGFSIVGGKDSPKGIMGIYVKTIFPTGQAA 84
L + V + +P Y++ GQ A
Sbjct: 209 SLKMAYVSRRCTPTDPEPRYLEICAADGQDA 239
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 48.7 bits (115), Expect = 4e-08
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 34 GKSASFTITTVSFTKGPGFKGLGFSIVGGKDSP--KGIMGIYVKTIFPTGQAADTGSLKE 91
G ++ +G GLGFSI GG D+P I++ I P G AA G L+
Sbjct: 53 GTEGEMEYEEITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRV 110
Score = 41.4 bits (96), Expect = 1e-05
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+ +G GLGF+IVGG+D GI++ I G A +G L++
Sbjct: 308 PRRIVIHRGST--GLGFNIVGGEDGE----GIFISFILAGGPADLSGELRK 352
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling
protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 45.5 bits (108), Expect = 7e-08
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPK-----GIMGIYVKTIFPTGQAADTGSLK 90
V K P LGFSI GG GI+V + P G A+ L+
Sbjct: 12 EIRVRVEKDPE---LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQ 61
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 46.6 bits (110), Expect = 7e-08
Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 10/57 (17%)
Query: 40 TITTVSFTKGPGFKGLGFSIVGGKDSP---------KGIMGIYVKTIFPTGQAADTG 87
+ +G LGFSI GG D K GIYV + G A G
Sbjct: 26 RVEIHKLRQGEN-LILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG 81
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens}
PDB: 3nfl_A 2vph_A
Length = 107
Score = 45.6 bits (108), Expect = 8e-08
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAA-DTGSLKE 91
+ + GF++ GG D M + V + P A L E
Sbjct: 18 LVLIRMKPDEN-GRFGFNVKGGYDQK---MPVIVSRVAPGTPADLCVPRLNE 65
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 44.6 bits (106), Expect = 2e-07
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
++ + K LG +I + + I V I G A +G +
Sbjct: 4 SVKIIRLVKNRE--PLGATIKKDEQTG----AIIVARIMRGGAADRSGLIHV 49
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 43.7 bits (103), Expect = 6e-07
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAA-DTGSLKE 91
+ + GF++ GG D M + V + P A L E
Sbjct: 16 LVLIRMKPDEN-GRFGFNVKGGYDQK---MPVIVSRVAPGTPADLCVPRLNE 63
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 43.0 bits (102), Expect = 6e-07
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
+V+ T + GF + GGKD M + + I P +AA +
Sbjct: 4 SVTLTGPGPW---GFRLQGGKDFN---MPLTISRITPGSKAAQSQ 42
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell
junction, membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 43.2 bits (102), Expect = 6e-07
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
T V+ K + G + I+VK I AA G+++E
Sbjct: 3 PTKVTLVKSAKNEEYGLRLASH---------IFVKEISQDSLAARDGNIQE 44
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein;
1.70A {Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 42.6 bits (101), Expect = 7e-07
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 48 KGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
GP GF I GG+D I V + G+A D
Sbjct: 9 AGPA--PWGFRITGGRDFH---TPIMVTKVAERGKAKDAD 43
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 42.3 bits (100), Expect = 9e-07
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
S V + GF + GGKD + + + + P G+AA G
Sbjct: 1 SMDSFKVVLEGPAPW---GFRLQGGKDFN---VPLSISRLTPGGKAAQAG 44
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma
homolog, phosphorylation, signaling PR LIM domain, PDZ
domain; 1.5A {Homo sapiens}
Length = 88
Score = 42.3 bits (100), Expect = 9e-07
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
S + +VS + GF + GGKD M + + ++ G+AA
Sbjct: 1 SMSNYSVSLVGPAPW---GFRLQGGKDFN---MPLTISSLKDGGKAAQAN 44
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; structural genomi consortium, SGC,
ATP-binding, cell junction; 1.60A {Homo sapiens}
Length = 88
Score = 42.3 bits (100), Expect = 1e-06
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 38 SFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
S + TV KGP G GF+I G VK I + + LKE
Sbjct: 1 SMELITVHIVKGP--MGFGFTIADSPGGG----GQRVKQIVD---SPRSRGLKE 45
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium
channel 3 chimera; PDZ domain, PDZ binding, GIRK3
regulation, early endosomes; 1.68A {Rattus norvegicus}
PDB: 3qdo_A 3qgl_A
Length = 107
Score = 42.0 bits (99), Expect = 2e-06
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 12/58 (20%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGI---------MGIYVKTIFPTGQAADTGSLKE 91
V K G GF++ G + +V + P G A G +++
Sbjct: 9 VVRIVKSES--GYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRK 63
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 41.2 bits (97), Expect = 3e-06
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 40 TITTVSFT-KGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
++TT +GPG GF +VGGKD + + + P G A +L
Sbjct: 1 SMTTQQIDLQGPG--PWGFRLVGGKDFE---QPLAISRVTP-GSKAALANLCI 47
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 113
Score = 41.7 bits (98), Expect = 3e-06
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Query: 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
T+ V K LG ++ D + + I G A +G L E
Sbjct: 25 TVKIVRIEKARD-IPLGATVRNEMD------SVIISRIVKGGAAEKSGLLHE 69
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A
2ocs_A
Length = 91
Score = 40.7 bits (96), Expect = 4e-06
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
KGP G GF + G K G Y++ + P A G
Sbjct: 6 LCCLEKGP--NGYGFHLHGEKGKL----GQYIRLVEPGSPAEKAG 44
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 40.7 bits (96), Expect = 4e-06
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 9/50 (18%)
Query: 42 TTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+ V+ K + G + I+VK I AA G+++E
Sbjct: 2 SKVTLVKSRKNEEYGLRLASH---------IFVKEISQDSLAARDGNIQE 42
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 40.7 bits (96), Expect = 5e-06
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
S+ + TV + GF I GG+D I V + G+A
Sbjct: 2 SSGSSGLTVDVAGPAPW---GFRISGGRDFH---TPIIVTKVTERGKAEAAD 47
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding,
protein-binding, RHOB, nitration, cytoplasm, PDZ
domain, CAsp8; 1.82A {Homo sapiens}
Length = 109
Score = 40.9 bits (96), Expect = 6e-06
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 10/49 (20%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
++ FT G LGF++ G + V + P A+ G +E
Sbjct: 26 SIRFTAEEG--DLGFTLRGNA-------PVQVHFLDPYCSASVAG-ARE 64
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 40.4 bits (95), Expect = 6e-06
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
+VS + GF + GGKD M + + ++ G+A+
Sbjct: 8 SVSLVGPAPW---GFRLQGGKDFN---MPLTISSLKDGGKASQAH 46
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 40.3 bits (95), Expect = 7e-06
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
+V+ + GF +VGG+D + + + +AA
Sbjct: 11 SVTLRGPSPW---GFRLVGGRDFS---APLTISRVHAGSKAALAA 49
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown
function; 1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 41.5 bits (96), Expect = 9e-06
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 53 KGLGFSIVGGKDSPK-----GIMGIYVKTIFPTGQAA 84
LGFSI GG GI+V + P G A+
Sbjct: 2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS 38
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 39.7 bits (93), Expect = 1e-05
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 6/56 (10%)
Query: 36 SASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+ + + F K + +G + + V I G GSL
Sbjct: 8 HSGHMVRLIQFEKVTE-EPMGICLKLNEK-----QSCTVARILHGGMIHRQGSLHV 57
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 39.3 bits (92), Expect = 1e-05
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 39 FTITTVSFTKGPG-FKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
F+ +S + PG GF+I GI+V ++ G A+ L+
Sbjct: 2 FSDMRISINQTPGKSLDFGFTIKWDIP------GIFVASVEA-GSPAEFSQLQV 48
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 39.2 bits (92), Expect = 2e-05
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
KGP +G GF++ K P G Y++++ P AA +G L+
Sbjct: 7 LCHLRKGP--QGYGFNLHSDKSRP----GQYIRSVDPGSPAARSG-LRA 48
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics, KIAA0705 protein; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 96
Score = 39.3 bits (92), Expect = 2e-05
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 33 AGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAA 84
+G S + T++ KG +G GF+I G VK I
Sbjct: 3 SGSSGQAELMTLTIVKGA--QGFGFTIADSPT------GQRVKQILDIQGCP 46
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 96
Score = 38.1 bits (89), Expect = 4e-05
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 9/58 (15%)
Query: 34 GKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+S TV K + GF I + + V + G +A G L
Sbjct: 2 SSGSSGVRHTVKIDKDTLLQDYGFHISES-------LPLTVVAVTA-GGSAH-GKLFP 50
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 38.1 bits (89), Expect = 4e-05
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
+ KGP G GF++ K P G +++++ P A +G
Sbjct: 12 LCTMKKGP--SGYGFNLHSDKSKP----GQFIRSVDPDSPAEASG 50
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM,
tight junction, cell adhesio; 2.50A {Homo sapiens} PDB:
3tsw_A 3lh5_A
Length = 391
Score = 39.8 bits (92), Expect = 5e-05
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
++ V F KG +G + GG D GI+V + AA G
Sbjct: 9 SMKLVKFRKG---DSVGLRLAGGNDV-----GIFVAGVLEDSPAAKEG 48
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 39.9 bits (92), Expect = 5e-05
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 40 TITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
++ V F KG +G + GG D GI+V + AA G
Sbjct: 1 SMKLVKFRKG---DSVGLRLAGGNDV-----GIFVAGVLEDSPAAKEG 40
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ
domain, protein, acetylation, cell projection, disease
mutation, membrane; NMR {Homo sapiens}
Length = 128
Score = 38.3 bits (89), Expect = 6e-05
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
+ KGP G GF++ K P G +++++ P A +G
Sbjct: 12 LCTMKKGP--SGYGFNLHSDKSKP----GQFIRSVDPDSPAEASG 50
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 37.7 bits (88), Expect = 7e-05
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 6/45 (13%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
V + GF + GG D + + I P +AA
Sbjct: 8 NVVLPGPAPW---GFRLSGGIDFN---QPLVITRITPGSKAAAAN 46
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A
{Homo sapiens}
Length = 95
Score = 37.4 bits (87), Expect = 9e-05
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 7/49 (14%)
Query: 42 TTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
V+ K LG +I ++K I G ++
Sbjct: 7 KEVNVYKSED--SLGLTITDNGVGY-----AFIKRIKDGGVIDSVKTIC 48
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 37.3 bits (87), Expect = 9e-05
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+ KGP +G GF + K G G ++ + P G A ++
Sbjct: 6 CLHLEKGP--QGFGFLLREEK-GLDGRPGQFLWEVDP-GLPAKKAGMQA 50
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 37.0 bits (86), Expect = 1e-04
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 10/49 (20%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
++ +G G GF+I + V+ + G A G L++
Sbjct: 6 QITIPRGKD--GFGFTICCDS-------PVRVQAVDSGGPAERAG-LQQ 44
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 36.4 bits (85), Expect = 1e-04
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 10/49 (20%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+V +G G GF++ G + + G AD L+
Sbjct: 5 SVEVARGRA--GYGFTLSGQA-------PCVLSCVMR-GSPADFVGLRA 43
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 36.1 bits (84), Expect = 2e-04
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
V KG G GF + G + G +K I P G A+ LK
Sbjct: 8 VVVIKKGS--NGYGFYLRAGPEQK----GQIIKDIEP-GSPAEAAGLKN 49
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 36.2 bits (84), Expect = 3e-04
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKED 92
K G GFS+ + G+Y+ I P G A G L +D
Sbjct: 11 LCYLVKEGG--SYGFSLKTVQGKK----GVYMTDITPQGVAMRAGVLADD 54
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding
protein; PDZ domain, cytoplasm, membrane, polymorphism,
protein binding; 2.70A {Homo sapiens}
Length = 104
Score = 35.9 bits (83), Expect = 4e-04
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 6/53 (11%)
Query: 43 TVSFTKGPGFKGLGFSIVGGK----DSPKGIMGIYVKTIFPTGQAADTGSLKE 91
V+ K + GF I + ++ M + I A L+
Sbjct: 18 LVTVEKQDN-ETFGFEIQSYRPQNQNACSSEMFTLICKIQE-DSPAHCAGLQA 68
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 35.7 bits (82), Expect = 4e-04
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 40 TITTVSFTKGPGFK-GLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
++ K GFS+ ++ GI +YV ++ TG A+ G
Sbjct: 6 VTHSIHIEKSDTAADTYGFSLSSVEED--GIRRLYVNSVKETGLASKKG 52
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 35.4 bits (82), Expect = 4e-04
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 6/50 (12%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLK 90
V F K + +G ++ + + V I G G+L
Sbjct: 2 SRLVQFQKNTD-EPMGITLKMNELN-----HCIVARIMHGGMIHRQGTLH 45
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 35.4 bits (82), Expect = 5e-04
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
V KG G GF + G + G +K I P G A+ LK
Sbjct: 9 VVVIKKGS--NGYGFYLRAGPEQK----GQIIKDIEP-GSPAEAAGLKN 50
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 35.3 bits (82), Expect = 6e-04
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
KG G GF + + P G ++K + G AD L++
Sbjct: 6 LCRLAKGEN--GYGFHLNAIRGLP----GSFIKEVQK-GGPADLAGLED 47
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 35.1 bits (81), Expect = 6e-04
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
Query: 33 AGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
G + ++ +G G GF+I + V+ + G A G L++
Sbjct: 8 EGDPENGEKLQITIRRGKD--GFGFTICCDS-------PVRVQAVDSGGPAERAG-LQQ 56
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 35.4 bits (81), Expect = 8e-04
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 40 TITTVSFTKGPGFK-GLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
++ K GFS+ ++ GI +YV ++ TG A+ G
Sbjct: 15 VTQSIHIEKSDTAADTYGFSLSSVEE--DGIRRLYVNSVKETGLASKKG 61
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation,
cell projection, disease mutation, membrane,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 216
Score = 35.9 bits (82), Expect = 9e-04
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
+ KGP G GF++ K P G +++++ P A +G
Sbjct: 12 LCTMKKGP--SGYGFNLHSDKSKP----GQFIRSVDPDSPAEASG 50
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 35.6 bits (82), Expect = 0.001
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
V K +G + + GI+V+ + A+ G
Sbjct: 7 EVILCKDQD-GKIGLRLKSIDN------GIFVQLVQANSPASLVG 44
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 3; structural genomics consortium, SGC, PDZ
domain, signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 34.0 bits (78), Expect = 0.002
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAA 84
+ T+ KGP KG GF+I G VK I +
Sbjct: 13 LVTIPLIKGP--KGFGFAIAD------SPTGQKVKMILDSQWCQ 48
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding;
1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 33.1 bits (76), Expect = 0.003
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 43 TVSFTKGPGFKGLGFSIVGGK----DSPKGIMGIYVKTIFPTGQAADTG 87
++ KG + GF I + + M +V + + A G
Sbjct: 7 VLTLEKGDN-QTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG 54
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 33.2 bits (76), Expect = 0.004
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 10/49 (20%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKE 91
+ FT G LGF++ G + V + P A+ G KE
Sbjct: 18 GIHFTVEEG--DLGFTLRGNT-------PVQVHFLDPHCSASLAG-AKE 56
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 32.9 bits (75), Expect = 0.006
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 10/54 (18%)
Query: 43 TVSFTKGPGFKGLGFSIVGGK---------DSPKGIMGIYVKTIFPTGQAADTG 87
TV K +G GF + G K +P Y++++ G A G
Sbjct: 10 TVLLQKKDS-EGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG 62
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70
kDa, Na/PI cotransporter C- terminal-associated
protein, NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 32.4 bits (74), Expect = 0.007
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 33 AGKSASFTITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKED 92
+G +++F +K G + GF + K G ++ I A G L D
Sbjct: 6 SGMASTFNPRECKLSKQEG-QNYGFFLRIE----KDTDGHLIRVIEEGSPAEKAGLLDGD 60
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 32.0 bits (73), Expect = 0.009
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 43 TVSFTKGPGFKGLGFSIVGGK----DSPKGIMGIYVKTIFPTGQAADTG 87
+ K GFS+ + DS + V ++ A + G
Sbjct: 5 PIVIHSSG--KKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG 51
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ
domain, arhgef11, KIAA0380, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 31.9 bits (73), Expect = 0.011
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 9/45 (20%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
V K G GF++ G + + V+++ P G A G
Sbjct: 11 CVIIQKDQ--HGFGFTVSGDR-------IVLVQSVRPGGAAMKAG 46
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 31.9 bits (72), Expect = 0.017
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 10/66 (15%)
Query: 31 RRAGKSASFTITTVSFTKGPGFKGLGFSIVGGK---------DSPKGIMGIYVKTIFPTG 81
R +G TV K +G GF + G K +P Y++++ G
Sbjct: 18 RGSGSDYIIKEKTVLLQKKDS-EGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGG 76
Query: 82 QAADTG 87
A G
Sbjct: 77 VAWRAG 82
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI,
signaling protein; 1.80A {Mus musculus}
Length = 106
Score = 31.3 bits (71), Expect = 0.024
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTG 87
+K G + GF + KD G ++ I A G
Sbjct: 4 ESKLSKQEG-QNYGFFLRIEKD----TDGHLIRVIEEGSPAEKAG 43
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1;
copper chaperone for superoxide dismutase, neuronal
adaptor, protein transport; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 90
Score = 28.6 bits (64), Expect = 0.15
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Query: 41 ITTVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKED 92
+TTV + LGFS+ G + ++ G A G
Sbjct: 12 VTTVLIRRPDLRYQLGFSVQNG----------IICSLMRGGIAERGGVRVGH 53
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA-
binding, transport, tRNA processing, tRNA-binding, RNA
binding protein; 3.10A {Schizosaccharomyces pombe} PDB:
3icq_T*
Length = 980
Score = 28.7 bits (63), Expect = 0.33
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 11 EDQEQEEDEDEEEESQFCTLRRAGKSASFTITTV 44
E QE ++D D EEE++F +R+ K TI ++
Sbjct: 395 ESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSI 428
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 27.3 bits (61), Expect = 0.40
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 11/50 (22%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSPKGIMGIYVKTIFPTGQAADTGSLKED 92
T++ K +GF GK + +I AA G L E
Sbjct: 7 TITMHKDST-GHVGFIFKNGK----------ITSIVKDSSAARNGLLTEH 45
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 0.57
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 7 QEENEDQEQEEDEDEEEESQ 26
+EE + QE D + Q
Sbjct: 91 REEQRKRLQELDAASKVMEQ 110
Score = 24.7 bits (53), Expect = 7.4
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 8/37 (21%)
Query: 7 QEE-------NEDQEQE-EDEDEEEESQFCTLRRAGK 35
+E E+Q + ++ D + R K
Sbjct: 81 TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAK 117
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 26.9 bits (60), Expect = 0.75
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 29 TLRRAGKSASFTITTVSFTKGPGFKGLGFSIV 60
T R K + F P GLG ++
Sbjct: 58 TFIRDRKQHEAELVLKPFPHHPNQIGLGVTLE 89
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 26.1 bits (58), Expect = 1.3
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 29 TLRRAGKSASFTITTVSFTKGPGFKGLGFSIV 60
+ R K T+T F P G+G S+
Sbjct: 54 KIEREEKEKRVTLTLKQFPDEPDRAGIGVSLE 85
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 26.4 bits (58), Expect = 1.6
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 27/70 (38%)
Query: 43 TVSFTKGPGFKGLGFSIVGGKDSP-------------------------KGIMGIYVKTI 77
TV+ + +G GF++ P + + I+VK +
Sbjct: 11 TVTLKRTS--QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQV 68
Query: 78 FPTGQAADTG 87
G A + G
Sbjct: 69 KEGGPAFEAG 78
>3aq2_A 6B protein; miRNA machineries, toxin, ADP-ribosylation fold; 1.65A
{Agrobacterium vitis} PDB: 3aq3_A
Length = 207
Score = 25.2 bits (54), Expect = 4.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 6 FQEENEDQEQEEDEDEEEESQFCTL 30
+ EE ED E E+E+EEEE++ L
Sbjct: 165 YVEEGEDNEGIENEEEEEETREFQL 189
>1z9v_A Conserved hypothetical protein MTH0776; solution structure,
archaeabacterium, unknown function; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 121
Score = 24.7 bits (53), Expect = 6.4
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 50 PGFKGLGFSIVGGKDSPKGIMGIYVKTIFP 79
PG K LG I+G P GI + P
Sbjct: 63 PGEKILGARIIGIPPVPIGIDEERSTVMIP 92
>3lu0_E DNA-directed RNA polymerase subunit omega; E. coli RNA
polymerase, nucleotidyltransferase, transcription,
transferase; 11.20A {Escherichia coli} PDB: 3iyd_E*
Length = 91
Score = 24.1 bits (52), Expect = 6.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 1 MITFAFQEENEDQEQEEDEDEEEES 25
+I + E QEQ+E E E ++
Sbjct: 58 LINNQILDVRERQEQQEQEAAELQA 82
Score = 24.1 bits (52), Expect = 8.0
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 7 QEENEDQEQEEDEDEEEES 25
+E E QEQE E + +
Sbjct: 67 RERQEQQEQEAAELQAVTA 85
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH
UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 24.5 bits (52), Expect = 8.0
Identities = 9/18 (50%), Positives = 16/18 (88%)
Query: 7 QEENEDQEQEEDEDEEEE 24
++E++D + +EDE+EEEE
Sbjct: 55 EDEDDDDDDDEDEEEEEE 72
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1
c.62.1.3 PDB: 1jeq_A* 3rzx_B
Length = 609
Score = 24.9 bits (53), Expect = 8.5
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 1 MITFAFQEENEDQEQEEDEDEEEESQFCTLRRAGKSA 37
M + + E E+ E+E EE + +G+ +
Sbjct: 1 MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDS 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.130 0.358
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,545,231
Number of extensions: 81669
Number of successful extensions: 609
Number of sequences better than 10.0: 1
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 200
Length of query: 108
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 36
Effective length of database: 4,691,481
Effective search space: 168893316
Effective search space used: 168893316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.0 bits)