BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4604
(302 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3SZE9|TBCC_BOVIN Tubulin-specific chaperone C OS=Bos taurus GN=TBCC PE=2 SV=1
Length = 345
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 144/278 (51%), Gaps = 19/278 (6%)
Query: 14 IPERLLKREQERISAIEKRQEKKGDKE-HDGFSNMFNENYDKIKGMINEIDVDPNSGSVN 72
+PERL KRE ER +E+R++K+ D+E + S+ F + + + + E+ +
Sbjct: 25 VPERLQKREHERQLEVERRKQKRQDQEVEEEKSDFFAAAFARERSAVEEL--------LE 76
Query: 73 KEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRKK 132
E E+ + ++ L +I D+ +FL +YD++ L L +L P+K+
Sbjct: 77 SGESVERLEEAAARLQGLQKLINDSVLFLAAYDLRQAQEVLARLQAALAKRRQELQPKKR 136
Query: 133 FGFKKVDKVKLGGQGDKTDEAEKKILPKDDVDFVKPRQHEEE-----TYI-GFYNRSNET 186
F FK K T A P + P +EE ++I GF N ++
Sbjct: 137 FAFKTRKK----DAASATQVASAPDAPAAEGSLTSPPPLKEEGDFDSSWICGFSNLQSQV 192
Query: 187 LELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDST 246
LE +E++H++ V L+ + +C +K+ GN +T+ L + + GPVS SVF+++C+D
Sbjct: 193 LEKRAEELHQQDVLLTQLRNCTIKLYGNPNTLRLTKAQGCTLLCGPVSTSVFLEDCSDCV 252
Query: 247 LYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
L +AC QLR+HT+ ++L VTSR I+E C I FAP
Sbjct: 253 LAVACQQLRVHTTKDTRIFLQVTSRAIMEDCTGIQFAP 290
>sp|Q8VCN9|TBCC_MOUSE Tubulin-specific chaperone C OS=Mus musculus GN=Tbcc PE=2 SV=1
Length = 341
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 143/278 (51%), Gaps = 22/278 (7%)
Query: 14 IPERLLKREQERISAIEKRQEKKGDKE-HDGFSNMFNENYDKIKGMINEIDVDPNSGSVN 72
+PERL +REQER +E+R++K+ D+E + S F + + + + E+ +
Sbjct: 24 VPERLQRREQERQIEVERRKQKRQDQEVEEEKSGFFAAAFARERAAVEEL--------LR 75
Query: 73 KEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRKK 132
E E+ + ++ L ++ D+ +FL +YD++ L +L +L P+K+
Sbjct: 76 GEASAERLEEAANRLQGLRKLLNDSVLFLAAYDLRQGQAALAQLQAVLTERRQELQPKKR 135
Query: 133 FGFKKVDKVKLGGQGDKTDEAEKKILPKDDVDFVKPRQHEEE------TYIGFYNRSNET 186
F FK K D A+ P P EEE GF N ++
Sbjct: 136 FAFKARKK-------DAAGTAQVDAAPVTSAAPSPPVTKEEEGAPGASWACGFSNLESQD 188
Query: 187 LELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDST 246
LE +E++H++ V LS++ +C VK+ GN +T+ L + ++ GPV+ SVF+++C D
Sbjct: 189 LEKRAEELHQRDVLLSDLTNCTVKLCGNPNTLRLAKARGCKVLCGPVTTSVFLEDCRDCV 248
Query: 247 LYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
L +AC QLR+HT+ V+L VTSR I+E C I FAP
Sbjct: 249 LAVACQQLRVHTTKDTRVFLQVTSRAIVEDCSGIQFAP 286
>sp|Q5R5J7|TBCC_PONAB Tubulin-specific chaperone C OS=Pongo abelii GN=TBCC PE=2 SV=1
Length = 346
Score = 137 bits (345), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 146/278 (52%), Gaps = 18/278 (6%)
Query: 14 IPERLLKREQERISAIEKRQEKKGDKEHDGF-SNMFNENYDKIKGMINEIDVDPNSGSVN 72
+PERL +REQER +E+R++K+ ++E + S+ F + + + + E+ +
Sbjct: 25 VPERLQRREQERQLEVERRKQKRQNQEVEKENSHFFAATFARERAAVEEL--------LE 76
Query: 73 KEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRKK 132
+ E E+ + ++ L +I D+ FL +YD++ L L +L P+K+
Sbjct: 77 RAESVERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRELQPKKR 136
Query: 133 FGFKKVDKVKLGGQGDKTDEAEKKILPKDDV--DFVKPRQHE----EETYIGFYNRSNET 186
F FK + K K D A I P + D P++ E GF N ++
Sbjct: 137 FAFKT--RGKDAASCTKVDAA-PGIPPAVESIQDSPLPKKAEGDLGSSWLCGFSNLESQV 193
Query: 187 LELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDST 246
LE + ++H++ V L+ + +C V++ GN +T+ L + ++ GPVS SVF+++C+D
Sbjct: 194 LEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCV 253
Query: 247 LYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
L +AC QLR+H++ ++L VTSR I+E C I FAP
Sbjct: 254 LAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAP 291
>sp|Q15814|TBCC_HUMAN Tubulin-specific chaperone C OS=Homo sapiens GN=TBCC PE=1 SV=2
Length = 346
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 149/278 (53%), Gaps = 18/278 (6%)
Query: 14 IPERLLKREQERISAIEKRQEKKGDKEHDGF-SNMFNENYDKIKGMINEIDVDPNSGSVN 72
+PERL +REQER +E+R++K+ ++E + S+ F + + + + E+ +
Sbjct: 25 VPERLQRREQERQLEVERRKQKRQNQEVEKENSHFFVATFVRERAAVEEL--------LE 76
Query: 73 KEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRKK 132
+ E E+ + ++ L +I D+ FL +YD++ L L L P+K+
Sbjct: 77 RAESVERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKR 136
Query: 133 FGFKKVDKVKLGGQGDKTDEAEKKILPKDDV--DFVKPRQHEEE---TYI-GFYNRSNET 186
F FK + K K D A I P + D P++ E + +++ GF N ++
Sbjct: 137 FAFKT--RGKDAASSTKVDAA-PGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQV 193
Query: 187 LELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDST 246
LE + ++H++ V L+ + +C V++ GN +T+ L + ++ GPVS SVF+++C+D
Sbjct: 194 LEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCV 253
Query: 247 LYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
L +AC QLR+H++ ++L VTSR I+E C I FAP
Sbjct: 254 LAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAP 291
>sp|Q9SMR2|TBCC_ARATH Tubulin-folding cofactor C OS=Arabidopsis thaliana GN=POR PE=1 SV=1
Length = 345
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 10/241 (4%)
Query: 44 FSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTS 103
F F+++ I+ I E + S S + +LK A+I+ I L ++ + FL S
Sbjct: 56 FLAKFSDSKRSIESRIAESRL--ASSSTDSSKLKSDLAEISVAIDNLEKLLAENSYFLPS 113
Query: 104 YDMKIYNNKLQELTEQCNILETKLLPRKKFGFKKVDKVKLGGQGDKTDEAEKKILPKDDV 163
Y+++ + +L + +IL +L+P+KKF FK K E++ + K DV
Sbjct: 114 YEVRSSLKIVSDLKQSLDILSGELVPKKKFSFKSKSTTK-------KPESKLPEIQKPDV 166
Query: 164 DFVKPRQHEEETYIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNI 223
+ P+ G N+ ETL E +LS++DSC VK+ G + + L+ +
Sbjct: 167 -VLPPKLVPVRDSPGLRNKHGETLVKSFEGSSIGEFTLSDLDSCQVKLTGTVNALFLHRL 225
Query: 224 KNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFA 283
K ++ GPV S+ ID+ D L LA HQ+R+H + K YL V SRPIIE + FA
Sbjct: 226 KKCSVYTGPVIGSILIDDVEDCVLVLASHQIRIHCARKSDFYLRVRSRPIIEDSNGVRFA 285
Query: 284 P 284
P
Sbjct: 286 P 286
>sp|Q9EPK2|XRP2_MOUSE Protein XRP2 OS=Mus musculus GN=Rp2 PE=1 SV=3
Length = 347
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 151 DEAEKKILPKDDVDFVKPRQHEEETYIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVK 210
+E + K+ D + V P+ + F +ET+ V + + + ++C +
Sbjct: 17 EEEQPKLYSWDQREKVDPKDYM------FSGLKDETVGRLPGKVAGQQFVIQDCENCNIY 70
Query: 211 VNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTS 270
+ +++TI +++ N IFLGPV SVF NC D LAC Q R+ K V+L +
Sbjct: 71 IFDHSATITIDDCTNCVIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCCAT 130
Query: 271 RPIIEHCKNIGFA 283
+PIIE NI F
Sbjct: 131 QPIIESSTNIKFG 143
>sp|O75695|XRP2_HUMAN Protein XRP2 OS=Homo sapiens GN=RP2 PE=1 SV=4
Length = 350
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 11/149 (7%)
Query: 143 LGGQGDKTDEAEKKILPKDDVDFVKPRQHEEET--------YIGFYNRSNETLELPSEDV 194
+G K +A+K+ P+++ + +P+Q+ + Y+ F +ET+ V
Sbjct: 1 MGCFFSKRRKADKESRPENEEE--RPKQYSWDQREKVDPKDYM-FSGLKDETVGRLPGTV 57
Query: 195 HKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQL 254
+ + + ++C + + +++T+ +++ N IFLGPV SVF NC D LAC Q
Sbjct: 58 AGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQF 117
Query: 255 RMHTSHKCSVYLHVTSRPIIEHCKNIGFA 283
R+ K V+L ++PIIE NI F
Sbjct: 118 RVRDCRKLEVFLCCATQPIIESSSNIKFG 146
>sp|Q5ZHN4|XRP2_CHICK Protein XRP2 OS=Gallus gallus GN=RP2 PE=2 SV=3
Length = 357
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%)
Query: 179 FYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVF 238
F +ET+ V + + + ++C + + +++T+ +++ N QIFLGP+ SVF
Sbjct: 49 FSGLKDETVGRLPGRVAGQQFVIQDCENCSIYIFDHSATVTIDDCVNCQIFLGPIKGSVF 108
Query: 239 IDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFA 283
NC D +AC Q R + V+L ++PIIE + F
Sbjct: 109 FRNCKDCKCIVACQQFRTRDCRRLEVFLCCATQPIIESSTGMKFG 153
>sp|Q9P3T8|TBCC_SCHPO Tubulin-specific chaperone C OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cin2 PE=3 SV=1
Length = 259
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 14/186 (7%)
Query: 101 LTSYDMKIYNNKLQELTEQCNILETKLLPRKKFGFKKVDKVKLGGQGDKTDEAEKKILPK 160
+ YD ++ +L +LT + + +LPR+ F F++ VK + +K +
Sbjct: 55 IAPYDRRVCMEQLVDLTRRLQQIRHDILPRQPFRFQRALHVK----------SSQKPVKN 104
Query: 161 DDVDFVKPRQHEEETYIGFYNRSNETLE---LPSEDVHKKPVSLSNIDSCVVKVNGNAST 217
V+ P + E + N N+ + +P + VS ++ SC + + N S+
Sbjct: 105 ITVNAEAPEVYFENDTLYLANLKNQNIGDNVIPYPNNKAVKVSAKSLRSCNISI-SNCSS 163
Query: 218 IHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHC 277
++L+N + S+ + + DST+ ++CHQ R+H S V+L + P+IE
Sbjct: 164 VNLHNATKCNFTFPTIQGSIHLSDINDSTICVSCHQFRLHHSTNLRVHLRCKTSPVIEES 223
Query: 278 KNIGFA 283
K I F+
Sbjct: 224 KEISFS 229
>sp|Q8AVX5|XRP2_XENLA Protein XRP2 OS=Xenopus laevis GN=rp2 PE=2 SV=3
Length = 353
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 55/105 (52%)
Query: 179 FYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVF 238
F ++T+ + V + + ++C + + +++TI +++ N +IFLGPV SVF
Sbjct: 45 FTGLKDQTVGKLPDKVAGQQFVIQECENCNIYIFDHSATITIDDCTNCRIFLGPVKGSVF 104
Query: 239 IDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFA 283
+C D +AC Q R + V+L +++PIIE ++ F
Sbjct: 105 FRDCKDCKCVVACQQFRTRDCRRMDVFLCCSTQPIIESSTSMKFG 149
>sp|Q54PY1|TBCC_DICDI Tubulin-specific chaperone C OS=Dictyostelium discoideum GN=tbcc
PE=3 SV=1
Length = 420
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 201 LSNIDSCVVKVNGNAST-IHLNNIKNSQIFL-GPVSNSVFIDNCTDSTLYLACHQLRMHT 258
+S++ C V ++ T + +NN+ N +I P+ S+FIDNC +S L Q+R+H
Sbjct: 267 ISDLTDCTVILDMKVLTALKINNLVNCKIRANSPIDGSIFIDNCINSIFSLVSRQIRIHY 326
Query: 259 SHKCSVYLHVTSRPIIEHCKNIGFAPAV 286
C + V S PIIE K I F+ +
Sbjct: 327 CTDCQFNIFVKSNPIIEGSKQIKFSSYL 354
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 14 IPERLLKREQERI-SAIEKRQEKKGDKEHDGFSNMFNENY-------DKIKGMINEIDVD 65
+ ++ ++E++R+ S +EKR+ ++ SN+ +E D I+ +NEI +
Sbjct: 22 VKKQFQEKEKQRLQSKLEKREISNKEQIDQSSSNIASETLLLINNLSDDIENRLNEISNN 81
Query: 66 PNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILET 125
N E+LKE + + + + +N + + LTSYD+K + L +Q + +
Sbjct: 82 TNENKA--EDLKESYNQMEESLSEINSITTMSSHILTSYDVKSILENIDNLRKQIDKSKE 139
Query: 126 KLLPRKKFGF 135
K +P++K
Sbjct: 140 KYMPKQKLSL 149
>sp|Q5FVR8|TBCC1_RAT TBCC domain-containing protein 1 OS=Rattus norvegicus GN=Tbccd1
PE=2 SV=1
Length = 569
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 184 NETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCT 243
N+TL SE + V + + + ++ + +NS LGPV ++ + C
Sbjct: 317 NQTLAKSSETLVGAHVRAHRCNESFIYLLSPLRSMTIEKCRNSTFVLGPVETALHLHGCE 376
Query: 244 DSTLYLACHQLRMHTSHKCSVYLHVTSRP-IIEHCKNIGFAPAVNIDPVL 292
+ + CH+L + ++ C+ ++ SRP I+ + + FAP P+L
Sbjct: 377 NLKVIAVCHRLSVSSTIGCTFHIMTPSRPLILSGNQTVTFAPFHTHYPML 426
>sp|Q640P7|TBCC1_MOUSE TBCC domain-containing protein 1 OS=Mus musculus GN=Tbccd1 PE=1
SV=1
Length = 552
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 217 TIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRP-IIE 275
++ + +NS LGPV ++ + +C + + CH+L + ++ C+ ++ SRP I+
Sbjct: 350 SMTIEKCRNSTFVLGPVETTLHLHDCENLKVIAVCHRLSISSTTSCTFHIMTPSRPLILS 409
Query: 276 HCKNIGFAPAVNIDPVL 292
+ + FAP P+L
Sbjct: 410 GNQTVTFAPFHTHYPML 426
>sp|A4IF93|TBCC1_BOVIN TBCC domain-containing protein 1 OS=Bos taurus GN=TBCCD1 PE=2 SV=1
Length = 557
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
Query: 166 VKPRQHEEETYIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKN 225
V PR H Y +TL S+ + V + + + + ++ + +N
Sbjct: 302 VAPRMHRMVVMSQVYK---QTLAKSSDTLVGAHVKIHRCNESFIYLLSPLRSVTIEKCRN 358
Query: 226 SQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRP-IIEHCKNIGFAP 284
S LGPV ++ + +C + + CH+L + ++ C ++ +RP I+ + + FAP
Sbjct: 359 STFVLGPVQTALHLHSCDNVKVIAVCHRLSISSTTGCIFHILTPTRPLILSGNQRVTFAP 418
Query: 285 AVNIDPVL 292
P+L
Sbjct: 419 FHTHYPML 426
>sp|Q9NVR7|TBCC1_HUMAN TBCC domain-containing protein 1 OS=Homo sapiens GN=TBCCD1 PE=2
SV=1
Length = 557
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
Query: 166 VKPRQHEEETYIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKN 225
V PR H Y +TL S+ + V + + + + ++ + +N
Sbjct: 302 VAPRMHRLVVMSQVYK---QTLAKSSDTLAGAHVKIHRCNESFIYLLSPLRSVTIEKCRN 358
Query: 226 SQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRP-IIEHCKNIGFAP 284
S LGPV ++ + +C + + CH+L + ++ C ++ +RP I+ + + FAP
Sbjct: 359 SIFVLGPVGTTLHLHSCDNVKVIAVCHRLSISSTTGCIFHVLTPTRPLILSGNQTVTFAP 418
Query: 285 AVNIDPVL 292
P+L
Sbjct: 419 FHTHYPML 426
>sp|Q08AV6|TBCC1_XENLA TBCC domain-containing protein 1 OS=Xenopus laevis GN=tbccd1 PE=2
SV=1
Length = 547
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 183 SNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNC 242
S +TL S+ + V + C + + ++ + +N I LGPV + I C
Sbjct: 316 SKQTLAKSSKTLVDARVKIHRCSDCYIYLLSPLRSVTVEKCQNCTIILGPVQTVLHIQMC 375
Query: 243 TDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIG 281
+ + C +L + ++ C+ ++ +RP+ +C N G
Sbjct: 376 YNVKIIAVCQRLSLLSTTNCTFHILTPTRPLF-YCGNQG 413
>sp|A1L0Z4|TBCC1_XENTR TBCC domain-containing protein 1 OS=Xenopus tropicalis GN=tbccd1
PE=2 SV=1
Length = 547
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 183 SNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNC 242
S +TL S+ + V + C + + ++ + +N I LGPV + I C
Sbjct: 316 SKQTLAKSSKTLVDARVKIHRCSDCYIYLLSPLRSVTVEKCQNCTIVLGPVQTVLHIQMC 375
Query: 243 TDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAPA 285
+ + C +L + ++ C+ ++ +RP+ +C N G A
Sbjct: 376 YNVKIIAVCQRLSLLSTTNCTFHVLTPTRPLF-YCGNQGVVLA 417
>sp|Q5ZKT1|TBCC1_CHICK TBCC domain-containing protein 1 OS=Gallus gallus GN=TBCCD1 PE=2
SV=1
Length = 555
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 217 TIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRP-IIE 275
++ + +NS LGPV SV + +C + + CH L + ++ C+ ++ ++P I+
Sbjct: 348 SVTIEKCRNSTFVLGPVEASVHVHSCDNIKVITVCHCLSLSSTTGCTFHILTPTQPLILA 407
Query: 276 HCKNIGFAPAVNIDPVL 292
+ I FAP P+L
Sbjct: 408 GNQAISFAPFHTHYPML 424
>sp|A4QP31|TBCC1_DANRE TBCC domain-containing protein 1 OS=Danio rerio GN=tbccd1 PE=2 SV=3
Length = 582
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%)
Query: 185 ETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTD 244
+TL SE ++ + L + + ++ L+ +NS + LGPV SV I +C +
Sbjct: 319 QTLAKDSEKLNDVNIKLHRCSEAFIYLLSPLWSVTLDKCRNSTLVLGPVRTSVHIQSCEN 378
Query: 245 STLYLACHQLRMHTSHKCSVYLHVTSRPII 274
+ +L + S C+++ +RP++
Sbjct: 379 VRVVCVAGRLTIGGSFNCTIHSLTPTRPLL 408
>sp|Q57706|Y258_METJA Uncharacterized protein MJ0258 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0258 PE=4 SV=1
Length = 404
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 19/114 (16%)
Query: 1 MENENISLGQEVNIPE--RLLKREQERISAIEKRQEKKGDKEHDGFSNMFNENYDKIKGM 58
+ E ++LG EV++ + + +K+ ++ +K +EK G+K + F E YD++
Sbjct: 17 LAEEYLNLGYEVDVWDIYQKIKKSEDFKVKYQKLKEKFGNKLNLFFEQPNFEKYDRVIAP 76
Query: 59 IN-EIDVD--PNSGSVNKEELKEKFADINKQIL-------------LLNHVIVD 96
I+ IDVD P + +V+K LKEKF +I+K+I+ L+NH++ D
Sbjct: 77 IHCPIDVDFIPFTDAVSKI-LKEKFGNIHKKIINVTGVKGKTTTTSLINHILKD 129
>sp|Q06277|IBPA_HAES2 Adenosine monophosphate-protein transferase and cysteine protease
IbpA OS=Haemophilus somnus (strain 2336) GN=ibpA PE=1
SV=2
Length = 4095
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 60 NEIDVDPNSGSVNKEELKEKFADIN-------KQILLLNHVIVDAKIFLTSYDMKIYNNK 112
N+I ++ N G + +L +K N K+I + N + D I +T+ D+K+ NNK
Sbjct: 394 NDIKIESNKGDI---DLGDKLQAKNEISLNNAKRITIANEITADKSITITADDVKLKNNK 450
Query: 113 LQELTEQCNILETKLLPRKKFGFKKV 138
TE E KL + K KKV
Sbjct: 451 EASATE-----EAKLKGKGKLASKKV 471
>sp|Q74ZM2|BUR2_ASHGO Protein BUR2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=BUR2 PE=3 SV=3
Length = 401
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 35/162 (21%)
Query: 56 KGMINEIDVDPNSGSVNKEELKE---KFADINKQILLLNHVIVDAKIFLTSYDMKIYN-- 110
K +++ + DP + + K+++++ F I K + L +H A I Y IY
Sbjct: 61 KEIVDRLGTDPKAAQLTKKKMEKCLMYFYMIKKNLRLFDHTYTAACILFFRY-WYIYELP 119
Query: 111 NKLQE--------LTEQCNILE----------------TKLLPRKKFGFKKVDKVKLGGQ 146
LQ+ L C +E K L +++ G + +DK+K +
Sbjct: 120 QSLQDCIHLSQAILATACKAMENNRPLDMYVKATCEFMMKDLAQQQRGRQNMDKLKWDVR 179
Query: 147 GDKTDEAEKKILPKD--DVDFVKPRQHEEETYIGFY--NRSN 184
DK EK++L + D+D P++ EE + GFY NR N
Sbjct: 180 -DKLVRYEKQLLCQFGFDLDLQNPKELIEEIFSGFYRFNRDN 220
>sp|C6DA54|ACKA_PECCP Acetate kinase OS=Pectobacterium carotovorum subsp. carotovorum
(strain PC1) GN=ackA PE=3 SV=1
Length = 400
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 151 DEAEKKILPKDDVDFVKPRQHEEETYI---GFYNRSNETLELPSEDVHKKPVSLSNIDSC 207
D A + +P++ + P + +E +I GF+ S+ + + V KPV N+ +C
Sbjct: 150 DTAFHQTMPEESYLYALPYKLYKENHIRRYGFHGTSHYFVSREAAKVLNKPVEELNVITC 209
Query: 208 VVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTD 244
+ G+ + I ++ + L P+ V C D
Sbjct: 210 HLGNGGSVTAIRNGECVDTSMGLTPLEGLVMGTRCGD 246
>sp|Q3E958|SHN3_ARATH Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis
thaliana GN=SHN3 PE=2 SV=1
Length = 189
Score = 31.2 bits (69), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 208 VVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSH 260
V+K NG ++++ +N+ S L + N+ NC D T YL C +L +SH
Sbjct: 64 VIKSNG-SNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSH 115
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,299,860
Number of Sequences: 539616
Number of extensions: 5188310
Number of successful extensions: 14159
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 13984
Number of HSP's gapped (non-prelim): 277
length of query: 302
length of database: 191,569,459
effective HSP length: 117
effective length of query: 185
effective length of database: 128,434,387
effective search space: 23760361595
effective search space used: 23760361595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)