Query psy4604
Match_columns 302
No_of_seqs 179 out of 392
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 21:11:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2512|consensus 100.0 3.7E-41 8E-46 312.0 10.6 265 11-297 17-297 (337)
2 PF07986 TBCC: Tubulin binding 100.0 6.4E-34 1.4E-38 234.6 10.3 104 196-299 1-104 (120)
3 KOG4416|consensus 99.5 2.3E-14 4.9E-19 139.3 8.3 124 176-299 314-438 (605)
4 PF07986 TBCC: Tubulin binding 98.7 8.9E-08 1.9E-12 78.9 8.7 95 176-275 3-98 (120)
5 KOG2512|consensus 98.6 5.7E-10 1.2E-14 104.7 -8.5 98 197-297 60-160 (337)
6 smart00673 CARP Domain in CAPs 98.3 1.4E-06 3E-11 57.3 4.8 38 204-241 1-38 (38)
7 PF08603 CAP_C: Adenylate cycl 97.8 4.8E-05 1E-09 65.9 6.2 106 176-282 12-123 (159)
8 smart00673 CARP Domain in CAPs 97.3 0.00026 5.6E-09 46.3 3.3 35 242-276 1-38 (38)
9 KOG2675|consensus 97.2 0.0024 5.2E-08 62.7 9.9 106 176-282 333-444 (480)
10 PF08603 CAP_C: Adenylate cycl 95.6 0.035 7.6E-07 48.1 6.5 92 176-270 34-127 (159)
11 KOG4416|consensus 94.5 0.089 1.9E-06 52.7 6.3 52 242-293 454-505 (605)
12 KOG2675|consensus 88.5 2.3 4.9E-05 42.4 8.3 51 198-249 374-425 (480)
13 PF05008 V-SNARE: Vesicle tran 80.6 21 0.00045 26.5 9.4 73 48-127 1-77 (79)
14 PF14712 Snapin_Pallidin: Snap 73.3 39 0.00085 25.8 9.1 74 41-126 5-79 (92)
15 PHA03161 hypothetical protein; 67.9 73 0.0016 27.4 9.8 74 40-127 32-105 (150)
16 KOG4460|consensus 65.4 58 0.0012 33.8 10.1 30 93-122 698-727 (741)
17 PF06705 SF-assemblin: SF-asse 54.7 1.7E+02 0.0036 26.8 10.7 79 40-124 60-141 (247)
18 COG1579 Zn-ribbon protein, pos 53.4 1.5E+02 0.0033 27.4 10.1 33 204-239 200-232 (239)
19 PF08317 Spc7: Spc7 kinetochor 53.2 2.1E+02 0.0046 27.3 11.6 42 77-119 250-291 (325)
20 PRK13182 racA polar chromosome 52.3 60 0.0013 28.6 6.9 54 74-127 88-141 (175)
21 PF08919 F_actin_bind: F-actin 52.1 22 0.00048 29.0 3.9 46 80-125 34-80 (110)
22 PF06657 Cep57_MT_bd: Centroso 50.5 1E+02 0.0022 23.4 7.2 52 76-127 22-73 (79)
23 KOG0804|consensus 46.3 59 0.0013 32.8 6.5 80 40-134 379-458 (493)
24 PF10146 zf-C4H2: Zinc finger- 43.0 2.7E+02 0.0058 25.6 11.0 73 40-126 29-103 (230)
25 PF10168 Nup88: Nuclear pore c 42.7 3.9E+02 0.0084 28.8 12.4 48 78-126 607-654 (717)
26 KOG1666|consensus 41.7 2.6E+02 0.0056 25.6 9.3 77 44-126 8-87 (220)
27 PF04048 Sec8_exocyst: Sec8 ex 41.6 2.1E+02 0.0045 23.9 9.1 17 44-60 41-57 (142)
28 PF05531 NPV_P10: Nucleopolyhe 41.3 1.6E+02 0.0034 22.4 7.1 46 82-127 15-65 (75)
29 PF10168 Nup88: Nuclear pore c 40.6 2.9E+02 0.0063 29.7 11.1 29 98-126 679-707 (717)
30 PF03978 Borrelia_REV: Borreli 40.3 1.7E+02 0.0037 25.4 7.6 64 47-123 22-85 (160)
31 PF10212 TTKRSYEDQ: Predicted 37.8 3.5E+02 0.0077 27.9 10.7 68 45-127 436-503 (518)
32 cd01751 PLAT_LH2 PLAT/ LH2 dom 34.7 85 0.0018 26.5 4.9 37 213-253 83-120 (137)
33 KOG3809|consensus 33.8 4.6E+02 0.01 26.7 10.4 81 40-127 469-562 (583)
34 PF11348 DUF3150: Protein of u 33.2 1.9E+02 0.0041 26.9 7.5 90 45-139 51-146 (257)
35 KOG1029|consensus 33.2 2.3E+02 0.0049 31.0 8.6 8 53-60 416-423 (1118)
36 KOG0971|consensus 32.6 6.3E+02 0.014 28.3 11.8 110 14-130 236-358 (1243)
37 TIGR00606 rad50 rad50. This fa 32.2 1.6E+02 0.0035 33.7 8.1 50 78-127 471-524 (1311)
38 KOG2417|consensus 32.1 3.4E+02 0.0073 27.0 9.0 68 30-114 215-283 (462)
39 PRK00965 tetrahydromethanopter 31.8 63 0.0014 25.8 3.4 43 98-140 25-69 (96)
40 PF13345 DUF4098: Domain of un 31.7 1.8E+02 0.0039 20.3 6.6 46 197-242 14-59 (76)
41 PF08654 DASH_Dad2: DASH compl 31.5 2.2E+02 0.0048 22.8 6.6 56 43-109 21-76 (103)
42 COG4477 EzrA Negative regulato 31.4 6.2E+02 0.013 26.4 12.4 122 1-134 241-378 (570)
43 PF13345 DUF4098: Domain of un 31.3 1.5E+02 0.0033 20.7 5.4 31 214-244 12-42 (76)
44 smart00808 FABD F-actin bindin 31.0 1.1E+02 0.0023 25.7 4.8 24 101-124 72-95 (126)
45 PF05440 MtrB: Tetrahydrometha 30.8 66 0.0014 25.7 3.4 40 101-140 27-68 (97)
46 COG1579 Zn-ribbon protein, pos 30.0 1.3E+02 0.0029 27.8 5.8 13 221-233 198-210 (239)
47 PF01923 Cob_adeno_trans: Coba 29.8 1.5E+02 0.0032 25.4 5.8 84 47-138 27-110 (163)
48 KOG3470|consensus 28.5 3.1E+02 0.0067 22.3 6.8 45 74-118 61-105 (107)
49 PF07544 Med9: RNA polymerase 27.5 2.8E+02 0.006 21.1 7.1 55 71-127 21-75 (83)
50 PF05531 NPV_P10: Nucleopolyhe 26.7 2.2E+02 0.0048 21.6 5.5 51 47-101 15-65 (75)
51 PRK09039 hypothetical protein; 26.1 4.4E+02 0.0095 25.5 8.9 44 77-125 143-186 (343)
52 PF14523 Syntaxin_2: Syntaxin- 25.9 3E+02 0.0066 21.0 9.1 54 46-104 6-59 (102)
53 PF07361 Cytochrom_B562: Cytoc 25.8 2.5E+02 0.0053 22.3 6.0 47 80-126 23-75 (103)
54 PF14282 FlxA: FlxA-like prote 25.7 3.1E+02 0.0066 21.9 6.6 48 77-127 18-67 (106)
55 COG1570 XseA Exonuclease VII, 25.7 6.6E+02 0.014 25.5 10.2 63 40-123 303-365 (440)
56 PF11180 DUF2968: Protein of u 24.8 5.1E+02 0.011 23.2 8.7 27 76-102 166-192 (192)
57 KOG0976|consensus 24.6 8.2E+02 0.018 27.1 10.9 48 234-282 748-795 (1265)
58 TIGR01541 tape_meas_lam_C phag 24.5 6.5E+02 0.014 24.3 12.0 46 78-123 86-131 (332)
59 PF05149 Flagellar_rod: Parafl 23.6 6.5E+02 0.014 24.0 11.3 46 15-60 72-122 (289)
60 PF09731 Mitofilin: Mitochondr 23.1 8.3E+02 0.018 25.0 11.5 51 72-128 372-422 (582)
61 PRK13411 molecular chaperone D 23.0 7.7E+02 0.017 25.9 10.7 44 78-126 555-598 (653)
62 PF03962 Mnd1: Mnd1 family; I 22.9 3.9E+02 0.0084 23.6 7.3 22 74-95 106-127 (188)
63 PLN02939 transferase, transfer 22.6 4.2E+02 0.0091 29.6 8.8 73 46-122 296-369 (977)
64 KOG1446|consensus 22.4 4.9E+02 0.011 25.1 8.2 90 199-288 62-161 (311)
65 PF00804 Syntaxin: Syntaxin; 22.0 3.4E+02 0.0074 20.2 8.6 17 44-60 1-17 (103)
66 PLN02939 transferase, transfer 21.9 6E+02 0.013 28.5 9.7 73 45-126 326-398 (977)
67 KOG3859|consensus 21.9 4E+02 0.0087 25.8 7.4 15 11-25 328-342 (406)
68 PRK00290 dnaK molecular chaper 21.9 7.1E+02 0.015 25.9 10.1 41 78-125 553-593 (627)
69 KOG1029|consensus 21.8 7.6E+02 0.016 27.2 10.0 27 109-135 484-514 (1118)
70 PRK04778 septation ring format 21.4 9.1E+02 0.02 24.9 11.6 85 44-139 166-253 (569)
71 COG3883 Uncharacterized protei 20.8 7.1E+02 0.015 23.5 9.3 61 44-123 39-99 (265)
72 KOG0994|consensus 20.6 1.2E+03 0.026 27.1 11.5 115 12-126 1422-1554(1758)
73 PF02495 7kD_coat: 7kD viral c 20.2 1.1E+02 0.0024 21.7 2.7 18 205-224 25-42 (59)
74 COG1196 Smc Chromosome segrega 20.0 1.2E+03 0.025 26.5 11.9 51 41-98 230-280 (1163)
No 1
>KOG2512|consensus
Probab=100.00 E-value=3.7e-41 Score=311.95 Aligned_cols=265 Identities=31% Similarity=0.413 Sum_probs=217.7
Q ss_pred cCChHHHHHHHHHHHHHHHHHHH---hhhcccchHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHH
Q psy4604 11 EVNIPERLLKREQERISAIEKRQ---EKKGDKEHDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQI 87 (302)
Q Consensus 11 ~~~~~erl~~r~~~R~~~~~~~r---~~~~~~~~~~F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i 87 (302)
+-.|+|||.+|+++|++..+.+. .....+++++|..+|..+..+||++|+.- ..+...++++...|
T Consensus 17 ~~~~~erl~kr~~drr~~v~~~~~~~s~~k~Es~~~f~~tf~~~t~~ie~~l~~~-----------~~l~~~l~e~tv~I 85 (337)
T KOG2512|consen 17 KKNELERLKKRSWDRREKVDPKDRSNSTLKKESVDRFPATFAGSTADIEERLNEN-----------EYLERFLEEATVTI 85 (337)
T ss_pred hhhhhcccchhhhhhhhcCChhhhhhhhhhhhhhhhhhHhHhccchhHHHHHHHH-----------HHHHHHHHHhHhHH
Confidence 35599999999999999987766 12222399999999999999999999841 22345789999999
Q ss_pred HHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCcccCCCCCCCCcchhhc------CCCCC
Q psy4604 88 LLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRKKFGFKKVDKVKLGGQGDKTDEAEKK------ILPKD 161 (302)
Q Consensus 88 ~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~~~~pkkKF~Fk~k~~~~~~~~~~~~~~~~~~------~~~~~ 161 (302)
..|++.+++..+|||+|+.|.|++.+..|...+...|..++|||+|.|+...+-. +.+++ ..+..
T Consensus 86 ddl~~~l~~~~~fl~sy~vR~c~~~l~~Lt~~l~~~R~dl~pkk~F~f~~t~~~v---------kSStki~fa~~~Pe~k 156 (337)
T KOG2512|consen 86 DDLTRCLIELGPFLGSYFVRSCQNCLCTLTCQLDRTRHDLLPKKKFLFCATGPIV---------KSSTKIKFAPYYPELK 156 (337)
T ss_pred HHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhcccccceeeeccCCccc---------ccccccccccCCCcch
Confidence 9999999999999999999999999999999999999999999999999754310 11111 00111
Q ss_pred CCCCCCCCC----CCCC---ceeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEcccc
Q psy4604 162 DVDFVKPRQ----HEEE---TYIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVS 234 (302)
Q Consensus 162 ~~~~~~~~~----~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~ 234 (302)
+...+.+-+ ...+ -.+...|..+.++. .+.+...+++++.|.+|.|.|.|+++++++++.++|.+++||+.
T Consensus 157 ~~~~dapl~~f~ndl~pv~~~~~~~~n~e~~vl~--~p~~~~~~~~~~~l~~c~v~l~g~~~a~~l~ratkcs~l~~p~~ 234 (337)
T KOG2512|consen 157 DQIKDAPLSKFPNDLGPVSGWTPANRNPEDNVLV--VPEVTQEEVTASELSSCAVRLIGPPSAVFLHRATKCSLLCGPFA 234 (337)
T ss_pred hhhhhCCCccCCccccccccccccccCCCCceEE--cCCcccchhhHHHhhhcceeEecCCCcceeccccccccccCcee
Confidence 111111111 1111 14455666666666 55577899999999999999999999999999999999999999
Q ss_pred ceEEEEcCCCCeEEEEeceEeeccceeeeEEEEecCCcEEecCCCcEEeeCCCCChhHHHhhh
Q psy4604 235 NSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAPAVNIDPVLLQLSS 297 (302)
Q Consensus 235 Gsv~i~~c~n~~i~~~c~QlRih~~~n~~~yl~~~s~pIIEdC~~i~f~py~~~Y~~l~~~l~ 297 (302)
||+|++||.+|++.++|||||+|.+++++||++|+++||||||++|.|+||.+.||+|+.++-
T Consensus 235 gsi~~~d~~D~~l~~ac~qlrlh~tk~~rv~l~~~~r~iiedsk~i~Fapy~~~~p~i~~d~~ 297 (337)
T KOG2512|consen 235 GSIFISDAEDCTLEVACHQLRLHSTKEVRVYLRVTSRPIIEDSKGIDFAPYLNDYPVIDLDFN 297 (337)
T ss_pred eeeeccchHHHHHHHHHhheeeEeeccceEEEEecccceeecccCCcchhhhhcCchhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999988765
No 2
>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC). TBCC is a folding cofactor that participates in tubulin biogenesis along with the other tubulin folding cofactors A (TBCA), B (TBCB), E (TBCE) and D (TBCD), as well as the GTP-binding protein Arl2 [, ].; PDB: 2BX6_A 3BH7_B 3BH6_B 2YUH_A.
Probab=100.00 E-value=6.4e-34 Score=234.64 Aligned_cols=104 Identities=44% Similarity=0.782 Sum_probs=86.3
Q ss_pred CCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEeceEeeccceeeeEEEEecCCcEEe
Q psy4604 196 KKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIE 275 (302)
Q Consensus 196 ~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~QlRih~~~n~~~yl~~~s~pIIE 275 (302)
|.++.|+||++|+|++.+++++++|+||+||+|++|||.|||+|++|.||+|+++|+|||+|+|+||.||++++++||||
T Consensus 1 g~~~~i~n~~~c~I~l~~~~~~v~i~~~~~c~i~~g~v~gsv~i~~c~n~~i~~~~~QlRih~~~n~~~~l~~~s~piIE 80 (120)
T PF07986_consen 1 GSDVTISNCSNCTIYLLDPLSSVHIDNCKNCTIVLGPVSGSVFIENCENCTIIVACRQLRIHNSTNCTFYLHTNSRPIIE 80 (120)
T ss_dssp T-EEEEES-BS-EEEE-S-BS-EEEES-BS-EEEEEEECCEEEEES-ECEEEEEEECEEEEES-ECEEEEEEESSEEEEE
T ss_pred CCcEEEecCcCCEEEeCCCcceEEEeCCCCCEEEEeecCceEEEecCCceEEEEEcCCeEEccccceEEEEECCCCcEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEeeCCCCChhHHHhhhcc
Q psy4604 276 HCKNIGFAPAVNIDPVLLQLSSTT 299 (302)
Q Consensus 276 dC~~i~f~py~~~Y~~l~~~l~~~ 299 (302)
+|++|+||||+..||++++||...
T Consensus 81 ~~~~i~fapy~~~y~~l~~~l~~~ 104 (120)
T PF07986_consen 81 DCTGITFAPYNTHYPNLEEHLQRA 104 (120)
T ss_dssp S-ECEEEEE---B-TTCHHHHHHC
T ss_pred CCCCCEEEeCcccCcCHHHHHHHc
Confidence 999999999999999999998753
No 3
>KOG4416|consensus
Probab=99.52 E-value=2.3e-14 Score=139.34 Aligned_cols=124 Identities=18% Similarity=0.293 Sum_probs=117.3
Q ss_pred eeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEeceEe
Q psy4604 176 YIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLR 255 (302)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~QlR 255 (302)
.+.+.+...+++.++.....+.++.|-||.++.|||..++.++.+..|.|+++++|++...+.+++|++..++++|+-|-
T Consensus 314 ~~~~~gV~k~Sl~k~a~~lkg~sVkv~~Cnes~iyLl~plr~~tv~~c~~s~~Vlg~agkt~~~h~c~rV~vi~~~~Ri~ 393 (605)
T KOG4416|consen 314 PCNIEGVSKTSLIKQASDLKGRSVKVPNCNESVIYLLAPLRYATVFGCSDSTIVLGAAGKTTKVHHCERVHVIVAIKRIC 393 (605)
T ss_pred ccccccccccccccchhhhccceeeecccchhhhhhhcCcceeeeeccCCceEEEecccceeeeccccceEEEEEeeeEE
Confidence 56777788888999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccceeeeEEEEecCCcEE-ecCCCcEEeeCCCCChhHHHhhhcc
Q psy4604 256 MHTSHKCSVYLHVTSRPII-EHCKNIGFAPAVNIDPVLLQLSSTT 299 (302)
Q Consensus 256 ih~~~n~~~yl~~~s~pII-EdC~~i~f~py~~~Y~~l~~~l~~~ 299 (302)
|-+|+.|.||+.|.+||.| .+-..++|+||+..|+-|++||.+.
T Consensus 394 I~~~~ecvff~~v~~Rpli~~~n~~~~faP~~t~y~~Le~hM~~~ 438 (605)
T KOG4416|consen 394 IANCRECVFFLGVNQRPLIVGDNHKLQFAPYNTFYSHLEEHMYEV 438 (605)
T ss_pred EecccceEEEeccCcceeeecCCceEEEeccccchHHHHHHHHhh
Confidence 9999999999999999955 7999999999999999999999764
No 4
>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC). TBCC is a folding cofactor that participates in tubulin biogenesis along with the other tubulin folding cofactors A (TBCA), B (TBCB), E (TBCE) and D (TBCD), as well as the GTP-binding protein Arl2 [, ].; PDB: 2BX6_A 3BH7_B 3BH6_B 2YUH_A.
Probab=98.69 E-value=8.9e-08 Score=78.89 Aligned_cols=95 Identities=21% Similarity=0.289 Sum_probs=69.9
Q ss_pred eeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEec-eE
Q psy4604 176 YIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACH-QL 254 (302)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~-Ql 254 (302)
.+.++|.++-+|.+.. ..+.+.|.||+||+|.+....|+++|.+|.||+|++. .+.+.|++|.||.|++.+. .-
T Consensus 3 ~~~i~n~~~c~I~l~~---~~~~v~i~~~~~c~i~~g~v~gsv~i~~c~n~~i~~~--~~QlRih~~~n~~~~l~~~s~p 77 (120)
T PF07986_consen 3 DVTISNCSNCTIYLLD---PLSSVHIDNCKNCTIVLGPVSGSVFIENCENCTIIVA--CRQLRIHNSTNCTFYLHTNSRP 77 (120)
T ss_dssp EEEEES-BS-EEEE-S----BS-EEEES-BS-EEEEEEECCEEEEES-ECEEEEEE--ECEEEEES-ECEEEEEEESSEE
T ss_pred cEEEecCcCCEEEeCC---CcceEEEeCCCCCEEEEeecCceEEEecCCceEEEEE--cCCeEEccccceEEEEECCCCc
Confidence 4678899998888743 2578999999999999977779999999999999864 6899999999999999766 67
Q ss_pred eeccceeeeEEEEecCCcEEe
Q psy4604 255 RMHTSHKCSVYLHVTSRPIIE 275 (302)
Q Consensus 255 Rih~~~n~~~yl~~~s~pIIE 275 (302)
.|.+|+++.|.=+...-|-+|
T Consensus 78 iIE~~~~i~fapy~~~y~~l~ 98 (120)
T PF07986_consen 78 IIEDCTGITFAPYNTHYPNLE 98 (120)
T ss_dssp EEES-ECEEEEE---B-TTCH
T ss_pred EEeCCCCCEEEeCcccCcCHH
Confidence 789999999998766666554
No 5
>KOG2512|consensus
Probab=98.57 E-value=5.7e-10 Score=104.66 Aligned_cols=98 Identities=20% Similarity=0.329 Sum_probs=83.1
Q ss_pred CCeEEecccccEEEec--CCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEeceEeec-cceeeeEEEEecCCcE
Q psy4604 197 KPVSLSNIDSCVVKVN--GNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMH-TSHKCSVYLHVTSRPI 273 (302)
Q Consensus 197 ~~~~i~nl~~c~V~l~--~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~QlRih-~~~n~~~yl~~~s~pI 273 (302)
....|+.+.+|..+|. -...++.|.||++|++.+||.-||+++.+|.||+.-+.|+|+|+. +|.--..|+.+++.||
T Consensus 60 ~t~~ie~~l~~~~~l~~~l~e~tv~Iddl~~~l~~~~~fl~sy~vR~c~~~l~~Lt~~l~~~R~dl~pkk~F~f~~t~~~ 139 (337)
T KOG2512|consen 60 STADIEERLNENEYLERFLEEATVTIDDLTRCLIELGPFLGSYFVRSCQNCLCTLTCQLDRTRHDLLPKKKFLFCATGPI 139 (337)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhcccccceeeeccCCcc
Confidence 3444555555555533 244799999999999999999999999999999999999999988 9999999999999999
Q ss_pred EecCCCcEEeeCCCCChhHHHhhh
Q psy4604 274 IEHCKNIGFAPAVNIDPVLLQLSS 297 (302)
Q Consensus 274 IEdC~~i~f~py~~~Y~~l~~~l~ 297 (302)
+|.+++|.|+|| ||.+.+++.
T Consensus 140 vkSStki~fa~~---~Pe~k~~~~ 160 (337)
T KOG2512|consen 140 VKSSTKIKFAPY---YPELKDQIK 160 (337)
T ss_pred cccccccccccC---CCcchhhhh
Confidence 999999999776 777766553
No 6
>smart00673 CARP Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product.
Probab=98.29 E-value=1.4e-06 Score=57.31 Aligned_cols=38 Identities=42% Similarity=0.725 Sum_probs=36.1
Q ss_pred ccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEc
Q psy4604 204 IDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDN 241 (302)
Q Consensus 204 l~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~ 241 (302)
|++|.|++.|.+.+++|++|++|.|+++|+.++++|.+
T Consensus 1 C~~~~i~v~g~~~~v~id~~~~~~i~l~~~~~s~~i~~ 38 (38)
T smart00673 1 CESCTIQVSGKVNTISIDKCKKCSIYLGPVSGSPEIVN 38 (38)
T ss_pred CCcEEEEEeCccCEEEEECCCCeEEEECCceeEEEEEC
Confidence 68999999999999999999999999999999999875
No 7
>PF08603 CAP_C: Adenylate cyclase associated (CAP) C terminal; InterPro: IPR013912 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the C-terminal domain of CAP proteins, which is responsible for G-actin-binding. This domain has a superhelical structure, where the superhelix turns are made of two beta-strands each []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1K4Z_B 1KQ5_A 2B0R_A 1K8F_B.
Probab=97.79 E-value=4.8e-05 Score=65.87 Aligned_cols=106 Identities=19% Similarity=0.356 Sum_probs=78.1
Q ss_pred eeeEecccCcE-EecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEE--Eec
Q psy4604 176 YIGFYNRSNET-LELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYL--ACH 252 (302)
Q Consensus 176 ~~~~~~~~~~~-i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~--~c~ 252 (302)
.+.+.+..|.. +.+... .....+.|.+|.||+|.+.|...++.|.+|++|.+++..+-+++-+-+|.++.+.+ .|.
T Consensus 12 kW~Ve~~~~~~~~~~~~~-~~~qsVyI~~C~n~~i~IkgKvnsItid~C~k~~vv~ds~Is~vEvinc~~~~vQv~g~vP 90 (159)
T PF08603_consen 12 KWFVENQENNKELVIEEV-EMKQSVYIYNCKNSTIQIKGKVNSITIDNCKKCSVVFDSVISSVEVINCKSVQVQVLGKVP 90 (159)
T ss_dssp EEEEECEBS-SSEEEEE---TT-EEEEEEEESEEEEEESEBSEEEEEEEEEEEEEECEBSSEEEEESEEEEEEEESS--S
T ss_pred EEEEEeccCCCCceEecc-CCCcEEEEEcccccEEEECceEEEEEEEcCCcEEEEEcCEEEEEEEEecCcEeEEEEccCC
Confidence 56666666654 433322 23578999999999999999999999999999999999888999999999999888 577
Q ss_pred eEeeccceeeeEEEEecC--CcEE-ecCCCcEE
Q psy4604 253 QLRMHTSHKCSVYLHVTS--RPII-EHCKNIGF 282 (302)
Q Consensus 253 QlRih~~~n~~~yl~~~s--~pII-EdC~~i~f 282 (302)
-+-+-.|.+|.+||.-.+ .-|+ --|+.|-+
T Consensus 91 ti~iDktdg~~iyLsk~s~~~eivtskss~mNv 123 (159)
T PF08603_consen 91 TISIDKTDGCQIYLSKESLDTEIVTSKSSEMNV 123 (159)
T ss_dssp EEEEES-EEEEEE--CCCTT-EEEEES-EEEEE
T ss_pred EEEEeccccEEEEECcccccEEEEEEccccEEE
Confidence 899999999999998654 2344 35555443
No 8
>smart00673 CARP Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product.
Probab=97.31 E-value=0.00026 Score=46.34 Aligned_cols=35 Identities=29% Similarity=0.664 Sum_probs=30.9
Q ss_pred CCCCeEEEE--eceEeeccceeeeEEEE-ecCCcEEec
Q psy4604 242 CTDSTLYLA--CHQLRMHTSHKCSVYLH-VTSRPIIEH 276 (302)
Q Consensus 242 c~n~~i~~~--c~QlRih~~~n~~~yl~-~~s~pIIEd 276 (302)
|.||.+.+. |++++||+|.+|.||+. +.+.+.|++
T Consensus 1 C~~~~i~v~g~~~~v~id~~~~~~i~l~~~~~s~~i~~ 38 (38)
T smart00673 1 CESCTIQVSGKVNTISIDKCKKCSIYLGPVSGSPEIVN 38 (38)
T ss_pred CCcEEEEEeCccCEEEEECCCCeEEEECCceeEEEEEC
Confidence 789999998 99999999999999998 667777764
No 9
>KOG2675|consensus
Probab=97.19 E-value=0.0024 Score=62.74 Aligned_cols=106 Identities=19% Similarity=0.359 Sum_probs=80.2
Q ss_pred eeeEecccCc-EEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEe--c
Q psy4604 176 YIGFYNRSNE-TLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLAC--H 252 (302)
Q Consensus 176 ~~~~~~~~~~-~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c--~ 252 (302)
.+.+.|..|. .+++... -....+.|-.|+||+|.|.|..-++.|+||+.|-|++-.+=|.+-|-||.+..|.+.- .
T Consensus 333 kW~VEnq~~~~~~Vi~~~-e~kqsvyIykC~~s~iqIkGKvNsItld~Ckk~svVfD~~Va~~eiinc~~v~iQv~g~~P 411 (480)
T KOG2675|consen 333 KWRVENQENNKNLVIDDA-ELKQSVYIYKCSNSTIQIKGKVNSITLDNCKKTSVVFDDLVAIVEIINCQDVQIQVMGSVP 411 (480)
T ss_pred eEEEeeecCCcceeeeec-cccceEEEEeccceEEEEeceeeeEEecCCceeeEEEeccceeeEEeeccceeeEEcccCC
Confidence 4445544443 3444332 2356899999999999999999999999999999999888888999999999888854 4
Q ss_pred eEeeccceeeeEEEEecC--CcEE-ecCCCcEE
Q psy4604 253 QLRMHTSHKCSVYLHVTS--RPII-EHCKNIGF 282 (302)
Q Consensus 253 QlRih~~~n~~~yl~~~s--~pII-EdC~~i~f 282 (302)
+|-|..+.+|.+||.-.+ --|. -.++.|-+
T Consensus 412 tiSI~ktdGc~iYLSk~sL~~eIvtsKSsemNi 444 (480)
T KOG2675|consen 412 TISIDKTDGCHIYLSKDSLDCEIVTSKSSEMNI 444 (480)
T ss_pred eEEEecCCCeeEEeccccccceEEeecccceeE
Confidence 999999999999997432 2244 34444443
No 10
>PF08603 CAP_C: Adenylate cyclase associated (CAP) C terminal; InterPro: IPR013912 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the C-terminal domain of CAP proteins, which is responsible for G-actin-binding. This domain has a superhelical structure, where the superhelix turns are made of two beta-strands each []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1K4Z_B 1KQ5_A 2B0R_A 1K8F_B.
Probab=95.62 E-value=0.035 Score=48.14 Aligned_cols=92 Identities=20% Similarity=0.328 Sum_probs=69.6
Q ss_pred eeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEE--ece
Q psy4604 176 YIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLA--CHQ 253 (302)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~--c~Q 253 (302)
...|.+-.|.+|.+.. ....++|.+|++|.|.+.+..+++-+-||.++.|-+--.-..|.|+.|.+|.|++. +..
T Consensus 34 sVyI~~C~n~~i~Ikg---KvnsItid~C~k~~vv~ds~Is~vEvinc~~~~vQv~g~vPti~iDktdg~~iyLsk~s~~ 110 (159)
T PF08603_consen 34 SVYIYNCKNSTIQIKG---KVNSITIDNCKKCSVVFDSVISSVEVINCKSVQVQVLGKVPTISIDKTDGCQIYLSKESLD 110 (159)
T ss_dssp EEEEEEEESEEEEEES---EBSEEEEEEEEEEEEEECEBSSEEEEESEEEEEEEESS--SEEEEES-EEEEEE--CCCTT
T ss_pred EEEEEcccccEEEECc---eEEEEEEEcCCcEEEEEcCEEEEEEEEecCcEeEEEEccCCEEEEeccccEEEEECccccc
Confidence 6778888888888764 35789999999999999999999999999999988644446799999999999996 445
Q ss_pred EeeccceeeeEEEEecC
Q psy4604 254 LRMHTSHKCSVYLHVTS 270 (302)
Q Consensus 254 lRih~~~n~~~yl~~~s 270 (302)
..+..+....+.+++..
T Consensus 111 ~eivtskss~mNv~~p~ 127 (159)
T PF08603_consen 111 TEIVTSKSSEMNVNVPD 127 (159)
T ss_dssp -EEEEES-EEEEEEEEC
T ss_pred EEEEEEccccEEEEecC
Confidence 56666666666666654
No 11
>KOG4416|consensus
Probab=94.45 E-value=0.089 Score=52.66 Aligned_cols=52 Identities=19% Similarity=0.168 Sum_probs=37.6
Q ss_pred CCCCeEEEEeceEeeccceeeeEEEEecCCcEEecCCCcEEeeCCCCChhHH
Q psy4604 242 CTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAPAVNIDPVLL 293 (302)
Q Consensus 242 c~n~~i~~~c~QlRih~~~n~~~yl~~~s~pIIEdC~~i~f~py~~~Y~~l~ 293 (302)
|.--.+-..|||+=+.++.+..+|---.-.|||=+..-+.|.|||..|.|-.
T Consensus 454 c~~~~~~~~~~~~~vsDsq~~~~~~~~P~~~~~~~s~~v~~iPF~~e~eG~t 505 (605)
T KOG4416|consen 454 CASDPHDSLSHPLGVSDSQAEEAYAVDPDKPIIFNSFTVFFIPFNGEYEGST 505 (605)
T ss_pred cccCccccccccccccccccccceecCCCCceeeeeeEEEEeeccchhcccc
Confidence 3333344445566666666766777667789999999999999999998753
No 12
>KOG2675|consensus
Probab=88.49 E-value=2.3 Score=42.43 Aligned_cols=51 Identities=24% Similarity=0.419 Sum_probs=24.1
Q ss_pred CeEEecccccEEEecCCcCeEEEeccCCCEEEE-ccccceEEEEcCCCCeEEE
Q psy4604 198 PVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFL-GPVSNSVFIDNCTDSTLYL 249 (302)
Q Consensus 198 ~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~-gpv~Gsv~i~~c~n~~i~~ 249 (302)
.++|.||+.|-|.+.+..+.+-|-||.+-.|-+ |.+. .|.|+.|..|.|++
T Consensus 374 sItld~Ckk~svVfD~~Va~~eiinc~~v~iQv~g~~P-tiSI~ktdGc~iYL 425 (480)
T KOG2675|consen 374 SITLDNCKKTSVVFDDLVAIVEIINCQDVQIQVMGSVP-TISIDKTDGCHIYL 425 (480)
T ss_pred eEEecCCceeeEEEeccceeeEEeeccceeeEEcccCC-eEEEecCCCeeEEe
Confidence 445555555555555444555555555444432 2222 24455555555554
No 13
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=80.64 E-value=21 Score=26.52 Aligned_cols=73 Identities=16% Similarity=0.305 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCch----hhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHH
Q psy4604 48 FNENYDKIKGMINEIDVDPNSGSVNK----EELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNIL 123 (302)
Q Consensus 48 F~~~~~~ie~~l~~~~~~~~~~~~~~----~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~ 123 (302)
|..-.+.|...|.++. ...+.++ ......|+++..-|..|.-++.. +|+=+...|...|......+..+
T Consensus 1 f~~l~~~i~~~l~~~~---~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~----~p~s~r~~~~~kl~~yr~~l~~l 73 (79)
T PF05008_consen 1 FQALTAEIKSKLERIK---NLSGEQRKSLIREIERDLDEAEELLKQMELEVRS----LPPSERNQYKSKLRSYRSELKKL 73 (79)
T ss_dssp HHHHHHHHHHHHHHGG---GS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT----S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhh---ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666778888888763 1111121 22233444445555555555443 59889999999999999999887
Q ss_pred Hhhc
Q psy4604 124 ETKL 127 (302)
Q Consensus 124 r~~~ 127 (302)
+..+
T Consensus 74 k~~l 77 (79)
T PF05008_consen 74 KKEL 77 (79)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7643
No 14
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=73.25 E-value=39 Score=25.85 Aligned_cols=74 Identities=20% Similarity=0.452 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccc-hhhHHHHHHHHHHHHHH
Q psy4604 41 HDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLT-SYDMKIYNNKLQELTEQ 119 (302)
Q Consensus 41 ~~~F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~das~~Lp-~YD~r~~~~~l~~L~~~ 119 (302)
++.|+..|.-....+++.|..+ . . ....+...++....++.++.... .++ +||.-.|...|..+.+.
T Consensus 5 a~Gl~~~l~P~l~~~~~~l~el----~-~--sQ~~L~~~i~~~~~~L~~~~~~~-----~~~~~~~~~~y~~KL~~ikkr 72 (92)
T PF14712_consen 5 AEGLLSLLEPDLDRLDQQLQEL----R-Q--SQEELLQQIDRLNEKLKELNEVE-----QINEPFDLDPYVKKLVNIKKR 72 (92)
T ss_pred HHHHHHHHhhhHHHHHHHHHHH----H-H--HHHHHHHHHHHHHHHHHHHHHhh-----hhhhHHHhhHHHHHHHHHHHH
Confidence 3567888888888888888754 1 1 12233334444444443333321 233 56666677777777777
Q ss_pred HHHHHhh
Q psy4604 120 CNILETK 126 (302)
Q Consensus 120 l~~~r~~ 126 (302)
+......
T Consensus 73 m~~l~~~ 79 (92)
T PF14712_consen 73 MSNLHER 79 (92)
T ss_pred HHHHHHH
Confidence 7665443
No 15
>PHA03161 hypothetical protein; Provisional
Probab=67.92 E-value=73 Score=27.44 Aligned_cols=74 Identities=9% Similarity=0.160 Sum_probs=53.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHH
Q psy4604 40 EHDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQ 119 (302)
Q Consensus 40 ~~~~F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~ 119 (302)
...-|..+|......+...=. + . ....+..-+..+...|...++++.- |+.||.++.. .+.+|+..
T Consensus 32 ~s~lF~~Qf~~t~~~lr~~~~-~------~--~~~~i~~~v~~l~~~I~~k~kE~~~----L~~fd~kkl~-~~E~L~dr 97 (150)
T PHA03161 32 KNCIFLHQLDHTKKSLIKHEN-L------K--KQKSIEGMLQAVDLSIQEKKKELSL----LKAFDRHKLS-AAEDLQDK 97 (150)
T ss_pred ccHHHHHHHHHHHHHHHHHHH-H------H--HHHHHHHHHHHHHHHHHHHHHHHHH----HhhcCHHHHH-HHHHHHHH
Confidence 777899999998877764311 1 0 1133456677778888888888876 8899998874 68888888
Q ss_pred HHHHHhhc
Q psy4604 120 CNILETKL 127 (302)
Q Consensus 120 l~~~r~~~ 127 (302)
+.++++.+
T Consensus 98 v~eLkeel 105 (150)
T PHA03161 98 ILELKEDI 105 (150)
T ss_pred HHHHHHHH
Confidence 88888764
No 16
>KOG4460|consensus
Probab=65.40 E-value=58 Score=33.84 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=24.6
Q ss_pred HHHhhccccchhhHHHHHHHHHHHHHHHHH
Q psy4604 93 VIVDAKIFLTSYDMKIYNNKLQELTEQCNI 122 (302)
Q Consensus 93 ~v~das~~Lp~YD~r~~~~~l~~L~~~l~~ 122 (302)
.+....+.||.|-++..++.|++|...+.+
T Consensus 698 al~K~~Y~l~~~Q~~~iqsiL~~L~~~i~~ 727 (741)
T KOG4460|consen 698 ALPKPTYILSAYQRKCIQSILKELGEHIRE 727 (741)
T ss_pred hccCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 334457899999999999999999888755
No 17
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=54.68 E-value=1.7e+02 Score=26.76 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHH---HHHHHHHH
Q psy4604 40 EHDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKI---YNNKLQEL 116 (302)
Q Consensus 40 ~~~~F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~---~~~~l~~L 116 (302)
....+...|......+++.+... ...-...+...++.+..++..|...+.+-...+|...-.. ....|..|
T Consensus 60 ~~~~lq~~~e~~i~~~~~~v~~~------~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l 133 (247)
T PF06705_consen 60 SNKKLQSKFEEQINNMQERVENQ------ISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNEL 133 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34456777777777777666532 1111234567889999999999999998888888766554 45566666
Q ss_pred HHHHHHHH
Q psy4604 117 TEQCNILE 124 (302)
Q Consensus 117 ~~~l~~~r 124 (302)
...++.-+
T Consensus 134 ~~~~~~Er 141 (247)
T PF06705_consen 134 QEAFENER 141 (247)
T ss_pred HHHHHHHH
Confidence 66665443
No 18
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=53.38 E-value=1.5e+02 Score=27.40 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=19.2
Q ss_pred ccccEEEecCCcCeEEEeccCCCEEEEccccceEEE
Q psy4604 204 IDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFI 239 (302)
Q Consensus 204 l~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i 239 (302)
|..|.+.|....-+-. .+ .|.+|+|+.| |.|.+
T Consensus 200 C~GC~m~l~~~~~~~V-~~-~d~iv~CP~C-gRILy 232 (239)
T COG1579 200 CGGCHMKLPSQTLSKV-RK-KDEIVFCPYC-GRILY 232 (239)
T ss_pred ccCCeeeecHHHHHHH-hc-CCCCccCCcc-chHHH
Confidence 8888888865432222 22 7777776443 55543
No 19
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=53.15 E-value=2.1e+02 Score=27.31 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHH
Q psy4604 77 KEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQ 119 (302)
Q Consensus 77 ~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~ 119 (302)
.+...++.++|+++++.+.....+ +.+|+......++.|+..
T Consensus 250 ~~~k~~l~~eI~e~~~~~~~~r~~-t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 250 EEQKQELLAEIAEAEKIREECRGW-TRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444333 455555555555554443
No 20
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=52.31 E-value=60 Score=28.55 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhc
Q psy4604 74 EELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKL 127 (302)
Q Consensus 74 ~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~~~ 127 (302)
..+..+++.+.++|++|+..++.-.+.+-+|..=+....|+++.+.|+.+.+.+
T Consensus 88 ~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~ 141 (175)
T PRK13182 88 EQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARL 141 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 455778899999999999999999999999999999999999999998887654
No 21
>PF08919 F_actin_bind: F-actin binding; InterPro: IPR015015 The F-actin binding domain forms a compact bundle of four antiparallel alpha-helices, which are arranged in a left-handed topology. Binding of F-actin to the F-actin binding domain may result in cytoplasmic retention and subcellular distribution of the protein, as well as possible inhibition of protein function []. ; GO: 0004715 non-membrane spanning protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1ZZP_A 2KK1_A.
Probab=52.11 E-value=22 Score=29.02 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhcc-ccchhhHHHHHHHHHHHHHHHHHHHh
Q psy4604 80 FADINKQILLLNHVIVDAKI-FLTSYDMKIYNNKLQELTEQCNILET 125 (302)
Q Consensus 80 l~~i~~~i~~L~~~v~das~-~Lp~YD~r~~~~~l~~L~~~l~~~r~ 125 (302)
.-.+...+..|..+...... ..|+.-.=.+.+.|..|+....++|.
T Consensus 34 ~~qL~D~~~~l~~~C~~yaD~~~~p~~KF~FREllsrLE~~~rqLr~ 80 (110)
T PF08919_consen 34 WSQLSDKLQQLHSSCSGYADSIIQPHAKFAFRELLSRLESQSRQLRS 80 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG-S-CCCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcCcchhhhHHHHHHHHHHHHHHHHh
Confidence 34455555555555554444 66666666666666666666666654
No 22
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=50.51 E-value=1e+02 Score=23.42 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhc
Q psy4604 76 LKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKL 127 (302)
Q Consensus 76 ~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~~~ 127 (302)
+.+.|+++.-..++|+..++.-...+..-..+.....|+.|.+.++.+-.++
T Consensus 22 LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI 73 (79)
T PF06657_consen 22 LQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQI 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777767766566666666777788888888888876553
No 23
>KOG0804|consensus
Probab=46.26 E-value=59 Score=32.82 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=46.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHH
Q psy4604 40 EHDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQ 119 (302)
Q Consensus 40 ~~~~F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~ 119 (302)
....=..+|+.+.+.++.++..+ . . ....+.+..+.-..++.+++....++ + +.+.++|.+|+++
T Consensus 379 ~~e~k~~q~q~k~~k~~kel~~~----~--E-~n~~l~knq~vw~~kl~~~~e~~~~~---~-----~s~d~~I~dLqEQ 443 (493)
T KOG0804|consen 379 IVERKLQQLQTKLKKCQKELKEE----R--E-ENKKLIKNQDVWRGKLKELEEREKEA---L-----GSKDEKITDLQEQ 443 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----H--H-HHHHHHhhHHHHHHHHHHHHHHHHHH---H-----HHHHHHHHHHHHH
Confidence 44445677888888887777632 1 0 11233444455555555555555543 2 3345788888888
Q ss_pred HHHHHhhcCCCCCcc
Q psy4604 120 CNILETKLLPRKKFG 134 (302)
Q Consensus 120 l~~~r~~~~pkkKF~ 134 (302)
|..+---+-..+||.
T Consensus 444 lrDlmf~le~qqklk 458 (493)
T KOG0804|consen 444 LRDLMFFLEAQQKLK 458 (493)
T ss_pred HHhHheehhhhhhhh
Confidence 877654444455554
No 24
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=43.01 E-value=2.7e+02 Score=25.58 Aligned_cols=73 Identities=14% Similarity=0.213 Sum_probs=52.4
Q ss_pred chHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc--ccchhhHHHHHHHHHHHH
Q psy4604 40 EHDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKI--FLTSYDMKIYNNKLQELT 117 (302)
Q Consensus 40 ~~~~F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~das~--~Lp~YD~r~~~~~l~~L~ 117 (302)
..+.|...|..+...|.+. +....+.|..|.++|+.|...+.++-. --.-....+..+.+..|.
T Consensus 29 ~ee~~L~e~~kE~~~L~~E--------------r~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk 94 (230)
T PF10146_consen 29 NEEKCLEEYRKEMEELLQE--------------RMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLK 94 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667888888877666432 333456788889999999998876533 223444556667899999
Q ss_pred HHHHHHHhh
Q psy4604 118 EQCNILETK 126 (302)
Q Consensus 118 ~~l~~~r~~ 126 (302)
..+++.|.+
T Consensus 95 ~~in~~R~e 103 (230)
T PF10146_consen 95 DEINELRKE 103 (230)
T ss_pred HHHHHHHHH
Confidence 999999887
No 25
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=42.72 E-value=3.9e+02 Score=28.79 Aligned_cols=48 Identities=13% Similarity=0.237 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhh
Q psy4604 78 EKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETK 126 (302)
Q Consensus 78 ~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~~ 126 (302)
+.-+.+..++.+|-..+......|..++ |.+.++|+.+...+...++.
T Consensus 607 d~Qe~L~~R~~~vl~~l~~~~P~LS~AE-r~~~~EL~~~~~~l~~l~~s 654 (717)
T PF10168_consen 607 DKQEKLMKRVDRVLQLLNSQLPVLSEAE-REFKKELERMKDQLQDLKAS 654 (717)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777776666777766 55555555555555544443
No 26
>KOG1666|consensus
Probab=41.69 E-value=2.6e+02 Score=25.60 Aligned_cols=77 Identities=17% Similarity=0.134 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH---hhccccchhhHHHHHHHHHHHHHHH
Q psy4604 44 FSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIV---DAKIFLTSYDMKIYNNKLQELTEQC 120 (302)
Q Consensus 44 F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~---das~~Lp~YD~r~~~~~l~~L~~~l 120 (302)
|.+.|..-.++|...+.++... +.+...+.+.+|...+.+.+..+. .....||+=-.-.|...|.+-+..+
T Consensus 8 yEqqy~~l~a~it~k~~~~~~~------~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl 81 (220)
T KOG1666|consen 8 YEQQYRELSAEITKKIGRALSL------PGSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSDL 81 (220)
T ss_pred HHHHHHHHHHHHHHhHHHHhcC------CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHH
Confidence 5566777777777777765322 222233445555555555554444 2244566655555666666655555
Q ss_pred HHHHhh
Q psy4604 121 NILETK 126 (302)
Q Consensus 121 ~~~r~~ 126 (302)
...+..
T Consensus 82 ~~l~~e 87 (220)
T KOG1666|consen 82 KKLKRE 87 (220)
T ss_pred HHHHHH
Confidence 555443
No 27
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=41.58 E-value=2.1e+02 Score=23.91 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy4604 44 FSNMFNENYDKIKGMIN 60 (302)
Q Consensus 44 F~~~F~~~~~~ie~~l~ 60 (302)
.+..|.+....++..|.
T Consensus 41 ~~~~f~~~~~~~~~~L~ 57 (142)
T PF04048_consen 41 RYQEFEELKKRIEKALQ 57 (142)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555554
No 28
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=41.27 E-value=1.6e+02 Score=22.44 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhhccccchhh-----HHHHHHHHHHHHHHHHHHHhhc
Q psy4604 82 DINKQILLLNHVIVDAKIFLTSYD-----MKIYNNKLQELTEQCNILETKL 127 (302)
Q Consensus 82 ~i~~~i~~L~~~v~das~~Lp~YD-----~r~~~~~l~~L~~~l~~~r~~~ 127 (302)
++..++..|+..|.+...-+|..+ ......+|..|..++.+....+
T Consensus 15 ~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 15 AVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444422 2223344444444444444433
No 29
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=40.64 E-value=2.9e+02 Score=29.71 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=23.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHhh
Q psy4604 98 KIFLTSYDMKIYNNKLQELTEQCNILETK 126 (302)
Q Consensus 98 s~~Lp~YD~r~~~~~l~~L~~~l~~~r~~ 126 (302)
+..||.+-.+...+.|+...+.|.+...+
T Consensus 679 s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ 707 (717)
T PF10168_consen 679 SIVLSESQKRTIKEILKQQGEEIDELVKQ 707 (717)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888776554
No 30
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=40.29 E-value=1.7e+02 Score=25.42 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHH
Q psy4604 47 MFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNIL 123 (302)
Q Consensus 47 ~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~ 123 (302)
.|-.++..|..++..+.......+ ...+.....+|+.|..-+.+++.. .+.+.|-.|++.++++
T Consensus 22 aYv~eKK~Insl~~~v~~l~nk~d------~~~yknyk~ki~eLke~lK~~~NA-------Eleekll~lq~lfq~K 85 (160)
T PF03978_consen 22 AYVEEKKEINSLIEDVSKLNNKSD------AEAYKNYKKKINELKEDLKDVSNA-------ELEEKLLKLQKLFQDK 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc------HHHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHH
Confidence 345556666666654311111111 146777777777777777776554 4445555554444443
No 31
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=37.84 E-value=3.5e+02 Score=27.93 Aligned_cols=68 Identities=18% Similarity=0.312 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHH
Q psy4604 45 SNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILE 124 (302)
Q Consensus 45 ~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r 124 (302)
..+|..+...+..+|+.. ..++..+.+.+..+...+.+|+.++.. -.+.|.++|..|.+.|-...
T Consensus 436 a~~f~~Ec~aL~~rL~~a-------E~ek~~l~eeL~~a~~~i~~LqDEL~T--------Tr~NYE~QLs~MSEHLasmN 500 (518)
T PF10212_consen 436 AVHFYAECRALQKRLESA-------EKEKESLEEELKEANQNISRLQDELET--------TRRNYEEQLSMMSEHLASMN 500 (518)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHHHH
Confidence 456777777888888731 224666788899999999999999875 34566677776666665555
Q ss_pred hhc
Q psy4604 125 TKL 127 (302)
Q Consensus 125 ~~~ 127 (302)
+++
T Consensus 501 eqL 503 (518)
T PF10212_consen 501 EQL 503 (518)
T ss_pred HHH
Confidence 443
No 32
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=34.66 E-value=85 Score=26.54 Aligned_cols=37 Identities=22% Similarity=0.509 Sum_probs=29.7
Q ss_pred CCcCeEEEeccCCCEEEEccccceEEEEcCCC-CeEEEEece
Q psy4604 213 GNASTIHLNNIKNSQIFLGPVSNSVFIDNCTD-STLYLACHQ 253 (302)
Q Consensus 213 ~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n-~~i~~~c~Q 253 (302)
|.+|++.|.|-...-+++ .+|.++++.+ ..|+..|.-
T Consensus 83 G~pGAi~V~N~h~~EffL----ksitLe~~p~~g~v~F~CNS 120 (137)
T cd01751 83 GPPGAVLVKNEHHSEFFL----KSITLEGFGGSGTITFVCNS 120 (137)
T ss_pred CCccEEEEEECCCceEEE----EEEEEeCCCCCccEEEEccc
Confidence 778999999999999987 5777888886 677777753
No 33
>KOG3809|consensus
Probab=33.79 E-value=4.6e+02 Score=26.72 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=48.9
Q ss_pred chHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH-------hhc------cccchhhH
Q psy4604 40 EHDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIV-------DAK------IFLTSYDM 106 (302)
Q Consensus 40 ~~~~F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~-------das------~~Lp~YD~ 106 (302)
..+.|.....++...|++.|..|. -+++ .+...||-|...|..|+++|. .++ .-++.-+.
T Consensus 469 ~a~~~~sa~~~~~~~lr~~~Q~Lt--kSa~-----PLgkl~D~i~eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~ 541 (583)
T KOG3809|consen 469 DADKIMSAEREKMKQLREKLQDLT--KSAY-----PLGKLFDFINEDIDAMQKELEMWRSEQRQNEQELQNEQAATFGAS 541 (583)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH--Hhhc-----cHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccc
Confidence 566788888888888888876551 1112 134566666666666666654 221 12344444
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy4604 107 KIYNNKLQELTEQCNILETKL 127 (302)
Q Consensus 107 r~~~~~l~~L~~~l~~~r~~~ 127 (302)
......|..|++.|...+..+
T Consensus 542 epL~~~la~lq~~I~d~~e~i 562 (583)
T KOG3809|consen 542 EPLYNILANLQKEINDTKEEI 562 (583)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777666543
No 34
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=33.23 E-value=1.9e+02 Score=26.95 Aligned_cols=90 Identities=14% Similarity=0.212 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhh-ccccchhhHHHHHHHHHHHHHHHHH-
Q psy4604 45 SNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDA-KIFLTSYDMKIYNNKLQELTEQCNI- 122 (302)
Q Consensus 45 ~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~da-s~~Lp~YD~r~~~~~l~~L~~~l~~- 122 (302)
+.=|.+-+...+..+.+....-..|=+=+ .+.++++..++..|+..+... ..||..||+-.-. -+++. -+...
T Consensus 51 L~~f~~lk~~A~r~~~~~G~rFlgG~aVP---~~~~~~l~~~L~~i~~eF~~~k~~Fl~~Yd~~i~~-w~~~~-pew~~~ 125 (257)
T PF11348_consen 51 LKPFSKLKKRAERLCLKVGVRFLGGYAVP---EDKAEELAEELEDIKTEFEQEKQDFLANYDQAIEE-WIDRH-PEWADI 125 (257)
T ss_pred cCHHHHHHHHHHHHHHHcCCcccceeEcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHC-hHHHHH
Confidence 45666667777777775532222121111 356788899999999877754 6799999986543 33332 22322
Q ss_pred HHhhcCC----CCCcccccCC
Q psy4604 123 LETKLLP----RKKFGFKKVD 139 (302)
Q Consensus 123 ~r~~~~p----kkKF~Fk~k~ 139 (302)
.|....| +++|+|.-..
T Consensus 126 Ir~~~~~~~~v~~r~~F~~~~ 146 (257)
T PF11348_consen 126 IRRAAPPAEDVRSRFSFSWQA 146 (257)
T ss_pred HHhcCCCHHHHHhhccceeEE
Confidence 2333333 5688887763
No 35
>KOG1029|consensus
Probab=33.21 E-value=2.3e+02 Score=30.97 Aligned_cols=8 Identities=25% Similarity=0.484 Sum_probs=3.1
Q ss_pred HHHHHHhh
Q psy4604 53 DKIKGMIN 60 (302)
Q Consensus 53 ~~ie~~l~ 60 (302)
..+++|+.
T Consensus 416 ar~qem~~ 423 (1118)
T KOG1029|consen 416 ARRQEMLN 423 (1118)
T ss_pred HHHHHHHh
Confidence 33334443
No 36
>KOG0971|consensus
Probab=32.60 E-value=6.3e+02 Score=28.25 Aligned_cols=110 Identities=14% Similarity=0.209 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccc----chHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHH---
Q psy4604 14 IPERLLKREQERISAIEKRQEKKGDK----EHDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQ--- 86 (302)
Q Consensus 14 ~~erl~~r~~~R~~~~~~~r~~~~~~----~~~~F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~--- 86 (302)
+.|+|+-.+..|.++..|=++-..-. ....|.....++...||.+|.+- - .+.....++-+....+
T Consensus 236 LtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~ra------R-~e~keaqe~ke~~k~emad 308 (1243)
T KOG0971|consen 236 LTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRA------R-KEAKEAQEAKERYKEEMAD 308 (1243)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHH
Confidence 44566666666666555443322211 66677777777788888877531 0 0111111111112222
Q ss_pred ------HHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy4604 87 ------ILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPR 130 (302)
Q Consensus 87 ------i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~~~~pk 130 (302)
+.-|.|+.++--..-=.-|+...++.+++|...|+-++++...+
T Consensus 309 ~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeek 358 (1243)
T KOG0971|consen 309 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEK 358 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22233444433222224556666666677777777776665443
No 37
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.25 E-value=1.6e+02 Score=33.68 Aligned_cols=50 Identities=8% Similarity=0.266 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh--ccccchhhHHHHH--HHHHHHHHHHHHHHhhc
Q psy4604 78 EKFADINKQILLLNHVIVDA--KIFLTSYDMKIYN--NKLQELTEQCNILETKL 127 (302)
Q Consensus 78 ~~l~~i~~~i~~L~~~v~da--s~~Lp~YD~r~~~--~~l~~L~~~l~~~r~~~ 127 (302)
..+..+..++..+...+.+. ......|+.+.-. ..+..|...+..++.++
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~le~~~~~l~~~~ 524 (1311)
T TIGR00606 471 DRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEM 524 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667777777666543 3345555554443 33666666666655543
No 38
>KOG2417|consensus
Probab=32.14 E-value=3.4e+02 Score=26.98 Aligned_cols=68 Identities=10% Similarity=0.232 Sum_probs=38.8
Q ss_pred HHHHhhhccc-chHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHH
Q psy4604 30 EKRQEKKGDK-EHDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKI 108 (302)
Q Consensus 30 ~~~r~~~~~~-~~~~F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~ 108 (302)
++++...+.. +...|++.|......-- . .. ...+.+..+++++..|+..... .||-.||.|+
T Consensus 215 ~~~~l~~e~~~k~pSff~r~w~~~~~~~---~-------~~-----~~~~~i~~lq~EV~~LEeLsrq--LFLE~~eLr~ 277 (462)
T KOG2417|consen 215 EEKRLQSEKVQKEPSFFRRFWGMFSSSV---Q-------DN-----TLSSDIKLLQQEVEPLEELSRQ--LFLELVELRQ 277 (462)
T ss_pred HHHhcCchhcccCCcHHHHHHHHHHHHh---c-------cc-----cchhhHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 4445444443 55566777776332221 1 11 1234667777777777665444 6788888888
Q ss_pred HHHHHH
Q psy4604 109 YNNKLQ 114 (302)
Q Consensus 109 ~~~~l~ 114 (302)
..+++.
T Consensus 278 ~ker~~ 283 (462)
T KOG2417|consen 278 MKERVA 283 (462)
T ss_pred HHHHHH
Confidence 777653
No 39
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=31.78 E-value=63 Score=25.77 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=33.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCc--ccccCCc
Q psy4604 98 KIFLTSYDMKIYNNKLQELTEQCNILETKLLPRKKF--GFKKVDK 140 (302)
Q Consensus 98 s~~Lp~YD~r~~~~~l~~L~~~l~~~r~~~~pkkKF--~Fk~k~~ 140 (302)
...+=.||..-..++|++|.+..+++-+.+-|+..| +|.+|-.
T Consensus 25 ~~dvi~~s~~pi~E~i~kLe~~addL~nsLdP~~~~l~S~PgREg 69 (96)
T PRK00965 25 REDIIVVDMDPIEEEINKLEALADDLENSLDPRNPPLNSYPGREG 69 (96)
T ss_pred cCCeEEEechHHHHHHHHHHHHHHHHHhccCCCCChhhcCCCCcc
Confidence 334456788888899999999999999999999887 6666643
No 40
>PF13345 DUF4098: Domain of unknown function (DUF4098)
Probab=31.66 E-value=1.8e+02 Score=20.29 Aligned_cols=46 Identities=15% Similarity=0.354 Sum_probs=23.7
Q ss_pred CCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcC
Q psy4604 197 KPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNC 242 (302)
Q Consensus 197 ~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c 242 (302)
.++.+.++.--.+.+....|.+.+.++..-.+.+-...|.|.+...
T Consensus 14 G~i~~~~~~~~~~~i~~~~G~i~i~~~~~~~~~~~~~~G~i~~~~~ 59 (76)
T PF13345_consen 14 GDIKLTNVKADNLDISSGSGDIDIQNVESSSIKVSTSSGDISLEGT 59 (76)
T ss_pred EEEEECceEeceEEEEeCCCCEEEEEeeeeeeeeeccccCEEEecc
Confidence 4555555444344454445666666655533444444566665543
No 41
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=31.48 E-value=2.2e+02 Score=22.82 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHH
Q psy4604 43 GFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIY 109 (302)
Q Consensus 43 ~F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~ 109 (302)
....++..+..+|.+.++.| ..|+ +.+..+...-..+-+.++-++.-|+.|.-.-|
T Consensus 21 ~lS~~L~~qle~L~~kl~~m----~dg~-------e~Va~Vl~NW~nV~r~Is~AS~~l~~~~~~~~ 76 (103)
T PF08654_consen 21 DLSADLASQLEALSEKLETM----ADGA-------EAVASVLANWQNVFRAISMASLSLAKYSEGDY 76 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHH----Hhcc-------HHHHHHHHhHHHHHHHHHHHHhhhhhcccccc
Confidence 34455556666777777766 3332 45566666666666666666666655544333
No 42
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=31.39 E-value=6.2e+02 Score=26.38 Aligned_cols=122 Identities=14% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCccccCccccCChHHHHHHHHHHHHHHHHHHHhhhccc----------chHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q psy4604 1 MENENISLGQEVNIPERLLKREQERISAIEKRQEKKGDK----------EHDGFSNMFNENYDKIKGMINEIDVDPNSGS 70 (302)
Q Consensus 1 ~~~~~~~~~~~~~~~erl~~r~~~R~~~~~~~r~~~~~~----------~~~~F~~~F~~~~~~ie~~l~~~~~~~~~~~ 70 (302)
|.-++.-+.. .++..||++...++....+--.+-.-.. +.+.||..|..++.+-..-...+
T Consensus 241 m~~~gY~l~~-~~id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~-------- 311 (570)
T COG4477 241 MKEEGYHLEH-VNIDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENL-------- 311 (570)
T ss_pred HHHccCCccc-ccHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhh--ccccchhh---HHHHHHHHHHHHHHHHHHHhhcC-CCCCcc
Q psy4604 71 VNKEELKEKFADINKQILLLNHVIVDA--KIFLTSYD---MKIYNNKLQELTEQCNILETKLL-PRKKFG 134 (302)
Q Consensus 71 ~~~~~~~~~l~~i~~~i~~L~~~v~da--s~~Lp~YD---~r~~~~~l~~L~~~l~~~r~~~~-pkkKF~ 134 (302)
+.+++.|+++...-..|......- ++.|+.=| +|+++..|++|...+++....+. +...|+
T Consensus 312 ---~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS 378 (570)
T COG4477 312 ---PILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYS 378 (570)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHH
No 43
>PF13345 DUF4098: Domain of unknown function (DUF4098)
Probab=31.29 E-value=1.5e+02 Score=20.67 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=15.1
Q ss_pred CcCeEEEeccCCCEEEEccccceEEEEcCCC
Q psy4604 214 NASTIHLNNIKNSQIFLGPVSNSVFIDNCTD 244 (302)
Q Consensus 214 ~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n 244 (302)
..+.+.+.++..-.+-+--..|.+.+.++.-
T Consensus 12 ~~G~i~~~~~~~~~~~i~~~~G~i~i~~~~~ 42 (76)
T PF13345_consen 12 SSGDIKLTNVKADNLDISSGSGDIDIQNVES 42 (76)
T ss_pred eEEEEEECceEeceEEEEeCCCCEEEEEeee
Confidence 3345555554444444444455555555544
No 44
>smart00808 FABD F-actin binding domain (FABD). FABD is the F-actin binding domain of Bcr-Abl and its cellular counterpart c-Abl. The Bcr-Abl tyrosine kinase causes different forms of leukemia in humans. Depending on its position within the cell, Bcr-Abl differentially affects cellular growth. The FABD forms a compact left-handed four-helix bundle in solution.
Probab=31.01 E-value=1.1e+02 Score=25.71 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=14.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Q psy4604 101 LTSYDMKIYNNKLQELTEQCNILE 124 (302)
Q Consensus 101 Lp~YD~r~~~~~l~~L~~~l~~~r 124 (302)
.|+...=++.|.+..|...+.++|
T Consensus 72 ~~phsKF~FRElvsrlE~~~r~Lr 95 (126)
T smart00808 72 PQPRSKFQFRELVSRLELQLRELR 95 (126)
T ss_pred CCccchhHHHHHHHHHHHHHHHHH
Confidence 555555566666666666655555
No 45
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=30.77 E-value=66 Score=25.71 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=32.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCc--ccccCCc
Q psy4604 101 LTSYDMKIYNNKLQELTEQCNILETKLLPRKKF--GFKKVDK 140 (302)
Q Consensus 101 Lp~YD~r~~~~~l~~L~~~l~~~r~~~~pkkKF--~Fk~k~~ 140 (302)
.=.||+.-..++|++|.+..+++-+.+.|+..| +|.+|-.
T Consensus 27 vi~~s~~pi~eqi~kLe~~addl~nsLdP~~~~l~S~PgREg 68 (97)
T PF05440_consen 27 VIVVSMDPINEQIDKLEKAADDLVNSLDPRTPPLNSFPGREG 68 (97)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHhccCCCCCccccCCCCcc
Confidence 345777778889999999999999999999888 6776654
No 46
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=29.96 E-value=1.3e+02 Score=27.79 Aligned_cols=13 Identities=8% Similarity=-0.046 Sum_probs=7.1
Q ss_pred eccCCCEEEEccc
Q psy4604 221 NNIKNSQIFLGPV 233 (302)
Q Consensus 221 ~n~~~c~I~~gpv 233 (302)
+-|.+|-|.+++.
T Consensus 198 ~~C~GC~m~l~~~ 210 (239)
T COG1579 198 RVCGGCHMKLPSQ 210 (239)
T ss_pred CcccCCeeeecHH
Confidence 4466666665543
No 47
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=29.80 E-value=1.5e+02 Score=25.39 Aligned_cols=84 Identities=20% Similarity=0.229 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhh
Q psy4604 47 MFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETK 126 (302)
Q Consensus 47 ~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~~ 126 (302)
.|.-..+++...|.-..... ..+...+.+..++..+-.|...++.....-+ .+...+.++.|.+.|++..+.
T Consensus 27 e~~G~lDEl~a~igla~~~~-----~~~~~~~~L~~iq~~L~~l~~~la~~~~~~~---~~i~~~~v~~Le~~i~~~~~~ 98 (163)
T PF01923_consen 27 EAYGTLDELNAFIGLARSEI-----KEEELREILERIQNELFDLGAELATPEEDEE---PEITEEDVQELEEEIDEYSEE 98 (163)
T ss_dssp HHHHHHHHHHHHHHHHHTHC-----TTHHHHHHHHHHHHHHHHHHHHHHTTTTSSS---CS--HHHHHHHHHHHHHHHHH
T ss_pred eeeeeHHHHHHHHHHHHHHc-----CchhHHHHHHHHHHHHHHHHHHHcCCCcccc---cccCHHHHHHHHHHHHHHHhc
Confidence 34555666666664321111 1233556677777777777777665432221 445567888888889888877
Q ss_pred cCCCCCcccccC
Q psy4604 127 LLPRKKFGFKKV 138 (302)
Q Consensus 127 ~~pkkKF~Fk~k 138 (302)
.-|.+.|-.-+-
T Consensus 99 ~~~~~~Filpgg 110 (163)
T PF01923_consen 99 LPPLKGFILPGG 110 (163)
T ss_dssp S-SESSCEES-S
T ss_pred CCCCceeEeCCC
Confidence 677778866553
No 48
>KOG3470|consensus
Probab=28.48 E-value=3.1e+02 Score=22.27 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHH
Q psy4604 74 EELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTE 118 (302)
Q Consensus 74 ~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~ 118 (302)
.++++....+......|+.++.+-.+.--.++.+.+...|+.+..
T Consensus 61 ~mlPD~~~RL~~a~~DLe~~l~~~~~~ee~~e~~~A~~~l~~~k~ 105 (107)
T KOG3470|consen 61 MMLPDSQRRLRKAYEDLESILADEQYLEETPELKSANTYLDSAKA 105 (107)
T ss_pred HHChHHHHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHHHHh
Confidence 345677788889999999999998888888898888888877654
No 49
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.50 E-value=2.8e+02 Score=21.09 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=40.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhc
Q psy4604 71 VNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKL 127 (302)
Q Consensus 71 ~~~~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~~~ 127 (302)
.+...+....+.+..+|+.....+.+..+ -.+....-...|+.|.+.+..+++-+
T Consensus 21 ~~~kd~~~~~~~lk~Klq~ar~~i~~lpg--i~~s~eeq~~~i~~Le~~i~~k~~~L 75 (83)
T PF07544_consen 21 LSSKDLDTATGSLKHKLQKARAAIRELPG--IDRSVEEQEEEIEELEEQIRKKREVL 75 (83)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888889999999888887554 35666666778888888887776643
No 50
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=26.71 E-value=2.2e+02 Score=21.65 Aligned_cols=51 Identities=18% Similarity=0.329 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy4604 47 MFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFL 101 (302)
Q Consensus 47 ~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~das~~L 101 (302)
.-.+++.+|+.+++.+. ..-..-..+.+.++.+.+.+..|+..|++-...|
T Consensus 15 ~vd~KVdaLq~~V~~l~----~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 15 AVDDKVDALQTQVDDLE----SNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHH----hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666542 1111123466778888888888888777655444
No 51
>PRK09039 hypothetical protein; Validated
Probab=26.07 E-value=4.4e+02 Score=25.51 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHh
Q psy4604 77 KEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILET 125 (302)
Q Consensus 77 ~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~ 125 (302)
...++.+...+..|+..+.++-.-. +-.+.+|..|...|+.+.+
T Consensus 143 ~~qI~aLr~Qla~le~~L~~ae~~~-----~~~~~~i~~L~~~L~~a~~ 186 (343)
T PRK09039 143 NQQIAALRRQLAALEAALDASEKRD-----RESQAKIADLGRRLNVALA 186 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554432222 4555667777777766643
No 52
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=25.88 E-value=3e+02 Score=20.97 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchh
Q psy4604 46 NMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSY 104 (302)
Q Consensus 46 ~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~das~~Lp~Y 104 (302)
..++..+..|+.++..+. +..+...+.+.+..+...+..|-+..++...-|+.+
T Consensus 6 ~~in~~v~~l~k~~~~lG-----t~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~ 59 (102)
T PF14523_consen 6 FKINQNVSQLEKLVNQLG-----TPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSL 59 (102)
T ss_dssp HHHHHHHHHHHHHHHHH------SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhC-----CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888889999998772 223456677778888888888887777766666665
No 53
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=25.83 E-value=2.5e+02 Score=22.32 Aligned_cols=47 Identities=19% Similarity=0.102 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhHH------HHHHHHHHHHHHHHHHHhh
Q psy4604 80 FADINKQILLLNHVIVDAKIFLTSYDMK------IYNNKLQELTEQCNILETK 126 (302)
Q Consensus 80 l~~i~~~i~~L~~~v~das~~Lp~YD~r------~~~~~l~~L~~~l~~~r~~ 126 (302)
.+++...+..|...+.++....|+=... .|++-++.|...|+.....
T Consensus 23 ~~e~~~~l~~m~~~a~~ak~~~P~~~~~d~~~~~~Y~~Gl~~li~~id~a~~~ 75 (103)
T PF07361_consen 23 AAEMKTALDKMRAAAEDAKQGKPPKLEGDSAEVKDYQEGLDKLIDQIDKAEAL 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTS-GGGTTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777776544444 5888888888777776553
No 54
>PF14282 FlxA: FlxA-like protein
Probab=25.74 E-value=3.1e+02 Score=21.86 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc--ccchhhHHHHHHHHHHHHHHHHHHHhhc
Q psy4604 77 KEKFADINKQILLLNHVIVDAKI--FLTSYDMKIYNNKLQELTEQCNILETKL 127 (302)
Q Consensus 77 ~~~l~~i~~~i~~L~~~v~das~--~Lp~YD~r~~~~~l~~L~~~l~~~r~~~ 127 (302)
...+..|...|..|+..+.+-.. .| |-+.-...++.|+..|..+...+
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~---~~e~k~~q~q~Lq~QI~~LqaQI 67 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDL---DAEQKQQQIQLLQAQIQQLQAQI 67 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCC---CHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888887776544 23 33333445555555555544443
No 55
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=25.70 E-value=6.6e+02 Score=25.45 Aligned_cols=63 Identities=11% Similarity=0.170 Sum_probs=34.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHH
Q psy4604 40 EHDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQ 119 (302)
Q Consensus 40 ~~~~F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~ 119 (302)
..+.++..-.++...++.+|.+ .+...+..-..++..|+.-+.-. ++++++.|..|...
T Consensus 303 ~p~~~l~~~~q~ld~~~~rL~~-------------~l~~~~~~~~~~~~~l~~rl~~~--------~~~~~~~~~~l~~~ 361 (440)
T COG1570 303 SPERLLSEQQQRLDELAIRLRR-------------ALENQLALKKQRLERLTQRLNPQ--------IQRQQQRLQQLERR 361 (440)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 3444455555555555555542 13344555555666666444433 77777777777776
Q ss_pred HHHH
Q psy4604 120 CNIL 123 (302)
Q Consensus 120 l~~~ 123 (302)
+...
T Consensus 362 l~~~ 365 (440)
T COG1570 362 LDKA 365 (440)
T ss_pred HHHH
Confidence 6653
No 56
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=24.84 E-value=5.1e+02 Score=23.25 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc
Q psy4604 76 LKEKFADINKQILLLNHVIVDAKIFLT 102 (302)
Q Consensus 76 ~~~~l~~i~~~i~~L~~~v~das~~Lp 102 (302)
....|+.+...|..|+...++....||
T Consensus 166 aqaQL~~lQ~qv~~Lq~q~~~~~~~lp 192 (192)
T PF11180_consen 166 AQAQLRQLQRQVRQLQRQANEPIPSLP 192 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 344555556666666665555554444
No 57
>KOG0976|consensus
Probab=24.60 E-value=8.2e+02 Score=27.10 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=36.3
Q ss_pred cceEEEEcCCCCeEEEEeceEeeccceeeeEEEEecCCcEEecCCCcEE
Q psy4604 234 SNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGF 282 (302)
Q Consensus 234 ~Gsv~i~~c~n~~i~~~c~QlRih~~~n~~~yl~~~s~pIIEdC~~i~f 282 (302)
.|.|.+.+|.=|-+-+ .---....|..|++++|.+.-|.+.+.-+|--
T Consensus 748 h~~Vlsmkcslcfvgi-tafaka~kcshcdvhvHasCaPrvnnTcglpa 795 (1265)
T KOG0976|consen 748 HGDVLSMKCSLCFVGI-TAFAKAPKCSHCDVHVHASCAPRVNNTCGLPA 795 (1265)
T ss_pred cCCeeecchhHhhhhh-HHhhcCcccccccccccccccCCCCCcccccc
Confidence 5899999999665433 33445778999999999999998877666643
No 58
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=24.52 E-value=6.5e+02 Score=24.34 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHH
Q psy4604 78 EKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNIL 123 (302)
Q Consensus 78 ~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~ 123 (302)
+.+..+..++.+-.+.+.+....-..++.+.|+.++..|...+++.
T Consensus 86 ~~~~~i~~~~~~q~~~l~~~~~~~~~~s~~~y~~~~~~l~~~l~~~ 131 (332)
T TIGR01541 86 DARLQIDRTFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKAALNEA 131 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccCHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555443345677777777777776665444
No 59
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=23.57 E-value=6.5e+02 Score=24.01 Aligned_cols=46 Identities=15% Similarity=0.277 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc-----chHHHHHHHHHHHHHHHHHhh
Q psy4604 15 PERLLKREQERISAIEKRQEKKGDK-----EHDGFSNMFNENYDKIKGMIN 60 (302)
Q Consensus 15 ~erl~~r~~~R~~~~~~~r~~~~~~-----~~~~F~~~F~~~~~~ie~~l~ 60 (302)
..+|.+..++|...++++=+.++.+ ....|...=++-.+.|+..+.
T Consensus 72 ~~~L~~l~~er~~~v~~ri~~~eqE~~R~~~~~~Fl~~~~qh~q~L~~~~~ 122 (289)
T PF05149_consen 72 ERELQDLAEERREEVERRIEMREQEAKRRTAAEEFLQAASQHKQRLRRCEE 122 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666655555544333332 344455444444444544443
No 60
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=23.06 E-value=8.3e+02 Score=25.04 Aligned_cols=51 Identities=18% Similarity=0.151 Sum_probs=33.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcC
Q psy4604 72 NKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLL 128 (302)
Q Consensus 72 ~~~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~~~~ 128 (302)
++......|+++..+|..|.+.+...+..+ .-...+..|.-.+..++..+.
T Consensus 372 Er~~~~~~l~~~~~~~~~le~~~~~~~~~~------~~~~~~~~l~~a~~~l~~~l~ 422 (582)
T PF09731_consen 372 ERNGRLAKLAELNSRLKALEEALDARSEAE------DENRRAQQLWLAVDALKSALD 422 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 345566788999999999999888755444 223455556666666655543
No 61
>PRK13411 molecular chaperone DnaK; Provisional
Probab=22.96 E-value=7.7e+02 Score=25.94 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhh
Q psy4604 78 EKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETK 126 (302)
Q Consensus 78 ~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~~ 126 (302)
+.-+.+...+.+++.+|.+.. -|...+.+.+++|++.+...-.+
T Consensus 555 ~er~~i~~~l~~~~~wL~~~~-----~~~~~~~~~~~el~~~~~~i~~~ 598 (653)
T PRK13411 555 ELKQRAEQKVEQLEAALTDPN-----ISLEELKQQLEEFQQALLAIGAE 598 (653)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888999999987621 15667777777777777665543
No 62
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.91 E-value=3.9e+02 Score=23.59 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy4604 74 EELKEKFADINKQILLLNHVIV 95 (302)
Q Consensus 74 ~~~~~~l~~i~~~i~~L~~~v~ 95 (302)
..+-..++.+..++..|++.+.
T Consensus 106 ~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 106 EELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555554444
No 63
>PLN02939 transferase, transferring glycosyl groups
Probab=22.63 E-value=4.2e+02 Score=29.63 Aligned_cols=73 Identities=14% Similarity=0.274 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhh-ccccchhhHHHHHHHHHHHHHHHHH
Q psy4604 46 NMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDA-KIFLTSYDMKIYNNKLQELTEQCNI 122 (302)
Q Consensus 46 ~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~da-s~~Lp~YD~r~~~~~l~~L~~~l~~ 122 (302)
...++++..++.+|+...++.... ..+-+.-+++..++..|...+.++ .+-+.+|-.+..+++++.|.+.+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (977)
T PLN02939 296 DCWWEKVENLQDLLDRATNQVEKA----ALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQA 369 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 347777888888887542211100 011122244555555555555554 2344555555555555555554443
No 64
>KOG1446|consensus
Probab=22.40 E-value=4.9e+02 Score=25.08 Aligned_cols=90 Identities=21% Similarity=0.292 Sum_probs=54.7
Q ss_pred eEEecccccEEEecC----CcCeEEEeccCCCEEEEcccc--ceEEEEcCCCCeEEEEec-eEeeccce--eeeEEEEec
Q psy4604 199 VSLSNIDSCVVKVNG----NASTIHLNNIKNSQIFLGPVS--NSVFIDNCTDSTLYLACH-QLRMHTSH--KCSVYLHVT 269 (302)
Q Consensus 199 ~~i~nl~~c~V~l~~----~~~sl~i~n~~~c~I~~gpv~--Gsv~i~~c~n~~i~~~c~-QlRih~~~--n~~~yl~~~ 269 (302)
+....=.+|.|+-.. ....|.+.+=+--..+-|.-. -++-+.=..++-+..++- ++|+-+.+ +|..+++..
T Consensus 62 ~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~ 141 (311)
T KOG1446|consen 62 ACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS 141 (311)
T ss_pred EEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC
Confidence 344444455554432 223344433333333334333 234444455666667776 88888776 899999999
Q ss_pred CCcEEe-cCCCcEEeeCCCC
Q psy4604 270 SRPIIE-HCKNIGFAPAVNI 288 (302)
Q Consensus 270 s~pIIE-dC~~i~f~py~~~ 288 (302)
.+||+- |=.|+.||--+..
T Consensus 142 ~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 142 GRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred CCcceeECCCCcEEEEecCC
Confidence 999996 8999999876544
No 65
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=21.97 E-value=3.4e+02 Score=20.18 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy4604 44 FSNMFNENYDKIKGMIN 60 (302)
Q Consensus 44 F~~~F~~~~~~ie~~l~ 60 (302)
|...|-+++.+|...|.
T Consensus 1 ~~~~f~~~v~~i~~~i~ 17 (103)
T PF00804_consen 1 FMPEFFDEVQEIREDID 17 (103)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34556666666665555
No 66
>PLN02939 transferase, transferring glycosyl groups
Probab=21.87 E-value=6e+02 Score=28.48 Aligned_cols=73 Identities=16% Similarity=0.329 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHH
Q psy4604 45 SNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILE 124 (302)
Q Consensus 45 ~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r 124 (302)
.+.+++++..|++.|.+. ... .-.+..++-+++++..|...+..+..-+-+| .+.|++.+++++..+..+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 396 (977)
T PLN02939 326 NQDLRDKVDKLEASLKEA----NVS----KFSSYKVELLQQKLKLLEERLQASDHEIHSY-IQLYQESIKEFQDTLSKLK 396 (977)
T ss_pred chHHHHHHHHHHHHHHHh----hHh----hhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 356777888888888742 111 1123566777788888888887777767665 5678888888888887766
Q ss_pred hh
Q psy4604 125 TK 126 (302)
Q Consensus 125 ~~ 126 (302)
.+
T Consensus 397 ~~ 398 (977)
T PLN02939 397 EE 398 (977)
T ss_pred hh
Confidence 54
No 67
>KOG3859|consensus
Probab=21.87 E-value=4e+02 Score=25.81 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=6.5
Q ss_pred cCChHHHHHHHHHHH
Q psy4604 11 EVNIPERLLKREQER 25 (302)
Q Consensus 11 ~~~~~erl~~r~~~R 25 (302)
|...++-|++++++.
T Consensus 328 r~e~~~e~qrkEee~ 342 (406)
T KOG3859|consen 328 RNEFLGELQRKEEEM 342 (406)
T ss_pred HHHHHHHHHHhHHHH
Confidence 344444444444443
No 68
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=21.86 E-value=7.1e+02 Score=25.94 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHh
Q psy4604 78 EKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILET 125 (302)
Q Consensus 78 ~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~ 125 (302)
+.-+.+...+.+++.+|.+. |...+.+.+++|...++....
T Consensus 553 ~e~~~i~~~l~~~~~wL~~~-------~~~~i~~k~~~L~~~~~~~~~ 593 (627)
T PRK00290 553 DEKEKIEAAIKELKEALKGE-------DKEAIKAKTEELTQASQKLGE 593 (627)
T ss_pred HHHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHHHH
Confidence 45578888888899888764 567777777777777766543
No 69
>KOG1029|consensus
Probab=21.75 E-value=7.6e+02 Score=27.22 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhhcC---C-CCCccc
Q psy4604 109 YNNKLQELTEQCNILETKLL---P-RKKFGF 135 (302)
Q Consensus 109 ~~~~l~~L~~~l~~~r~~~~---p-kkKF~F 135 (302)
....++.|+..|.+.++.+. | |....=
T Consensus 484 ~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 484 MISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34567888888888877653 3 445543
No 70
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.37 E-value=9.1e+02 Score=24.92 Aligned_cols=85 Identities=13% Similarity=0.268 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHH---HHHHHHHHHH
Q psy4604 44 FSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYN---NKLQELTEQC 120 (302)
Q Consensus 44 F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~---~~l~~L~~~l 120 (302)
.+..+.++...|+.+++++......| +.....+.++.+...+..|...+.+ +|++=...-. .+|++|..-.
T Consensus 166 a~~~le~~l~~~e~~f~~f~~l~~~G--d~~~A~e~l~~l~~~~~~l~~~~~~----iP~l~~~~~~~~P~ql~el~~gy 239 (569)
T PRK04778 166 ALDELEKQLENLEEEFSQFVELTESG--DYVEAREILDQLEEELAALEQIMEE----IPELLKELQTELPDQLQELKAGY 239 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHH
Confidence 34566666667777666553223334 3455567788888888888887776 6666544433 6778887777
Q ss_pred HHHHhhcCCCCCcccccCC
Q psy4604 121 NILETKLLPRKKFGFKKVD 139 (302)
Q Consensus 121 ~~~r~~~~pkkKF~Fk~k~ 139 (302)
.+... +.|.|..-.
T Consensus 240 ~~m~~-----~gy~~~~~~ 253 (569)
T PRK04778 240 RELVE-----EGYHLDHLD 253 (569)
T ss_pred HHHHH-----cCCCCCCCC
Confidence 77543 678887643
No 71
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.83 E-value=7.1e+02 Score=23.46 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHH
Q psy4604 44 FSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNIL 123 (302)
Q Consensus 44 F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~ 123 (302)
=+..-+.....++..|+.| ...++++..++.++++.++..- =+++.++..|+.|.+.|.+.
T Consensus 39 ~l~~~~~~~~~~q~ei~~L--------------~~qi~~~~~k~~~~~~~i~~~~-----~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 39 KLSELQKEKKNIQNEIESL--------------DNQIEEIQSKIDELQKEIDQSK-----AEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666643 2345566666666666555422 23344555555555555553
No 72
>KOG0994|consensus
Probab=20.63 E-value=1.2e+03 Score=27.07 Aligned_cols=115 Identities=12% Similarity=0.146 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhhccc--------chHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHH
Q psy4604 12 VNIPERLLKREQERISAIEKRQEKKGDK--------EHDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADI 83 (302)
Q Consensus 12 ~~~~erl~~r~~~R~~~~~~~r~~~~~~--------~~~~F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i 83 (302)
.++..++.+-++-+....+++.+..++. .+..-..+-++..++++..|.++.+.+...++++.++...-+++
T Consensus 1422 ~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~v 1501 (1758)
T KOG0994|consen 1422 TQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEV 1501 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q ss_pred H--------HHHHHHHHHHHhhccccchhhHHHHH--HHHHHHHHHHHHHHhh
Q psy4604 84 N--------KQILLLNHVIVDAKIFLTSYDMKIYN--NKLQELTEQCNILETK 126 (302)
Q Consensus 84 ~--------~~i~~L~~~v~das~~Lp~YD~r~~~--~~l~~L~~~l~~~r~~ 126 (302)
+ ++|..|...+++....||.-|.-.+. ..|..-...+.+++.+
T Consensus 1502 L~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a 1554 (1758)
T KOG0994|consen 1502 LALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERA 1554 (1758)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHH
No 73
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=20.16 E-value=1.1e+02 Score=21.70 Aligned_cols=18 Identities=22% Similarity=0.693 Sum_probs=10.8
Q ss_pred cccEEEecCCcCeEEEeccC
Q psy4604 205 DSCVVKVNGNASTIHLNNIK 224 (302)
Q Consensus 205 ~~c~V~l~~~~~sl~i~n~~ 224 (302)
..|+|.+.|. ++.|.||.
T Consensus 25 ~~C~I~ItGe--Sv~I~gC~ 42 (59)
T PF02495_consen 25 PSCVIVITGE--SVTISGCE 42 (59)
T ss_pred CCcEEEEeCc--EEEEECCC
Confidence 4566666663 56666653
No 74
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=20.05 E-value=1.2e+03 Score=26.52 Aligned_cols=51 Identities=14% Similarity=0.246 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy4604 41 HDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAK 98 (302)
Q Consensus 41 ~~~F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~das 98 (302)
...-|.++..+...+++.+..+. .........++....+|..+...+.+..
T Consensus 230 ~~~~~~~~~~~l~~~~~~l~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~e~~ 280 (1163)
T COG1196 230 LLAKLKELRKELEELEEELSRLE-------EELEELQEELEEAEKEIEELKSELEELR 280 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677777777777776431 0122334455555555555555554443
Done!