Query psy4604
Match_columns 302
No_of_seqs 179 out of 392
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 21:11:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bh7_B Protein XRP2; protein-p 100.0 3.9E-38 1.3E-42 300.3 14.6 122 176-297 41-162 (352)
2 2yuh_A Tubulin-specific chaper 100.0 8.1E-37 2.8E-41 267.0 9.9 125 174-298 8-132 (179)
3 2l3l_A Tubulin-specific chaper 99.9 8.8E-26 3E-30 182.4 7.8 106 14-131 1-111 (111)
4 3bh7_B Protein XRP2; protein-p 98.7 5.8E-08 2E-12 92.5 10.8 96 196-292 39-139 (352)
5 2yuh_A Tubulin-specific chaper 98.6 2.2E-07 7.6E-12 80.6 10.4 93 175-272 31-124 (179)
6 2b0r_A Possible adenyl cyclase 97.8 6.8E-05 2.3E-09 65.5 8.7 109 174-283 49-164 (202)
7 1k8f_A CAP, adenylyl cyclase-a 97.7 9.1E-05 3.1E-09 62.6 7.7 106 176-282 10-121 (157)
8 1k4z_A CAP, adenylyl cyclase-a 97.6 7.2E-05 2.5E-09 63.4 6.3 107 176-283 11-123 (159)
9 2b0r_A Possible adenyl cyclase 94.8 0.067 2.3E-06 46.7 7.2 90 176-268 74-165 (202)
10 1k8f_A CAP, adenylyl cyclase-a 93.7 0.1 3.5E-06 43.9 5.7 90 176-268 32-123 (157)
11 1k4z_A CAP, adenylyl cyclase-a 93.1 0.23 7.8E-06 41.9 6.9 91 176-269 33-125 (159)
12 2c5k_T Syntaxin TLG1, T-snare 74.0 10 0.00034 28.9 6.8 54 73-127 38-91 (95)
13 2qyw_A Vesicle transport throu 67.5 39 0.0013 25.8 10.2 78 44-126 20-100 (102)
14 3onj_A T-snare VTI1; helix, HA 64.4 43 0.0015 25.2 9.3 77 44-125 6-87 (97)
15 1gs9_A Apolipoprotein E, APOE4 62.9 27 0.00092 29.1 7.8 57 40-105 29-86 (165)
16 2lw1_A ABC transporter ATP-bin 60.4 35 0.0012 25.2 7.3 48 77-124 28-76 (89)
17 3kdq_A Uncharacterized conserv 57.2 39 0.0013 27.9 7.7 87 40-126 42-143 (154)
18 1vcs_A Vesicle transport throu 56.6 63 0.0021 24.5 9.5 75 44-125 10-88 (102)
19 4e81_A Chaperone protein DNAK; 47.9 1.3E+02 0.0045 25.7 10.1 41 78-125 172-212 (219)
20 1u00_A HSC66, chaperone protei 46.6 1.3E+02 0.0043 25.9 9.7 41 78-125 169-209 (227)
21 4b9q_A Chaperone protein DNAK; 33.3 2.5E+02 0.0086 27.6 10.7 42 78-126 560-601 (605)
22 2xus_A Breast cancer metastasi 27.9 1.4E+02 0.0047 20.0 5.5 37 82-125 10-46 (49)
23 2kho_A Heat shock protein 70; 27.6 1.4E+02 0.0049 29.3 7.7 41 78-125 560-600 (605)
24 3q8t_A Beclin-1; autophagy, AT 25.2 2.2E+02 0.0074 21.3 8.2 42 40-92 54-95 (96)
25 3m6c_A 60 kDa chaperonin 1; ch 21.8 1.2E+02 0.004 26.1 4.9 35 81-118 155-189 (194)
26 1z0k_B FYVE-finger-containing 21.5 2.1E+02 0.0071 20.4 5.4 44 81-124 23-66 (69)
27 3osx_A 60 kDa chaperonin; alph 20.7 1.3E+02 0.0043 26.0 4.9 35 81-118 162-196 (201)
No 1
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=100.00 E-value=3.9e-38 Score=300.33 Aligned_cols=122 Identities=30% Similarity=0.462 Sum_probs=119.5
Q ss_pred eeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEeceEe
Q psy4604 176 YIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLR 255 (302)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~QlR 255 (302)
.++|+|.+|++|.+.++++.+.++.|+||+||+|||.+++++|+|++|+||+|++|||.|||||++|.||+|+++|||||
T Consensus 41 ~~~i~~~~~~ti~~~~~~i~g~~v~I~nc~~c~I~l~~~~~sl~I~~c~nC~Iv~GpV~gsv~I~~C~n~~i~vac~QlR 120 (352)
T 3bh7_B 41 DYMFSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFR 120 (352)
T ss_dssp SSEEESCBSCEEEECTTSSTTCCEEEESCBSCEEEECSCBSCEEEESCBSCEEEEEEEEEEEEEESCEEEEEEEEEEEEE
T ss_pred ceEEECccCCEEEECCCcccCCcEEEecCcCCEEEEecCCceEEEecCCCCEEEEccccceEEEEcCCCcEEEEEcceEE
Confidence 57999999999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccceeeeEEEEecCCcEEecCCCcEEeeCCCCChhHHHhhh
Q psy4604 256 MHTSHKCSVYLHVTSRPIIEHCKNIGFAPAVNIDPVLLQLSS 297 (302)
Q Consensus 256 ih~~~n~~~yl~~~s~pIIEdC~~i~f~py~~~Y~~l~~~l~ 297 (302)
+|+|+||+|||+|+|+||||||++|+|||||+.|++|++||.
T Consensus 121 ih~c~n~~~yL~~~s~PIIEdc~~I~FaPyn~~Yp~l~~~l~ 162 (352)
T 3bh7_B 121 VRDCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFK 162 (352)
T ss_dssp EESCEEEEEEEEESSCCEEESCEEEEEEECCCBCTTHHHHHH
T ss_pred EecccCcEEEEEcCCCcEEEcCCCceEEccccCCccHHHHHH
Confidence 999999999999999999999999999999999999999986
No 2
>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding, beta-roll, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=8.1e-37 Score=267.01 Aligned_cols=125 Identities=34% Similarity=0.665 Sum_probs=120.3
Q ss_pred CceeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEece
Q psy4604 174 ETYIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQ 253 (302)
Q Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~Q 253 (302)
+..++|++++|++|++++++..+.++.|.||++|+|+|.+.+++|+|++|++|+|++|||.|||+|++|.||+|+++|+|
T Consensus 8 ~~~~~i~~~~~~~iv~~~~~~~~~~v~I~~c~~c~I~i~g~~~sl~i~~c~~c~Iv~g~V~gsv~i~~C~~~~i~v~c~Q 87 (179)
T 2yuh_A 8 SWVCGFSNLESQVLEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQ 87 (179)
T ss_dssp CCEEECCSCBSCEEEECHHHHSSCEEEECSCBSCEEEECSCCSCEEEESCBSCEEECCCCSSCEEEESCBSCEEECCCSE
T ss_pred CCeEEEEeeECCEEEECCccccCCeEEEecCcCCEEEEcCCccEEEEecCCCCEEEECCcccEEEEEeCCceEEEEEcCE
Confidence 45889999999999998776778999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccceeeeEEEEecCCcEEecCCCcEEeeCCCCChhHHHhhhc
Q psy4604 254 LRMHTSHKCSVYLHVTSRPIIEHCKNIGFAPAVNIDPVLLQLSST 298 (302)
Q Consensus 254 lRih~~~n~~~yl~~~s~pIIEdC~~i~f~py~~~Y~~l~~~l~~ 298 (302)
||||+|+||+|||++.++||||+|++|+||||+..|++|++||..
T Consensus 88 lri~~~~~~~~yL~~~s~PIIE~c~~i~fapy~~~Y~~l~~~l~~ 132 (179)
T 2yuh_A 88 LRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFES 132 (179)
T ss_dssp EEEESCBSCEEECCCSSEEEEESCBSEEEECCCCCCTTSHHHHHH
T ss_pred EEEeccCCeEEEEeCCCCcEEEcCCCceEecCccCCHhHHHHHHH
Confidence 999999999999999999999999999999999999999999864
No 3
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=99.92 E-value=8.8e-26 Score=182.41 Aligned_cols=106 Identities=25% Similarity=0.444 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccc-----chHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHH
Q psy4604 14 IPERLLKREQERISAIEKRQEKKGDK-----EHDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQIL 88 (302)
Q Consensus 14 ~~erl~~r~~~R~~~~~~~r~~~~~~-----~~~~F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~ 88 (302)
|+|||++|+++|+++.++||++++++ ++++|+.+|++++.+|+++|+.+ + ++++|++|..+|+
T Consensus 1 ~~eRL~~R~~~R~~~~~~r~~~~~~~~~~~E~~~~F~~~F~~~~~~Ie~~l~~~------~------~~~~ld~i~~~I~ 68 (111)
T 2l3l_A 1 MPERLQRREQERQLEVERRKQKRQNQEVEKENSHFFVATFARERAAVEELLERA------E------SVERLEEAASRLQ 68 (111)
T ss_dssp CCCCCCCHHHHHHTTHHHHTTSSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHC------C------SHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhcC------c------hhhHHHHHHHHHH
Confidence 68999999999999999999999976 88999999999999999999943 2 4688999999999
Q ss_pred HHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy4604 89 LLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRK 131 (302)
Q Consensus 89 ~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~~~~pkk 131 (302)
+|+++|+|+++|||+||+|+|++.|+.|+..|+++++++.|||
T Consensus 69 ~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~l~e~r~~l~PKK 111 (111)
T 2l3l_A 69 GLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKK 111 (111)
T ss_dssp HHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999997
No 4
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=98.71 E-value=5.8e-08 Score=92.48 Aligned_cols=96 Identities=18% Similarity=0.357 Sum_probs=75.0
Q ss_pred CCCeEEecccccEEEec-CCc--CeEEEeccCCCEEEEccccceEEEEcCCCCeEEEE--eceEeeccceeeeEEEEecC
Q psy4604 196 KKPVSLSNIDSCVVKVN-GNA--STIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLA--CHQLRMHTSHKCSVYLHVTS 270 (302)
Q Consensus 196 ~~~~~i~nl~~c~V~l~-~~~--~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~--c~QlRih~~~n~~~yl~~~s 270 (302)
...+.|+|+++.+|... +.. ..+.|.||+||.|++...-.+|+|++|.||+|++. ..-+.|++|.||.|++.|.+
T Consensus 39 ~~~~~i~~~~~~ti~~~~~~i~g~~v~I~nc~~c~I~l~~~~~sl~I~~c~nC~Iv~GpV~gsv~I~~C~n~~i~vac~Q 118 (352)
T 3bh7_B 39 PKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQ 118 (352)
T ss_dssp CCSSEEESCBSCEEEECTTSSTTCCEEEESCBSCEEEECSCBSCEEEESCBSCEEEEEEEEEEEEEESCEEEEEEEEEEE
T ss_pred CCceEEECccCCEEEECCCcccCCcEEEecCcCCEEEEecCCceEEEecCCCCEEEEccccceEEEEcCCCcEEEEEcce
Confidence 35788999999888775 322 58999999999998866668899999999998883 34788999999999987644
Q ss_pred CcEEecCCCcEEeeCCCCChhH
Q psy4604 271 RPIIEHCKNIGFAPAVNIDPVL 292 (302)
Q Consensus 271 ~pIIEdC~~i~f~py~~~Y~~l 292 (302)
-.|.+|+++.|.=+...=|=+
T Consensus 119 -lRih~c~n~~~yL~~~s~PII 139 (352)
T 3bh7_B 119 -FRVRDCRKLEVFLCCATQPII 139 (352)
T ss_dssp -EEEESCEEEEEEEEESSCCEE
T ss_pred -EEEecccCcEEEEEcCCCcEE
Confidence 788899999988665544433
No 5
>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding, beta-roll, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=2.2e-07 Score=80.58 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=79.8
Q ss_pred ceeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEece-
Q psy4604 175 TYIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQ- 253 (302)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~Q- 253 (302)
..+.+.+.++-+|.+.. ....++|.+|++|+|.+....++++|.||+||+|++. ...+.|++|.||.|++.|.+
T Consensus 31 ~~v~I~~c~~c~I~i~g---~~~sl~i~~c~~c~Iv~g~V~gsv~i~~C~~~~i~v~--c~Qlri~~~~~~~~yL~~~s~ 105 (179)
T 2yuh_A 31 RDVLLTELSNCTVRLYG---NPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVA--CQQLRIHSTKDTRIFLQVTSR 105 (179)
T ss_dssp CEEEECSCBSCEEEECS---CCSCEEEESCBSCEEECCCCSSCEEEESCBSCEEECC--CSEEEEESCBSCEEECCCSSE
T ss_pred CeEEEecCcCCEEEEcC---CccEEEEecCCCCEEEECCcccEEEEEeCCceEEEEE--cCEEEEeccCCeEEEEeCCCC
Confidence 36788999999988763 3578999999999999988889999999999999875 68999999999999998874
Q ss_pred EeeccceeeeEEEEecCCc
Q psy4604 254 LRMHTSHKCSVYLHVTSRP 272 (302)
Q Consensus 254 lRih~~~n~~~yl~~~s~p 272 (302)
--|.+|+++.|.=+-..=|
T Consensus 106 PIIE~c~~i~fapy~~~Y~ 124 (179)
T 2yuh_A 106 AIVEDCSGIQFAPYTWSYP 124 (179)
T ss_dssp EEEESCBSEEEECCCCCCT
T ss_pred cEEEcCCCceEecCccCCH
Confidence 5699999999887655444
No 6
>2b0r_A Possible adenyl cyclase-associated protein; structural genomics consortium, SGC, unknown function; 2.60A {Cryptosporidium parvum}
Probab=97.80 E-value=6.8e-05 Score=65.53 Aligned_cols=109 Identities=17% Similarity=0.262 Sum_probs=88.9
Q ss_pred CceeeEecccC--cEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEE--
Q psy4604 174 ETYIGFYNRSN--ETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYL-- 249 (302)
Q Consensus 174 ~~~~~~~~~~~--~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~-- 249 (302)
.+.+.+.+..| ..+++...+ -...+.|.+|.||+|.|.|...++.|++|++|.|++-.+=+++-|-+|.+..+.+
T Consensus 49 G~KW~VEn~~~~~~~lvi~~~e-~~qsV~I~~C~nstI~IkGKvNsItld~C~k~~vv~dsvVSsvEvinc~~v~vQV~G 127 (202)
T 2b0r_A 49 KDTYLVENHVNCADPITLSEGS-IKNKVSVRCSQNSRIIVEQKVNSIFIENCVGCIFLVNGVISSIEIVNCDDIKLQMTG 127 (202)
T ss_dssp TTEEEEECCBSCSSCEEECCCC-TTCEEEEEEEESCEEEECSCBSEEEEEEEEEEEEEECCBSSEEEEESCEEEEEEESS
T ss_pred CCEEEEEeccCCCCCceEeccc-cCcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEec
Confidence 34678888877 556654332 3678999999999999999999999999999999999999999999999999998
Q ss_pred EeceEeeccceeeeEEEEecC--CcEE-ecCCCcEEe
Q psy4604 250 ACHQLRMHTSHKCSVYLHVTS--RPII-EHCKNIGFA 283 (302)
Q Consensus 250 ~c~QlRih~~~n~~~yl~~~s--~pII-EdC~~i~f~ 283 (302)
.+..+=|-.|.+|.|||.-.| .-|+ --|++|-+.
T Consensus 128 ~vPTIsIDKtDg~qiYLSkeSl~teIvTSKSSemNV~ 164 (202)
T 2b0r_A 128 IVPTISLDKSNKVNIYTSKEGKNVEVYSSKSSEMNLL 164 (202)
T ss_dssp CCCEEEEESCEEEEEECCGGGTTCEEEEESCEEEEEE
T ss_pred ccCEEEEEccCCEEEEEcccccCcEEEEecccceeEe
Confidence 688999999999999997442 2344 456665543
No 7
>1k8f_A CAP, adenylyl cyclase-associated protein; actin bindin structural genomics, PSI, protein structure initiative; 2.80A {Homo sapiens} SCOP: b.80.5.1
Probab=97.71 E-value=9.1e-05 Score=62.60 Aligned_cols=106 Identities=17% Similarity=0.258 Sum_probs=85.5
Q ss_pred eeeEecccCc-EEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEE--Eec
Q psy4604 176 YIGFYNRSNE-TLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYL--ACH 252 (302)
Q Consensus 176 ~~~~~~~~~~-~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~--~c~ 252 (302)
.+.+.+..+. .+++... --...+.|.+|.||+|.+.|...++.|.+|++|.|++-.+=+++-+-+|.+..+.+ .+.
T Consensus 10 KW~VEn~~~~~~~~i~~~-~~~qsV~I~~C~~s~I~IkGKvNsIsld~C~k~~vv~ds~VSsvevinc~~~~vQv~g~vP 88 (157)
T 1k8f_A 10 KWRVENQENVSNLVIEDT-ELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVP 88 (157)
T ss_dssp EEEEESCBSCCCEEECCC-CTTCEEEEESCBSCEEEEEEEESEEEEESCEEEEEEEEEESSEEEEESCEEEEEEESSCCS
T ss_pred EEEEEeccCCcccEEEcc-ccCcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEecccC
Confidence 4666776653 3444332 23678999999999999999999999999999999999999999999999999998 688
Q ss_pred eEeeccceeeeEEEEecC--CcEE-ecCCCcEE
Q psy4604 253 QLRMHTSHKCSVYLHVTS--RPII-EHCKNIGF 282 (302)
Q Consensus 253 QlRih~~~n~~~yl~~~s--~pII-EdC~~i~f 282 (302)
.+=|-.+.+|.+||.-.| ..|+ --|++|-+
T Consensus 89 tisIDktdg~~iYLSkesl~~ei~TsKsS~mNv 121 (157)
T 1k8f_A 89 TISINKTDGCHAYLSKNSLDCEIVSAKSSEMNV 121 (157)
T ss_dssp EEEEESCEEEEEECCTTCTTCEEEEESCEEEEE
T ss_pred EEEEEccCCEEEEEccccCCcEEEEEcccceEE
Confidence 999999999999998543 2344 45666554
No 8
>1k4z_A CAP, adenylyl cyclase-associated protein; right-handed parallel beta-helix, intertwined dimer; 2.30A {Saccharomyces cerevisiae} SCOP: b.80.5.1 PDB: 1kq5_A
Probab=97.64 E-value=7.2e-05 Score=63.36 Aligned_cols=107 Identities=15% Similarity=0.198 Sum_probs=84.6
Q ss_pred eeeEecccCcE-EecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEE--Eec
Q psy4604 176 YIGFYNRSNET-LELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYL--ACH 252 (302)
Q Consensus 176 ~~~~~~~~~~~-i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~--~c~ 252 (302)
.+.+.+..+.. +..... --...+.|.+|.||+|.+.|...++.|.+|++|.|++-.+=+++-+-+|.+..+.+ .+.
T Consensus 11 KW~VEn~~~~~~~v~~~~-~~~qsV~I~~C~~s~I~IkGKvNsItld~C~k~~vv~ds~VSsvevinc~~v~vQv~g~vP 89 (159)
T 1k4z_A 11 KWFIENYENETESLVIDA-NKDESIFIGKCSQVLVQIKGKVNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLP 89 (159)
T ss_dssp EEEEECCBSCSSCEEEEC-CTTCEEEEEEEEEEEEEEESCBSEEEEEEEEEEEEEESCBSSCEEEEEEESEEEEESSCCS
T ss_pred EEEEEEeeCCCceEEEcc-ccCcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEecccC
Confidence 46666666642 222111 23578999999999999999999999999999999999999999999999999998 688
Q ss_pred eEeeccceeeeEEEEecC--CcEE-ecCCCcEEe
Q psy4604 253 QLRMHTSHKCSVYLHVTS--RPII-EHCKNIGFA 283 (302)
Q Consensus 253 QlRih~~~n~~~yl~~~s--~pII-EdC~~i~f~ 283 (302)
.+=|-.+.+|.+||.-.| .-|+ --|++|-+.
T Consensus 90 tisIDktdg~~iYLSkesl~~ei~TSksS~mNv~ 123 (159)
T 1k4z_A 90 QISIDKSDGGNIYLSKESLNTEIYTSCSTAINVN 123 (159)
T ss_dssp EEEEESCEEEEEECCSTTTTCEEEEESCEEEEEE
T ss_pred EEEEEccCCEEEEEChhhcCcEEEEEcccceeEE
Confidence 999999999999997442 2344 456666554
No 9
>2b0r_A Possible adenyl cyclase-associated protein; structural genomics consortium, SGC, unknown function; 2.60A {Cryptosporidium parvum}
Probab=94.84 E-value=0.067 Score=46.68 Aligned_cols=90 Identities=14% Similarity=0.275 Sum_probs=69.7
Q ss_pred eeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEec--e
Q psy4604 176 YIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACH--Q 253 (302)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~--Q 253 (302)
...|.+-.|.+|.+.. ....++|.||.+|.|.+.+..+++-|-||.+..|-+--.-=+|.|+.|..|.|+++-. .
T Consensus 74 sV~I~~C~nstI~IkG---KvNsItld~C~k~~vv~dsvVSsvEvinc~~v~vQV~G~vPTIsIDKtDg~qiYLSkeSl~ 150 (202)
T 2b0r_A 74 KVSVRCSQNSRIIVEQ---KVNSIFIENCVGCIFLVNGVISSIEIVNCDDIKLQMTGIVPTISLDKSNKVNIYTSKEGKN 150 (202)
T ss_dssp EEEEEEEESCEEEECS---CBSEEEEEEEEEEEEEECCBSSEEEEESCEEEEEEESSCCCEEEEESCEEEEEECCGGGTT
T ss_pred EEEEEeccceEEEEcC---cEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEecccCEEEEEccCCEEEEEcccccC
Confidence 5677778888888763 3578999999999999999999999999999999874444569999999999998732 3
Q ss_pred EeeccceeeeEEEEe
Q psy4604 254 LRMHTSHKCSVYLHV 268 (302)
Q Consensus 254 lRih~~~n~~~yl~~ 268 (302)
..+-.+....+.+.+
T Consensus 151 teIvTSKSSemNV~v 165 (202)
T 2b0r_A 151 VEVYSSKSSEMNLLF 165 (202)
T ss_dssp CEEEEESCEEEEEEE
T ss_pred cEEEEecccceeEec
Confidence 444455544444444
No 10
>1k8f_A CAP, adenylyl cyclase-associated protein; actin bindin structural genomics, PSI, protein structure initiative; 2.80A {Homo sapiens} SCOP: b.80.5.1
Probab=93.68 E-value=0.1 Score=43.90 Aligned_cols=90 Identities=11% Similarity=0.190 Sum_probs=68.6
Q ss_pred eeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEec--e
Q psy4604 176 YIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACH--Q 253 (302)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~--Q 253 (302)
...+.+-.|.+|.+.. ....++|.+|++|.|.+.+..+++-+-||.+..|-+--.-=+|.|+.|..|.|+++-. .
T Consensus 32 sV~I~~C~~s~I~IkG---KvNsIsld~C~k~~vv~ds~VSsvevinc~~~~vQv~g~vPtisIDktdg~~iYLSkesl~ 108 (157)
T 1k8f_A 32 VAYIYKCVNTTLQIKG---KINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYLSKNSLD 108 (157)
T ss_dssp EEEEESCBSCEEEEEE---EESEEEEESCEEEEEEEEEESSEEEEESCEEEEEEESSCCSEEEEESCEEEEEECCTTCTT
T ss_pred EEEEEeccceEEEEcC---cEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEecccCEEEEEccCCEEEEEccccCC
Confidence 5677777888887652 3468999999999999999999999999999999874444569999999999998732 3
Q ss_pred EeeccceeeeEEEEe
Q psy4604 254 LRMHTSHKCSVYLHV 268 (302)
Q Consensus 254 lRih~~~n~~~yl~~ 268 (302)
..+-.++...+.+.+
T Consensus 109 ~ei~TsKsS~mNv~v 123 (157)
T 1k8f_A 109 CEIVSAKSSEMNVLI 123 (157)
T ss_dssp CEEEEESCEEEEEEE
T ss_pred cEEEEEcccceEEee
Confidence 444455544444444
No 11
>1k4z_A CAP, adenylyl cyclase-associated protein; right-handed parallel beta-helix, intertwined dimer; 2.30A {Saccharomyces cerevisiae} SCOP: b.80.5.1 PDB: 1kq5_A
Probab=93.09 E-value=0.23 Score=41.89 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=69.8
Q ss_pred eeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEec--e
Q psy4604 176 YIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACH--Q 253 (302)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~--Q 253 (302)
...+.+-.|.+|.+.. ....++|.+|++|.|.+.+..+++-+-||.+..|-+--.-=+|.|+.|..|.|+++-. +
T Consensus 33 sV~I~~C~~s~I~IkG---KvNsItld~C~k~~vv~ds~VSsvevinc~~v~vQv~g~vPtisIDktdg~~iYLSkesl~ 109 (159)
T 1k4z_A 33 SIFIGKCSQVLVQIKG---KVNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLPQISIDKSDGGNIYLSKESLN 109 (159)
T ss_dssp EEEEEEEEEEEEEEES---CBSEEEEEEEEEEEEEESCBSSCEEEEEEESEEEEESSCCSEEEEESCEEEEEECCSTTTT
T ss_pred EEEEEeccceEEEEcC---cEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEecccCEEEEEccCCEEEEEChhhcC
Confidence 5667777788887763 3578999999999999999999999999999999874444569999999999999633 3
Q ss_pred EeeccceeeeEEEEec
Q psy4604 254 LRMHTSHKCSVYLHVT 269 (302)
Q Consensus 254 lRih~~~n~~~yl~~~ 269 (302)
..+-.+....+.+.+.
T Consensus 110 ~ei~TSksS~mNv~vp 125 (159)
T 1k4z_A 110 TEIYTSCSTAINVNLP 125 (159)
T ss_dssp CEEEEESCEEEEEEES
T ss_pred cEEEEEcccceeEEec
Confidence 4455555445555443
No 12
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=73.98 E-value=10 Score=28.93 Aligned_cols=54 Identities=19% Similarity=0.325 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhc
Q psy4604 73 KEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKL 127 (302)
Q Consensus 73 ~~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~~~ 127 (302)
..++...++++...|.+|.+.+.-+-.. ++.|...=..-+.+|.++|+..+..+
T Consensus 38 ~~El~~~l~el~e~l~DL~~SI~i~e~~-~~~EI~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 38 EEEIQDILKDVEETIVDLDRSIIVMKRD-ENEDVSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888999999999999977754444 89999999999999999999888764
No 13
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=67.50 E-value=39 Score=25.76 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhh---ccccchhhHHHHHHHHHHHHHHH
Q psy4604 44 FSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDA---KIFLTSYDMKIYNNKLQELTEQC 120 (302)
Q Consensus 44 F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~~v~da---s~~Lp~YD~r~~~~~l~~L~~~l 120 (302)
+-..|+.-.++|...|++++... ++ ......+.++...+.+...+|..- ...+|+=....|+.+|......|
T Consensus 20 YE~df~~l~~~i~~kl~~i~~~~--~~---e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL 94 (102)
T 2qyw_A 20 LHEIFRGLLEDLQGVPERLLGTA--GT---EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDL 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC--CS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--Cc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 35667777777888888763111 21 223344444444444444444321 22368877888999999988888
Q ss_pred HHHHhh
Q psy4604 121 NILETK 126 (302)
Q Consensus 121 ~~~r~~ 126 (302)
+.++.+
T Consensus 95 ~~lk~e 100 (102)
T 2qyw_A 95 AKLHRE 100 (102)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 877654
No 14
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=64.36 E-value=43 Score=25.20 Aligned_cols=77 Identities=9% Similarity=0.200 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCch----hhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHH
Q psy4604 44 FSNMFNENYDKIKGMINEIDVDPNSGSVNK----EELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQ 119 (302)
Q Consensus 44 F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~----~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~ 119 (302)
+-..|+.-...|...|++++ ...+.++ ......++++..-|..|.-++.... -|+=....|+.+|..-...
T Consensus 6 YE~df~~~~~~i~~~l~~~~---~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~--~p~~~R~~~~~klr~Yk~d 80 (97)
T 3onj_A 6 YESDFKTTLEQAKASLAEAP---SQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSI--GDASERATYKAKLREWKKT 80 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHGG---GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh---ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHH
Confidence 45677777888888888763 1111111 1223445555555566665655521 1666667777777766666
Q ss_pred HHH-HHh
Q psy4604 120 CNI-LET 125 (302)
Q Consensus 120 l~~-~r~ 125 (302)
|+. ++.
T Consensus 81 l~~~lk~ 87 (97)
T 3onj_A 81 IQSDIKR 87 (97)
T ss_dssp HHHHTHH
T ss_pred HHHHHHH
Confidence 666 443
No 15
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=62.92 E-value=27 Score=29.11 Aligned_cols=57 Identities=9% Similarity=0.071 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHH-HHHHHHHHHHHHHhhccccchhh
Q psy4604 40 EHDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFAD-INKQILLLNHVIVDAKIFLTSYD 105 (302)
Q Consensus 40 ~~~~F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~-i~~~i~~L~~~v~das~~Lp~YD 105 (302)
-.+.||.+|.+-...-.+.+++| . . +.+...|+. |...+..|+.++.+....|.+|-
T Consensus 29 v~~~~w~Y~~q~~~~a~~~v~ql----~-~----sel~qel~~~l~~~ld~l~~~~~~l~~~L~P~t 86 (165)
T 1gs9_A 29 ALGRFWDYLRWVQTLSEQVQEEL----L-S----SQVTQELRALMDETMKELKAYKSELEEQLTPVA 86 (165)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHH----H-S----SHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH----H-h----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 56789999998766656666655 1 1 234455555 88889999999999999999995
No 16
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=60.42 E-value=35 Score=25.19 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhh-HHHHHHHHHHHHHHHHHHH
Q psy4604 77 KEKFADINKQILLLNHVIVDAKIFLTSYD-MKIYNNKLQELTEQCNILE 124 (302)
Q Consensus 77 ~~~l~~i~~~i~~L~~~v~das~~Lp~YD-~r~~~~~l~~L~~~l~~~r 124 (302)
+..++.+.++|..|+..++|...|-..|+ .......+..+...|+.+-
T Consensus 28 e~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~ 76 (89)
T 2lw1_A 28 PQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAF 76 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778889999999998877765553 4556667777777766653
No 17
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=57.19 E-value=39 Score=27.88 Aligned_cols=87 Identities=9% Similarity=0.118 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhhccCCC---CC-CCCchhhHHHHHHHHHHHHHHHHHHHHhhc-----------cccchh
Q psy4604 40 EHDGFSNMFNENYDKIKGMINEIDVDP---NS-GSVNKEELKEKFADINKQILLLNHVIVDAK-----------IFLTSY 104 (302)
Q Consensus 40 ~~~~F~~~F~~~~~~ie~~l~~~~~~~---~~-~~~~~~~~~~~l~~i~~~i~~L~~~v~das-----------~~Lp~Y 104 (302)
.++..+..+..-...++..+.++..+- .. ++..-.+.-..-|.+..++.-|+..+..++ .+++.|
T Consensus 42 dp~~Ll~El~~~~~~L~~Li~~IN~TN~~~~~~~~~tl~eaia~rd~L~~~~~~l~~~~~~a~~~~~rys~sEIk~vs~v 121 (154)
T 3kdq_A 42 NPHEILTELEELTTRINDLVRRINRTNSVTEFSEGMTLADALSVRDALLKKRTLYSDLADQLTSRQDRYSRSEIKYVATM 121 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEETTEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSTTSCCEEESS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhheecc
Confidence 677778888888888888775441111 00 111112222334677888888888887554 478999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q psy4604 105 DMKIYNNKLQELTEQCNILETK 126 (302)
Q Consensus 105 D~r~~~~~l~~L~~~l~~~r~~ 126 (302)
|.+.|+.+.++|.+.+.++-..
T Consensus 122 dv~~~qk~ad~l~k~~r~Ld~~ 143 (154)
T 3kdq_A 122 DAREIRKKADLAAKEYRQLDVD 143 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988776443
No 18
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=56.57 E-value=63 Score=24.52 Aligned_cols=75 Identities=12% Similarity=0.240 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCch----hhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHH
Q psy4604 44 FSNMFNENYDKIKGMINEIDVDPNSGSVNK----EELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQ 119 (302)
Q Consensus 44 F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~----~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~ 119 (302)
+-..|..-.++|...|.+++.. .| .++ ......++++..-|..|.-++.. +|+=....|..+|......
T Consensus 10 YE~df~~l~~~i~~kl~~i~~~--~g-eerk~~i~~ie~~l~EA~ell~qMelE~r~----~p~~~R~~~~~klr~Yk~d 82 (102)
T 1vcs_A 10 YEQDFAVLTAEITSKIARVPRL--PP-DEKKQMVANVEKQLEEARELLEQMDLEVRE----IPPQSRGMYSNRMRSYKQE 82 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHGGGS--CT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHTT----SCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc--Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCHHhHHHHHHHHHHHHHH
Confidence 3567888888888888877421 12 122 12234455555555555555554 4655555566666555555
Q ss_pred HHHHHh
Q psy4604 120 CNILET 125 (302)
Q Consensus 120 l~~~r~ 125 (302)
|+.++.
T Consensus 83 L~~lk~ 88 (102)
T 1vcs_A 83 MGKLET 88 (102)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 19
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=47.94 E-value=1.3e+02 Score=25.74 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHh
Q psy4604 78 EKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILET 125 (302)
Q Consensus 78 ~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~ 125 (302)
+..+.+...+.++..++.+. |...|..++++|++.++....
T Consensus 172 ~~k~~i~~~l~~~~~~L~~~-------~~~~i~~~~~~L~~~~~~i~~ 212 (219)
T 4e81_A 172 DDKTAIESALTALETALKGE-------DKAAIEAKMQELAQVSQKLME 212 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHSS-------CHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHHHH
Confidence 45577888888888888764 677888888888887766543
No 20
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=46.64 E-value=1.3e+02 Score=25.88 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHh
Q psy4604 78 EKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILET 125 (302)
Q Consensus 78 ~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~ 125 (302)
+..+.+...+.++..++.. -|...|...+++|.+.+.....
T Consensus 169 ~~k~~i~~~l~~~~~wl~~-------~d~~~~~~~~~~L~~~~~~i~~ 209 (227)
T 1u00_A 169 AERQVIDDAAAHLSEVAQG-------DDVDAIEQAIKNVDKQTQDFAA 209 (227)
T ss_dssp HHHHHHHHHHHHHHHHTTS-------SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777652 2677788888888877766543
No 21
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=33.28 E-value=2.5e+02 Score=27.57 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhh
Q psy4604 78 EKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETK 126 (302)
Q Consensus 78 ~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~~ 126 (302)
+..+.+...+.++..++... |...+..++++|++.++..-++
T Consensus 560 ~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~l~~~~~~~~~~ 601 (605)
T 4b9q_A 560 DDKTAIESALTALETALKGE-------DKAAIEAKMQELAQVSQKLMEI 601 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHSS-------CHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888877642 6778888888888877665443
No 22
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=27.95 E-value=1.4e+02 Score=19.96 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHh
Q psy4604 82 DINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILET 125 (302)
Q Consensus 82 ~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~ 125 (302)
++...+..|.+.+++ .--+.|.+.|..|.++|++.++
T Consensus 10 e~ld~l~~LEkqF~~-------LkEqlY~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 10 ECVSEMLDLEKQFSE-------LKEKLFRERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHc
Confidence 445556666666554 2346789999999999998764
No 23
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=27.59 E-value=1.4e+02 Score=29.35 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHh
Q psy4604 78 EKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILET 125 (302)
Q Consensus 78 ~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~ 125 (302)
+..+.+...+.+++.++.. -|...+.+++++|++.++....
T Consensus 560 ~~~~~i~~~~~~~~~~l~~-------~~~~~~~~~~~~l~~~~~~~~~ 600 (605)
T 2kho_A 560 DDKTAIESALTALETALKG-------EDKAAIEAKMQELAQVSQKLME 600 (605)
T ss_dssp HHHHHHHHHHHHHHHHTTS-------SCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHHHHH
Confidence 4456777778888877652 2778888888888877665543
No 24
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=25.22 E-value=2.2e+02 Score=21.33 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHH
Q psy4604 40 EHDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNH 92 (302)
Q Consensus 40 ~~~~F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~L~~ 92 (302)
....||+.|+.-...+-+..+. ..++...++..+..+..|++
T Consensus 54 eE~~~w~eyn~~~~ql~e~~dE-----------~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 54 EEAQYQREYSEFKRQQLELDDE-----------LKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhc
Confidence 5566877777765555444442 23355667777777777764
No 25
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=21.85 E-value=1.2e+02 Score=26.09 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHH
Q psy4604 81 ADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTE 118 (302)
Q Consensus 81 ~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~ 118 (302)
+++.++++.++..+..++ +.||..+.+++|.+|..
T Consensus 155 ~~I~~Rv~qIr~~ie~t~---s~ydkEKLqERlAkLsG 189 (194)
T 3m6c_A 155 EAVANRAKHLRAEIDKSD---SDWDREKLGERLAKLAG 189 (194)
T ss_dssp HHHHHHHHHHHHHHHTCC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHcC
Confidence 678899999999887644 58999999999999864
No 26
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=21.48 E-value=2.1e+02 Score=20.43 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHH
Q psy4604 81 ADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILE 124 (302)
Q Consensus 81 ~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r 124 (302)
|=+.+++..++.++.+|...---=++......|.+|+..+...+
T Consensus 23 dPL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 23 DPLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 45788899999999998887777778888888888888887654
No 27
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=20.73 E-value=1.3e+02 Score=26.03 Aligned_cols=35 Identities=14% Similarity=0.352 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHH
Q psy4604 81 ADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTE 118 (302)
Q Consensus 81 ~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~ 118 (302)
++|.++++.|+..+..++ +.||..+.+++|.+|..
T Consensus 162 ~~I~~Rv~qIr~qie~t~---S~ydkEKLqERLAKLsG 196 (201)
T 3osx_A 162 GAIAARVTQIRQQIEEST---SDYDREKLQERVAKLAG 196 (201)
T ss_dssp HHHHHHHHHHHHHHHTCC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHcC
Confidence 678899999999887643 58999999999999864
Done!