RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4604
(302 letters)
>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding,
beta-roll, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 179
Score = 128 bits (322), Expect = 1e-36
Identities = 42/108 (38%), Positives = 70/108 (64%)
Query: 177 IGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNS 236
GF N ++ LE + ++H++ V L+ + +C V++ GN +T+ L + ++ GPVS S
Sbjct: 11 CGFSNLESQVLEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTS 70
Query: 237 VFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
VF+++C+D L +AC QLR+H++ ++L VTSR I+E C I FAP
Sbjct: 71 VFLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAP 118
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein
and GTPase, retinitis pigmentosa, GTP-binding,
lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens}
PDB: 3bh6_B* 2bx6_A
Length = 352
Score = 126 bits (316), Expect = 5e-34
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 6/150 (4%)
Query: 135 FKKVDKVKLGGQGDKTDEAEKKILPKDDVDFVKPRQHEEETYIGFYNRSNETLELPSEDV 194
F + + +E K D + V P+ F +ET+ V
Sbjct: 6 FFSKRRKADKESRPENEEERPKQYSWDQREKVDPKD------YMFSGLKDETVGRLPGTV 59
Query: 195 HKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQL 254
+ + + ++C + + +++T+ +++ N IFLGPV SVF NC D LAC Q
Sbjct: 60 AGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQF 119
Query: 255 RMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
R+ K V+L ++PIIE NI F
Sbjct: 120 RVRDCRKLEVFLCCATQPIIESSSNIKFGC 149
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo
sapiens}
Length = 111
Score = 73.9 bits (181), Expect = 8e-17
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 14 IPERLLKREQERISAIEKRQEKKGDKE-----HDGFSNMFNENYDKIKGMINEIDVDPNS 68
+PERL +REQER +E+R++K+ ++E F F ++ ++
Sbjct: 1 MPERLQRREQERQLEVERRKQKRQNQEVEKENSHFFVATFARERAAVEELLER------- 53
Query: 69 GSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLL 128
E E+ + ++ L +I D+ FL +YD++ L L L
Sbjct: 54 -----AESVERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQ 108
Query: 129 PRK 131
P+K
Sbjct: 109 PKK 111
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 2e-05
Identities = 53/271 (19%), Positives = 87/271 (32%), Gaps = 88/271 (32%)
Query: 57 GMINEIDVDPNSGSVNKEELKEKFADINKQILLLN--HVIVDAKIFLTSYDMKIYNNK-- 112
G ++ V+P+ + L + L N H + AK L D + K
Sbjct: 66 GYVSS-LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA-AK-LLQENDTTLVKTKEL 122
Query: 113 LQELTEQCNILETKLLPRKKFG----FKKVD--KVKL----GGQGDKTDEAEKKILPKDD 162
++ + + P K F+ V +L GGQG+ TD+
Sbjct: 123 IKNYITARIMAKR---PFDKKSNSALFRAVGEGNAQLVAIFGGQGN-TDDY--------- 169
Query: 163 VDFVKPRQHEE-----ETY---IG-FYNRSNETL-ELPSEDVHKKPVSLSNIDSCVVKVN 212
F EE +TY +G S ETL EL + + V ++ +++
Sbjct: 170 --F------EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN--ILEWL 219
Query: 213 GNASTIHLNNIKNSQIFLG--PVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTS 270
N S + +L P+S C + H Y+ VT
Sbjct: 220 ENPSNTP------DKDYLLSIPIS-------CPLIGVIQLAH------------YV-VT- 252
Query: 271 RPIIEHCKNIGFAPAVNIDPVLLQLSSTTHA 301
K +GF P + L +T H+
Sbjct: 253 ------AKLLGFTPG-ELRSYL--KGATGHS 274
Score = 34.6 bits (79), Expect = 0.044
Identities = 42/260 (16%), Positives = 71/260 (27%), Gaps = 97/260 (37%)
Query: 62 IDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCN 121
+ V P + +L+E+F KI + ++ E
Sbjct: 20 LLV-PTASFFIASQLQEQF----------------NKILPEPTEGFAADD------EPTT 56
Query: 122 ILETKLLPRKKF-GFKKVDKVKLGGQGDKTDEAEKKILPKDDVDFVKPRQHEEETYIGFY 180
E L+ + F G+ V + + + D+ L +F E Y
Sbjct: 57 PAE--LVGK--FLGY--VSSLVEPSKVGQFDQVLNLCL----TEF-------ENCY---- 95
Query: 181 NRSNETLELPSEDVHKKPVSL-SNIDSCVVKVNGNASTIHLNNIKN-------SQIFLGP 232
L D+H L D+ +VK IKN ++
Sbjct: 96 --------LEGNDIHALAAKLLQENDTTLVKTK--------ELIKNYITARIMAKRPFDK 139
Query: 233 VSNSVFIDNCTD--STLYLAC----------HQLRMHTSHKCSVYLHVTSRPIIEHCKNI 280
SNS + + L +LR L+ T ++ I
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD---------LYQTYHVLVGDL--I 188
Query: 281 GFAPAVNIDPVLLQLSSTTH 300
F+ L +L TT
Sbjct: 189 KFS-----AETLSELIRTTL 203
Score = 31.6 bits (71), Expect = 0.43
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 22/86 (25%)
Query: 6 ISLGQEV--NIPERLLKREQERISA----IEKRQ-----EKKG-DKEHDGFSNMFNENYD 53
S QE + ER+ KR + +E +Q + + D +N+ N
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDT----VTNVLNFI-- 1872
Query: 54 KIKGMINEIDVDPNSGSVNKEELKEK 79
K++ ID+ S++ EE++
Sbjct: 1873 KLQK----IDIIELQKSLSLEEVEGH 1894
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 40.1 bits (93), Expect = 3e-04
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 22/84 (26%)
Query: 10 QEVNIPERLLKREQERISAIEKRQEK----------KGDKEHDGFSNMFNENYDKIKGMI 59
QE PE + K +E+ +++ K K+ + ++ +E +K K
Sbjct: 82 QE---PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI-- 136
Query: 60 NEIDVDPNSGSVNKEELKEKFADI 83
N+ +K ++ ADI
Sbjct: 137 -------NNRIADKAFYQQPDADI 153
Score = 28.2 bits (62), Expect = 2.8
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 149 KTDEAEKKILPKDDVDFVKPRQHEEETYIGFYNRSNETLE 188
+ D A K + K ++ EE + R +E +E
Sbjct: 100 ELDAASKV---MEQEWREKAKKDLEE----WNQRQSEQVE 132
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.001
Identities = 56/342 (16%), Positives = 108/342 (31%), Gaps = 96/342 (28%)
Query: 1 MENENISLGQEVNIPERL--LKREQERISAIEKRQEKKG--------DKEHDGFSNMFN- 49
N NI R+ ++ E R+ ++ + + + + N FN
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRL--LKSKPYENCLLVLLNVQNAKA---WNAFNL 264
Query: 50 -----------ENYDKIKGMI-NEIDVDPNSGSVNKEELKE---KFADINKQIL------ 88
+ D + I +D +S ++ +E+K K+ D Q L
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 89 ---LLNHVIVDA-KIFLTSYD--MKIYNNKLQELTEQC-NILETKLLPRKKFG----FKK 137
+I ++ + L ++D + +KL + E N+LE RK F F
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY-RKMFDRLSVFP- 382
Query: 138 VDKVKLGGQ------GDKTDEAEKKILPKDDVDFVKPR---QHEEETYIGFYNRSNETLE 188
+ D ++ K K + +E+ I + E
Sbjct: 383 -PSAHIPTILLSLIWFDVIKSDVMVVVNK----LHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 189 LPSED--VHKKPVSLSNIDSCVVKVNGNASTI----------HLNNIKNSQ-------IF 229
+ +H+ V NI + + HL NI++ + +F
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 230 LGPVSNSVFIDN--CTDSTLYLAC-------HQLRMHTSHKC 262
L + F++ DST + A QL+ + + C
Sbjct: 498 L----DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Score = 38.3 bits (88), Expect = 0.003
Identities = 27/215 (12%), Positives = 56/215 (26%), Gaps = 79/215 (36%)
Query: 11 EVNIPERLL--------KREQERI-------SAIEKRQEKKGDKEHDGF-------SNMF 48
+IP LL K + + S +EK+ ++ + N +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 49 N------ENYDKIKGMINEIDVDPNSGSVNKE---------------ELKEKFADINKQI 87
++Y+ K D + E E+
Sbjct: 444 ALHRSIVDHYNIPKT------FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM-- 495
Query: 88 LLLNHVIVDAKIFLTSY-------------DMKIYNNKLQELTEQCNILETKLLPRKKFG 134
+ L+ ++ KI S +K Y + + E + F
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK---PYICDNDPKYERLVNAILDFL 552
Query: 135 F---------KKVDKVKLGGQGDKT---DEAEKKI 157
K D +++ + +EA K++
Sbjct: 553 PKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 33.7 bits (76), Expect = 0.089
Identities = 49/331 (14%), Positives = 98/331 (29%), Gaps = 97/331 (29%)
Query: 18 LLKREQERISAIEKRQEK----------KGDKEHDGF-SNMFNENYDKIKGMINEIDVDP 66
L K E + I + K ++ F + NY + I P
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 67 NSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDM--KIYNNKLQELTEQCNILE 124
+ + E +++ L N V AK ++ K+ L EL N+L
Sbjct: 106 SMMTRMYIEQRDR---------LYNDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNVL- 154
Query: 125 TKLLPRKKFGFKKVDKVKLGGQGDKTDEAEKKILPKDDV-DFVKPRQHEEETY---IGFY 180
+ G + G G K + D + + + + + +
Sbjct: 155 --I-----DG--------VLGSG-------KTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 181 NRSNETLELPSEDVHK-KPVSLSNID-SCVVKVNGNASTIHLNNI------KNSQIFLGP 232
N LE+ + +++ P S D S +K+ ++ L + +N + L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 233 VSNSVFID----NCTDSTLYLACHQLRMHTSHKC---SVYLHVTSRPIIEHCKNIGFAP- 284
V N+ + +C L + T K + T+ ++H ++ P
Sbjct: 253 VQNAKAWNAFNLSCK--IL--------LTTRFKQVTDFLSAATTTHISLDH-HSMTLTPD 301
Query: 285 --------------------AVNIDPVLLQL 295
+ +P L +
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
>2b0r_A Possible adenyl cyclase-associated protein; structural genomics
consortium, SGC, unknown function; 2.60A
{Cryptosporidium parvum}
Length = 202
Score = 33.9 bits (77), Expect = 0.033
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 181 NRSNETLELPSEDVHKK-PVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFI 239
N N + + K VS+ + + V ++I + N + V +S+ I
Sbjct: 56 NHVNCADPITLSEGSIKNKVSVRCSQNSRIIVEQKVNSIFIENCVGCIFLVNGVISSIEI 115
Query: 240 DNCTDSTLYL--ACHQLRMHTSHKCSVYLHVTS 270
NC D L + + + S+K ++Y
Sbjct: 116 VNCDDIKLQMTGIVPTISLDKSNKVNIYTSKEG 148
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 29.1 bits (66), Expect = 0.27
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 53 DKIKGMINEIDVDPNSGSVNKEELKEKFADI 83
++ + ID D +G +++ E + + I
Sbjct: 36 QLLQLIFKSIDAD-GNGEIDQNEFAKFYGSI 65
Score = 27.5 bits (62), Expect = 0.95
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 55 IKGMINEIDVDPNSGSVNKEELKEKFADINKQI 87
+ + EIDV+ G+V+ EE+K +
Sbjct: 2 AEALFKEIDVN-GDGAVSYEEVKAFVSKKRAIK 33
>1k4z_A CAP, adenylyl cyclase-associated protein; right-handed parallel
beta-helix, intertwined dimer; 2.30A {Saccharomyces
cerevisiae} SCOP: b.80.5.1 PDB: 1kq5_A
Length = 159
Score = 29.9 bits (67), Expect = 0.50
Identities = 15/92 (16%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 181 NRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFID 240
N NET L + + + + +V++ G + I L+ ++ + L + + +
Sbjct: 16 NYENETESLVIDANKDESIFIGKCSQVLVQIKGKVNAISLSETESCSVVLDSSISGMDVI 75
Query: 241 NCTDSTLYL--ACHQLRMHTSHKCSVYLHVTS 270
+ + + Q+ + S ++YL S
Sbjct: 76 KSNKFGIQVNHSLPQISIDKSDGGNIYLSKES 107
>3grl_A General vesicular transport factor P115; vesicle transport,
membrane trafficking, membrane tethering, fusion, snare,
RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB:
3gq2_A 2w3c_A
Length = 651
Score = 30.8 bits (69), Expect = 0.54
Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 5/64 (7%)
Query: 21 REQERISAIEKRQEKKGDKEHD-----GFSNMFNENYDKIKGMINEIDVDPNSGSVNKEE 75
+ E S ++ + F+ + E I I + + K+
Sbjct: 585 SKHELYSRASQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEEDKKEEEVKKT 644
Query: 76 LKEK 79
L++
Sbjct: 645 LEQH 648
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 29.4 bits (67), Expect = 0.62
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 38 DKEHDGF-------SNMFNENYDKIKGMINEIDVDPNSGSVNKEE 75
D + DG S +K+ + + D + G + EE
Sbjct: 85 DVDGDGKLTKEEVTSFFKKHGIEKVAEQVMKADAN-GDGYITLEE 128
Score = 27.5 bits (62), Expect = 3.3
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 12/60 (20%)
Query: 38 DKEHDGF-----------SNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQ 86
D DG +N ++ + ID D +G +++ E + + I Q
Sbjct: 10 DVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDAD-GNGEIDQNEFAKFYGSIQGQ 68
>1k8f_A CAP, adenylyl cyclase-associated protein; actin bindin structural
genomics, PSI, protein structure initiative; 2.80A {Homo
sapiens} SCOP: b.80.5.1
Length = 157
Score = 29.9 bits (67), Expect = 0.63
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 188 ELPSEDVHKK-PVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDST 246
L ED K + + +++ G ++I ++N K + V V I N D
Sbjct: 21 NLVIEDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVK 80
Query: 247 LYL--ACHQLRMHTSHKCSVYLHVTS 270
+ + + ++ + C YL S
Sbjct: 81 VQVMGKVPTISINKTDGCHAYLSKNS 106
Score = 28.0 bits (62), Expect = 2.3
Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 197 KPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYL--ACHQL 254
+++ N + + + + N K+ ++ + ++ I+ YL
Sbjct: 50 NSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYLSKNSLDC 109
Query: 255 RMHTSHKCS 263
+ ++ K S
Sbjct: 110 EIVSA-KSS 117
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 28.3 bits (64), Expect = 0.75
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 11/48 (22%)
Query: 38 DKEHDGF----------SNMFNENYDKIKGMINEIDVDPNSGSVNKEE 75
D DG + + + D+++ M+ EID D G ++ E
Sbjct: 13 DTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTD-GDGFIDFNE 59
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 29.4 bits (67), Expect = 0.85
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 13/50 (26%)
Query: 38 DKEHDGF----------SNMFNEN--YDKIKGMINEIDVDPNSGSVNKEE 75
D DG + + I+ +I ++D++ G V+ EE
Sbjct: 98 DTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLN-GDGRVDFEE 146
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 27.5 bits (62), Expect = 1.2
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 12/49 (24%)
Query: 38 DKEHDGF----------SNM-FNENYDKIKGMINEIDVDPNSGSVNKEE 75
D++ DG + + +++ MI E DVD G VN EE
Sbjct: 16 DQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVD-QDGRVNYEE 63
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 28.1 bits (63), Expect = 1.2
Identities = 5/49 (10%), Positives = 18/49 (36%), Gaps = 12/49 (24%)
Query: 38 DKEHDGFSNM-----------FNENYDKIKGMINEIDVDPNSGSVNKEE 75
D +G ++ + + ++K +I E+ + + + +
Sbjct: 42 DLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSG-SGETFSYPD 89
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 27.9 bits (63), Expect = 1.3
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 12/49 (24%)
Query: 38 DKEHDGF----------SNM-FNENYDKIKGMINEIDVDPNSGSVNKEE 75
DK+ +G+ N+ ++++ MI E D+D G VN EE
Sbjct: 19 DKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLD-GDGQVNYEE 66
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana} SCOP: a.39.1.5
Length = 67
Score = 27.1 bits (61), Expect = 1.5
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 53 DKIKGMINEIDVDPNSGSVNKEELKEKFADINKQIL 88
+ I EIDVD +G +N +E F +++L
Sbjct: 37 EDIVKFFEEIDVD-GNGELNADE----FTSCIEKML 67
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 27.8 bits (62), Expect = 1.6
Identities = 5/42 (11%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 46 NMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQI 87
+Y I D + ++++EE + + +
Sbjct: 17 KAVTSHYHAITQEFENFDTM-KTNTISREEFRAICNRRVQIL 57
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 27.5 bits (62), Expect = 1.6
Identities = 5/21 (23%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 55 IKGMINEIDVDPNSGSVNKEE 75
++ + E D D +G ++ E
Sbjct: 47 VEEAMKEADED-GNGVIDIPE 66
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 27.2 bits (61), Expect = 1.7
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 11/48 (22%)
Query: 38 DKEHDGF----------SNMFNENYDKIKGMINEIDVDPNSGSVNKEE 75
D DG + + D+++ M+ EID D G ++ +E
Sbjct: 21 DTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTD-GDGFISFDE 67
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 28.3 bits (64), Expect = 2.1
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 53 DKIKGMINEIDVDPNSGSVNKEE 75
+ + MI+EID D SG+V+ EE
Sbjct: 127 EDLDAMIDEIDAD-GSGTVDFEE 148
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 27.9 bits (62), Expect = 2.3
Identities = 7/49 (14%), Positives = 21/49 (42%), Gaps = 12/49 (24%)
Query: 38 DKEHDGFSNM-----------FNENYDKIKGMINEIDVDPNSGSVNKEE 75
D ++G ++ + + ++K MI+E+ S +++ +
Sbjct: 60 DLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGG-VSDTISYRD 107
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 28.0 bits (63), Expect = 2.5
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 43 GFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINK 85
G FN ++ +I+ D + N VN E + I
Sbjct: 36 GTWTPFNP--VTVRSIISMFDRE-NKAGVNFSEFTGVWKYITD 75
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 27.9 bits (63), Expect = 3.0
Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 53 DKIKGMINEIDVDPNSGSVNKEE 75
++++ MI E D+D G +N+ E
Sbjct: 132 EELRAMIEEFDLD-GDGEINENE 153
Score = 26.4 bits (59), Expect = 8.2
Identities = 4/21 (19%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 55 IKGMINEIDVDPNSGSVNKEE 75
I +I+E D + + ++
Sbjct: 61 ILDLIDEYDSE-GRHLMKYDD 80
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 26.4 bits (59), Expect = 3.1
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 22/68 (32%)
Query: 38 DKEHDGF-----------------SNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKF 80
D DG+ + ++ + +I D + + G ++KEE F
Sbjct: 17 DANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKN-SDGKISKEE----F 71
Query: 81 ADINKQIL 88
+ N ++L
Sbjct: 72 LNANAELL 79
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 27.4 bits (62), Expect = 3.3
Identities = 8/23 (34%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 53 DKIKGMINEIDVDPNSGSVNKEE 75
++++ MI+E D D G V+++E
Sbjct: 115 EELQEMIDEADRD-GDGEVSEQE 136
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 26.9 bits (60), Expect = 3.3
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 12/49 (24%)
Query: 38 DKEHDGF----------SNM-FNENYDKIKGMINEIDVDPNSGSVNKEE 75
DK+ +G+ +N+ +++ MI E D+D G VN EE
Sbjct: 39 DKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADID-GDGQVNYEE 86
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 27.5 bits (62), Expect = 3.4
Identities = 5/23 (21%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 53 DKIKGMINEIDVDPNSGSVNKEE 75
+ I+ ++ + D + N G ++ +E
Sbjct: 132 EDIEDLMKDSDKN-NDGRIDFDE 153
Score = 26.4 bits (59), Expect = 9.5
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 55 IKGMINEIDVDPNSGSVNKEE 75
+ +I E+D D SG+++ EE
Sbjct: 58 LDAIIEEVDED-GSGTIDFEE 77
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 27.5 bits (62), Expect = 3.5
Identities = 6/23 (26%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 53 DKIKGMINEIDVDPNSGSVNKEE 75
D I+ ++ + D + N G ++ +E
Sbjct: 131 DDIEELMKDGDKN-NDGRIDYDE 152
Score = 26.4 bits (59), Expect = 8.6
Identities = 9/21 (42%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 55 IKGMINEIDVDPNSGSVNKEE 75
++ MI+E+D D SG+V+ +E
Sbjct: 57 LQEMIDEVDED-GSGTVDFDE 76
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 27.5 bits (62), Expect = 3.8
Identities = 5/23 (21%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 53 DKIKGMINEIDVDPNSGSVNKEE 75
++++ MI E D + + ++++E
Sbjct: 137 EELQEMIAEADRN-DDNEIDEDE 158
Score = 26.4 bits (59), Expect = 9.8
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 55 IKGMINEIDVDPNSGSVNKEE 75
IK MI+EID D SG+++ EE
Sbjct: 66 IKKMISEIDKD-GSGTIDFEE 85
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 27.4 bits (61), Expect = 3.9
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 53 DKIKGMINEIDVDPNSGSVNKEELKEKFAD 82
D + +D D G V + E+ FA
Sbjct: 132 DLARQAAAALDTD-GDGKVGETEIVPAFAR 160
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 27.2 bits (60), Expect = 3.9
Identities = 5/49 (10%), Positives = 18/49 (36%), Gaps = 12/49 (24%)
Query: 38 DKEHDGFSNM-----------FNENYDKIKGMINEIDVDPNSGSVNKEE 75
D +G ++ + + ++K +I E+ + + + +
Sbjct: 58 DLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSG-SEETFSYSD 105
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 26.0 bits (58), Expect = 4.2
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 48 FNENYDKIKGMINEIDVDPNSGSVNKEE 75
+ + MI E+D + G V+ EE
Sbjct: 40 LLKGMSTLDEMIEEVDKN-GDGEVSFEE 66
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 27.5 bits (61), Expect = 4.3
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 53 DKIKGMINEIDVDPNSGSVNKEELKE 78
+ + D+D SG ++ +E+
Sbjct: 145 EDCEETFRVCDID-ESGQLDVDEMTR 169
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 27.6 bits (62), Expect = 4.5
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 53 DKIKGMINEIDVDPNSGSVNKEE------LKEKFADINKQILLLNHVIVDA-KIF 100
I MI EID D N G ++ E ++ I ++ + + DA +
Sbjct: 116 IHIDDMIKEIDQD-NDGQIDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLV 169
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 26.4 bits (59), Expect = 4.5
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 55 IKGMINEIDVDPNSGSVNKEE 75
+ +I E+D D SG+++ EE
Sbjct: 58 LDAIIEEVDED-GSGTIDFEE 77
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 26.9 bits (60), Expect = 4.8
Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 53 DKIKGMINEIDVDPNSGSVNKEE 75
+ +GM+ E D+D G++N+ E
Sbjct: 77 EDAQGMVREGDLD-GDGALNQTE 98
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.0 bits (59), Expect = 6.4
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 25 RI-SAIEKRQEKKGDKEHDGFSNMFNENYDKIKGMI--NEIDVDPNSGSVNKEELKEKFA 81
RI S +E K+ K+ + E ++ I + NEI N+ N + ++
Sbjct: 146 RIVSGLELSDTKQKGKKFLVIA---YEPFENIAIELPPNEILFSENNDMDNNNDGVDEL- 201
Query: 82 DINKQILLLNHVIVDAKIF 100
NK+ +K++
Sbjct: 202 --NKK---CTFWDAISKLY 215
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 26.7 bits (60), Expect = 6.6
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 12/49 (24%)
Query: 38 DKEHDGF-----------SNMFNENYDKIKGMINEIDVDPNSGSVNKEE 75
D + G N +I ++ DVD NSG+++ +E
Sbjct: 37 DADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVD-NSGTIDYKE 84
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 25.5 bits (57), Expect = 6.7
Identities = 5/21 (23%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 55 IKGMINEIDVDPNSGSVNKEE 75
I ++NE D + +G + ++
Sbjct: 45 ILELMNEYDRE-GNGYIGFDD 64
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major}
SCOP: a.39.1.8
Length = 191
Score = 26.9 bits (60), Expect = 6.7
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 55 IKGMINEIDVDPNSGSVNKEELKEKFADINK 85
+ +++ D + +SG + +E K+ I
Sbjct: 65 TEKLLHMYDKN-HSGEITFDEFKDLHHFILS 94
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 25.6 bits (57), Expect = 6.8
Identities = 7/21 (33%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 55 IKGMINEIDVDPNSGSVNKEE 75
IK +++ D+D SG+++ E
Sbjct: 61 IKDLMDAADID-KSGTIDYGE 80
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 26.7 bits (60), Expect = 8.0
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 53 DKIKGMINEIDVDPNSGSVNKEE 75
+++ MI E D+D G VN EE
Sbjct: 120 EEVDEMIREADID-GDGQVNYEE 141
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 26.5 bits (59), Expect = 8.3
Identities = 4/33 (12%), Positives = 15/33 (45%)
Query: 55 IKGMINEIDVDPNSGSVNKEELKEKFADINKQI 87
++ ++ D G V E ++ ++ ++ +
Sbjct: 154 LRRFLDNFDSSEKDGQVTLAEFQDYYSGVSASM 186
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 26.6 bits (59), Expect = 9.4
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 12/49 (24%)
Query: 38 DKEHDGF----------SNMF-NENYDKIKGMINEIDVDPNSGSVNKEE 75
DK+ G + + + + D+D N+G ++ +E
Sbjct: 123 DKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLD-NAGDLDVDE 170
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable,
cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus
marinus}
Length = 696
Score = 27.0 bits (60), Expect = 9.7
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 157 ILPKDDVDFVKPRQHEEETYIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGN 214
++ R E I N S++ + + + + K + N + V N
Sbjct: 622 ENLGSNL-LFIKRWINNEEIIFLLNVSSKDISVDLKKLGKYSFDIYNEKNIDQHVENN 678
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.377
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,425,333
Number of extensions: 262211
Number of successful extensions: 645
Number of sequences better than 10.0: 1
Number of HSP's gapped: 623
Number of HSP's successfully gapped: 127
Length of query: 302
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 209
Effective length of database: 4,105,140
Effective search space: 857974260
Effective search space used: 857974260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.6 bits)