BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4606
(69 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG 50
L+V VPP + E +D +G K+ CKA G+P+P +TWK+ G
Sbjct: 709 LNVYVPPRWILE--PTDKAFAQGSDAKVECKADGFPKPQVTWKKAVG 753
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 33 CKAKGYPRPHITWKREDGQEI 53
CKA G P P I W R DG +
Sbjct: 61 CKASGNPMPEIIWIRSDGTAV 81
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
P ++ + + M P G ++ L C A G P P I+W+ DG++I
Sbjct: 429 PPVIRQAFQEETMEP-GPSVFLKCVAGGNPTPEISWEL-DGKKI 470
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 28 TIKLVCKAKGYPRPHITWKR 47
T+ L+C A+GYP P W +
Sbjct: 265 TMALLCPAQGYPVPVFRWYK 284
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 1 MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKR 47
+L V V P I+ ++ + E G + LVC A+G P P ITWKR
Sbjct: 87 QAFLQVFVQPHIIQLKNETTY---ENGQVTLVCDAEGEPIPEITWKR 130
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKR-----EDGQEIIIKEGNT 60
P I + S + A G + C+A G P P I+W R E+ ++ I+K NT
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT 58
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From
The Neural Cell Adhesion Molecule
Length = 107
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 17/68 (25%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE----------------- 48
V VPP + +S+ + A ++ L C A G+P P +TW ++
Sbjct: 8 VNVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNY 67
Query: 49 DGQEIIIK 56
DG E+IIK
Sbjct: 68 DGSELIIK 75
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKR-----EDGQEIIIKEGNT 60
V VPP I + S + A G + C+A G P P I+W R E+ ++ I+K NT
Sbjct: 189 VNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT 248
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKR-----EDGQEIIIKEGNT 60
V VPP I + S + A G + C+A G P P I+W R E+ ++ I+K NT
Sbjct: 93 VNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT 152
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
V VPP + +S + A G ++ LVC A G+P P ++W + DG+ I
Sbjct: 191 VNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTK-DGEPI 237
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 23 APEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK 56
A +G T+KL C A G P P I W+R DG+ I K
Sbjct: 216 AEKGTTVKLECFALGNPVPTILWRRADGKPIARK 249
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 19 SDIMAP---EGGTIKLVCKAKGYPRPHITWK 46
S +M P E +KL C+ KG P+PHI WK
Sbjct: 12 SHVMFPLDSEEKKVKLSCEVKGNPKPHIRWK 42
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 23 APEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK 56
A +G T+KL C A G P P I W+R DG+ I K
Sbjct: 217 AEKGTTVKLECFALGNPVPTILWRRADGKPIARK 250
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 19 SDIMAP---EGGTIKLVCKAKGYPRPHITWK 46
S +M P E +KL C+ KG P+PHI WK
Sbjct: 13 SHVMFPLDSEEKKVKLSCEVKGNPKPHIRWK 43
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 25 EGGTIKLVCKAKGYPRPHITWKR 47
E G + LVC A+G P P ITWKR
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKR 36
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
YLD+ P ++ ++ + EG I + C K P I W+R+
Sbjct: 94 YLDIEYAPKFISNQTI--YYSWEGNPINISCDVKSNPPASIHWRRD 137
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 25 EGGTIKLVCKAKGYPRPHITWKR 47
E G + LVC A+G P P ITWKR
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKR 36
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
YLD+ P ++ ++ + EG I + C K P I W+R+
Sbjct: 94 YLDIEYAPKFISNQTI--YYSWEGNPINISCDVKSNPPASIHWRRD 137
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From
Mouse
Length = 212
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 17 SSSDIMAPEGGTIKLVCKAKGYPRPHITWK 46
+ SD+ PE +IKL C G+ P + WK
Sbjct: 7 AQSDVQVPENESIKLTCTYSGFSSPRVEWK 36
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 33.1 bits (74), Expect = 0.038, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
PP + E D + GG VC+A G P+P +TW ++
Sbjct: 6 PPRFIKE--PKDQIGVSGGVASFVCQATGDPKPRVTWNKK 43
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 28 TIKLVCKAKGYPRPHITWKRE 48
T ++C A G P P ITW ++
Sbjct: 125 TATMLCAASGNPDPEITWFKD 145
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of
Human Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
PP + E D + GG VC+A G P+P +TW ++
Sbjct: 6 PPRFIKE--PKDQIGVSGGVASFVCQATGDPKPRVTWNKK 43
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 26 GGTIKLVCKAKGYPRPHITW 45
GG + + C A G P P++ W
Sbjct: 220 GGNVNITCVAVGSPMPYVKW 239
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 28 TIKLVCKAKGYPRPHITWKRE 48
T ++C A G P P ITW ++
Sbjct: 125 TATMLCAASGNPDPEITWFKD 145
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
PP + E D + GG VC+A G P+P +TW ++
Sbjct: 6 PPRFIKE--PKDQIGVSGGVASFVCQATGDPKPRVTWNKK 43
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 28 TIKLVCKAKGYPRPHITW 45
T ++C A G P P ITW
Sbjct: 125 TATMLCAASGNPDPEITW 142
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 32.3 bits (72), Expect = 0.061, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54
+ S+++A EG L C GYP P TW R G+E+I
Sbjct: 226 QRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR--GEEVI 262
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
L V+VPP LN S++ A E I+ C G P P + W +K G+ ++P
Sbjct: 307 LTVLVPPWFLNH--PSNLYAYESMDIEFECAVSGKPVPTVNW---------MKNGDVVIP 355
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.0 bits (71), Expect = 0.080, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 13 LNEESSSDIMAPEGGTIKLVCKAKGYPRPHITW 45
+ + + + EG T++ VC+A G P P I W
Sbjct: 387 IRDRKAQQVFVDEGHTVQFVCRADGDPPPAILW 419
>pdb|2CH8|A Chain A, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|B Chain B, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|C Chain C, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|D Chain D, Structure Of The Epstein-barr Virus Oncogene Barf1
Length = 201
Score = 32.0 bits (71), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
+L VV P + S P+ + + C +P PH+ W +G E N V
Sbjct: 98 HLSVVKPLTLSVHSERSQF--PDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGV 155
Query: 63 PKSKD 67
K KD
Sbjct: 156 MKEKD 160
>pdb|4FA8|A Chain A, Multi-Pronged Modulation Of Cytokine Signaling
pdb|4FA8|B Chain B, Multi-Pronged Modulation Of Cytokine Signaling
pdb|4FA8|D Chain D, Multi-Pronged Modulation Of Cytokine Signaling
Length = 203
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
+L VV P + S P+ + + C +P PH+ W +G E N V
Sbjct: 100 HLSVVKPLTLSVHSERSQF--PDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGV 157
Query: 63 PKSKD 67
K KD
Sbjct: 158 MKEKD 162
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDG 50
D+ EG + CK +GYP P + W ++D
Sbjct: 50 DMEVVEGSAARFDCKVEGYPDPEVMWFKDDN 80
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 26 GGTIKLVCKAKGYPRPHITWKRE 48
GG VC+A G P+P ITW ++
Sbjct: 22 GGVASFVCQATGEPKPRITWMKK 44
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 25 EGGTIKLVCKAKGYPRPHITWKRE 48
+G T ++C A G P P I+W ++
Sbjct: 123 KGRTATMLCAAGGNPDPEISWFKD 146
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 20 DIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
D + GG VC+A G P+P +TW ++
Sbjct: 15 DQIGVSGGVASFVCQATGDPKPRVTWNKK 43
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 28 TIKLVCKAKGYPRPHITW 45
T ++C A G P P ITW
Sbjct: 125 TATMLCAASGNPDPEITW 142
>pdb|3UEZ|A Chain A, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|B Chain B, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|C Chain C, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|D Chain D, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|A Chain A, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|B Chain B, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|C Chain C, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|D Chain D, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|E Chain E, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|F Chain F, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|M Chain M, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|N Chain N, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|O Chain O, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|P Chain P, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|Q Chain Q, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|R Chain R, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|A Chain A, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|B Chain B, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|C Chain C, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|D Chain D, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
Length = 208
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSK 66
VV P L+ S P+ + + C +P PH+ W +G E N V K K
Sbjct: 101 VVKPLTLSVHSERS-QFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPSAANGGVMKEK 159
Query: 67 D 67
D
Sbjct: 160 D 160
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDG 50
D+ EG + CK +GYP P + W ++D
Sbjct: 50 DMDVVEGSAARFDCKVEGYPDPEVMWFKDDN 80
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITW-KREDG 50
++V PDI + S + EG + CK+ GYP P W K+E+G
Sbjct: 87 IEVKAAPDITGHKRSEN--KNEGQDAMMYCKSVGYPHPEWMWRKKENG 132
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 31 LVCKAKGYPRPHITWKREDGQEII 54
LVCK G+P+P + W R+ G+EII
Sbjct: 22 LVCKVTGHPKPIVKWYRQ-GKEII 44
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169
Of Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 31 LVCKAKGYPRPHITWKREDGQEII 54
LVCK G+P+P + W R+ G+EII
Sbjct: 24 LVCKVTGHPKPIVKWYRQ-GKEII 46
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 31 LVCKAKGYPRPHITWKREDGQEII 54
LVCK G+P+P + W R+ G+EII
Sbjct: 24 LVCKVTGHPKPIVKWYRQ-GKEII 46
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Lar In
Complex With Sucrose Octasulphate
Length = 214
Score = 31.2 bits (69), Expect = 0.18, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 26 GGTIKLVCKAKGYPRPHITWKRE 48
GG VC+A G P+P ITW ++
Sbjct: 21 GGVASFVCQATGEPKPRITWMKK 43
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKDIF 69
++ P +L C+A+GYP+ + W D Q + K T + + +F
Sbjct: 126 VVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLF 174
>pdb|1DR9|A Chain A, Crystal Structure Of A Soluble Form Of B7-1 (Cd80)
Length = 201
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 17 SSSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEI 53
S SD P +++C G +P PH++W E+G+E+
Sbjct: 112 SISDFEIPTSNIRRIICSTSGGFPEPHLSW-LENGEEL 148
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKDIF 69
++ P +L C+A+GYP+ + W D Q + K T + + +F
Sbjct: 126 VVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLF 174
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKDIF 69
++ P +L C+A+GYP+ + W D Q + K T + + +F
Sbjct: 126 VVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLF 174
>pdb|3BP5|B Chain B, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
pdb|3BP6|B Chain B, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
Length = 202
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 24 PEGGTIKLVCKAKGYPRPHITWK 46
P G ++L C+A+GYP ++W+
Sbjct: 116 PGTGEVQLTCQARGYPLAEVSWQ 138
>pdb|3RNQ|B Chain B, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 201
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 24 PEGGTIKLVCKAKGYPRPHITWK 46
P G ++L C+A+GYP ++W+
Sbjct: 115 PGTGEVQLTCQARGYPLAEVSWQ 137
>pdb|4F9L|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9L|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9P|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
pdb|4F9P|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
Length = 220
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 20 DIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEI 53
D+ + G I L C++ G YP+P I W G+ I
Sbjct: 127 DVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENI 161
>pdb|4F80|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain
Length = 226
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 20 DIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEI 53
D+ + G I L C++ G YP+P I W G+ I
Sbjct: 127 DVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENI 161
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITW 45
PP I+ E SD++ +G L CKA+G P P I W
Sbjct: 9 PPRIV--EHPSDLIVSKGEPATLNCKAEGRPTPTIEW 43
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 16 ESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDG------QEIIIKEGNTMVPKSK 66
++ SD+M G + C+ +G+P P I+WK++ + I I+ G M+ ++
Sbjct: 116 QNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTR 173
>pdb|1I8L|A Chain A, Human B7-1CTLA-4 Co-Stimulatory Complex
pdb|1I8L|B Chain B, Human B7-1CTLA-4 Co-Stimulatory Complex
Length = 208
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 17 SSSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEI 53
S SD P +++C G +P PH++W E+G+E+
Sbjct: 112 SISDFEIPTSNIRRIICSTSGGFPEPHLSW-LENGEEL 148
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITW 45
PP I+ E SD++ +G L CKA+G P P I W
Sbjct: 9 PPRIV--EHPSDLIVSKGEPATLNCKAEGRPTPTIEW 43
>pdb|4F8Q|A Chain A, Crystal Structure Of The Human Btn3a2 Ectodomain
Length = 219
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 25 EGGTIKLVCKAKG-YPRPHITWKREDGQEI 53
E G I L C++ G YP+P I W G+ I
Sbjct: 132 EDGGIHLECRSTGWYPQPQIQWSNAKGENI 161
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWK 46
+PP I E SDI EG + + C G P P +TW
Sbjct: 4 IPPKI--EALPSDISIDEGKVLTVACAFTGEPTPEVTWS 40
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 30.4 bits (67), Expect = 0.30, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQE 52
+D A G + L C A G P P I W++ DG +
Sbjct: 215 ADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ 248
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+D A G ++ C A G PRP + W R DGQ +
Sbjct: 302 TDTEADIGSDLRWSCVASGKPRPAVRWLR-DGQPL 335
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWK 46
+PP I E SDI EG + + C G P P +TW
Sbjct: 6 IPPKI--EALPSDISIDEGKVLTVACAFTGEPTPEVTWS 42
>pdb|4F9L|D Chain D, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9L|C Chain C, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
Length = 259
Score = 30.0 bits (66), Expect = 0.30, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY--PRPHITW-KREDGQ 51
+ES ++++ P G ++KL CKA GY R ++ W K+ GQ
Sbjct: 136 QESGAELVKP-GASVKLSCKASGYTFTRYYLYWVKQRPGQ 174
>pdb|3TT3|H Chain H, Crystal Structure Of Leut In The Inward-Open
Conformation In Complex With Fab
Length = 221
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY--PRPHITW-KREDGQ 51
++S +++M P G ++K+ CKA GY HI W K+ GQ
Sbjct: 5 QQSGTELMRP-GASVKISCKAFGYTFTNHHINWMKQRPGQ 43
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
PP+I+ + + + GG C A+G P P I W R++G+++
Sbjct: 8 PPEIIRKPQNQGVRV--GGVASFYCAARGDPPPSIVW-RKNGKKV 49
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 26 GGTIKLVCKAKGYPRPHITW 45
G T+ + CKA G P P+I W
Sbjct: 127 GHTVLMTCKAIGNPTPNIYW 146
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
PP+I+ + + + GG C A+G P P I W R++G+++
Sbjct: 6 PPEIIRKPQNQGVRV--GGVASFYCAARGDPPPSIVW-RKNGKKV 47
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 26 GGTIKLVCKAKGYPRPHITW 45
G T+ + CKA G P P+I W
Sbjct: 125 GHTVLMTCKAIGNPTPNIYW 144
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 17 SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG 50
S ++ PE +KL C G+ P + WK + G
Sbjct: 10 SEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQG 43
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 26 GGTIKLVCKAKGYPRPHITWKRE 48
GG +C+A G PRP I W ++
Sbjct: 21 GGVASFICQATGDPRPKIVWNKK 43
Score = 25.4 bits (54), Expect = 8.6, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 28 TIKLVCKAKGYPRPHITWKRE 48
T ++C A G P P ITW ++
Sbjct: 125 TATMLCAASGNPDPEITWFKD 145
>pdb|4F8T|A Chain A, Crystal Structure Of The Human Btn3a3 Ectodomain
Length = 226
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 25 EGGTIKLVCKAKG-YPRPHITWKREDGQEI 53
E G I L C++ G YP+P I W G+ I
Sbjct: 132 EDGGIHLECRSTGWYPQPQIKWSDTKGENI 161
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
Length = 104
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDG 50
++ PE +KL C G+ P + WK + G
Sbjct: 12 EVRIPENNPVKLSCAYSGFSSPRVEWKFDQG 42
>pdb|2ZCH|H Chain H, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 229
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRP--HITWKRE 48
++S D++ P G ++KL CKA GY +I W R+
Sbjct: 5 QQSGDDLVKP-GASVKLSCKASGYTFTTYYINWMRQ 39
>pdb|2ZCK|H Chain H, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|H Chain H, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 230
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRP--HITWKRE 48
++S D++ P G ++KL CKA GY +I W R+
Sbjct: 5 QQSGDDLVKP-GASVKLSCKASGYTFTTYYINWMRQ 39
>pdb|2OR9|H Chain H, The Structure Of The Anti-C-Myc Antibody 9e10 Fab
FragmentEPITOPE PEPTIDE COMPLEX REVEALS A NOVEL BINDING
Mode Dominated By The Heavy Chain Hypervariable Loops
pdb|2OR9|I Chain I, The Structure Of The Anti-C-Myc Antibody 9e10 Fab
FragmentEPITOPE PEPTIDE COMPLEX REVEALS A NOVEL BINDING
Mode Dominated By The Heavy Chain Hypervariable Loops
pdb|2ORB|H Chain H, The Structure Of The Anti-C-Myc Antibody 9e10 Fab
Fragment
pdb|2ORB|I Chain I, The Structure Of The Anti-C-Myc Antibody 9e10 Fab
Fragment
Length = 228
Score = 29.6 bits (65), Expect = 0.49, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRPH--ITWKRE 48
ES D++ P GG++KL C A G+ H ++W R+
Sbjct: 6 ESGGDLVKP-GGSLKLSCAASGFTFSHYGMSWVRQ 39
>pdb|4DVB|A Chain A, The Crystal Structure Of The Fab Fragment Of Pro-upa
Antibody Mab-112
pdb|4DVB|H Chain H, The Crystal Structure Of The Fab Fragment Of Pro-upa
Antibody Mab-112
Length = 213
Score = 29.3 bits (64), Expect = 0.52, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKG--YPRPHITWKRE 48
+ES D++ P GG++KL C A G + R ++W R+
Sbjct: 5 QESGGDLVKP-GGSLKLSCSASGFTFSRYAMSWVRQ 39
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In
Space Group P3221
Length = 404
Score = 29.3 bits (64), Expect = 0.52, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 5 DVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKR 47
++ PP I + + I+ P I + C+AKG P P W R
Sbjct: 12 ELTQPPTITKQSAKDHIVDPRD-NILIECEAKGNPAPSFHWTR 53
Score = 29.3 bits (64), Expect = 0.65, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRPHITW 45
+E + I+AP G +LVC+A G P+P + W
Sbjct: 317 DEPKNLILAP-GEDGRLVCRANGNPKPTVQW 346
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG 50
P + + ++S M G + L C A G P P I W ++ G
Sbjct: 220 PSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGG 261
>pdb|4DW2|H Chain H, The Crystal Structure Of Upa In Complex With The Fab
Fragment Of Mab- 112
Length = 212
Score = 29.3 bits (64), Expect = 0.53, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKG--YPRPHITWKRE 48
+ES D++ P GG++KL C A G + R ++W R+
Sbjct: 5 QESGGDLVKP-GGSLKLSCSASGFTFSRYAMSWVRQ 39
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 33 CKAKGYPRPHITWKREDGQEI 53
CKA G P P I W R DG +
Sbjct: 26 CKASGNPMPEIIWIRSDGTAV 46
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 33 CKAKGYPRPHITWKREDGQEI 53
CKA G P P I W R DG +
Sbjct: 32 CKASGNPMPEIIWIRSDGTAV 52
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 28 TIKLVCKAKGYPRPHITWKR 47
TI L+C A+G+P P W +
Sbjct: 235 TISLLCPAQGFPAPSFRWYK 254
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 33 CKAKGYPRPHITWKREDGQEI 53
CKA G P P I W R DG +
Sbjct: 26 CKASGNPMPEIIWIRSDGTAV 46
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 28 TIKLVCKAKGYPRPHITWKR 47
TI L+C A+G+P P W +
Sbjct: 229 TISLLCPAQGFPAPSFRWYK 248
>pdb|1EAP|A Chain A, Crystal Structure Of A Catalytic Antibody With A Serine
Protease Active Site
Length = 213
Score = 28.9 bits (63), Expect = 0.82, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITW---KREDGQEIIIKEGNTMVP 63
DI +S S + A GG + + CKA + +I W K G ++I +T++P
Sbjct: 1 DIELTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKGPRLLIHYTSTLLP 56
>pdb|1QLE|H Chain H, Cryo-structure Of The Paracoccus Denitrificans
Four-subunit Cytochrome C Oxidase In The Completely
Oxidized State Complexed With An Antibody Fv Fragment
Length = 119
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRPHIT--WKRE 48
+ES D++ P GG++KL C A G+ T W R+
Sbjct: 5 QESGGDLVQP-GGSLKLSCAASGFTFSSYTMSWVRQ 39
>pdb|1IGF|H Chain H, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
pdb|2IGF|H Chain H, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
pdb|1IGF|J Chain J, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
Length = 221
Score = 28.5 bits (62), Expect = 0.88, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKG--YPRPHITWKRE 48
ES D++ P GG++KL C A G + R ++W R+
Sbjct: 6 ESGGDLVKP-GGSLKLSCAASGFTFSRCAMSWVRQ 39
>pdb|3K1K|C Chain C, Green Fluorescent Protein Bound To Minimizer Nanobody
pdb|3K1K|D Chain D, Green Fluorescent Protein Bound To Minimizer Nanobody
Length = 123
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYP--RPHITWKRE 48
ES ++ P GG+++L C A G+P R + W R+
Sbjct: 8 ESGGALVQP-GGSLRLSCAASGFPVNRYSMRWYRQ 41
>pdb|3QSK|B Chain B, 5 Histidine Variant Of The Anti-Rnase A Vhh In Complex
With Rnase A
Length = 123
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 18 SSDIMAPEGGTIKLVCKAKGYPRPHI--TWKRE 48
S + GG+++L C A GY P+I W R+
Sbjct: 9 SGGGLVQAGGSLRLSCAASGYHHPYIYMGWFRQ 41
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 28.5 bits (62), Expect = 0.95, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKR 47
SD A G ++ C A G PRP + W R
Sbjct: 301 SDTEADIGSNLRWGCAAAGKPRPTVRWLR 329
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 26 GGTIKLVCKAKGYPRPHITWKREDG 50
G + L C A G P P I W++ DG
Sbjct: 221 GQQVTLECFAFGNPVPRIKWRKVDG 245
>pdb|3OGO|E Chain E, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|F Chain F, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|G Chain G, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|H Chain H, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
Length = 123
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYP--RPHITWKRE 48
ES ++ P GG+++L C A G+P R + W R+
Sbjct: 7 ESGGALVQP-GGSLRLSCAASGFPVNRYSMRWYRQ 40
>pdb|3IY0|H Chain H, Variable Domains Of The X-Ray Structure Of Fab 14 Fitted
Into The Cryoem Reconstruction Of The Virus-Fab 14
Complex
Length = 120
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRPH--ITWKRE 48
++S ++++AP GG +KL C A GY + + W R+
Sbjct: 5 QQSGTELVAP-GGGVKLSCGASGYTFTNYDMNWVRQ 39
>pdb|1MLB|B Chain B, Monoclonal Antibody Fab D44.1 Raised Against Chicken
Egg- White Lysozyme
pdb|1MLC|B Chain B, Monoclonal Antibody Fab D44.1 Raised Against Chicken
Egg- White Lysozyme Complexed With Lysozyme
pdb|1MLC|D Chain D, Monoclonal Antibody Fab D44.1 Raised Against Chicken
Egg- White Lysozyme Complexed With Lysozyme
Length = 218
Score = 28.5 bits (62), Expect = 0.98, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
+ES +++M P G ++K+ CKA GY
Sbjct: 5 QESGAEVMKP-GASVKISCKATGY 27
>pdb|1AR1|C Chain C, Structure At 2.7 Angstrom Resolution Of The Paracoccus
Denitrificans Two-Subunit Cytochrome C Oxidase
Complexed With An Antibody Fv Fragment
pdb|1MQK|H Chain H, Crystal Structure Of The Unliganded Fv-Fragment Of The
Anti- Cytochrome C Oxidase Antibody 7e2
pdb|3EHB|C Chain C, A D-Pathway Mutation Decouples The Paracoccus
Denitrificans Cytochrome C Oxidase By Altering The Side
Chain Orientation Of A Distant, Conserved Glutamate
pdb|3HB3|C Chain C, High Resolution Crystal Structure Of Paracoccus
Denitrificans Cytochrome C Oxidase
Length = 127
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRPHIT--WKRE 48
+ES D++ P GG++KL C A G+ T W R+
Sbjct: 5 QESGGDLVQP-GGSLKLSCAASGFTFSSYTMSWVRQ 39
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain
Of Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 25 EGGTIKLVCKAKGYPRPHITWKRED 49
EG ++KL C+ P P + WKR +
Sbjct: 29 EGDSVKLECQISAIPPPKLFWKRNN 53
>pdb|1FJ1|A Chain A, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
pdb|1FJ1|C Chain C, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
Length = 213
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITW---KREDGQEIIIKEGNTMVPKSKD 67
DI +S S + A GG + + CKA +I W K G ++I +T+ P +
Sbjct: 1 DIQMTQSPSSLSATLGGKVTITCKASQDINKYIAWYQHKPGKGPRLLIHYTSTLQPGNPS 60
Query: 68 IF 69
F
Sbjct: 61 RF 62
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQE 52
+ P T++ C A G P P I+W + +G+E
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLK-NGRE 163
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
L V+VPP + + + +G T+ C A+G P P +TW E
Sbjct: 112 LRVLVPP-LPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTE 155
>pdb|1P2C|B Chain B, Crystal Structure Analysis Of An Anti-Lysozyme Antibody
pdb|1P2C|E Chain E, Crystal Structure Analysis Of An Anti-Lysozyme Antibody
Length = 218
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
+ES +++M P G ++K+ CKA GY
Sbjct: 5 QESGAELMKP-GASVKISCKATGY 27
>pdb|2Q76|B Chain B, Mouse Anti-Hen Egg White Lysozyme Antibody F10.6.6 Fab
Fragment
pdb|2Q76|D Chain D, Mouse Anti-Hen Egg White Lysozyme Antibody F10.6.6 Fab
Fragment
Length = 216
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
E+S +++M P G ++K+ CKA GY
Sbjct: 5 EQSGAELMKP-GASVKISCKATGY 27
>pdb|4HFU|H Chain H, Crystal Structure Of Fab 8m2 In Complex With A H2n2
Influenza Virus Hemagglutinin
Length = 226
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKG--YPRPHITWKRE 48
ES +D M P G ++K+ CKA G + ITW R+
Sbjct: 6 ESGAD-MKPPGSSVKVPCKASGDTFSSYTITWVRQ 39
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
PP IL ++ + GT L CKA G P P I+W +E
Sbjct: 8 PPIILQGPANQTLAVD--GTALLKCKATGDPLPVISWLKE 45
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQE 52
+ P T++ C A G P P I+W + +G+E
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSISWLK-NGRE 55
>pdb|2ADF|L Chain L, Crystal Structure And Paratope Determination Of 82d6a3,
An Antithrombotic Antibody Directed Against The Von
Willebrand Factor A3-Domain
Length = 209
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITW---KREDGQEIIIKEGNTMVP 63
DI +S S + A GG + + CKA +I W K G ++I +T+ P
Sbjct: 1 DIQMTQSPSSLSASLGGKVTITCKASQDINKYIAWYQHKPGKGPRLLIHYTSTLQP 56
>pdb|3SM5|H Chain H, Influenza Hemagglutinin In Complex With A Neutralizing
Antibody
pdb|3SM5|I Chain I, Influenza Hemagglutinin In Complex With A Neutralizing
Antibody
pdb|3SM5|J Chain J, Influenza Hemagglutinin In Complex With A Neutralizing
Antibody
Length = 227
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRP--HITWKRE 48
+S +++ P G ++K+ CKA GY HI W R+
Sbjct: 6 QSGAEVKKP-GASVKVSCKASGYTFTDYHINWVRQ 39
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 26 GGTIKLVCKAKGYPRPHITWKRE 48
GGT+ L C+ P P I W ++
Sbjct: 18 GGTVTLTCEVPAQPSPQIHWMKD 40
>pdb|1A7Q|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) High Affinity Expressed Variant Containing
Ser26l->gly, Ile29l->thr, Glu81l->asp, Thr97l->ser,
Pro240h->leu, Asp258h->ala, Lys281h->glu, Asn283h->asp
And Leu312h->val
Length = 106
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DI+ +S + + A G T+ + C+A G ++ W ++
Sbjct: 1 DIVLTQSPASLSASVGETVTITCRAGGNTHNYLAWYQQ 38
>pdb|1AXS|H Chain H, Mature Oxy-Cope Catalytic Antibody With Hapten
pdb|1AXS|B Chain B, Mature Oxy-Cope Catalytic Antibody With Hapten
Length = 221
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES +++M P G ++K+ CKA GY
Sbjct: 6 ESGAELMKP-GASVKISCKATGY 27
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From
Human Advanced Glycosylation End Product-Specific
Receptor
Length = 96
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 26 GGTIKLVCKAKGYPRPHITWKRE 48
GGT+ L C+ P P I W ++
Sbjct: 25 GGTVTLTCEVPAQPSPQIHWMKD 47
>pdb|2V17|L Chain L, Structure Of The Complex Of Antibody Mn423 With A
Fragment Of Tau Protein
pdb|3L1O|L Chain L, Crystal Structure Of Monoclonal Antibody Mn423 Fab
Fragment With Free Combining Site, Crystallized In The
Presence Of Zinc
Length = 214
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE---DGQEIIIKEGNTM 61
D+ +S S + A G TI + C+A R + W RE +++I G+T+
Sbjct: 1 DVQITQSPSYLAASPGETITINCRASKSIRKFLAWYREKPGKTNKLLIYSGSTL 54
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRPHITWK 46
++ D+ EG ++ CK G P P ++W+
Sbjct: 14 QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQ 44
>pdb|1H8N|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment From Phage-Displayed Murine Antibody
Libraries
Length = 252
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRPH--ITW-KREDGQ 51
+ES +++ P G ++KL CKA GY I W K+ GQ
Sbjct: 136 QESGGELVRP-GASVKLSCKASGYTFTSYWINWVKQRPGQ 174
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 25 EGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKD 67
EG + C+ G P+P I W + DG++I K + + + D
Sbjct: 22 EGMPVTFTCRVAGNPKPKIYWFK-DGKQISPKSDHYTIQRDLD 63
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 25 EGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKD 67
EG + C+ G P+P I W + DG++I K + + + D
Sbjct: 21 EGMPVTFTCRVAGNPKPKIYWFK-DGKQISPKSDHYTIQRDLD 62
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 26 GGTIKLVCKAKGYPRPHITWKRED-----GQEIIIKEGN 59
G +I++ C A G P P I W +++ I++K+GN
Sbjct: 681 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN 719
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
++ EG T G+P P ++W R DGQ I
Sbjct: 14 SVVVLEGSTATFEAHISGFPVPEVSWFR-DGQVI 46
>pdb|1G7M|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92v)
Length = 107
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DI+ +S + + A G T+ + C+A G ++ W ++
Sbjct: 1 DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1G7I|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92f)
Length = 107
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DI+ +S + + A G T+ + C+A G ++ W ++
Sbjct: 1 DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 1 MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRED-----GQEIII 55
+ L+ V P N E+ + + G +I++ C A G P P I W +++ I++
Sbjct: 3 LTVLERVAPTITGNLENQTTSI---GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL 59
Query: 56 KEGN 59
K+GN
Sbjct: 60 KDGN 63
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
++ EG T G+P P ++W R DGQ I
Sbjct: 14 SVVVLEGSTATFEAHISGFPVPEVSWFR-DGQVI 46
>pdb|1A7O|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) R96l Deletion Mutant On Variant For Chain L
Glu81->asp And Chain H Leu312->val
Length = 106
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DI+ +S + + A G T+ + C+A G ++ W ++
Sbjct: 1 DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1G7H|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3(Vlw92a)
Length = 107
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DI+ +S + + A G T+ + C+A G ++ W ++
Sbjct: 1 DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|3BGF|H Chain H, X-Ray Crystal Structure Of The Sars Coronavirus Spike
Receptor Binding Domain In Complex With F26g19 Fab
pdb|3BGF|B Chain B, X-Ray Crystal Structure Of The Sars Coronavirus Spike
Receptor Binding Domain In Complex With F26g19 Fab
Length = 220
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
E S ++A G ++K+ CKA GY
Sbjct: 5 EESGTVLARPGASVKMSCKASGY 27
>pdb|3OJD|A Chain A, Anti-Indolicidin Monoclonal Antibody V2d2 (Fab Fragment)
Length = 214
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG 50
DI+ ++ + + A G ++ + CKA G ++ W ++ G
Sbjct: 1 DIVMTQTPASLSASVGESVTITCKASGNIHNYLAWYQQKG 40
>pdb|1A7P|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) Engineered Mutant Pro95l->ser On Variant Chain
L Glu81- >asp And Chain H Leu312->val
Length = 107
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DI+ +S + + A G T+ + C+A G ++ W ++
Sbjct: 1 DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1G7J|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92h)
Length = 107
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DI+ +S + + A G T+ + C+A G ++ W ++
Sbjct: 1 DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|2NTF|H Chain H, Crystal Structure Of A Quorum-Quenching Antibody In
Complex With An N- Acyl-L-Homoserine Lactone Analog
pdb|2NTF|B Chain B, Crystal Structure Of A Quorum-Quenching Antibody In
Complex With An N- Acyl-L-Homoserine Lactone Analog
pdb|2OP4|H Chain H, Crystal Structure Of Quorum-Quenching Antibody 1g9
Length = 222
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S S+++ P G ++KL CKA GY
Sbjct: 5 QQSGSELVRP-GASVKLSCKASGY 27
>pdb|1A7N|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) Variant For Chain L Glu81->asp And Chain H
Leu312->val
pdb|1A7R|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) Variant Chain L Glu81->asp
Length = 107
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DI+ +S + + A G T+ + C+A G ++ W ++
Sbjct: 1 DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1G7L|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92s)
Length = 107
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DI+ +S + + A G T+ + C+A G ++ W ++
Sbjct: 1 DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1ZTX|H Chain H, West Nile Virus Envelope Protein Diii In Complex With
Neutralizing E16 Antibody Fab
Length = 219
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S S++M P G ++++ CKA GY
Sbjct: 5 QQSGSELMKP-GASVQISCKATGY 27
>pdb|3JUY|B Chain B, Crystal Structure Of A 3b3 Variant, A Broadly
Neutralizing Hiv-1 Scfv Antibody
pdb|3JUY|A Chain A, Crystal Structure Of A 3b3 Variant, A Broadly
Neutralizing Hiv-1 Scfv Antibody
pdb|3JUY|C Chain C, Crystal Structure Of A 3b3 Variant, A Broadly
Neutralizing Hiv-1 Scfv Antibody
pdb|3JUY|E Chain E, Crystal Structure Of A 3b3 Variant, A Broadly
Neutralizing Hiv-1 Scfv Antibody
pdb|3JUY|F Chain F, Crystal Structure Of A 3b3 Variant, A Broadly
Neutralizing Hiv-1 Scfv Antibody
pdb|3JUY|D Chain D, Crystal Structure Of A 3b3 Variant, A Broadly
Neutralizing Hiv-1 Scfv Antibody
Length = 256
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRPHIT--WKRE 48
+S +++ P G ++K+ C+A GY H T W R+
Sbjct: 12 QSGAEVKKP-GASVKVSCQASGYRFSHFTVHWVRQ 45
>pdb|1KIP|A Chain A, Fv Mutant Y(B 32)a (Vh Domain) Of Mouse Monoclonal
Antibody D1.3 Complexed With Hen Egg White Lysozyme
pdb|1KIQ|A Chain A, Fv Mutant Y(B 101)f (Vh Domain) Of Mouse Monoclonal
Antibody D1.3 Complexed With Hen Egg White Lysozyme
pdb|1A2Y|A Chain A, Hen Egg White Lysozyme, D18a Mutant, In Complex With
Mouse Monoclonal Antibody D1.3
pdb|1VFB|A Chain A, Bound Water Molecules And Conformational Stabilization
Help Mediate An Antigen-Antibody Association
Length = 107
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DI+ +S + + A G T+ + C+A G ++ W ++
Sbjct: 1 DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1KIR|A Chain A, Fv Mutant Y(A 50)s (Vl Domain) Of Mouse Monoclonal
Antibody D1.3 Complexed With Hen Egg White Lysozyme
Length = 107
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DI+ +S + + A G T+ + C+A G ++ W ++
Sbjct: 1 DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1YQV|H Chain H, The Crystal Structure Of The Antibody Fab Hyhel5 Complex
With Lysozyme At 1.7a Resolution
Length = 215
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S +++M P G ++K+ CKA GY
Sbjct: 5 QQSGAELMKP-GASVKISCKASGY 27
>pdb|1D5B|B Chain B, Unliganded Mature Oxy-Cope Catalytic Antibody
pdb|1D5B|H Chain H, Unliganded Mature Oxy-Cope Catalytic Antibody
Length = 221
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S +++M P G ++K+ CKA GY
Sbjct: 5 QQSGAELMKP-GASVKISCKATGY 27
>pdb|1D5I|H Chain H, Unliganded Germline Precursor Of An Oxy-Cope Catalytic
Antibody
pdb|1D6V|H Chain H, Conformation Effects In Biological Catalysis Introduced
By Oxy-Cope Antibody Maturation
Length = 221
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S +++M P G ++K+ CKA GY
Sbjct: 5 QQSGAELMKP-GASVKISCKATGY 27
>pdb|1VFA|A Chain A, Bound Water Molecules And Conformational Stabilization
Help Mediate An Antigen-Antibody Association
pdb|1DVF|A Chain A, Idiotopic Antibody D1.3 Fv Fragment-Antiidiotopic
Antibody E5.2 Fv Fragment Complex
Length = 108
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DI+ +S + + A G T+ + C+A G ++ W ++
Sbjct: 1 DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1MIM|H Chain H, Igg Fab Fragment (Cd25-Binding)
pdb|3IU3|A Chain A, Crystal Structure Of The Fab Fragment Of Therapeutic
Antibody Basiliximab In Complex With Il-2ra (Cd25)
Ectodomain
pdb|3IU3|C Chain C, Crystal Structure Of The Fab Fragment Of Therapeutic
Antibody Basiliximab In Complex With Il-2ra (Cd25)
Ectodomain
pdb|3IU3|H Chain H, Crystal Structure Of The Fab Fragment Of Therapeutic
Antibody Basiliximab In Complex With Il-2ra (Cd25)
Ectodomain
Length = 215
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYP--RPHITW-KREDGQ 51
+ S ++A G ++K+ CKA GY R + W K+ GQ
Sbjct: 3 QQSGTVLARPGASVKMSCKASGYSFTRYWMHWIKQRPGQ 41
>pdb|3RPI|L Chain L, Crystal Structure Of Fab From 3bnc60, Highly Potent
Anti-Hiv Antibody
pdb|3RPI|B Chain B, Crystal Structure Of Fab From 3bnc60, Highly Potent
Anti-Hiv Antibody
Length = 206
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITW---KREDGQEIIIKEGNTM 61
DI +S S + A G T+ + C+A GY + W +R +++I +G+ +
Sbjct: 1 DIQMTQSPSSLSARVGDTVTITCQANGY----LNWYQQRRGKAPKLLIYDGSKL 50
>pdb|3VI3|H Chain H, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI3|F Chain F, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI4|H Chain H, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
pdb|3VI4|F Chain F, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
Length = 218
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S +++M P G ++K+ CKA GY
Sbjct: 5 QQSGAELMKP-GASVKISCKATGY 27
>pdb|2V7H|B Chain B, Crystal Structure Of An Immunogen Specific Anti-
Mannopyranoside Monoclonal Antibody Fab Fragment
pdb|2V7H|H Chain H, Crystal Structure Of An Immunogen Specific Anti-
Mannopyranoside Monoclonal Antibody Fab Fragment
Length = 220
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S +++M P G ++K+ CKA GY
Sbjct: 5 QQSGAELMKP-GASVKISCKATGY 27
>pdb|1L7T|H Chain H, Crystal Structure Analysis Of The Anti-Testosterone Fab
Fragment
pdb|1VPO|H Chain H, Crystal Structure Analysis Of The Anti-testosterone Fab
In Complex With Testosterone
Length = 221
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKG--YPRPHITWKREDGQE------IIIKEGNT 60
ES ++ P GG++KL C A G + R ++W R+ + I+ GNT
Sbjct: 6 ESGGGLVKP-GGSLKLSCAASGFTFSRYALSWVRQTADKRLEWVASIVSGGNT 57
>pdb|2IFF|H Chain H, Structure Of An Antibody-Lysozyme Complex: Effect Of A
Conservative Mutation
pdb|1BQL|H Chain H, Structure Of An Anti-Hel Fab Fragment Complexed With
Bobwhite Quail Lysozyme
Length = 215
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S +++M P G ++K+ CKA GY
Sbjct: 5 QQSGAELMKP-GASVKISCKASGY 27
>pdb|4EOW|H Chain H, Crystal Structure Of A Disease-Associated Anti-Human
Gm-Csf Autoantibody Mb007
Length = 228
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY--PRPHITWKRE 48
+S S++ P G ++K+ CKA GY R I W R+
Sbjct: 6 QSGSELKKP-GASVKVSCKASGYSFSRYGIKWVRQ 39
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 26 GGTIKLVCKAKGYPRPHITWKRE 48
GG+++L C+A G P P I W E
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFE 58
>pdb|3TT1|H Chain H, Crystal Structure Of Leut In The Outward-Open
Conformation In Complex With Fab
pdb|3TT1|I Chain I, Crystal Structure Of Leut In The Outward-Open
Conformation In Complex With Fab
Length = 219
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRP--HITW-KREDGQ 51
++S +++ P G ++KL CKA GY +I W K+ GQ
Sbjct: 5 QQSGAELARP-GASVKLSCKASGYTFTDYYINWMKQRTGQ 43
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 26 GGTIKLVCKAKGYPRPHITWKRE 48
GG+++L C+A G P P I W E
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFE 58
>pdb|4AG4|H Chain H, Crystal Structure Of A Ddr1-Fab Complex
Length = 215
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRPHITW----KREDGQ 51
+ES ++++ P G ++KL CKA GY I+W K+ GQ
Sbjct: 5 QESGAELVRP-GASVKLSCKASGYTFS-ISWINWVKQRPGQ 43
>pdb|2ZJS|H Chain H, Crystal Structure Of Secye Translocon From Thermus
Thermophilus With A Fab Fragment
Length = 221
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S +++M P G ++K+ CKA GY
Sbjct: 5 QQSGAELMKP-GASVKISCKATGY 27
>pdb|2R4R|H Chain H, Crystal Structure Of The Human Beta2 Adrenoceptor
pdb|2R4S|H Chain H, Crystal Structure Of The Human Beta2 Adrenoceptor
pdb|3KJ6|H Chain H, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 217
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY--PRPHITWKRE 48
++S +++ P G ++KL CKA GY +I W R+
Sbjct: 5 QQSGAELARP-GASVKLSCKASGYIFTDYYINWVRQ 39
>pdb|1MPA|H Chain H, Bactericidal Antibody Against Neisseria Meningitidis
pdb|1MNU|H Chain H, Unliganded Bactericidal Antibody Against Neisseria
Meningitidis
pdb|2MPA|H Chain H, Bactericidal Antibody Against Neisseria Meningitidis
Length = 225
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 13 LNEESSSDIMAPEGGTIKLVCKAKGY 38
+N + S ++A G ++++ CKA GY
Sbjct: 2 VNLQQSGTVLARPGASVRMSCKASGY 27
>pdb|3OZ9|H Chain H, Crystal Structure Of Anti-Gp41 Fab Nc-1
Length = 219
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S +++M P G ++K+ CKA GY
Sbjct: 5 QQSGTELMKP-GSSVKISCKATGY 27
>pdb|3IY1|B Chain B, Variable Domains Of The Wam Of Fab B Fitted Into The
Cryoem Reconstruction Of The Virus-Fab B Complex
Length = 109
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 22 MAPEGGTIKLVCKAKGY--PRPHITW-KREDGQEI 53
+A G ++K+ CKA GY +I+W K+ GQ +
Sbjct: 5 LAKPGSSVKISCKASGYTFTNYYISWIKQTTGQGL 39
>pdb|4HBC|L Chain L, Crystal Structure Of A Conformation-Dependent Rabbit Igg
Fab Specific For Amyloid Prefibrillar Oligomers
Length = 213
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITW-KREDGQ--EIIIKEGNTM 61
D++ ++ + + P GGT+ + C+A ++ W +++ GQ ++I E +T+
Sbjct: 1 DVVMTQTPASVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTL 54
>pdb|2OJZ|H Chain H, Anti-Dna Antibody Ed10
pdb|2OJZ|I Chain I, Anti-Dna Antibody Ed10
pdb|2OK0|H Chain H, Fab Ed10-Dna Complex
Length = 216
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRP--HITWKRE 48
EES +++ P G ++K+ CKA GY ++ W R+
Sbjct: 5 EESGPELVKP-GASVKISCKASGYTFTDYYMNWLRQ 39
>pdb|2C1O|A Chain A, Enaiihis Fab Fragment In The Free Form
pdb|2C1O|L Chain L, Enaiihis Fab Fragment In The Free Form
Length = 254
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRPH--ITWKRE 48
++S ++++ P G ++KL CKA GY + + W RE
Sbjct: 4 QQSGAELVRP-GTSVKLSCKASGYSFTNYWMNWLRE 38
>pdb|1Q0Y|H Chain H, Anti-Morphine Antibody 9b1 Complexed With Morphine
Length = 221
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S +++M P G ++K+ CKA GY
Sbjct: 5 QQSGAELMKP-GASVKISCKATGY 27
>pdb|1Q0X|H Chain H, Anti-Morphine Antibody 9b1 Unliganded Form
Length = 221
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S +++M P G ++K+ CKA GY
Sbjct: 5 QQSGAELMKP-GASVKISCKATGY 27
>pdb|3VG9|B Chain B, Crystal Structure Of Human Adenosine A2a Receptor With
An Allosteric Inverse-Agonist Antibody At 2.7 A
Resolution
pdb|3VGA|B Chain B, Crystal Structure Of Human Adenosine A2a Receptor With
An Allosteric Inverse-Agonist Antibody At 3.1 A
Resolution
Length = 214
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DI+ +S + + A G T+ + C+A + +TW ++
Sbjct: 1 DIVMTQSPASLSASVGDTVTITCRASEFIYSSLTWYQQ 38
>pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit
Length = 716
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54
LD+V PD E ++I+ K+ +G R WK+EDG +I
Sbjct: 181 LDIVQGPDYPTE---AEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVI 228
>pdb|1EJO|H Chain H, Fab Fragment Of Neutralising Monoclonal Antibody 4c4
Complexed With G-H Loop From Fmdv
Length = 220
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRPHIT--WKRE 48
ES D++ P GG++KL C A G+ T W R+
Sbjct: 6 ESGGDLVKP-GGSLKLSCAASGFTFSSYTMSWVRQ 39
>pdb|2H2P|C Chain C, Crystal Structure Of Clc-Ec1 In Complex With Fab
Fragment In Secn-
pdb|2H2P|E Chain E, Crystal Structure Of Clc-Ec1 In Complex With Fab
Fragment In Secn-
pdb|2H2S|C Chain C, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|2H2S|E Chain E, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|2HLF|C Chain C, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HLF|E Chain E, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HT2|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT2|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT3|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT3|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT4|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HT4|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HTK|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTK|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTL|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2HTL|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2R9H|C Chain C, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|2R9H|E Chain E, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|3DET|C Chain C, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
pdb|3DET|E Chain E, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
pdb|3EJY|C Chain C, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER,
CLC- Ec1
pdb|3EJY|E Chain E, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER,
CLC- Ec1
pdb|3EJZ|C Chain C, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER,
CLC-Ec1
pdb|3EJZ|E Chain E, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER,
CLC-Ec1
Length = 221
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKG--YPRPHITWKRE 48
ES ++ P GG++KL C A G Y R ++W R+
Sbjct: 5 ESGGGLVQP-GGSLKLSCAASGFDYSRYWMSWVRQ 38
>pdb|1CZ8|H Chain H, Vascular Endothelial Growth Factor In Complex With An
Affinity Matured Antibody
pdb|1CZ8|Y Chain Y, Vascular Endothelial Growth Factor In Complex With An
Affinity Matured Antibody
Length = 218
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRPH--ITWKRE 48
ES ++ P GG+++L C A GY H + W R+
Sbjct: 6 ESGGGLVQP-GGSLRLSCAASGYDFTHYGMNWVRQ 39
>pdb|1NQB|A Chain A, Trivalent Antibody Fragment
pdb|1NQB|C Chain C, Trivalent Antibody Fragment
Length = 256
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S ++++ P G ++KL CKA GY
Sbjct: 5 QQSGAELVKP-GASVKLSCKASGY 27
>pdb|1A0Q|L Chain L, 29g11 Complexed With Phenyl
[1-(1-N-Succinylamino)pentyl] Phosphonate
Length = 212
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITW-KREDGQE--IIIKEGNTMVP 63
DI +S S + A GG + + CKA + +I W + + G++ ++I +T++P
Sbjct: 1 DIELTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLP 56
>pdb|1OTS|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
And Fab Complex
pdb|1OTS|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
And Fab Complex
pdb|1OTT|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|1OTT|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|1OTU|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|1OTU|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|2FEC|J Chain J, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER
CLC- Ec1 From E.Coli
pdb|2FEC|I Chain I, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER
CLC- Ec1 From E.Coli
pdb|2FED|C Chain C, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER
CLC- Ec1 From E.Coli
pdb|2FED|E Chain E, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER
CLC- Ec1 From E.Coli
pdb|2FEE|J Chain J, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2FEE|I Chain I, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2EXW|C Chain C, Crystal Structure Of A Ecclc-Fab Complex In The Absence
Of Bound Ions
pdb|2EXW|E Chain E, Crystal Structure Of A Ecclc-Fab Complex In The Absence
Of Bound Ions
pdb|2EXY|C Chain C, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EXY|E Chain E, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EZ0|C Chain C, Crystal Structure Of The S107aE148QY445A MUTANT OF
ECCLC, In Complex With A Fab Fragment
pdb|2EZ0|E Chain E, Crystal Structure Of The S107aE148QY445A MUTANT OF
ECCLC, In Complex With A Fab Fragment
pdb|4FG6|C Chain C, Structure Of Ecclc E148a Mutant In Glutamate
pdb|4FG6|E Chain E, Structure Of Ecclc E148a Mutant In Glutamate
pdb|4ENE|C Chain C, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
pdb|4ENE|E Chain E, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
Length = 222
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKG--YPRPHITWKRE 48
ES ++ P GG++KL C A G Y R ++W R+
Sbjct: 6 ESGGGLVQP-GGSLKLSCAASGFDYSRYWMSWVRQ 39
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNT 60
P I + D + E T +C + YP+P I+W R +I+IK +T
Sbjct: 8 PVITTPLETVDALVEEVAT--FMCAVESYPQPEISWTR---NKILIKLFDT 53
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRED 49
E +S + P G T+ L C A G P PH W + +
Sbjct: 124 EPTSQKLMP-GSTLVLQCVAVGSPIPHYQWFKNE 156
>pdb|3CLF|H Chain H, Hiv Neutralizing Monoclonal Antibody Yz23
Length = 220
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
+ES ++++ P G ++K+ CKA GY
Sbjct: 5 QESGAELVRP-GASVKMSCKASGY 27
>pdb|3CLE|H Chain H, Hiv Neutralizing Monoclonal Antibody Yz23
Length = 220
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
+ES ++++ P G ++K+ CKA GY
Sbjct: 5 QESGAELVRP-GASVKMSCKASGY 27
>pdb|1MFB|H Chain H, High Resolution Structures Of Antibody Fab Fragment
Complexed With Cell-Surface Oligosaccharide Of
Pathogenic Salmonella
pdb|1MFC|H Chain H, High Resolution Structures Of Antibody Fab Fragment
Complexed With Cell-Surface Oligosaccharide Of
Pathogenic Salmonella
pdb|1MFD|H Chain H, The Solution Structure Of A Trisaccharide-Antibody
Complex: Comparison Of Nmr Measurements With A Crystal
Structure
pdb|1MFE|H Chain H, Recognition Of A Cell-Surface Oligo-Saccharide Of
Pathogenic Salmonella By An Antibody Fab Fragment
Length = 219
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+ S ++A G ++K+ CKA GY
Sbjct: 5 QQSGTVLARPGASVKMSCKASGY 27
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 26 GGTIKLVCKAKGYPRPHITW 45
GG ++ VCK +PHI W
Sbjct: 133 GGDVEFVCKVYSDAQPHIQW 152
>pdb|3O0R|H Chain H, Crystal Structure Of Nitric Oxide Reductase From
Pseudomonas Aeruginosa In Complex With Antibody
Fragment
Length = 225
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+ S ++A G ++K+ CKA GY
Sbjct: 5 QQSGTVLARPGASVKMSCKASGY 27
>pdb|1UWX|H Chain H, P1.2 Serosubtype Antigen Derived From N. Meningitidis
Pora In Complex With Fab Fragment
pdb|1UWX|M Chain M, P1.2 Serosubtype Antigen Derived From N. Meningitidis
Pora In Complex With Fab Fragment
Length = 225
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGY 38
D+ ++S ++ P G T+KL CKA GY
Sbjct: 1 DVQLQQSGPELKKP-GETVKLSCKASGY 27
>pdb|1KEG|H Chain H, Antibody 64m-2 Fab Complexed With Dtt(6-4)tt
Length = 220
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+ S ++A G ++K+ CKA GY
Sbjct: 5 QQSGTVLARPGASVKMSCKASGY 27
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 20 DIMAPEGGTIKLVCKAKGYPRPHITWKR 47
D+ A G + L C A G P P I W++
Sbjct: 122 DVYALMGQNVTLECFALGNPVPDIRWRK 149
>pdb|1EAP|B Chain B, Crystal Structure Of A Catalytic Antibody With A Serine
Protease Active Site
Length = 216
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
+ES ++++ P G ++K+ CKA GY
Sbjct: 5 QESGTELVKP-GASVKISCKASGY 27
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 91
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRED 49
E +S + P G T+ L C A G P PH W + +
Sbjct: 9 EPTSQKLMP-GSTLVLQCVAVGSPIPHYQWFKNE 41
>pdb|1EHL|H Chain H, 64m-2 Antibody Fab Complexed With D(5ht)(6-4)t
Length = 219
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+ S ++A G ++K+ CKA GY
Sbjct: 5 QQSGTVLARPGASVKMSCKASGY 27
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 26 GGTIKLVCKAKGYPRPHITW 45
GG ++ VCK +PHI W
Sbjct: 133 GGDVEFVCKVYSDAQPHIQW 152
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homo1
Length = 118
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 27 GTIKLVCKAKGYPRPHITWKREDG 50
GT L C A G P P I W R+DG
Sbjct: 24 GTFVLSCVATGSPVPTILW-RKDG 46
>pdb|1NGX|B Chain B, Chimeric Germline Fab 7g12 With Jeffamine Fragment Bound
pdb|1NGX|H Chain H, Chimeric Germline Fab 7g12 With Jeffamine Fragment Bound
Length = 216
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++++ P G ++KL CKA GY
Sbjct: 6 ESGAELVKP-GASVKLSCKASGY 27
>pdb|1MRC|H Chain H, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
pdb|1MRD|H Chain H, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
pdb|1MRE|H Chain H, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
pdb|1MRF|H Chain H, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
Length = 215
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S ++++ P G ++KL CKA GY
Sbjct: 5 QQSGAELVKP-GASVKLSCKASGY 27
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 26 GGTIKLVCKAKGYPRPHITW 45
GG ++ VCK +PHI W
Sbjct: 132 GGDVEFVCKVYSDAQPHIQW 151
>pdb|1IFH|H Chain H, A Detailed Analysis Of The Free And Bound Conformation
Of An Antibody: X-Ray Structures Of Anti-Peptide Fab
17(Slash)9 And Three Different Fab-Peptide Complexes
pdb|1HIL|B Chain B, Structural Evidence For Induced Fit As A Mechanism For
Antigen-Antibody Recognition
pdb|1HIL|D Chain D, Structural Evidence For Induced Fit As A Mechanism For
Antigen-Antibody Recognition
pdb|1HIM|L Chain L, Structural Evidence For Induced Fit As A Mechanism For
Antibody-Antigen Recognition
pdb|1HIM|M Chain M, Structural Evidence For Induced Fit As A Mechanism For
Antibody-Antigen Recognition
pdb|1HIN|H Chain H, Structural Evidence For Induced Fit As A Mechanism For
Antibody-Antigen Recognition
Length = 220
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRPH--ITWKRE 48
ES D++ P GG++KL C A G+ ++W R+
Sbjct: 6 ESGGDLVKP-GGSLKLSCAASGFSFSSYGMSWVRQ 39
>pdb|1NGZ|B Chain B, Chimeric Germline Fab 7g12-Apo
Length = 220
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++++ P G ++KL CKA GY
Sbjct: 6 ESGAELVKP-GASVKLSCKASGY 27
>pdb|1N7M|L Chain L, Germline 7g12 With N-Methylmesoporphyrin
Length = 216
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++++ P G ++KL CKA GY
Sbjct: 6 ESGAELVKP-GASVKLSCKASGY 27
>pdb|3O11|H Chain H, Anti-Beta-Amyloid Antibody C706 Fab In Space Group C2
pdb|3O11|B Chain B, Anti-Beta-Amyloid Antibody C706 Fab In Space Group C2
pdb|3MCL|H Chain H, Anti-Beta-Amyloid Antibody C706 Fab In Space Group P21
Length = 228
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S ++M P G ++K+ CKA GY
Sbjct: 5 QQSGPELMKP-GASVKISCKATGY 27
>pdb|3FCT|B Chain B, Mature Metal Chelatase Catalytic Antibody With Hapten
pdb|3FCT|D Chain D, Mature Metal Chelatase Catalytic Antibody With Hapten
pdb|1NGW|H Chain H, Chimeric Affinity Matured Fab 7g12 Complexed With
Mesoporphyrin
pdb|1NGW|B Chain B, Chimeric Affinity Matured Fab 7g12 Complexed With
Mesoporphyrin
Length = 216
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++++ P G ++KL CKA GY
Sbjct: 6 ESGAELVKP-GASVKLSCKASGY 27
>pdb|1NGY|B Chain B, Chimeric Mature Fab 7g12-Apo
Length = 216
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++++ P G ++KL CKA GY
Sbjct: 6 ESGAELVKP-GASVKLSCKASGY 27
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 26 GGTIKLVCKAKGYPRPHITW 45
GG ++ VCK +PHI W
Sbjct: 125 GGDVEFVCKVYSDAQPHIQW 144
>pdb|3BSZ|H Chain H, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3BSZ|N Chain N, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
Length = 215
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+ S ++A G ++K+ CKA GY
Sbjct: 5 QESGTVLARPGASVKMSCKASGY 27
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 26 GGTIKLVCKAKGYPRPHITWKRE 48
G ++ +CK P+PHI W +
Sbjct: 130 GSNVEFMCKVYSDPQPHIQWLKH 152
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 26 GGTIKLVCKAKGYPRPHITWKRE 48
G ++ +CK P+PHI W +
Sbjct: 131 GSNVEFMCKVYSDPQPHIQWLKH 153
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 24 PEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
P T+K C + G P+P + W + +G+E
Sbjct: 30 PAAKTVKFKCPSSGTPQPTLRWLK-NGKEF 58
>pdb|2YPV|H Chain H, Crystal Structure Of The Meningococcal Vaccine Antigen
Factor H Binding Protein In Complex With A Bactericidal
Antibody
Length = 218
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRP--HITW-KREDGQEI 53
+ES +++ P G ++K+ CKA GY +++W K+ +G+ +
Sbjct: 5 QESGPELVKP-GASVKISCKASGYSFSDYNMSWVKQSNGKSL 45
>pdb|1DSF|H Chain H, The Crystal Structure Of The Disulfide-Stabilized Fv
Fragment Of Anticancer Antibody B1: Conformational
Influence Of An Engineered Disulfide Bond
Length = 119
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKG--YPRPHITWKREDGQEII-----IKEGNTMVPKSKDI 68
ES ++ P GG++KL C A G + ++ W R+ ++ + I +G T + S +
Sbjct: 4 ESGGGLVKP-GGSLKLSCAASGFIFSDNYMYWVRQTPEKCLEWVATISDGGTYIDYSDSV 62
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 26 GGTIKLVCKAKGYPRPHITWKRE 48
G ++ +CK P+PHI W +
Sbjct: 130 GSNVEFMCKVYSDPQPHIQWLKH 152
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 24 PEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
P T+K C + G P+P + W + +G+E
Sbjct: 29 PAAKTVKFKCPSSGTPQPTLRWLK-NGKEF 57
>pdb|2ADG|B Chain B, Crystal Structure Of Monoclonal Anti-Cd4 Antibody Q425
pdb|2ADI|B Chain B, Crystal Structure Of Monoclonal Anti-Cd4 Antibody Q425
In Complex With Barium
pdb|2ADJ|B Chain B, Crystal Structure Of Monoclonal Anti-Cd4 Antibody Q425
In Complex With Calcium
Length = 222
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRPH--ITWKRE 48
ES D++ P GG++KL C A G+ ++W R+
Sbjct: 6 ESGGDLVKP-GGSLKLSCAASGFTFSSYGMSWVRQ 39
>pdb|3FFD|A Chain A, Structure Of Parathyroid Hormone-Related Protein
Complexed To A Neutralizing Monoclonal Antibody
Length = 218
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES D++ P GG++KL C A G+
Sbjct: 6 ESGGDLVKP-GGSLKLSCAASGF 27
>pdb|1JHL|H Chain H, Three-Dimensional Structure Of A Heteroclitic Antigen-
Antibody Cross-Reaction Complex
Length = 116
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S ++++ P G ++KL CKA GY
Sbjct: 5 QQSGAELVRP-GASVKLSCKASGY 27
>pdb|1Y0L|H Chain H, Catalytic Elimination Antibody 34e4 In Complex With
Hapten
pdb|1Y0L|B Chain B, Catalytic Elimination Antibody 34e4 In Complex With
Hapten
pdb|1Y0L|D Chain D, Catalytic Elimination Antibody 34e4 In Complex With
Hapten
pdb|1Y0L|F Chain F, Catalytic Elimination Antibody 34e4 In Complex With
Hapten
Length = 226
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 22 MAPEGGTIKLVCKAKGYP--RPHITWKRE 48
+A GG++KL C A G+ R +TW R+
Sbjct: 11 LAQPGGSLKLSCAASGFDFRRYWMTWVRQ 39
>pdb|1Y18|H Chain H, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|B Chain B, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|D Chain D, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|F Chain F, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
Length = 226
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 22 MAPEGGTIKLVCKAKGYP--RPHITWKRE 48
+A GG++KL C A G+ R +TW R+
Sbjct: 11 LAQPGGSLKLSCAASGFDFRRYWMTWVRQ 39
>pdb|1A0Q|H Chain H, 29g11 Complexed With Phenyl
[1-(1-N-Succinylamino)pentyl] Phosphonate
Length = 217
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
+ES ++++ P G ++K+ CKA GY
Sbjct: 5 QESDAELVKP-GASVKISCKASGY 27
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 25 EGGTIKLVCKAKGYPRPHITWKREDGQ 51
EG + + C+ YP I+W R DGQ
Sbjct: 32 EGNQVNITCEVFAYPSATISWFR-DGQ 57
>pdb|1YUH|H Chain H, Fab Fragment
pdb|1YUH|B Chain B, Fab Fragment
Length = 218
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S ++++ P G ++KL CKA GY
Sbjct: 5 QQSGAELVKP-GASVKLSCKASGY 27
>pdb|1VGE|H Chain H, Tr1.9 Fab Fragment Of A Human Igg1 Kappa Autoantibody
Length = 225
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 13 LNEESSSDIMAPEGGTIKLVCKAKGY 38
L E+S +++ P G ++K+ CKA GY
Sbjct: 4 LLEQSGAEVKKP-GASVKVSCKASGY 28
>pdb|1A6T|B Chain B, Fab Fragment Of Mab1-Ia Monoclonal Antibody To Human
Rhinovirus 14 Nim-Ia Site
pdb|1A6T|D Chain D, Fab Fragment Of Mab1-Ia Monoclonal Antibody To Human
Rhinovirus 14 Nim-Ia Site
Length = 217
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S D++ P G ++K+ CKA GY
Sbjct: 5 QQSGPDLVKP-GASVKISCKASGY 27
>pdb|4A6Y|H Chain H, Crystal Structure Of Fab Fragment Of Anti-(4-Hydroxy-3-
Nitrophenyl)-Acetyl Murine Germline Antibody Bbe6.12h3
Length = 220
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++ ++++AP G ++KL CKA GY
Sbjct: 5 QQPKAELVAP-GASVKLSCKASGY 27
>pdb|3CFJ|H Chain H, Crystal Structure Of Catalytic Elimination Antibody
34e4, Orthorhombic Crystal Form
pdb|3CFJ|B Chain B, Crystal Structure Of Catalytic Elimination Antibody
34e4, Orthorhombic Crystal Form
pdb|3CFJ|D Chain D, Crystal Structure Of Catalytic Elimination Antibody
34e4, Orthorhombic Crystal Form
pdb|3CFJ|F Chain F, Crystal Structure Of Catalytic Elimination Antibody
34e4, Orthorhombic Crystal Form
pdb|3CFK|H Chain H, Crystal Structure Of Catalytic Elimination Antibody
34e4, Triclinic Crystal Form
pdb|3CFK|B Chain B, Crystal Structure Of Catalytic Elimination Antibody
34e4, Triclinic Crystal Form
pdb|3CFK|D Chain D, Crystal Structure Of Catalytic Elimination Antibody
34e4, Triclinic Crystal Form
pdb|3CFK|F Chain F, Crystal Structure Of Catalytic Elimination Antibody
34e4, Triclinic Crystal Form
pdb|3CFK|I Chain I, Crystal Structure Of Catalytic Elimination Antibody
34e4, Triclinic Crystal Form
pdb|3CFK|K Chain K, Crystal Structure Of Catalytic Elimination Antibody
34e4, Triclinic Crystal Form
pdb|3CFK|N Chain N, Crystal Structure Of Catalytic Elimination Antibody
34e4, Triclinic Crystal Form
pdb|3CFK|P Chain P, Crystal Structure Of Catalytic Elimination Antibody
34e4, Triclinic Crystal Form
Length = 227
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 22 MAPEGGTIKLVCKAKGYP--RPHITWKRE 48
+A GG++KL C A G+ R +TW R+
Sbjct: 11 LAQPGGSLKLSCAASGFDFRRYWMTWVRQ 39
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKD 67
E +D++ + L CK +G P P I W + DG+ + E + + KD
Sbjct: 14 EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFK-DGEPVSTNEKKSHRVQFKD 64
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKD 67
E +D++ + L CK +G P P I W + DG+ + E + + KD
Sbjct: 14 EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFK-DGEPVSTNEKKSHRVQFKD 64
>pdb|1IGA|A Chain A, Model Of Human Iga1 Determined By Solution Scattering
Curve- Fitting And Homology Modelling
pdb|1IGA|B Chain B, Model Of Human Iga1 Determined By Solution Scattering
Curve- Fitting And Homology Modelling
pdb|2ESG|A Chain A, Solution Structure Of The Complex Between Immunoglobulin
Iga1 And Human Serum Albumin
pdb|2ESG|B Chain B, Solution Structure Of The Complex Between Immunoglobulin
Iga1 And Human Serum Albumin
pdb|2QTJ|A Chain A, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|2QTJ|B Chain B, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|2QTJ|C Chain C, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|2QTJ|D Chain D, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|3CHN|A Chain A, Solution Structure Of Human Secretory Iga1
pdb|3CHN|B Chain B, Solution Structure Of Human Secretory Iga1
pdb|3CHN|D Chain D, Solution Structure Of Human Secretory Iga1
pdb|3CHN|C Chain C, Solution Structure Of Human Secretory Iga1
Length = 475
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 13 LNEESSSDIMAPEGGTIKLVCKAKGY 38
L E+S +++ P G ++K+ CKA GY
Sbjct: 4 LLEQSGAEVKKP-GASVKVSCKASGY 28
>pdb|3IY2|B Chain B, Variable Domains Of The Computer Generated Model (Wam)
Of Fab 6 Fitted Into The Cryoem Reconstruction Of The
Virus- Fab 6 Complex
Length = 111
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 18 SSDIMAPEGGTIKLVCKAKGYPRPH-ITW-KREDGQEI 53
S ++A G ++K+ CKA GY + + W K+ GQ +
Sbjct: 1 SGTVLARPGASVKMSCKASGYTFTYWMHWVKQRPGQGL 38
>pdb|1OAX|H Chain H, Fv Structure Of The Ige Spe-7 In Complex With
Acenaphthenequinone
pdb|1OAX|J Chain J, Fv Structure Of The Ige Spe-7 In Complex With
Acenaphthenequinone
pdb|1OAY|H Chain H, Antibody Multispecificity Mediated By Conformational
Diversity
pdb|1OAY|I Chain I, Antibody Multispecificity Mediated By Conformational
Diversity
pdb|1OAY|J Chain J, Antibody Multispecificity Mediated By Conformational
Diversity
pdb|1OAY|K Chain K, Antibody Multispecificity Mediated By Conformational
Diversity
Length = 122
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S ++++ P G ++KL CKA GY
Sbjct: 5 QQSGAELVKP-GASVKLSCKASGY 27
>pdb|1F4W|H Chain H, Crystal Structure Of An Anti-Carbohydrate Antibody
Directed Against Vibrio Cholerae O1 In Complex With
Antigen
pdb|1F4X|H Chain H, Crystal Structure Of An Anti-Carbohydrate Antibody
Directed Against Vibrio Cholerae O1 In Complex With
Antigen
pdb|1F4Y|H Chain H, Crystal Structure Of An Anti-Carbohydrate Antibody
Directed Against Vibrio Cholerae O1 In Complex With
Antigen
Length = 216
Score = 26.2 bits (56), Expect = 5.7, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
EES ++ P GG+++L C A GY
Sbjct: 5 EESGGGLVTP-GGSLRLSCAASGY 27
>pdb|3V6F|A Chain A, Crystal Structure Of An Anti-hbv E-antigen Monoclonal
Fab Fragment (e6), Unbound
pdb|3V6F|C Chain C, Crystal Structure Of An Anti-hbv E-antigen Monoclonal
Fab Fragment (e6), Unbound
pdb|3V6F|E Chain E, Crystal Structure Of An Anti-hbv E-antigen Monoclonal
Fab Fragment (e6), Unbound
pdb|3V6F|H Chain H, Crystal Structure Of An Anti-hbv E-antigen Monoclonal
Fab Fragment (e6), Unbound
pdb|3V6Z|A Chain A, Crystal Structure Of Hepatitis B Virus E-antigen
pdb|3V6Z|C Chain C, Crystal Structure Of Hepatitis B Virus E-antigen
Length = 224
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRPH--ITWKRE 48
ES D++ P GG++KL C A G+ ++W R+
Sbjct: 6 ESGGDLVKP-GGSLKLSCAASGFTFSSYGMSWVRQ 39
>pdb|1OAR|H Chain H, Fv Ige Spe-7 In Complex With Alizarin Red
pdb|1OAR|I Chain I, Fv Ige Spe-7 In Complex With Alizarin Red
pdb|1OAR|J Chain J, Fv Ige Spe-7 In Complex With Alizarin Red
pdb|1OAR|K Chain K, Fv Ige Spe-7 In Complex With Alizarin Red
pdb|1OAU|I Chain I, Fv Structure Of The Ige Spe-7 In Complex With Dnp-Ser
(Immunising Hapten)
pdb|1OAU|K Chain K, Fv Structure Of The Ige Spe-7 In Complex With Dnp-Ser
(Immunising Hapten)
pdb|1OAZ|H Chain H, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|J Chain J, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAU|H Chain H, Fv Structure Of The Ige Spe-7 In Complex With Dnp-Ser
(Immunising Hapten)
pdb|1OAU|J Chain J, Fv Structure Of The Ige Spe-7 In Complex With Dnp-Ser
(Immunising Hapten)
Length = 122
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S ++++ P G ++KL CKA GY
Sbjct: 5 QQSGAELVKP-GASVKLSCKASGY 27
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 26 GGTIKLVCKAKGYPRPHITW 45
GG ++ VCK +PHI W
Sbjct: 123 GGDVEFVCKVYSDAQPHIQW 142
>pdb|2BJM|H Chain H, Spe7:anthrone Complex
Length = 120
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S ++++ P G ++KL CKA GY
Sbjct: 5 QQSGAELVKP-GASVKLSCKASGY 27
>pdb|1R70|B Chain B, Model Of Human Iga2 Determined By Solution Scattering,
Curve Fitting And Homology Modelling
pdb|1R70|D Chain D, Model Of Human Iga2 Determined By Solution Scattering,
Curve Fitting And Homology Modelling
pdb|3CM9|A Chain A, Solution Structure Of Human Siga2
pdb|3CM9|B Chain B, Solution Structure Of Human Siga2
pdb|3CM9|C Chain C, Solution Structure Of Human Siga2
pdb|3CM9|D Chain D, Solution Structure Of Human Siga2
Length = 462
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 13 LNEESSSDIMAPEGGTIKLVCKAKGY 38
L E+S +++ P G ++K+ CKA GY
Sbjct: 4 LLEQSGAEVKKP-GASVKVSCKASGY 28
>pdb|1OAQ|H Chain H, Free Conformation Ab1 Of The Ige Spe-7
pdb|1OCW|H Chain H, Free Conformation Ab2 Of The Ige Spe-7
Length = 121
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S ++++ P G ++KL CKA GY
Sbjct: 5 QQSGAELVKP-GASVKLSCKASGY 27
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 26 GGTIKLVCKAKGYPRPHITW 45
GG ++ VCK +PHI W
Sbjct: 125 GGDVEFVCKVYSDAQPHIQW 144
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 20 DIMAPEGGTIKLVCKAKGYPRPHITW 45
D EG L C +G P P ITW
Sbjct: 20 DCAVIEGQDFVLQCSVRGTPVPRITW 45
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 26 GGTIKLVCKAKGYPRPHITW 45
GG ++ VCK +PHI W
Sbjct: 125 GGDVEFVCKVYSDAQPHIQW 144
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 26 GGTIKLVCKAKGYPRPHITW 45
GG ++ VCK +PHI W
Sbjct: 124 GGDVEFVCKVYSDAQPHIQW 143
>pdb|1AD9|H Chain H, Igg-Fab Fragment Of Engineered Human Monoclonal Antibody
Ctm01
pdb|1AD9|B Chain B, Igg-Fab Fragment Of Engineered Human Monoclonal Antibody
Ctm01
Length = 219
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRP--HITWKRE 48
+S +++ P G ++K+ CKA GY +I W R+
Sbjct: 6 QSGAEVKKP-GSSVKVSCKASGYTFTDYYINWMRQ 39
>pdb|3GKW|H Chain H, Crystal Structure Of The Fab Fragment Of Nimotuzumab. An
Anti- Epidermal Growth Factor Receptor Antibody
Length = 222
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY--PRPHITWKRE 48
++S +++ P G ++K+ CKA GY +I W R+
Sbjct: 5 QQSGAEVKKP-GSSVKVSCKASGYTFTNYYIYWVRQ 39
>pdb|1EO8|H Chain H, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 217
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRP--HITWKRE 48
++S +++M P G ++K+ CKA GY I W R+
Sbjct: 5 QQSGAELMKP-GPSVKISCKATGYSFSTYFIEWIRQ 39
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 26 GGTIKLVCKAKGYPRPHITW 45
GG ++ VCK +PHI W
Sbjct: 125 GGDVEFVCKVYSDAQPHIQW 144
>pdb|3BGF|L Chain L, X-Ray Crystal Structure Of The Sars Coronavirus Spike
Receptor Binding Domain In Complex With F26g19 Fab
pdb|3BGF|C Chain C, X-Ray Crystal Structure Of The Sars Coronavirus Spike
Receptor Binding Domain In Complex With F26g19 Fab
Length = 212
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DIL +S S + A G + L C+A +++W +E
Sbjct: 1 DILMTQSPSSLSASLGERVSLTCRASQEISGYLSWLQE 38
>pdb|3CMO|H Chain H, Hiv Neutralizing Monoclonal Antibody Yz18
pdb|3CMO|Y Chain Y, Hiv Neutralizing Monoclonal Antibody Yz18
Length = 222
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 18 SSDIMAPEGGTIKLVCKAKGY 38
S ++A G ++K+ CKA GY
Sbjct: 7 SGTVLARPGASVKMSCKASGY 27
>pdb|3O0R|L Chain L, Crystal Structure Of Nitric Oxide Reductase From
Pseudomonas Aeruginosa In Complex With Antibody
Fragment
Length = 213
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE---DGQEIIIKEGNTM 61
DI +S + A G TI + C+A R ++ W +E +++I G+T+
Sbjct: 1 DIQMTQSPPYLAASPGETITINCRASKSIRKYLAWYQEKPGKTNKLLIYSGSTL 54
>pdb|3FMG|H Chain H, Structure Of Rotavirus Outer Capsid Protein Vp7 Trimer
In Co A Neutralizing Fab
Length = 221
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S +++M P G +K+ CKA GY
Sbjct: 5 QQSGAELMKP-GALVKISCKATGY 27
>pdb|1A3L|H Chain H, Catalysis Of A Disfavored Reaction: An Antibody Exo
Diels- Alderase-Tsa-Inhibitor Complex At 1.95 A
Resolution
pdb|1RUQ|H Chain H, Crystal Structure (H) Of U.V.-Irradiated Diels-Alder
Antibody 13g5 Fab At Ph 8.0 With A Data Set Collected
In House.
pdb|1RUR|H Chain H, Crystal Structure (i) Of Native Diels-alder Antibody
13g5 Fab At Ph 8.0 With A Data Set Collected At Ssrl
Beamline 9- 1
Length = 218
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
EES +++ P G ++K+ CKA GY
Sbjct: 5 EESGPELVRP-GTSVKISCKASGY 27
>pdb|1I9R|H Chain H, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
pdb|1I9R|K Chain K, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
pdb|1I9R|X Chain X, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
Length = 219
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+S ++++ P G ++KL CKA GY
Sbjct: 6 QSGAEVVKP-GASVKLSCKASGY 27
>pdb|1YEE|H Chain H, Structure Of A Catalytic Antibody, Igg2a Fab Fragment
(D2.5)
Length = 222
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
+ES ++++ P G ++KL CK GY
Sbjct: 5 QESGAELVRP-GASVKLSCKTSGY 27
>pdb|3HNS|H Chain H, Cs-35 Fab Complex With Oligoarabinofuranosyl
Hexasaccharide
pdb|3HNT|H Chain H, Cs-35 Fab Complex With A Linear, Terminal
Oligoarabinofuranosyl Tetrasaccharide From
Lipoarabinomannan
pdb|3HNV|H Chain H, Cs-35 Fab Complex With Oligoarabinofuranosyl
Tetrasaccharide (Branch Part Of Hexasaccharide)
Length = 220
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+ S ++A G ++K+ CKA GY
Sbjct: 5 QQSGTVLARPGTSVKMSCKASGY 27
>pdb|3BKY|H Chain H, Crystal Structure Of Chimeric Antibody C2h7 Fab In
Complex With A Cd20 Peptide
Length = 226
Score = 25.8 bits (55), Expect = 7.4, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S ++++ P G ++K+ CKA GY
Sbjct: 5 QQSGAELVRP-GASVKMSCKASGY 27
>pdb|2ARJ|L Chain L, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
pdb|2ARJ|A Chain A, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
Length = 211
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITW-KREDGQ 51
DI+ +S S + G + L CKA R +I W +++ GQ
Sbjct: 1 DIVMTQSPSSLAVSAGERVTLNCKASQNVRNNIAWYQQKPGQ 42
>pdb|3QPQ|L Chain L, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|E Chain E, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|C Chain C, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|I Chain I, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3ULU|E Chain E, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|E Chain E, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 215
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DI +S + + A G T+ + C+A G ++ W ++
Sbjct: 1 DIQMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1MFA|H Chain H, Structure Of A Single-Chain Fv Fragment Complexed With A
Carbohydrate Antigen At 1.7 Angstroms Resolution
Length = 120
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+ S ++A G ++K+ CKA GY
Sbjct: 5 QQSGTVVARPGASVKMSCKASGY 27
>pdb|4FFV|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|H Chain H, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|H Chain H, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 217
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRP--HITW-KREDGQEI 53
++S +++ P G ++K+ CKA GY +I W K+ +G+ +
Sbjct: 5 QQSGPELVKP-GASVKISCKASGYSFTDYNINWMKQSNGKSL 45
>pdb|2E27|H Chain H, Crystal Structure Of Fv Fragment Of Anti-Ciguatoxin
Antibody Complexed With Abc-Ring Of Ciguatoxin
Length = 126
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES +++ P G ++KL CKA GY
Sbjct: 8 ESGAELARP-GASVKLSCKASGY 29
>pdb|3NZ8|A Chain A, Crystal Structure Of The Hiv-2 Neutralizing Fab Fragment
7c8
pdb|3NZ8|H Chain H, Crystal Structure Of The Hiv-2 Neutralizing Fab Fragment
7c8
Length = 221
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
EES +++ P G +K+ CKA GY
Sbjct: 5 EESGPELVKP-GALVKISCKASGY 27
>pdb|1FDL|L Chain L, Crystallographic Refinement Of The Three-Dimensional
Structure Of The Fab D1.3-Lysozyme Complex At 2.5-
Angstroms Resolution
Length = 214
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DI +S + + A G T+ + C+A G ++ W ++
Sbjct: 1 DIQMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|3PP3|H Chain H, Epitope Characterization And Crystal Structure Of Ga101
Provide Insights Into The Molecular Basis For The Type
I TYPE II Distinction Of Anti- Cd20 Antibodies
pdb|3PP3|I Chain I, Epitope Characterization And Crystal Structure Of Ga101
Provide Insights Into The Molecular Basis For The Type
I TYPE II Distinction Of Anti- Cd20 Antibodies
pdb|3PP4|H Chain H, Epitope Characterization And Crystal Structure Of Ga101
Provide Insights Into The Molecular Basis For The Type
I TYPE II Distinction Of Anti- Cd20 Antibodies
Length = 224
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRPH--ITWKRE 48
+S +++ P G ++K+ CKA GY + I W R+
Sbjct: 6 QSGAEVKKP-GSSVKVSCKASGYAFSYSWINWVRQ 39
>pdb|1BVK|A Chain A, Humanized Anti-Lysozyme Fv Complexed With Lysozyme
pdb|1BVK|D Chain D, Humanized Anti-Lysozyme Fv Complexed With Lysozyme
pdb|1BVL|B Chain B, Humanized Anti-Lysozyme Fv
pdb|1BVL|D Chain D, Humanized Anti-Lysozyme Fv
Length = 108
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DI +S S + A G + + C+A G ++ W ++
Sbjct: 1 DIQMTQSPSSLSASVGDRVTITCRASGNIHNYLAWYQQ 38
>pdb|2UYL|B Chain B, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
pdb|2UYL|N Chain N, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
pdb|2UYL|W Chain W, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
pdb|2UYL|Y Chain Y, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
Length = 221
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
E+ ++++ P G ++KL CKA GY
Sbjct: 5 EQPGAELVKP-GASVKLSCKASGY 27
>pdb|1BBJ|H Chain H, Crystal Structure Of A Chimeric Fab' Fragment Of An
Antibody Binding Tumour Cells
pdb|1BBJ|B Chain B, Crystal Structure Of A Chimeric Fab' Fragment Of An
Antibody Binding Tumour Cells
Length = 212
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S ++++ P G ++K+ CKA GY
Sbjct: 5 QQSDAELVKP-GASVKISCKASGY 27
>pdb|1JGL|L Chain L, Crystal Structure Of Immunoglobulin Fab Fragment
Complexed With 17-Beta-Estradiol
pdb|1JHK|L Chain L, Crystal Structure Of The Anti-Estradiol Antibody 57-2
Length = 214
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DI +S + + A G T+ + C+A G ++ W ++
Sbjct: 1 DIQMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1CIC|C Chain C, Idiotope-Anti-Idiotope Fab-Fab Complex; D1.3-E225
Length = 214
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DI +S + + A G T+ + C+A G ++ W ++
Sbjct: 1 DIQMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1WEJ|L Chain L, Igg1 Fab Fragment (Of E8 Antibody) Complexed With Horse
Cytochrome C At 1.8 A Resolution
pdb|1QBL|L Chain L, Fab E8 (Fabe8a) X-Ray Structure At 2.26 Angstrom
Resolution
pdb|1QBM|L Chain L, Fab E8b Antibody, X-Ray Structure At 2.37 Angstroms
Resolution
Length = 214
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DI +S + + A G T+ + C+A G ++ W ++
Sbjct: 1 DIQMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|3L5W|L Chain L, Crystal Structure Of The Complex Between Il-13 And C836
Fab
pdb|3L5W|A Chain A, Crystal Structure Of The Complex Between Il-13 And C836
Fab
pdb|3L7E|L Chain L, Crystal Structure Of Anti-Il-13 Antibody C836
pdb|3L7E|A Chain A, Crystal Structure Of Anti-Il-13 Antibody C836
Length = 214
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE---DGQEIIIKEGNTM 61
D+ +S S + A G TI L C+A ++ W +E +++I G+T+
Sbjct: 1 DVQITQSPSYLAASPGETITLNCRASKSISKYLAWYQEKPGKTNKLLIYSGSTL 54
>pdb|1AE6|H Chain H, Igg-Fab Fragment Of Mouse Monoclonal Antibody Ctm01
Length = 218
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRP--HITW-KREDGQ 51
++S +++ P G ++K+ CKA GY +I W K++ GQ
Sbjct: 5 QQSGPELVKP-GASVKISCKASGYTFTDYYINWMKQKPGQ 43
>pdb|2E27|L Chain L, Crystal Structure Of Fv Fragment Of Anti-Ciguatoxin
Antibody Complexed With Abc-Ring Of Ciguatoxin
Length = 119
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 11 DILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE---DGQEIIIKEGNTM 61
DI +S S + A GG + + CKA + I W + G ++I +T+
Sbjct: 3 DIQMTQSPSSLSASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTL 56
>pdb|2C1P|B Chain B, Fab-Fragment Of Enantioselective Antibody Complexed With
Finrozole
pdb|2C1P|H Chain H, Fab-Fragment Of Enantioselective Antibody Complexed With
Finrozole
Length = 217
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRPH--ITWKRE 48
++S ++++ P G ++KL CKA GY + + W R+
Sbjct: 4 QQSGAELVRP-GTSVKLSCKASGYSFTNYWMNWLRQ 38
>pdb|1QNZ|H Chain H, Nmr Structure Of The 0.5b Anti-Hiv Antibody Complex With
The Gp120 V3 Peptide
Length = 119
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRPH--ITWKRED 49
++S ++++ P G ++K+ CKA GY I W +++
Sbjct: 5 QQSGAELVKP-GASVKMSCKASGYTFTTYPIEWMKQN 40
>pdb|2DDQ|H Chain H, Crystal Structure Of The Fab Fragment Of A R310 Antibody
Complexed With (R)-Hne-Histidine Adduct
Length = 213
Score = 25.0 bits (53), Expect = 9.7, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
+ES +++ P G ++K+ CKA GY
Sbjct: 5 QESGPELVKP-GASVKMSCKASGY 27
>pdb|4DGI|H Chain H, Structure Of Pom1 Fab Fragment Complexed With Human Prpc
Fragment 120- 230
Length = 218
Score = 25.0 bits (53), Expect = 9.8, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S ++++ P G ++K+ CKA GY
Sbjct: 5 QQSGTELVMP-GASVKMSCKASGY 27
>pdb|2FD6|H Chain H, Structure Of Human Urokinase Plasminogen Activator In
Complex With Urokinase Receptor And An Anti-Upar
Antibody At 1.9 A
Length = 213
Score = 25.0 bits (53), Expect = 9.8, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRP--HITW-KREDGQ 51
++S +++ P G ++K+ CKA GY +I W K+ GQ
Sbjct: 5 QQSGPEVVKP-GASVKISCKASGYSFTNFYIHWVKQRPGQ 43
>pdb|2C1O|B Chain B, Enaiihis Fab Fragment In The Free Form
pdb|2C1O|H Chain H, Enaiihis Fab Fragment In The Free Form
Length = 218
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRPH--ITWKRE 48
++S ++++ P G ++KL CKA GY + + W R+
Sbjct: 5 QQSGAELVRP-GTSVKLSCKASGYSFTNYWMNWLRQ 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,516,953
Number of Sequences: 62578
Number of extensions: 94802
Number of successful extensions: 992
Number of sequences better than 100.0: 258
Number of HSP's better than 100.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 807
Number of HSP's gapped (non-prelim): 315
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)