Query psy4606
Match_columns 69
No_of_seqs 139 out of 1261
Neff 10.8
Searched_HMMs 46136
Date Fri Aug 16 21:12:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07693 Ig1_Robo First immunog 99.4 4.3E-12 9.2E-17 59.6 6.0 44 9-55 1-44 (100)
2 cd05762 Ig8_MLCK Eighth immuno 99.3 2E-11 4.3E-16 57.9 6.6 45 10-57 1-45 (98)
3 cd05848 Ig1_Contactin-5 First 99.3 2.7E-11 5.8E-16 57.0 6.5 43 10-55 2-47 (94)
4 cd05747 Ig5_Titin_like M5, fif 99.3 3.8E-11 8.3E-16 56.1 6.4 45 8-55 2-46 (92)
5 cd05851 Ig3_Contactin-1 Third 99.3 2E-11 4.4E-16 56.8 4.8 42 9-53 1-42 (88)
6 cd05730 Ig3_NCAM-1_like Third 99.2 1E-10 2.2E-15 54.9 6.5 47 9-56 1-47 (95)
7 cd05850 Ig1_Contactin-2 First 99.2 1.8E-10 3.9E-15 54.1 6.3 42 10-54 2-46 (94)
8 cd05737 Ig_Myomesin_like_C C-t 99.2 2.8E-10 6.1E-15 53.2 6.7 39 18-57 8-46 (92)
9 cd05849 Ig1_Contactin-1 First 99.2 2.3E-10 4.9E-15 53.8 6.2 42 10-54 2-46 (93)
10 cd05773 Ig8_hNephrin_like Eigh 99.2 1.2E-10 2.6E-15 56.1 5.3 49 6-55 1-51 (109)
11 cd05749 Ig2_Tyro3_like Second 99.2 1.2E-10 2.6E-15 53.6 4.6 36 18-54 5-41 (81)
12 PF07679 I-set: Immunoglobulin 99.2 6.4E-10 1.4E-14 51.4 7.1 46 10-58 1-46 (90)
13 cd05745 Ig3_Peroxidasin Third 99.1 2.2E-10 4.8E-15 51.6 4.5 31 25-56 1-31 (74)
14 cd05894 Ig_C5_MyBP-C C5 immuno 99.1 7.2E-10 1.6E-14 51.4 6.2 35 20-55 4-38 (86)
15 cd05722 Ig1_Neogenin First imm 99.1 5.1E-10 1.1E-14 52.5 5.5 37 18-55 6-42 (95)
16 cd05868 Ig4_NrCAM Fourth immun 99.1 4.5E-10 9.8E-15 50.9 4.9 28 26-54 1-28 (76)
17 cd05728 Ig4_Contactin-2-like F 99.1 6.1E-10 1.3E-14 51.4 5.2 37 18-55 6-42 (85)
18 cd04975 Ig4_SCFR_like Fourth i 99.1 8.4E-10 1.8E-14 52.6 5.5 39 18-57 10-49 (101)
19 cd05892 Ig_Myotilin_C C-termin 99.1 4.6E-10 9.9E-15 50.9 4.4 30 29-59 1-30 (75)
20 cd05869 Ig5_NCAM-1 Fifth immun 99.1 1E-09 2.2E-14 51.7 5.6 42 9-53 2-43 (97)
21 cd04968 Ig3_Contactin_like Thi 99.0 1.3E-09 2.9E-14 50.4 5.6 40 10-52 2-41 (88)
22 cd05739 Ig3_RPTP_IIa_LAR_like 99.0 6E-10 1.3E-14 49.7 4.1 28 26-54 1-28 (69)
23 cd05893 Ig_Palladin_C C-termin 99.0 1.1E-09 2.4E-14 49.6 4.4 27 29-56 1-27 (75)
24 cd04972 Ig_TrkABC_d4 Fourth do 99.0 1.6E-09 3.5E-14 50.4 5.1 36 18-54 7-42 (90)
25 cd05852 Ig5_Contactin-1 Fifth 99.0 1.3E-09 2.9E-14 49.1 4.6 30 26-56 1-30 (73)
26 cd05867 Ig4_L1-CAM_like Fourth 99.0 1.6E-09 3.5E-14 49.0 4.9 28 26-54 1-28 (76)
27 cd05870 Ig5_NCAM-2 Fifth immun 99.0 1.5E-09 3.2E-14 51.3 4.8 38 8-48 1-38 (98)
28 KOG3513|consensus 99.0 1.7E-09 3.7E-14 67.1 6.1 52 2-56 324-375 (1051)
29 cd05891 Ig_M-protein_C C-termi 99.0 6E-09 1.3E-13 48.8 6.7 37 18-55 8-44 (92)
30 cd05723 Ig4_Neogenin Fourth im 99.0 2.5E-09 5.3E-14 47.8 5.1 27 28-55 1-27 (71)
31 cd05758 Ig5_KIRREL3-like Fifth 99.0 4.5E-09 9.8E-14 49.6 6.2 43 9-55 2-45 (98)
32 cd05743 Ig_Perlecan_D2_like Im 99.0 3.8E-09 8.3E-14 48.0 5.4 28 26-54 1-28 (78)
33 cd05865 Ig1_NCAM-1 First immun 99.0 7.2E-09 1.6E-13 49.0 6.3 38 18-55 7-45 (96)
34 cd04967 Ig1_Contactin First Ig 98.9 6E-09 1.3E-13 48.6 5.7 41 10-53 2-45 (91)
35 cd05845 Ig2_L1-CAM_like Second 98.9 2.6E-09 5.6E-14 50.5 4.3 51 18-69 10-61 (95)
36 cd05732 Ig5_NCAM-1_like Fifth 98.9 3.5E-09 7.5E-14 49.6 4.7 41 9-53 2-42 (96)
37 cd05744 Ig_Myotilin_C_like Imm 98.9 2.8E-09 6.2E-14 48.2 4.2 27 29-56 1-27 (75)
38 cd05724 Ig2_Robo Second immuno 98.9 4.6E-09 1E-13 48.2 4.9 37 18-55 3-40 (86)
39 KOG4194|consensus 98.9 1.2E-09 2.5E-14 65.2 3.2 52 2-55 605-656 (873)
40 cd05760 Ig2_PTK7 Second immuno 98.9 4.3E-09 9.4E-14 47.7 4.3 27 29-56 1-27 (77)
41 cd05859 Ig4_PDGFR-alpha Fourth 98.9 9.2E-09 2E-13 49.0 5.3 36 20-56 12-47 (101)
42 cd04978 Ig4_L1-NrCAM_like Four 98.9 9.1E-09 2E-13 46.3 4.9 29 26-55 1-29 (76)
43 cd04969 Ig5_Contactin_like Fif 98.9 8.9E-09 1.9E-13 46.2 4.8 29 26-55 1-29 (73)
44 cd05740 Ig_CEACAM_D4 Fourth im 98.9 1E-08 2.3E-13 48.0 5.1 42 10-53 2-43 (91)
45 cd05733 Ig6_L1-CAM_like Sixth 98.9 3.5E-09 7.7E-14 48.0 3.4 25 29-54 1-25 (77)
46 cd05875 Ig6_hNeurofascin_like 98.9 5E-09 1.1E-13 47.6 3.8 24 29-53 1-24 (77)
47 cd05738 Ig2_RPTP_IIa_LAR_like 98.9 8.7E-09 1.9E-13 46.4 4.5 25 29-54 1-25 (74)
48 cd05857 Ig2_FGFR Second immuno 98.9 5.9E-09 1.3E-13 47.8 3.9 34 21-55 4-37 (85)
49 cd05874 Ig6_NrCAM Sixth immuno 98.9 5.2E-09 1.1E-13 47.6 3.5 24 29-53 1-24 (77)
50 cd05863 Ig2_VEGFR-3 Second imm 98.8 9.2E-09 2E-13 45.7 4.1 25 29-54 1-25 (67)
51 cd05748 Ig_Titin_like Immunogl 98.8 1.7E-08 3.6E-13 45.3 4.8 27 28-55 1-27 (74)
52 cd05752 Ig1_FcgammaR_like Frst 98.8 4.9E-08 1.1E-12 44.5 6.1 39 18-57 7-46 (78)
53 cd05866 Ig1_NCAM-2 First immun 98.8 7.9E-08 1.7E-12 45.1 6.9 37 18-55 7-43 (92)
54 cd05735 Ig8_DSCAM Eight immuno 98.8 2.4E-08 5.3E-13 46.4 4.7 30 26-56 1-30 (88)
55 cd05746 Ig4_Peroxidasin Fourth 98.8 1.1E-08 2.4E-13 45.4 3.4 26 29-55 1-26 (69)
56 cd04977 Ig1_NCAM-1_like First 98.8 1.8E-07 3.8E-12 43.8 7.6 37 18-55 7-43 (92)
57 KOG4221|consensus 98.8 2E-08 4.4E-13 63.3 5.4 61 1-65 320-380 (1381)
58 cd07702 Ig2_VEGFR-1 Second imm 98.8 1.8E-08 3.8E-13 45.4 3.7 26 29-55 1-26 (72)
59 cd05856 Ig2_FGFRL1-like Second 98.8 1.9E-08 4E-13 45.7 3.8 32 21-53 4-35 (82)
60 cd05873 Ig_Sema4D_like Immunog 98.7 7.9E-08 1.7E-12 44.8 5.3 42 18-61 3-44 (87)
61 cd05764 Ig_2 Subgroup of the i 98.7 7.9E-08 1.7E-12 43.1 5.1 29 26-54 1-29 (74)
62 cd05771 IgC_Tapasin_R Tapasin- 98.7 1.3E-07 2.7E-12 47.2 6.2 46 2-50 31-78 (139)
63 cd05864 Ig2_VEGFR-2 Second imm 98.7 2.7E-08 5.8E-13 44.6 3.2 26 29-55 1-26 (70)
64 cd05727 Ig2_Contactin-2-like S 98.7 6.3E-08 1.4E-12 45.8 4.1 50 19-69 11-63 (96)
65 cd05882 Ig1_Necl-1 First (N-te 98.7 2.6E-07 5.7E-12 43.6 6.2 33 18-50 4-36 (95)
66 KOG3513|consensus 98.7 1.1E-07 2.5E-12 59.4 6.1 65 2-68 416-481 (1051)
67 cd04976 Ig2_VEGFR Second immun 98.7 4E-08 8.8E-13 43.9 3.1 26 29-55 1-26 (71)
68 PF08205 C2-set_2: CD80-like C 98.6 1.9E-07 4.1E-12 43.2 5.2 27 26-53 14-41 (89)
69 cd04971 Ig_TrKABC_d5 Fifth dom 98.6 1E-07 2.2E-12 43.8 4.0 26 30-56 2-27 (81)
70 cd04973 Ig1_FGFR First immunog 98.6 1.2E-07 2.7E-12 43.1 4.2 35 20-56 3-37 (79)
71 cd05876 Ig3_L1-CAM Third immun 98.6 5E-08 1.1E-12 43.5 2.9 24 29-53 1-24 (71)
72 cd05763 Ig_1 Subgroup of the i 98.6 6.8E-08 1.5E-12 43.4 3.2 22 29-51 1-22 (75)
73 cd07701 Ig1_Necl-3 First (N-te 98.6 2E-07 4.4E-12 43.9 4.8 32 18-49 4-35 (95)
74 cd04974 Ig3_FGFR Third immunog 98.6 7.7E-08 1.7E-12 44.8 3.3 23 26-48 1-23 (90)
75 cd05726 Ig4_Robo Fhird immunog 98.6 1.4E-07 3.1E-12 43.8 4.2 23 26-48 1-23 (90)
76 cd05855 Ig_TrkB_d5 Fifth domai 98.6 9.2E-08 2E-12 43.8 3.4 25 30-55 2-26 (79)
77 cd05734 Ig7_DSCAM Seventh immu 98.6 1.7E-07 3.6E-12 42.6 3.9 22 29-50 1-22 (79)
78 cd05736 Ig2_Follistatin_like S 98.6 1.8E-07 3.8E-12 42.1 3.8 25 29-54 1-25 (76)
79 cd05759 Ig2_KIRREL3-like Secon 98.5 3.3E-07 7.2E-12 41.9 4.3 25 29-54 2-27 (82)
80 KOG4221|consensus 98.5 7.5E-07 1.6E-11 56.6 6.8 39 18-57 244-282 (1381)
81 cd05772 IgC_SIRP Signal-regula 98.5 6.4E-07 1.4E-11 43.4 5.1 31 23-54 18-50 (111)
82 cd05858 Ig3_FGFR-2 Third immun 98.5 2.4E-07 5.2E-12 43.1 3.6 22 26-47 1-22 (90)
83 cd05731 Ig3_L1-CAM_like Third 98.5 2.1E-07 4.6E-12 41.2 3.2 24 29-53 1-24 (71)
84 cd05765 Ig_3 Subgroup of the i 98.5 2.2E-07 4.8E-12 42.1 2.9 23 26-48 1-23 (81)
85 cd04979 Ig_Semaphorin_C Immuno 98.5 1.2E-06 2.6E-11 40.6 5.3 34 18-53 3-36 (89)
86 cd07705 Ig2_Necl-1 Second immu 98.5 4.3E-07 9.4E-12 41.8 3.8 26 29-55 2-28 (83)
87 cd05884 Ig2_Necl-3 Second immu 98.5 4E-07 8.7E-12 42.0 3.6 25 29-54 2-27 (83)
88 cd05729 Ig2_FGFR_like Second i 98.4 1.4E-06 2.9E-11 39.6 5.2 33 21-54 4-36 (85)
89 cd05761 Ig2_Necl-1-4_like Seco 98.4 6.3E-07 1.4E-11 41.1 3.9 25 29-54 2-27 (82)
90 cd05750 Ig_Pro_neuregulin Immu 98.4 2.8E-07 6.2E-12 41.2 2.6 26 29-55 1-27 (75)
91 cd07698 IgC_MHC_I_alpha3 Class 98.4 2.6E-06 5.6E-11 39.9 5.9 25 26-51 14-40 (93)
92 cd05854 Ig6_Contactin-2 Sixth 98.4 7.9E-07 1.7E-11 41.1 3.9 28 27-55 1-30 (85)
93 KOG4222|consensus 98.4 5.3E-07 1.1E-11 56.9 4.1 50 2-53 308-357 (1281)
94 cd00098 IgC Immunoglobulin Con 98.4 9.9E-07 2.2E-11 41.1 4.1 31 24-55 11-43 (95)
95 cd05725 Ig3_Robo Third immunog 98.3 4.2E-07 9.2E-12 40.2 2.3 24 29-53 1-24 (69)
96 cd05898 Ig5_KIRREL3 Fifth immu 98.3 4.7E-06 1E-10 39.6 5.8 44 8-55 1-45 (98)
97 cd04970 Ig6_Contactin_like Six 98.3 2E-06 4.3E-11 39.5 4.3 28 27-55 1-30 (85)
98 cd05717 Ig1_Necl-1-3_like Firs 98.3 3.1E-06 6.7E-11 39.6 4.9 33 18-50 4-36 (95)
99 cd05756 Ig1_IL1R_like First im 98.3 1.6E-06 3.4E-11 40.8 3.8 32 20-52 8-44 (94)
100 PHA02785 IL-beta-binding prote 98.3 5.7E-06 1.2E-10 46.6 6.6 36 18-54 227-265 (326)
101 cd05770 IgC_beta2m Class I maj 98.3 4.3E-06 9.4E-11 39.4 5.2 29 25-54 14-44 (93)
102 PF13895 Ig_2: Immunoglobulin 98.3 7.8E-06 1.7E-10 36.5 5.9 35 21-56 9-43 (80)
103 KOG4222|consensus 98.3 8.5E-07 1.8E-11 56.1 3.1 49 2-53 218-266 (1281)
104 KOG4194|consensus 98.3 1.7E-06 3.6E-11 52.4 4.2 52 2-56 699-751 (873)
105 PHA02826 IL-1 receptor-like pr 98.2 5.4E-06 1.2E-10 44.7 5.5 35 21-56 139-178 (227)
106 cd05885 Ig2_Necl-4 Second immu 98.2 1.5E-06 3.2E-11 39.9 2.8 26 28-54 1-27 (80)
107 cd05767 IgC_MHC_II_alpha Class 98.2 1.1E-05 2.4E-10 38.1 5.6 29 25-54 14-44 (94)
108 cd05766 IgC_MHC_II_beta Class 98.2 6.1E-06 1.3E-10 38.9 4.7 30 25-55 13-44 (94)
109 cd05754 Ig3_Perlecan_like Thir 98.2 6.8E-06 1.5E-10 37.7 4.3 33 18-51 8-41 (85)
110 smart00408 IGc2 Immunoglobulin 98.1 7.7E-06 1.7E-10 34.6 3.9 29 25-54 1-29 (63)
111 smart00407 IGc1 Immunoglobulin 98.1 8.1E-06 1.8E-10 36.8 3.8 24 29-53 2-27 (75)
112 cd05769 IgC_TCR_beta T cell re 98.1 1.1E-05 2.5E-10 39.4 4.4 29 25-54 17-47 (115)
113 cd05883 Ig2_Necl-2 Second immu 98.1 6.5E-06 1.4E-10 38.0 3.2 26 29-55 2-28 (82)
114 cd05853 Ig6_Contactin-4 Sixth 98.1 2E-05 4.2E-10 36.6 4.5 27 28-55 2-30 (85)
115 cd07699 IgC_L Immunoglobulin C 98.1 8.5E-06 1.9E-10 38.8 3.4 29 25-54 16-46 (100)
116 cd05755 Ig2_ICAM-1_like Second 98.0 2E-05 4.3E-10 37.6 4.4 32 22-54 12-46 (100)
117 cd05860 Ig4_SCFR Fourth immuno 98.0 8.7E-05 1.9E-09 35.5 6.5 35 18-53 10-45 (101)
118 cd07690 Ig1_CD4 First immunogl 98.0 4.2E-05 9.2E-10 36.1 5.3 27 21-47 2-28 (94)
119 cd05742 Ig1_VEGFR_like First i 98.0 1.1E-05 2.4E-10 36.9 3.2 23 26-48 1-25 (84)
120 PF07654 C1-set: Immunoglobuli 98.0 2.3E-05 5E-10 35.9 4.0 29 25-54 7-37 (83)
121 cd07697 IgC_TCR_gamma T cell r 97.9 2.2E-05 4.8E-10 37.2 3.2 28 26-54 16-45 (96)
122 cd05861 Ig1_PDGFR-alphabeta Fr 97.9 3.2E-05 6.9E-10 35.6 3.6 23 26-48 1-23 (84)
123 cd05895 Ig_Pro_neuregulin-1 Im 97.9 1.4E-05 3E-10 35.9 2.2 25 29-54 1-26 (76)
124 cd05768 IgC_CH4 CH4 domain (fo 97.8 5.4E-05 1.2E-09 36.2 3.9 29 25-54 15-45 (102)
125 cd05847 IgC_CH2_IgE CH2 domain 97.8 9.6E-05 2.1E-09 34.8 4.6 27 26-53 14-42 (94)
126 cd05753 Ig2_FcgammaR_like Seco 97.7 0.0001 2.2E-09 33.8 4.1 32 22-54 10-42 (83)
127 PF00047 ig: Immunoglobulin do 97.7 7.4E-05 1.6E-09 32.2 3.5 23 26-48 1-24 (64)
128 smart00409 IG Immunoglobulin. 97.7 0.00036 7.8E-09 30.9 5.9 34 20-53 3-36 (86)
129 smart00410 IG_like Immunoglobu 97.7 0.00036 7.8E-09 30.9 5.9 34 20-53 3-36 (86)
130 cd05757 Ig2_IL1R_like Second i 97.7 3.6E-05 7.8E-10 36.1 2.5 34 21-55 5-43 (92)
131 cd04985 IgC_CH1 CH1 domain (fi 97.7 0.0002 4.3E-09 33.8 5.0 27 25-52 15-43 (95)
132 cd07696 IgC_CH3 CH3 domain (th 97.6 0.00022 4.7E-09 33.8 4.3 29 24-52 12-43 (96)
133 cd05871 Ig_Semaphorin_classIII 97.6 0.00013 2.9E-09 34.1 3.5 28 20-48 5-32 (91)
134 cd05872 Ig_Sema4B_like Immunog 97.6 0.00034 7.3E-09 32.5 4.3 37 18-56 3-39 (85)
135 PF13927 Ig_3: Immunoglobulin 97.5 0.00016 3.5E-09 31.6 3.1 18 29-46 18-36 (75)
136 cd05881 Ig1_Necl-2 First (N-te 97.5 0.0013 2.8E-08 31.1 6.1 33 18-50 4-36 (95)
137 cd05719 Ig2_PVR_like Second im 97.5 0.00028 6.1E-09 33.3 3.8 24 24-47 13-37 (95)
138 cd05899 IgV_TCR_beta Immunoglo 97.5 0.00047 1E-08 33.0 4.3 30 18-48 5-34 (110)
139 cd04982 IgV_TCR_gamma Immunogl 97.4 0.00087 1.9E-08 32.3 4.6 31 18-48 5-37 (116)
140 cd07703 Ig2_Nectin-2_like Seco 97.3 0.0007 1.5E-08 32.0 4.0 26 23-48 12-38 (95)
141 cd04983 IgV_TCR_alpha_like Imm 97.3 0.00073 1.6E-08 32.1 4.2 31 18-48 5-35 (109)
142 cd04980 IgV_L_kappa Immunoglob 97.3 0.0011 2.4E-08 31.5 4.5 31 18-48 7-38 (106)
143 cd04986 IgC_CH2 CH2 domain (se 97.2 0.00098 2.1E-08 31.8 3.4 26 25-51 18-46 (99)
144 cd05897 Ig2_IL1R2_like Second 97.0 0.0012 2.7E-08 31.2 3.1 35 21-56 5-44 (95)
145 cd00099 IgV Immunoglobulin var 96.8 0.003 6.6E-08 29.6 3.6 27 22-48 2-29 (105)
146 cd05751 Ig1_LILRB1_like First 96.8 0.0053 1.1E-07 28.5 4.3 30 21-52 11-40 (91)
147 cd05862 Ig1_VEGFR First immuno 96.5 0.0091 2E-07 27.5 3.8 24 26-49 1-26 (86)
148 cd05711 Ig_FcalphaRI Immunoglo 96.4 0.017 3.7E-07 27.0 4.4 35 10-48 2-36 (94)
149 cd07704 Ig2_Nectin-3-4_like Se 96.4 0.0099 2.1E-07 28.3 3.6 28 21-48 11-40 (97)
150 PHA02826 IL-1 receptor-like pr 96.3 0.0097 2.1E-07 32.3 3.7 30 19-48 30-70 (227)
151 cd04984 IgV_L_lambda Immunoglo 96.3 0.0072 1.6E-07 28.3 2.8 27 22-48 2-30 (98)
152 cd07706 IgV_TCR_delta Immunogl 96.1 0.025 5.4E-07 27.3 4.3 31 18-48 6-37 (116)
153 PHA02785 IL-beta-binding prote 96.1 0.0062 1.3E-07 34.6 2.4 27 22-48 37-68 (326)
154 PHA03376 BARF1; Provisional 96.0 0.015 3.2E-07 31.2 3.3 25 26-50 139-163 (221)
155 cd07700 IgV_CD8_beta Immunoglo 96.0 0.022 4.9E-07 27.1 3.7 27 22-48 2-29 (107)
156 cd07694 Ig2_CD4 Second immunog 95.9 0.023 5.1E-07 26.6 3.4 32 22-53 10-43 (88)
157 PHA02865 MHC-like TNF binding 95.8 0.029 6.2E-07 32.4 4.3 21 28-48 216-238 (338)
158 cd07689 Ig2_VCAM-1 Second immu 95.7 0.031 6.8E-07 26.8 3.6 29 23-52 12-43 (99)
159 PF07686 V-set: Immunoglobulin 95.6 0.069 1.5E-06 25.0 4.6 30 18-47 8-38 (114)
160 cd00096 Ig Immunoglobulin doma 95.4 0.025 5.5E-07 23.4 2.6 19 29-47 1-19 (74)
161 cd05720 Ig_CD8_alpha Immunoglo 95.3 0.032 7E-07 26.5 3.0 26 23-48 3-28 (104)
162 cd04981 IgV_H Immunoglobulin ( 95.3 0.075 1.6E-06 25.9 4.2 31 18-48 4-36 (117)
163 cd05714 Ig_CSPGs_LP Immunoglob 95.3 0.044 9.6E-07 25.9 3.3 24 25-48 1-30 (106)
164 cd05715 Ig_P0-like Immunoglobu 95.3 0.066 1.4E-06 25.9 4.0 30 18-47 5-38 (116)
165 PHA02987 Ig domain OX-2-like p 95.2 0.054 1.2E-06 28.8 3.7 29 20-48 24-53 (189)
166 cd05880 Ig_EVA1 Immunoglobulin 95.0 0.1 2.2E-06 25.3 4.2 30 18-47 5-38 (115)
167 cd05900 Ig_Aggrecan Immunoglob 94.8 0.073 1.6E-06 25.9 3.3 24 25-48 1-36 (112)
168 cd05877 Ig_LP_like Immunoglobu 94.7 0.076 1.6E-06 25.1 3.3 24 25-48 1-30 (106)
169 cd07692 Ig_CD3_epsilon Immunog 94.5 0.064 1.4E-06 23.8 2.4 27 24-54 5-31 (65)
170 cd05741 Ig_CEACAM_D1_like Firs 94.5 0.044 9.6E-07 25.1 2.1 23 26-48 1-23 (92)
171 cd05716 Ig_pIgR Immunoglobulin 94.3 0.096 2.1E-06 24.4 3.1 27 22-48 3-30 (98)
172 KOG3515|consensus 94.1 0.071 1.5E-06 33.8 2.9 28 22-49 18-46 (741)
173 cd05896 Ig1_IL1RAPL-1_like Fir 93.9 0.2 4.4E-06 24.2 3.7 30 20-50 9-49 (104)
174 cd05712 Ig_Siglec_N Immunoglob 93.1 0.36 7.8E-06 23.4 4.0 31 18-48 6-42 (119)
175 cd05878 Ig_Aggrecan_like Immun 92.9 0.27 5.9E-06 23.7 3.3 24 25-48 1-34 (110)
176 cd05879 Ig_P0 Immunoglobulin ( 92.2 0.58 1.3E-05 22.9 4.0 30 18-47 5-38 (116)
177 PHA03052 Hypothetical protein; 92.2 0.55 1.2E-05 21.0 5.3 35 18-53 4-41 (69)
178 cd05721 IgV_CTLA-4 Immunoglobu 92.1 0.53 1.1E-05 23.2 3.8 28 21-48 8-38 (115)
179 cd05775 Ig_SLAM-CD84_like_N N- 91.6 0.14 3.1E-06 24.0 1.5 25 24-48 2-27 (97)
180 cd05890 Ig2_Nectin-1_like Seco 91.2 0.32 7E-06 23.3 2.4 25 27-51 21-47 (98)
181 cd05718 Ig1_PVR_like First imm 91.1 0.31 6.8E-06 22.5 2.4 22 27-48 1-25 (98)
182 smart00406 IGv Immunoglobulin 90.5 0.62 1.3E-05 20.3 3.0 21 28-48 1-23 (81)
183 cd05713 Ig_MOG_like Immunoglob 90.4 0.84 1.8E-05 21.2 3.5 23 26-48 1-26 (100)
184 cd05774 Ig_CEACAM_D1 First imm 90.1 0.45 9.8E-06 22.9 2.5 24 22-47 9-34 (105)
185 cd05902 Ig_Neurocan Immunoglob 89.9 0.81 1.8E-05 22.2 3.2 23 26-48 2-31 (110)
186 PHA03269 envelope glycoprotein 89.8 2 4.3E-05 26.5 5.2 44 6-54 326-372 (566)
187 cd05846 Ig1_MRC-OX-2_like Firs 89.3 0.72 1.6E-05 21.5 2.8 23 26-48 1-24 (97)
188 PF06832 BiPBP_C: Penicillin-B 88.8 1.5 3.2E-05 20.2 5.4 24 28-53 31-54 (89)
189 PF06328 Lep_receptor_Ig: Ig-l 84.8 2.9 6.3E-05 19.6 4.5 34 20-54 12-50 (89)
190 KOG3515|consensus 84.6 3.7 8.1E-05 26.6 4.6 46 4-52 92-139 (741)
191 cd05901 Ig_Versican Immunoglob 83.8 3.4 7.3E-05 20.5 3.5 22 26-47 2-34 (117)
192 PHA03273 envelope glycoprotein 80.8 11 0.00023 23.3 5.6 43 7-54 235-280 (486)
193 cd05888 Ig1_Nectin-4_like Frst 80.4 3.1 6.6E-05 19.5 2.6 22 27-48 1-25 (100)
194 cd05889 Ig1_DNAM-1_like First 79.6 2.4 5.3E-05 20.1 2.1 21 28-48 2-23 (96)
195 KOG4597|consensus 78.2 1.3 2.7E-05 27.3 1.0 30 18-47 203-232 (560)
196 PHA03112 IL-18 binding protein 74.1 9.6 0.00021 19.6 3.4 28 22-49 34-63 (141)
197 cd05887 Ig1_Nectin-3_like Firs 73.1 5.2 0.00011 18.9 2.3 22 27-48 1-23 (96)
198 cd07691 Ig_CD3_gamma_delta Imm 69.2 9.1 0.0002 17.3 2.4 22 26-52 6-27 (69)
199 PHA03270 envelope glycoprotein 64.5 31 0.00068 21.3 5.4 42 8-54 220-264 (466)
200 PHA03271 envelope glycoprotein 61.2 37 0.0008 21.0 5.1 32 22-54 256-290 (490)
201 PF07354 Sp38: Zona-pellucida- 61.1 8.9 0.00019 21.9 1.9 18 39-56 11-28 (271)
202 cd05886 Ig1_Nectin-1_like Firs 57.7 20 0.00044 17.0 3.3 21 28-48 2-26 (99)
203 KOG1480|consensus 53.9 3.2 6.9E-05 27.2 -0.5 37 18-55 136-173 (909)
204 KOG1026|consensus 53.8 10 0.00022 24.9 1.5 27 21-47 202-228 (774)
205 KOG3743|consensus 39.1 54 0.0012 21.0 2.9 26 22-47 379-404 (622)
206 COG3908 Uncharacterized protei 34.4 36 0.00078 15.4 1.4 13 30-42 30-42 (77)
207 PF09270 BTD: Beta-trefoil DNA 34.3 34 0.00073 18.1 1.4 26 22-47 69-94 (158)
208 PF10738 Lpp-LpqN: Probable li 32.0 74 0.0016 17.0 2.5 30 36-66 110-141 (175)
209 PF08204 V-set_CD47: CD47 immu 27.5 83 0.0018 16.1 2.1 30 23-53 24-58 (130)
210 PHA02982 hypothetical protein; 26.7 1.3E+02 0.0028 17.0 2.9 35 20-54 33-68 (251)
211 PF15525 DUF4652: Domain of un 26.0 1E+02 0.0023 17.0 2.4 28 42-69 116-143 (200)
212 PHA03402 hypothetical protein; 25.5 85 0.0018 14.4 2.1 18 21-38 11-28 (81)
213 PF02124 Marek_A: Marek's dise 25.0 97 0.0021 17.3 2.2 18 24-41 146-163 (211)
214 PTZ00096 40S ribosomal protein 23.6 1.1E+02 0.0024 16.0 2.2 18 37-55 71-88 (143)
215 PF02440 Adeno_E3_CR1: Adenovi 22.3 92 0.002 13.7 1.9 20 24-47 3-22 (63)
216 PF09866 DUF2093: Uncharacteri 21.9 79 0.0017 12.8 1.4 12 30-41 7-18 (42)
217 PHA02840 hypothetical protein; 20.1 1.2E+02 0.0025 14.1 2.1 18 21-38 10-27 (82)
No 1
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.37 E-value=4.3e-12 Score=59.63 Aligned_cols=44 Identities=39% Similarity=0.843 Sum_probs=37.7
Q ss_pred CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
+|.+... +....+.+|+.+.|.|.+.|.|.|.+.|+| +|..+..
T Consensus 1 ~P~i~~~--p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k-~g~~l~~ 44 (100)
T cd07693 1 PPRIVEH--PSDLIVSKGDPATLNCKAEGRPTPTIQWLK-NGQPLET 44 (100)
T ss_pred CCeEEec--CceeEEcCCCeEEEEeeCCcCCCCEEEEEE-CCEECcc
Confidence 5777776 677888999999999999999999999999 7776643
No 2
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.32 E-value=2e-11 Score=57.85 Aligned_cols=45 Identities=27% Similarity=0.486 Sum_probs=37.9
Q ss_pred CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606 10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57 (69)
Q Consensus 10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~ 57 (69)
|.|... +....+..|+.+.|.|.+.|.|.|.+.|+| +++.+..+.
T Consensus 1 p~~~~~--p~~~~v~~G~~v~l~C~~~G~p~p~v~W~k-dg~~l~~~~ 45 (98)
T cd05762 1 PQIIQF--PEDMKVRAGESVELFCKVTGTQPITCTWMK-FRKQIQEGE 45 (98)
T ss_pred CceEEC--CcCEEEECCCEEEEEEEEcccCCCceEEEE-CCEEecCCC
Confidence 456665 677888999999999999999999999999 888876444
No 3
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.30 E-value=2.7e-11 Score=57.00 Aligned_cols=43 Identities=33% Similarity=0.657 Sum_probs=32.2
Q ss_pred CEEeecCCCceEEe---cCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 10 PDILNEESSSDIMA---PEGGTIKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 10 p~~~~~~~~~~~~~---~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
|.++.. +.++.+ .+|+.+.|.|.+.|.|.|.++|++ ++..+..
T Consensus 2 P~f~~~--p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k-~g~~l~~ 47 (94)
T cd05848 2 PVFVQE--PDDAIFPTDSDEKKVILNCEARGNPVPTYRWLR-NGTEIDT 47 (94)
T ss_pred CeeEEC--CCcEEccCCCCCCEEEEEEEeeecCCCEEEEEE-CCeECcc
Confidence 555555 333333 247899999999999999999999 7777653
No 4
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.28 E-value=3.8e-11 Score=56.14 Aligned_cols=45 Identities=33% Similarity=0.778 Sum_probs=38.2
Q ss_pred cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
.||.+... +....+..|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus 2 ~~~~~~~~--p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k-~g~~l~~ 46 (92)
T cd05747 2 LPATILTK--PRSLTVSEGESARFSCDVDGEPAPTVTWMR-EGQIIVS 46 (92)
T ss_pred CCCccccc--CccEEEeCCCcEEEEEEEeecCCCEEEEEE-CCEECCC
Confidence 47888776 677889999999999999999999999999 6766543
No 5
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.26 E-value=2e-11 Score=56.77 Aligned_cols=42 Identities=33% Similarity=0.559 Sum_probs=35.2
Q ss_pred CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53 (69)
Q Consensus 9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~ 53 (69)
+|.+... +.+..+.+|+.+.|.|.+.|.|.|.++|++ ++..+
T Consensus 1 ~p~i~~~--~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k-~~~~~ 42 (88)
T cd05851 1 PADINVK--FKDTYALKGQNVTLECFALGNPVPVIRWRK-ILEPM 42 (88)
T ss_pred CCceEEc--cccEEEeCCCcEEEEEEecccCCCEEEEEE-CCcCC
Confidence 4667666 667788899999999999999999999999 55544
No 6
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.23 E-value=1e-10 Score=54.91 Aligned_cols=47 Identities=36% Similarity=0.772 Sum_probs=35.7
Q ss_pred CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK 56 (69)
Q Consensus 9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~ 56 (69)
||.+...+......+..|+.+.|.|.+.|.|.|.+.|++ ++..+...
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k-~g~~~~~~ 47 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTK-DGEPIESG 47 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEE-CCEECcCC
Confidence 455544332445678899999999999999999999999 77666543
No 7
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.19 E-value=1.8e-10 Score=54.14 Aligned_cols=42 Identities=31% Similarity=0.629 Sum_probs=31.5
Q ss_pred CEEeecCCCceEEecC---CCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606 10 PDILNEESSSDIMAPE---GGTIKLVCKAKGYPRPHITWKREDGQEII 54 (69)
Q Consensus 10 p~~~~~~~~~~~~~~~---g~~~~l~C~~~g~P~P~~~W~~~~~~~~~ 54 (69)
|.+... +......+ |+.+.|.|.+.|.|.|.++|++ +|..+.
T Consensus 2 P~f~~~--P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~-~g~~l~ 46 (94)
T cd05850 2 PVFEEQ--PSSLLFPEGSPEEKVTLGCRARASPPATYRWKM-NGTEIK 46 (94)
T ss_pred CeeEEC--CCCEEecCCCCCCeEEEEeEceeCCCCEEEEEE-CCEECc
Confidence 455554 44444444 4689999999999999999999 787765
No 8
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.18 E-value=2.8e-10 Score=53.21 Aligned_cols=39 Identities=26% Similarity=0.650 Sum_probs=33.0
Q ss_pred CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~ 57 (69)
+..+.+.+|+.+.|.|.+.|.|.|.+.|++ ++..+....
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k-~g~~l~~~~ 46 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLK-NDQALALSD 46 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEE-CCEECccCC
Confidence 556778899999999999999999999999 777665443
No 9
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.18 E-value=2.3e-10 Score=53.80 Aligned_cols=42 Identities=24% Similarity=0.602 Sum_probs=30.5
Q ss_pred CEEeecCCCceEEec---CCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606 10 PDILNEESSSDIMAP---EGGTIKLVCKAKGYPRPHITWKREDGQEII 54 (69)
Q Consensus 10 p~~~~~~~~~~~~~~---~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~ 54 (69)
|.+... +...... .++.+.|.|.+.|.|.|.++|+| ++..+.
T Consensus 2 P~f~~~--P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k-~~~~i~ 46 (93)
T cd05849 2 PVFEEQ--PIDTIYPEESTEGKVSVNCRARANPFPIYKWRK-NNLDID 46 (93)
T ss_pred CEEEEC--CCCEEecCCccCCeEEEeCcCccCCCCEEEEEE-CCEEcc
Confidence 555555 3333332 24579999999999999999999 676664
No 10
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.17 E-value=1.2e-10 Score=56.13 Aligned_cols=49 Identities=24% Similarity=0.568 Sum_probs=35.7
Q ss_pred EEcCCEEeecCCCceEEe--cCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 6 VVVPPDILNEESSSDIMA--PEGGTIKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 6 V~~~p~~~~~~~~~~~~~--~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
|.++|.+...+....+.. ..|..+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus 1 v~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k-~g~~l~~ 51 (109)
T cd05773 1 VRFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAK-NGVPLDL 51 (109)
T ss_pred CccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEE-CCEECCC
Confidence 456787766532223332 356889999999999999999999 7877653
No 11
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.16 E-value=1.2e-10 Score=53.56 Aligned_cols=36 Identities=28% Similarity=0.601 Sum_probs=31.8
Q ss_pred CceEEecCCCeEEEEeeEeeecCC-eEEEEeCCCcEEE
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEII 54 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P-~~~W~~~~~~~~~ 54 (69)
+.+..+..|+.+.|.|.+.|.|.| .+.|++ +|..+.
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k-~g~~l~ 41 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQ-GGSPLG 41 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCeEEEEEE-CCEECC
Confidence 566788899999999999999999 799999 777664
No 12
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.15 E-value=6.4e-10 Score=51.41 Aligned_cols=46 Identities=26% Similarity=0.676 Sum_probs=39.0
Q ss_pred CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCC
Q psy4606 10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG 58 (69)
Q Consensus 10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~ 58 (69)
|.|... +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..+.+
T Consensus 1 P~~~~~--~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~-~~~~l~~~~~ 46 (90)
T PF07679_consen 1 PVFTKK--PKDVTVKEGESVTLECEVSGNPPPTVTWYK-NGRPLTSSQR 46 (90)
T ss_dssp EEEEEE--SSEEEEETTSEEEEEEEEEESSSSEEEEEE-TTEEEESSSS
T ss_pred CEEEEe--cCCEEEeCCCEEEEEEEEEeCCCCcccccc-cccceeeeee
Confidence 566666 677889999999999999999999999999 7888776443
No 13
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.12 E-value=2.2e-10 Score=51.60 Aligned_cols=31 Identities=39% Similarity=1.070 Sum_probs=26.8
Q ss_pred CCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606 25 EGGTIKLVCKAKGYPRPHITWKREDGQEIIIK 56 (69)
Q Consensus 25 ~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~ 56 (69)
+|+.+.|.|.+.|.|.|.+.|+| ++..+..+
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k-~g~~~~~~ 31 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTK-GGSQLSVD 31 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEE-CCEECCCC
Confidence 58899999999999999999999 77766543
No 14
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.11 E-value=7.2e-10 Score=51.38 Aligned_cols=35 Identities=26% Similarity=0.558 Sum_probs=30.7
Q ss_pred eEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 20 ~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
.+.+..|+.+.|.|.+.|.|.|.+.|++ +++.+..
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k-~~~~i~~ 38 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSR-GDKAFTE 38 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEE-CCEECcc
Confidence 4667889999999999999999999999 7777754
No 15
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.10 E-value=5.1e-10 Score=52.54 Aligned_cols=37 Identities=46% Similarity=0.884 Sum_probs=31.6
Q ss_pred CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
+......+|+.+.|.|.+.|.|.|.+.|+| ++..+..
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k-~g~~l~~ 42 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKK-DGVLLNL 42 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEE-CCeECcc
Confidence 555667789999999999999999999999 7777653
No 16
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.09 E-value=4.5e-10 Score=50.91 Aligned_cols=28 Identities=39% Similarity=0.884 Sum_probs=25.3
Q ss_pred CCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606 26 GGTIKLVCKAKGYPRPHITWKREDGQEII 54 (69)
Q Consensus 26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~ 54 (69)
|+.+.|.|.+.|.|.|.++|++ +|+.+.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k-~g~~i~ 28 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLT-NGVPIE 28 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEE-CCEEcc
Confidence 5789999999999999999999 787764
No 17
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.08 E-value=6.1e-10 Score=51.42 Aligned_cols=37 Identities=38% Similarity=0.716 Sum_probs=32.2
Q ss_pred CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
+.+..+..|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus 6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k-~g~~~~~ 42 (85)
T cd05728 6 ISDTEADIGSSLRWECKASGNPRPAYRWLK-NGQPLAS 42 (85)
T ss_pred CCccEEcCCCcEEEEEEeeEeCCCEEEEEE-CCEECCC
Confidence 666788899999999999999999999999 7776643
No 18
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.07 E-value=8.4e-10 Score=52.63 Aligned_cols=39 Identities=28% Similarity=0.558 Sum_probs=33.3
Q ss_pred CceEEecCCCeEEEEeeEee-ecCCeEEEEeCCCcEEEecC
Q psy4606 18 SSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEIIIKE 57 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~~~~~~~~~~ 57 (69)
...+.+..|+.+.|.|.+.| .|.|.+.|+| ||..+....
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~K-dg~~i~~~~ 49 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTY-DNRTLTNKL 49 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCCCccEEEe-CCeeCCCCc
Confidence 44677889999999999999 9999999999 888876443
No 19
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.07 E-value=4.6e-10 Score=50.90 Aligned_cols=30 Identities=30% Similarity=0.702 Sum_probs=24.4
Q ss_pred EEEEeeEeeecCCeEEEEeCCCcEEEecCCc
Q psy4606 29 IKLVCKAKGYPRPHITWKREDGQEIIIKEGN 59 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~~ 59 (69)
+.|.|.+.|.|.|.+.|+| +++.+....++
T Consensus 1 v~l~C~v~G~P~P~i~W~k-~~~~i~~~~~r 30 (75)
T cd05892 1 VKLECQISAIPPPKIFWKR-NNEMVQYNTDR 30 (75)
T ss_pred CEEEEEEEecCCCeEEEEE-CCEECcCCCCe
Confidence 4799999999999999999 78777644333
No 20
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.06 E-value=1e-09 Score=51.74 Aligned_cols=42 Identities=31% Similarity=0.562 Sum_probs=32.5
Q ss_pred CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53 (69)
Q Consensus 9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~ 53 (69)
.|.+... +.......|+.+.|.|.+.|.|.|.++|++ ++..+
T Consensus 2 ~p~i~~~--~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~-~~~~~ 43 (97)
T cd05869 2 KPKITYV--ENQTAMELEEQITLTCEASGDPIPSITWRT-STRNI 43 (97)
T ss_pred CceEEEc--cCceEEEcCCCEEEEEEeeEeCCCEEEEEE-CCccc
Confidence 5777654 444455568999999999999999999999 55544
No 21
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.05 E-value=1.3e-09 Score=50.45 Aligned_cols=40 Identities=30% Similarity=0.514 Sum_probs=32.2
Q ss_pred CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcE
Q psy4606 10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQE 52 (69)
Q Consensus 10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~ 52 (69)
|.+... +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..
T Consensus 2 ~~~~~~--p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k-~~~~ 41 (88)
T cd04968 2 SIIVVF--PKDTYALKGQNVTLECFALGNPVPQIKWRK-VDGS 41 (88)
T ss_pred CcEEEC--CCceEEeCCCcEEEEEEeeEeCCCEEEEEE-CCCc
Confidence 444444 666778899999999999999999999999 4443
No 22
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.04 E-value=6e-10 Score=49.73 Aligned_cols=28 Identities=39% Similarity=0.972 Sum_probs=24.4
Q ss_pred CCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606 26 GGTIKLVCKAKGYPRPHITWKREDGQEII 54 (69)
Q Consensus 26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~ 54 (69)
|+.+.|.|.+.|.|.|.+.|+| +++.+.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k-~g~~l~ 28 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMK-GGEELT 28 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEE-CCEECC
Confidence 5789999999999999999999 666553
No 23
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.01 E-value=1.1e-09 Score=49.59 Aligned_cols=27 Identities=30% Similarity=0.895 Sum_probs=22.7
Q ss_pred EEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606 29 IKLVCKAKGYPRPHITWKREDGQEIIIK 56 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~~~~~~~~~~ 56 (69)
+.|.|.+.|.|.|.+.|+| ++..+...
T Consensus 1 v~l~C~v~G~P~P~v~W~k-~~~~l~~~ 27 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKK-ENESLTHN 27 (75)
T ss_pred CEEEEEEeEecCCEEEEEE-CCEECCCC
Confidence 4799999999999999999 67666543
No 24
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.01 E-value=1.6e-09 Score=50.39 Aligned_cols=36 Identities=33% Similarity=0.683 Sum_probs=30.3
Q ss_pred CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~ 54 (69)
+....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~-~g~~~~ 42 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWII-AGLIVI 42 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEE-CCEEcc
Confidence 445558899999999999999999999999 666553
No 25
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.01 E-value=1.3e-09 Score=49.08 Aligned_cols=30 Identities=27% Similarity=0.791 Sum_probs=25.4
Q ss_pred CCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606 26 GGTIKLVCKAKGYPRPHITWKREDGQEIIIK 56 (69)
Q Consensus 26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~ 56 (69)
|+.+.|.|.+.|.|.|.+.|+| ++..+...
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k-~~~~l~~~ 30 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSK-GTELLVNN 30 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEe-CCEecccC
Confidence 6789999999999999999999 67665433
No 26
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.01 E-value=1.6e-09 Score=48.97 Aligned_cols=28 Identities=43% Similarity=0.898 Sum_probs=25.0
Q ss_pred CCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606 26 GGTIKLVCKAKGYPRPHITWKREDGQEII 54 (69)
Q Consensus 26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~ 54 (69)
|+.+.|.|.+.|.|.|.++|++ +|..+.
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k-~g~~i~ 28 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSI-NGAPIE 28 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEE-CCEECC
Confidence 6789999999999999999999 787664
No 27
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.00 E-value=1.5e-09 Score=51.29 Aligned_cols=38 Identities=45% Similarity=0.806 Sum_probs=32.6
Q ss_pred cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48 (69)
Q Consensus 8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~ 48 (69)
++|++.. +.+..+.+|+.++|.|.+.|.|.|.+.|++.
T Consensus 1 ~~p~i~~---~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~ 38 (98)
T cd05870 1 VQPHIIQ---LKNETTVENGAATLSCKAEGEPIPEITWKRA 38 (98)
T ss_pred CCCEEEe---eccEEEcCCCcEEEEEecccCCCCeEEEEEC
Confidence 4677764 4567888999999999999999999999984
No 28
>KOG3513|consensus
Probab=99.00 E-value=1.7e-09 Score=67.14 Aligned_cols=52 Identities=33% Similarity=0.668 Sum_probs=46.5
Q ss_pred eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK 56 (69)
Q Consensus 2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~ 56 (69)
++|.|+++|.++.. +.+.....|+++.+.|.|.|.|.|.++|++ +|.++...
T Consensus 324 ~~v~v~a~P~w~~~--~~d~~~~~gs~v~~eC~a~g~P~p~v~Wlk-Ng~pl~~~ 375 (1051)
T KOG3513|consen 324 GHVTVYAPPYWLQK--PQDTEADTGSNVTLECKASGKPNPTVKWLK-NGEPLEPA 375 (1051)
T ss_pred EEEEEecCchhhcc--cceeEecCCCCeEEEEEecCCCCCceEEee-CCeecCcc
Confidence 57889999999886 888888999999999999999999999999 88877643
No 29
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.99 E-value=6e-09 Score=48.79 Aligned_cols=37 Identities=30% Similarity=0.661 Sum_probs=31.5
Q ss_pred CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
+..+.+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k-~~~~~~~ 44 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFK-NDQDIEL 44 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEE-CCEECCC
Confidence 556788899999999999999999999999 6655543
No 30
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.99 E-value=2.5e-09 Score=47.84 Aligned_cols=27 Identities=26% Similarity=0.788 Sum_probs=22.8
Q ss_pred eEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 28 TIKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 28 ~~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
++.|.|.+.|.|.|.++|+| ++..+..
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k-~g~~~~~ 27 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVK-NGDMVIP 27 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEE-CCeECCC
Confidence 47899999999999999999 6666543
No 31
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.99 E-value=4.5e-09 Score=49.62 Aligned_cols=43 Identities=26% Similarity=0.409 Sum_probs=34.0
Q ss_pred CCEEeecCCCceEEecCCCeEEEEeeEeeecCC-eEEEEeCCCcEEEe
Q psy4606 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEIII 55 (69)
Q Consensus 9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P-~~~W~~~~~~~~~~ 55 (69)
||.+.. +....+..|+.+.|.|.+.|.|.| .+.|++ ++..+..
T Consensus 2 pp~i~~---~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~-~~~~i~~ 45 (98)
T cd05758 2 PPIITS---EATQYAILGDKGRVECFIFSTPPPDRIVWTW-KENELES 45 (98)
T ss_pred CCeEcC---CCcEEEeCCCcEEEEEEEcccCCCCEeEEEE-CCEEccC
Confidence 566643 345567889999999999999999 699999 7766654
No 32
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.97 E-value=3.8e-09 Score=47.98 Aligned_cols=28 Identities=32% Similarity=0.744 Sum_probs=24.1
Q ss_pred CCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606 26 GGTIKLVCKAKGYPRPHITWKREDGQEII 54 (69)
Q Consensus 26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~ 54 (69)
|+.+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~-~~~~~~ 28 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRL-NWGHVP 28 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEE-CCeECC
Confidence 6789999999999999999999 655544
No 33
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.96 E-value=7.2e-09 Score=48.98 Aligned_cols=38 Identities=18% Similarity=0.412 Sum_probs=30.4
Q ss_pred CceEEecCCCeEEEEeeEeeecC-CeEEEEeCCCcEEEe
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPR-PHITWKREDGQEIII 55 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~-P~~~W~~~~~~~~~~ 55 (69)
+....+..|+.+.|.|.+.|.|. |.+.|+++++..+..
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~ 45 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP 45 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc
Confidence 44456778999999999999995 799999856665543
No 34
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.95 E-value=6e-09 Score=48.57 Aligned_cols=41 Identities=32% Similarity=0.720 Sum_probs=30.2
Q ss_pred CEEeecCCCceEEe---cCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606 10 PDILNEESSSDIMA---PEGGTIKLVCKAKGYPRPHITWKREDGQEI 53 (69)
Q Consensus 10 p~~~~~~~~~~~~~---~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~ 53 (69)
|.+... +..... ..++.+.|.|.+.|.|.|.++|++ +++.+
T Consensus 2 P~f~~~--p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k-~~~~l 45 (91)
T cd04967 2 PVFEEQ--PDDTIFPEESDEGKVSLNCRARGSPPPTYRWLM-NGTEI 45 (91)
T ss_pred CeeEeC--CCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEE-CCEEC
Confidence 455555 333332 344679999999999999999999 77766
No 35
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.94 E-value=2.6e-09 Score=50.47 Aligned_cols=51 Identities=18% Similarity=0.336 Sum_probs=36.0
Q ss_pred CceEEecCCCeEEEEee-EeeecCCeEEEEeCCCcEEEecCCcEEEeCCCCCC
Q psy4606 18 SSDIMAPEGGTIKLVCK-AKGYPRPHITWKREDGQEIIIKEGNTMVPKSKDIF 69 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~-~~g~P~P~~~W~~~~~~~~~~~~~~~~~~~~~~l~ 69 (69)
.+.+.+.+|..+.|.|. +.|.|.|.+.|++++...+.. .++..+..+|.||
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~-~~Ri~~~~~GnL~ 61 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ-DERVSMGQNGNLY 61 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc-cccEEECCCceEE
Confidence 45678899999999997 689999999999843333443 3344444445543
No 36
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.94 E-value=3.5e-09 Score=49.63 Aligned_cols=41 Identities=37% Similarity=0.631 Sum_probs=32.9
Q ss_pred CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53 (69)
Q Consensus 9 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~ 53 (69)
+|.+.. ..+..+.+|+.+.|.|.+.|.|.|.+.|++ ++..+
T Consensus 2 ~P~i~~---~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~-~~~~~ 42 (96)
T cd05732 2 QPKITY---LENQTAVELEQITLTCEAEGDPIPEITWRR-ATRNF 42 (96)
T ss_pred Ccccee---cCceeEecCCcEEEEEEEeEcCCCcEEEEE-CCccc
Confidence 567653 445677899999999999999999999999 55443
No 37
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.93 E-value=2.8e-09 Score=48.17 Aligned_cols=27 Identities=26% Similarity=0.791 Sum_probs=23.1
Q ss_pred EEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606 29 IKLVCKAKGYPRPHITWKREDGQEIIIK 56 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~~~~~~~~~~ 56 (69)
+.|.|.+.|.|.|.+.|+| ++..+..+
T Consensus 1 v~L~C~v~G~P~P~v~W~k-~~~~i~~~ 27 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKK-NNEMLTYN 27 (75)
T ss_pred CEEEEEEeecCCCeEEEEE-CCEECCCC
Confidence 4799999999999999999 77776543
No 38
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.93 E-value=4.6e-09 Score=48.22 Aligned_cols=37 Identities=32% Similarity=0.755 Sum_probs=31.1
Q ss_pred CceEEecCCCeEEEEeeE-eeecCCeEEEEeCCCcEEEe
Q psy4606 18 SSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~-~g~P~P~~~W~~~~~~~~~~ 55 (69)
+....+.+|+.+.|.|.+ .|.|.|.+.|++ ++..+..
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k-~g~~~~~ 40 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRK-DGQPLNL 40 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEE-CCEECCC
Confidence 456677899999999998 799999999999 7766554
No 39
>KOG4194|consensus
Probab=98.92 E-value=1.2e-09 Score=65.24 Aligned_cols=52 Identities=29% Similarity=0.617 Sum_probs=45.1
Q ss_pred eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
+.|+|...|.+... +.+.....|....|.|.|+|.|.|++.|-|++|..++.
T Consensus 605 ~KltV~~~PsFtkt--P~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPA 656 (873)
T KOG4194|consen 605 AKLTVNQAPSFTKT--PEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPA 656 (873)
T ss_pred eEEEeeccCccccC--cccceeecccceeeeeeccCCCCcceeehhcCCCCCch
Confidence 57899999999887 88899999999999999999999999999955554543
No 40
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.91 E-value=4.3e-09 Score=47.74 Aligned_cols=27 Identities=37% Similarity=0.775 Sum_probs=22.8
Q ss_pred EEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606 29 IKLVCKAKGYPRPHITWKREDGQEIIIK 56 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~~~~~~~~~~ 56 (69)
++|.|.+.|.|.|.+.|+| +|..+...
T Consensus 1 v~L~C~~~g~P~p~v~W~k-~g~~l~~~ 27 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFR-DGTPLSDG 27 (77)
T ss_pred CEEEEEeeecCCCcEEEEE-CCEECCCC
Confidence 4799999999999999999 77776443
No 41
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.89 E-value=9.2e-09 Score=49.02 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=30.8
Q ss_pred eEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606 20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK 56 (69)
Q Consensus 20 ~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~ 56 (69)
...+..+..+.|.|.+.|+|.|.+.|+| ++..+..+
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~k-dg~~l~~~ 47 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLK-DNRTLIEN 47 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEE-CCEECcCC
Confidence 4566778999999999999999999999 88887643
No 42
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.88 E-value=9.1e-09 Score=46.26 Aligned_cols=29 Identities=45% Similarity=0.836 Sum_probs=25.1
Q ss_pred CCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 26 GGTIKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
|+.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~-~g~~~~~ 29 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRL-NGVPIEE 29 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEE-CCEECCC
Confidence 6789999999999999999999 7766643
No 43
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.88 E-value=8.9e-09 Score=46.16 Aligned_cols=29 Identities=31% Similarity=0.793 Sum_probs=25.0
Q ss_pred CCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 26 GGTIKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
|+.+.|.|.+.|.|.|.++|++ ++..+..
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k-~~~~~~~ 29 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSK-GTELLTN 29 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEE-CCEEccc
Confidence 6789999999999999999999 6766543
No 44
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.88 E-value=1e-08 Score=47.95 Aligned_cols=42 Identities=24% Similarity=0.461 Sum_probs=33.6
Q ss_pred CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606 10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53 (69)
Q Consensus 10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~ 53 (69)
|.+...+.+..+.+.+|+.++|.|.+.|. .|.+.|++ ++..+
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~k-ng~~l 43 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVN-NGSLL 43 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEE-CCEEC
Confidence 55544434556788899999999999999 99999999 66654
No 45
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.87 E-value=3.5e-09 Score=48.03 Aligned_cols=25 Identities=40% Similarity=0.917 Sum_probs=21.8
Q ss_pred EEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606 29 IKLVCKAKGYPRPHITWKREDGQEII 54 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~~~~~~~~ 54 (69)
+.|.|.+.|.|.|.++|+| ++..+.
T Consensus 1 i~l~C~~~G~P~P~v~W~k-~g~~l~ 25 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTR-NGTHFD 25 (77)
T ss_pred CEEEeeCcccCCCeEEEEE-CCeECC
Confidence 4789999999999999999 777664
No 46
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.87 E-value=5e-09 Score=47.63 Aligned_cols=24 Identities=42% Similarity=0.924 Sum_probs=21.1
Q ss_pred EEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606 29 IKLVCKAKGYPRPHITWKREDGQEI 53 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~~~~~~~ 53 (69)
+.|.|.+.|.|.|.++|++ ++..+
T Consensus 1 ~~l~C~~~G~P~P~v~W~k-~g~~~ 24 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTR-NGKFF 24 (77)
T ss_pred CEEEEeccccCCCEEEEEE-CCEEc
Confidence 4689999999999999999 77654
No 47
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.86 E-value=8.7e-09 Score=46.39 Aligned_cols=25 Identities=36% Similarity=0.731 Sum_probs=21.5
Q ss_pred EEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606 29 IKLVCKAKGYPRPHITWKREDGQEII 54 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~~~~~~~~ 54 (69)
++|.|.+.|.|.|.+.|++ ++..+.
T Consensus 1 a~l~C~~~G~P~p~v~W~k-~~~~~~ 25 (74)
T cd05738 1 ATMLCAASGNPDPEITWFK-DFLPVD 25 (74)
T ss_pred CEEEEEEeEecCCEEEEEE-CCEECc
Confidence 4789999999999999999 676654
No 48
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.86 E-value=5.9e-09 Score=47.84 Aligned_cols=34 Identities=32% Similarity=0.738 Sum_probs=29.1
Q ss_pred EEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 21 ~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
..+..|..+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k-~g~~l~~ 37 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLK-NGKEFKQ 37 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEE-CCEECCC
Confidence 456789999999999999999999999 7766543
No 49
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.85 E-value=5.2e-09 Score=47.57 Aligned_cols=24 Identities=42% Similarity=1.002 Sum_probs=21.2
Q ss_pred EEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606 29 IKLVCKAKGYPRPHITWKREDGQEI 53 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~~~~~~~ 53 (69)
+.|.|.+.|.|.|+++|++ ++..+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k-~g~~l 24 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTR-NGTHF 24 (77)
T ss_pred CEEEeeCcccCCCeEEEEE-CCeEC
Confidence 4789999999999999999 77665
No 50
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.85 E-value=9.2e-09 Score=45.74 Aligned_cols=25 Identities=40% Similarity=0.832 Sum_probs=22.4
Q ss_pred EEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606 29 IKLVCKAKGYPRPHITWKREDGQEII 54 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~~~~~~~~ 54 (69)
+.|.|.+.|.|.|.+.|+| +|+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~k-dg~~l~ 25 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYK-DGKLIS 25 (67)
T ss_pred CEEEEEEEEeCCCEEEEEE-CCEECc
Confidence 4789999999999999999 888775
No 51
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.83 E-value=1.7e-08 Score=45.31 Aligned_cols=27 Identities=30% Similarity=0.815 Sum_probs=22.9
Q ss_pred eEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 28 TIKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 28 ~~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
.+.|.|.+.|.|.|.+.|++ ++..+..
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k-~g~~l~~ 27 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSK-DGKPLKL 27 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEE-CCEEcCC
Confidence 36899999999999999999 7776643
No 52
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.81 E-value=4.9e-08 Score=44.53 Aligned_cols=39 Identities=15% Similarity=0.337 Sum_probs=31.0
Q ss_pred CceEEecCCCeEEEEeeEeeecCC-eEEEEeCCCcEEEecC
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEIIIKE 57 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P-~~~W~~~~~~~~~~~~ 57 (69)
+....+.+|+.++|.|.+.|.|.+ .+.|++ ++..+....
T Consensus 7 P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~k-ng~~l~~~~ 46 (78)
T cd05752 7 PPWTTIFQGEKVTLTCNGFNSPEQNSTQWYH-NGKLLETTT 46 (78)
T ss_pred CCCeEeeCCCCEEEEEeCCCCCCCccEEEEE-CCEEeeccC
Confidence 555667799999999999998864 699999 787774333
No 53
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.81 E-value=7.9e-08 Score=45.14 Aligned_cols=37 Identities=27% Similarity=0.524 Sum_probs=30.4
Q ss_pred CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
+.+..+..|+.+.|.|.+.|.|. .+.|+++++..+..
T Consensus 7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~ 43 (92)
T cd05866 7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVS 43 (92)
T ss_pred ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecC
Confidence 45567889999999999999998 89999866666543
No 54
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.79 E-value=2.4e-08 Score=46.39 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=25.6
Q ss_pred CCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606 26 GGTIKLVCKAKGYPRPHITWKREDGQEIIIK 56 (69)
Q Consensus 26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~ 56 (69)
|+.+.|.|.+.|.|.|.+.|++ ++..+...
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k-~~~~i~~~ 30 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEK-EDRIINPE 30 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEee-CCEECCCC
Confidence 6789999999999999999999 77666443
No 55
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.78 E-value=1.1e-08 Score=45.45 Aligned_cols=26 Identities=38% Similarity=0.970 Sum_probs=22.1
Q ss_pred EEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 29 IKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
+.|.|.+.|.|.|.+.|+| ++..+..
T Consensus 1 v~L~C~~~g~P~p~i~W~k-~g~~~~~ 26 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNK-DGVQVTE 26 (69)
T ss_pred CEeEecceEeCCCEEEEEE-CCEECCC
Confidence 4799999999999999999 7766543
No 56
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.78 E-value=1.8e-07 Score=43.79 Aligned_cols=37 Identities=22% Similarity=0.500 Sum_probs=29.8
Q ss_pred CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
+....+..|+.+.|.|.+.|.| |.+.|++++++.+..
T Consensus 7 p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~ 43 (92)
T cd04977 7 PSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVT 43 (92)
T ss_pred cCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEecc
Confidence 4456778899999999999997 599999866666544
No 57
>KOG4221|consensus
Probab=98.78 E-value=2e-08 Score=63.27 Aligned_cols=61 Identities=23% Similarity=0.492 Sum_probs=49.5
Q ss_pred CeeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCCcEEEeCC
Q psy4606 1 MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKS 65 (69)
Q Consensus 1 ~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~~~~~~~~ 65 (69)
.|.|+|+++|.+... +..+...++.++.|.|.+.|.|.|.+.|+| +|..+.. ++++.+..+
T Consensus 320 saev~V~a~P~~~~~--p~~l~A~e~~die~ec~~~g~p~p~v~w~k-Ngd~~ip-sdy~ki~~~ 380 (1381)
T KOG4221|consen 320 SAEVTVLAPPGFTKA--PTTLVAHESMDIEFECPVSGKPIPTVRWYK-NGDRIIP-SDYFKIVGG 380 (1381)
T ss_pred ceEEEEEcCCCCCCC--CcceeeeeccceeEeCCCCCCCcceEEEEe-cCcccCc-ccceEecCC
Confidence 378999999999877 777888889999999999999999999999 7766654 444444433
No 58
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.76 E-value=1.8e-08 Score=45.41 Aligned_cols=26 Identities=31% Similarity=0.669 Sum_probs=22.2
Q ss_pred EEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 29 IKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
+.|.|.+.|.|.|.+.|+| ++..+..
T Consensus 1 ~~l~c~v~g~P~P~v~W~k-dg~~l~~ 26 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLK-DGLPAAE 26 (72)
T ss_pred CeEEeeEEEcCCCeEEEEE-CCEECCC
Confidence 3689999999999999999 7777654
No 59
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.76 E-value=1.9e-08 Score=45.67 Aligned_cols=32 Identities=44% Similarity=0.968 Sum_probs=27.2
Q ss_pred EEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606 21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53 (69)
Q Consensus 21 ~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~ 53 (69)
+....|+.+.|.|.+.|.|.|.+.|++ ++..+
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k-~~~~~ 35 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLK-DNKPL 35 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEE-CCcCC
Confidence 445679999999999999999999999 66554
No 60
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.72 E-value=7.9e-08 Score=44.76 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=32.8
Q ss_pred CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCCcEE
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTM 61 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~~~~ 61 (69)
+....+..|+.+.|.|.+.+ |.|.+.|++ +|+.+..+..++.
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~-ng~~i~~~~~r~~ 44 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKF-DGKVLTPESAKYL 44 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEE-CCEECCCCCceEE
Confidence 55677889999999999865 789999999 8888765533333
No 61
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.71 E-value=7.9e-08 Score=43.05 Aligned_cols=29 Identities=45% Similarity=0.832 Sum_probs=24.6
Q ss_pred CCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606 26 GGTIKLVCKAKGYPRPHITWKREDGQEII 54 (69)
Q Consensus 26 g~~~~l~C~~~g~P~P~~~W~~~~~~~~~ 54 (69)
|+.+.|.|.+.|.|.|.+.|++.++..+.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~ 29 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLIS 29 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEec
Confidence 67899999999999999999975666554
No 62
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.71 E-value=1.3e-07 Score=47.21 Aligned_cols=46 Identities=24% Similarity=0.492 Sum_probs=34.8
Q ss_pred eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecC-CeEEEEeCCC
Q psy4606 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPR-PHITWKREDG 50 (69)
Q Consensus 2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~-P~~~W~~~~~ 50 (69)
.+|.|..+|.+... +.......|..+.|.|.+.| +|. +.+.|++ ++
T Consensus 31 ~~l~v~~~P~v~~~--~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~-~g 78 (139)
T cd05771 31 IQLSVSEPPRVRLS--LEKLVSMIEEPQTLICHIAGYYPLDVQVEWTR-EP 78 (139)
T ss_pred EEEEEecCCceEEe--CCCceeecCCcEEEEEEECCCCCCCeEEEEEE-CC
Confidence 36788899988665 43444447889999999999 575 4899999 54
No 63
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.70 E-value=2.7e-08 Score=44.56 Aligned_cols=26 Identities=38% Similarity=0.921 Sum_probs=22.4
Q ss_pred EEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 29 IKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
+.|.|.+.|.|.|.+.|+| +++.+..
T Consensus 1 ~~~~c~v~G~P~P~v~W~k-~g~~l~~ 26 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYK-NGQLIVL 26 (70)
T ss_pred CEEEeEEEEeCCCEEEEEE-CCEECCC
Confidence 3689999999999999999 7877653
No 64
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.67 E-value=6.3e-08 Score=45.84 Aligned_cols=50 Identities=14% Similarity=0.297 Sum_probs=34.4
Q ss_pred ceEEecCCCeEEEEeeE-eeecCCeEEEEeCCCcEE--EecCCcEEEeCCCCCC
Q psy4606 19 SDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEI--IIKEGNTMVPKSKDIF 69 (69)
Q Consensus 19 ~~~~~~~g~~~~l~C~~-~g~P~P~~~W~~~~~~~~--~~~~~~~~~~~~~~l~ 69 (69)
....+.+|..+.|.|.. .|.|.|.+.|++ ++..+ ..+.++.+...+|.||
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k-~~~~~~~~~d~r~~~~~~~G~L~ 63 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLL-NEFPNFIPEDGRRFVSQTNGNLY 63 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEE-CCcccccccCCCeEEeCCCCcEE
Confidence 34567889999999977 579999999999 66543 2233334444456553
No 65
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.66 E-value=2.6e-07 Score=43.60 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=28.8
Q ss_pred CceEEecCCCeEEEEeeEeeecCCeEEEEeCCC
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG 50 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~ 50 (69)
..+..+..|+.+.|.|.+.|.|.|.+.|+++++
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~ 36 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQ 36 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCc
Confidence 456788899999999999999999999998443
No 66
>KOG3513|consensus
Probab=98.66 E-value=1.1e-07 Score=59.43 Aligned_cols=65 Identities=23% Similarity=0.549 Sum_probs=47.9
Q ss_pred eeEEEEc-CCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecCCcEEEeCCCCC
Q psy4606 2 GYLDVVV-PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKDI 68 (69)
Q Consensus 2 ~~l~V~~-~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~~~~~~~~~~~l 68 (69)
|+|.|+. +|.+...+......+..|+.+.+.|.+.|.|+|.+.|.| +++.+. .++++.+..+++|
T Consensus 416 A~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k-~~~~~~-~~~r~~i~edGtL 481 (1051)
T KOG3513|consen 416 AELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLK-GGEKLL-QSGRIRILEDGTL 481 (1051)
T ss_pred eEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEc-CCcccc-cCceEEECCCCcE
Confidence 7899984 477766644455678889999999999999999999999 666433 3445555555543
No 67
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.65 E-value=4e-08 Score=43.93 Aligned_cols=26 Identities=38% Similarity=0.811 Sum_probs=22.4
Q ss_pred EEEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 29 IKLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
+.|.|.+.|.|.|.+.|+| +|+.+..
T Consensus 1 ~~l~c~v~g~P~p~v~W~k-~g~~l~~ 26 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYK-NGKLISE 26 (71)
T ss_pred CEEEeEEEEeCCCEEEEEE-CCEECCC
Confidence 4689999999999999999 7877643
No 68
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.63 E-value=1.9e-07 Score=43.21 Aligned_cols=27 Identities=44% Similarity=1.047 Sum_probs=22.1
Q ss_pred CCeEEEEeeEee-ecCCeEEEEeCCCcEE
Q psy4606 26 GGTIKLVCKAKG-YPRPHITWKREDGQEI 53 (69)
Q Consensus 26 g~~~~l~C~~~g-~P~P~~~W~~~~~~~~ 53 (69)
+..+.+.|.+.| +|.|.++|+. ++..+
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~-~~~~~ 41 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYL-DGGPV 41 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEE-TTCEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEE-CCCce
Confidence 789999998876 9999999999 56555
No 69
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.62 E-value=1e-07 Score=43.77 Aligned_cols=26 Identities=23% Similarity=0.580 Sum_probs=22.4
Q ss_pred EEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606 30 KLVCKAKGYPRPHITWKREDGQEIIIK 56 (69)
Q Consensus 30 ~l~C~~~g~P~P~~~W~~~~~~~~~~~ 56 (69)
.+.|.+.|.|.|.++|+| +|+.+...
T Consensus 2 ~i~~~v~G~P~P~v~W~k-~g~~i~~~ 27 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYH-NGAVLNES 27 (81)
T ss_pred eEEEEeEeeCCCcEEEEE-CCEECcCC
Confidence 478999999999999999 88877544
No 70
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.62 E-value=1.2e-07 Score=43.13 Aligned_cols=35 Identities=23% Similarity=0.486 Sum_probs=28.5
Q ss_pred eEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606 20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK 56 (69)
Q Consensus 20 ~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~ 56 (69)
...+.+|+.+.|.|.+.|. .|.+.|+| +|..+..+
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k-~g~~l~~~ 37 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTK-DGVQLGEN 37 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEee-CCcCCCCC
Confidence 4567789999999999996 67899999 78776543
No 71
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.61 E-value=5e-08 Score=43.54 Aligned_cols=24 Identities=33% Similarity=0.805 Sum_probs=20.2
Q ss_pred EEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606 29 IKLVCKAKGYPRPHITWKREDGQEI 53 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~~~~~~~ 53 (69)
+.|.|.+.|.|.|.+.|++ ++..+
T Consensus 1 ~~L~C~~~G~P~P~v~W~k-~~~~~ 24 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDR-IDGPL 24 (71)
T ss_pred CEEEEEeeEecCCeEEEEE-CCcCC
Confidence 4689999999999999999 55444
No 72
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.61 E-value=6.8e-08 Score=43.44 Aligned_cols=22 Identities=45% Similarity=1.082 Sum_probs=19.1
Q ss_pred EEEEeeEeeecCCeEEEEeCCCc
Q psy4606 29 IKLVCKAKGYPRPHITWKREDGQ 51 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~~~~~ 51 (69)
+.|.|.+.|.|.|.++|+| ++.
T Consensus 1 a~l~C~~~G~P~P~v~W~k-~~~ 22 (75)
T cd05763 1 ARLECAATGHPTPQIAWQK-DGG 22 (75)
T ss_pred CEeEeecccccCCEEEEEe-CCC
Confidence 3689999999999999999 443
No 73
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.60 E-value=2e-07 Score=43.89 Aligned_cols=32 Identities=22% Similarity=0.589 Sum_probs=28.6
Q ss_pred CceEEecCCCeEEEEeeEeeecCCeEEEEeCC
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRED 49 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~ 49 (69)
..++.+.+|+.+.|.|.+.|.|.|.+.|++++
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~ 35 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPA 35 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCC
Confidence 56788999999999999999999999998743
No 74
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.60 E-value=7.7e-08 Score=44.80 Aligned_cols=23 Identities=30% Similarity=0.814 Sum_probs=21.2
Q ss_pred CCeEEEEeeEeeecCCeEEEEeC
Q psy4606 26 GGTIKLVCKAKGYPRPHITWKRE 48 (69)
Q Consensus 26 g~~~~l~C~~~g~P~P~~~W~~~ 48 (69)
|+.++|.|.+.|.|.|.++|+|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~ 23 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKH 23 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEe
Confidence 57899999999999999999983
No 75
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.59 E-value=1.4e-07 Score=43.81 Aligned_cols=23 Identities=43% Similarity=1.041 Sum_probs=21.3
Q ss_pred CCeEEEEeeEeeecCCeEEEEeC
Q psy4606 26 GGTIKLVCKAKGYPRPHITWKRE 48 (69)
Q Consensus 26 g~~~~l~C~~~g~P~P~~~W~~~ 48 (69)
|+.+.|.|.+.|.|.|.+.|+++
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~ 23 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKE 23 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeC
Confidence 67899999999999999999994
No 76
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.59 E-value=9.2e-08 Score=43.80 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=21.8
Q ss_pred EEEeeEeeecCCeEEEEeCCCcEEEe
Q psy4606 30 KLVCKAKGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 30 ~l~C~~~g~P~P~~~W~~~~~~~~~~ 55 (69)
.+.|.+.|+|.|.++|+| +|+.+..
T Consensus 2 ~i~~~v~G~P~Pti~W~k-ng~~l~~ 26 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFH-EGAILNE 26 (79)
T ss_pred eEEEEEeEeCCCceEEEE-CCEECCC
Confidence 478999999999999999 8887753
No 77
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.56 E-value=1.7e-07 Score=42.57 Aligned_cols=22 Identities=50% Similarity=1.179 Sum_probs=19.1
Q ss_pred EEEEeeEeeecCCeEEEEeCCC
Q psy4606 29 IKLVCKAKGYPRPHITWKREDG 50 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~~~~ 50 (69)
++|.|.+.|.|.|.+.|++.++
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~ 22 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKG 22 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCC
Confidence 4799999999999999999433
No 78
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.56 E-value=1.8e-07 Score=42.12 Aligned_cols=25 Identities=40% Similarity=0.939 Sum_probs=21.2
Q ss_pred EEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606 29 IKLVCKAKGYPRPHITWKREDGQEII 54 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~~~~~~~~ 54 (69)
+.|.|.+.|.|.|.+.|+| ++..+.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k-~~~~l~ 25 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLK-NGMDIT 25 (76)
T ss_pred CEeEeEeeecCCCEEEEEE-CCEECC
Confidence 3689999999999999999 666654
No 79
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.52 E-value=3.3e-07 Score=41.85 Aligned_cols=25 Identities=40% Similarity=0.862 Sum_probs=21.5
Q ss_pred EEEEeeEee-ecCCeEEEEeCCCcEEE
Q psy4606 29 IKLVCKAKG-YPRPHITWKREDGQEII 54 (69)
Q Consensus 29 ~~l~C~~~g-~P~P~~~W~~~~~~~~~ 54 (69)
+.|.|.+.| .|.|.++|++ +++.+.
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~-~g~~l~ 27 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFR-DGEVLD 27 (82)
T ss_pred EEEEEEEeCccCCCEEEEEE-CCEEcc
Confidence 579999998 7999999999 787654
No 80
>KOG4221|consensus
Probab=98.51 E-value=7.5e-07 Score=56.63 Aligned_cols=39 Identities=31% Similarity=0.757 Sum_probs=35.2
Q ss_pred CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEecC
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~~ 57 (69)
+....+.+|+.+.|.|.+.|.|+|++.|.+ +|+.+..++
T Consensus 244 p~~~~v~~g~~v~leCvvs~~p~p~v~Wlr-ng~~i~~ds 282 (1381)
T KOG4221|consen 244 PSNAVVVEGDDVVLECVVSGVPKPSVKWLR-NGEKISVDS 282 (1381)
T ss_pred CCccccccCCcEEEEEEecCCCCCceEEee-CCeeeeecc
Confidence 666778899999999999999999999999 899888776
No 81
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.50 E-value=6.4e-07 Score=43.45 Aligned_cols=31 Identities=32% Similarity=0.804 Sum_probs=25.4
Q ss_pred ecCCCeEEEEeeEee-ecC-CeEEEEeCCCcEEE
Q psy4606 23 APEGGTIKLVCKAKG-YPR-PHITWKREDGQEII 54 (69)
Q Consensus 23 ~~~g~~~~l~C~~~g-~P~-P~~~W~~~~~~~~~ 54 (69)
...|+.++|.|.+.| +|. -.++|++ ||+.+.
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~k-ng~~~~ 50 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLK-NGNELS 50 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEE-CCEECc
Confidence 346778999999999 886 5899999 887764
No 82
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.50 E-value=2.4e-07 Score=43.07 Aligned_cols=22 Identities=41% Similarity=0.964 Sum_probs=20.8
Q ss_pred CCeEEEEeeEeeecCCeEEEEe
Q psy4606 26 GGTIKLVCKAKGYPRPHITWKR 47 (69)
Q Consensus 26 g~~~~l~C~~~g~P~P~~~W~~ 47 (69)
|+.+.|.|.+.|.|.|.+.|++
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k 22 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLK 22 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEE
Confidence 6789999999999999999998
No 83
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.49 E-value=2.1e-07 Score=41.16 Aligned_cols=24 Identities=42% Similarity=0.920 Sum_probs=20.2
Q ss_pred EEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606 29 IKLVCKAKGYPRPHITWKREDGQEI 53 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~~~~~~~ 53 (69)
+.|.|.+.|.|.|.+.|++ ++..+
T Consensus 1 v~l~C~~~g~P~p~v~W~k-~~~~~ 24 (71)
T cd05731 1 LLLECIAEGLPTPEISWIK-IGGEL 24 (71)
T ss_pred CEEEEEeeEecCCeEEEEE-CCeEC
Confidence 4789999999999999999 55443
No 84
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.46 E-value=2.2e-07 Score=42.10 Aligned_cols=23 Identities=39% Similarity=0.950 Sum_probs=21.2
Q ss_pred CCeEEEEeeEeeecCCeEEEEeC
Q psy4606 26 GGTIKLVCKAKGYPRPHITWKRE 48 (69)
Q Consensus 26 g~~~~l~C~~~g~P~P~~~W~~~ 48 (69)
|+.+.|.|.+.|.|.|.+.|+|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~ 23 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQ 23 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEec
Confidence 67899999999999999999984
No 85
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.46 E-value=1.2e-06 Score=40.56 Aligned_cols=34 Identities=21% Similarity=0.447 Sum_probs=27.9
Q ss_pred CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~ 53 (69)
+..+.+..|+.+.|.|.+.+ |.|.+.|++ ++..+
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k-~~~~~ 36 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLF-QGGPL 36 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEE-CCccc
Confidence 45567788999999999988 889999999 55444
No 86
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.45 E-value=4.3e-07 Score=41.83 Aligned_cols=26 Identities=35% Similarity=0.718 Sum_probs=21.9
Q ss_pred EEEEeeEee-ecCCeEEEEeCCCcEEEe
Q psy4606 29 IKLVCKAKG-YPRPHITWKREDGQEIII 55 (69)
Q Consensus 29 ~~l~C~~~g-~P~P~~~W~~~~~~~~~~ 55 (69)
+.|.|.+.| +|.+.++|++ +|+.+..
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k-~g~~l~~ 28 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRK-GDQELEG 28 (83)
T ss_pred EEEEEEecCccCCCEeEEEE-CCEECCC
Confidence 679999998 7999999999 7776543
No 87
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.45 E-value=4e-07 Score=41.98 Aligned_cols=25 Identities=36% Similarity=0.830 Sum_probs=21.6
Q ss_pred EEEEeeEee-ecCCeEEEEeCCCcEEE
Q psy4606 29 IKLVCKAKG-YPRPHITWKREDGQEII 54 (69)
Q Consensus 29 ~~l~C~~~g-~P~P~~~W~~~~~~~~~ 54 (69)
+.|.|.+.| +|...++|++ +|+.+.
T Consensus 2 ~~LtC~a~gf~P~~~itW~k-ng~~l~ 27 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFK-NDKEIK 27 (83)
T ss_pred EEEEEEeCCccCCCEEEEEE-CCEECc
Confidence 679999998 9999999999 777754
No 88
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.44 E-value=1.4e-06 Score=39.62 Aligned_cols=33 Identities=45% Similarity=0.940 Sum_probs=27.7
Q ss_pred EEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606 21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54 (69)
Q Consensus 21 ~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~ 54 (69)
..+..|..+.|.|.+.|.|.|.+.|++ ++..+.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k-~~~~~~ 36 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLK-DGKPFK 36 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEE-CCEECc
Confidence 456679999999999999999999999 665543
No 89
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.42 E-value=6.3e-07 Score=41.10 Aligned_cols=25 Identities=28% Similarity=0.747 Sum_probs=21.4
Q ss_pred EEEEeeEee-ecCCeEEEEeCCCcEEE
Q psy4606 29 IKLVCKAKG-YPRPHITWKREDGQEII 54 (69)
Q Consensus 29 ~~l~C~~~g-~P~P~~~W~~~~~~~~~ 54 (69)
+.|.|.+.| +|.+.++|++ +++.+.
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~-~~~~l~ 27 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFK-GDKELK 27 (82)
T ss_pred EEEEEEecCcCcCCeEEEEE-CCEEcc
Confidence 689999987 7999999999 777764
No 90
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.42 E-value=2.8e-07 Score=41.17 Aligned_cols=26 Identities=35% Similarity=0.784 Sum_probs=22.1
Q ss_pred EEEEeeEee-ecCCeEEEEeCCCcEEEe
Q psy4606 29 IKLVCKAKG-YPRPHITWKREDGQEIII 55 (69)
Q Consensus 29 ~~l~C~~~g-~P~P~~~W~~~~~~~~~~ 55 (69)
+.|.|.+.| .|.|.+.|++ +++.+..
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k-~g~~l~~ 27 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFK-DGKELNR 27 (75)
T ss_pred CEEEEEccCCCCCceEEEEc-CCeeccc
Confidence 468999999 9999999999 7776654
No 91
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.41 E-value=2.6e-06 Score=39.93 Aligned_cols=25 Identities=52% Similarity=1.205 Sum_probs=21.2
Q ss_pred CCeEEEEeeEee-ecCC-eEEEEeCCCc
Q psy4606 26 GGTIKLVCKAKG-YPRP-HITWKREDGQ 51 (69)
Q Consensus 26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~ 51 (69)
++.+.|.|.+.| +|.+ .++|.+ +++
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~-~g~ 40 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLR-DGE 40 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEE-CCE
Confidence 678999999999 6776 899999 664
No 92
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.40 E-value=7.9e-07 Score=41.05 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=23.0
Q ss_pred CeEEEEeeEeeecCC--eEEEEeCCCcEEEe
Q psy4606 27 GTIKLVCKAKGYPRP--HITWKREDGQEIII 55 (69)
Q Consensus 27 ~~~~l~C~~~g~P~P--~~~W~~~~~~~~~~ 55 (69)
+++.|.|.+.|.|.| .+.|++ +++.+..
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~-~g~~i~~ 30 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSL-DDFPIDL 30 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEE-CCeEccc
Confidence 368999999999988 579999 7877643
No 93
>KOG4222|consensus
Probab=98.40 E-value=5.3e-07 Score=56.95 Aligned_cols=50 Identities=30% Similarity=0.634 Sum_probs=43.6
Q ss_pred eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53 (69)
Q Consensus 2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~ 53 (69)
|.|+|+++|.+... +....+..|..++|.|++.|.|.|.+.|.+.++..+
T Consensus 308 a~ltV~apP~f~kk--p~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~l 357 (1281)
T KOG4222|consen 308 ATLTVQAPPSFGKK--PRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDL 357 (1281)
T ss_pred cceEEecCcccccc--cCccccccCceEEeeeecCCCCCcceEEeccCccee
Confidence 67999999999887 666778889999999999999999999999655554
No 94
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.39 E-value=9.9e-07 Score=41.10 Aligned_cols=31 Identities=35% Similarity=0.848 Sum_probs=25.1
Q ss_pred cCCCeEEEEeeEeee-cC-CeEEEEeCCCcEEEe
Q psy4606 24 PEGGTIKLVCKAKGY-PR-PHITWKREDGQEIII 55 (69)
Q Consensus 24 ~~g~~~~l~C~~~g~-P~-P~~~W~~~~~~~~~~ 55 (69)
..|+.+.|.|.+.|. |. ..++|++ +|..+..
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~-~g~~~~~ 43 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLK-NGKELTS 43 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEE-CCEECCC
Confidence 358899999999995 74 6899999 7777643
No 95
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.35 E-value=4.2e-07 Score=40.19 Aligned_cols=24 Identities=25% Similarity=0.872 Sum_probs=20.0
Q ss_pred EEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606 29 IKLVCKAKGYPRPHITWKREDGQEI 53 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~~~~~~~ 53 (69)
+.|.|.+.|.|.|.+.|++ ++..+
T Consensus 1 v~l~C~~~g~P~p~v~W~k-~~~~~ 24 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRK-EDGEL 24 (69)
T ss_pred CEEEEECccCCCCEEEEEE-CCccC
Confidence 4789999999999999999 44433
No 96
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.34 E-value=4.7e-06 Score=39.62 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=32.4
Q ss_pred cCCEEeecCCCceEEecCCCeEEEEeeEeeecCCe-EEEEeCCCcEEEe
Q psy4606 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQEIII 55 (69)
Q Consensus 8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~-~~W~~~~~~~~~~ 55 (69)
.||.+.. .....+.+|+.+.|.|.+.+.|.|. +.|.. ++..+..
T Consensus 1 gpP~i~~---~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w-~~~~i~~ 45 (98)
T cd05898 1 GPPIISS---EQVQYAVRGERGKVKCFIGSTPPPDRIAWAW-KENVLES 45 (98)
T ss_pred CCCEEec---CceEEEeCCCcEEEEEEEccCCCCcEEEEEE-ccccccC
Confidence 3676643 4556788999999999999999985 57877 4555543
No 97
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.32 E-value=2e-06 Score=39.49 Aligned_cols=28 Identities=32% Similarity=0.538 Sum_probs=23.0
Q ss_pred CeEEEEeeEeeecCC--eEEEEeCCCcEEEe
Q psy4606 27 GTIKLVCKAKGYPRP--HITWKREDGQEIII 55 (69)
Q Consensus 27 ~~~~l~C~~~g~P~P--~~~W~~~~~~~~~~ 55 (69)
+.+.|.|.+.|.|.| .+.|++ +|..+..
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~-~g~~i~~ 30 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSF-NGVPIDF 30 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEE-CCeEeec
Confidence 368999999999998 568999 7877653
No 98
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.31 E-value=3.1e-06 Score=39.61 Aligned_cols=33 Identities=27% Similarity=0.632 Sum_probs=28.4
Q ss_pred CceEEecCCCeEEEEeeEeeecCCeEEEEeCCC
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG 50 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~ 50 (69)
...+.+.+|+.+.|.|.+.+.|.|.+.|+++++
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~ 36 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQ 36 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCC
Confidence 556788899999999999999999999987444
No 99
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.31 E-value=1.6e-06 Score=40.82 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=26.9
Q ss_pred eEEecCCCeEEEEeeEee-----ecCCeEEEEeCCCcE
Q psy4606 20 DIMAPEGGTIKLVCKAKG-----YPRPHITWKREDGQE 52 (69)
Q Consensus 20 ~~~~~~g~~~~l~C~~~g-----~P~P~~~W~~~~~~~ 52 (69)
...+.+|+.+.|.|.+.| .|.|.+.|+| ++..
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk-~~~~ 44 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYK-SDGK 44 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEE-cCCC
Confidence 455678999999999999 6999999999 5544
No 100
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.30 E-value=5.7e-06 Score=46.61 Aligned_cols=36 Identities=14% Similarity=0.437 Sum_probs=29.8
Q ss_pred CceEEecCCCeEEEEeeEeeecC---CeEEEEeCCCcEEE
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPR---PHITWKREDGQEII 54 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~---P~~~W~~~~~~~~~ 54 (69)
+....+..|+.+.|.|.|.|.|. |.+.|++ +|..+.
T Consensus 227 p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~k-ng~~i~ 265 (326)
T PHA02785 227 PEGVVTSIGSNLTIACRVSLRPPTTDADVFWIS-NGMYYE 265 (326)
T ss_pred CCcEEecCCCcEEEEEEEECCCCCCCceEEEEE-CCEECC
Confidence 45667778999999999999887 4899999 787664
No 101
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.30 E-value=4.3e-06 Score=39.38 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=23.2
Q ss_pred CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606 25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII 54 (69)
Q Consensus 25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~ 54 (69)
.|...+|.|.|.| +|.. .++|.+ ||+.+.
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~-dg~~~~ 44 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLK-NGVKIP 44 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEE-CCEECC
Confidence 4666799999999 7765 689999 887765
No 102
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.30 E-value=7.8e-06 Score=36.52 Aligned_cols=35 Identities=29% Similarity=0.702 Sum_probs=29.7
Q ss_pred EEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606 21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK 56 (69)
Q Consensus 21 ~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~ 56 (69)
..+..|+.+.|.|.+.|.|.+.+.|++ ++..+...
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~-~~~~~~~~ 43 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYK-NGSPINSS 43 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEE-TTEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeee-eeeeeeee
Confidence 446789999999999999999999999 77777643
No 103
>KOG4222|consensus
Probab=98.28 E-value=8.5e-07 Score=56.08 Aligned_cols=49 Identities=24% Similarity=0.551 Sum_probs=43.1
Q ss_pred eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53 (69)
Q Consensus 2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~ 53 (69)
|.|.|+++|.+... +....+..|..+.+.|.+.|.|.|.+.|.+ ++..+
T Consensus 218 A~lsv~e~P~f~~r--p~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk-~~~~~ 266 (1281)
T KOG4222|consen 218 ARLSVQEKPWFWKR--PKDLAVLVGAAAEFDCRVGGDPQPTVRWKK-DDPSL 266 (1281)
T ss_pred ceeeeccCCccccc--cccceeecccccccccccCCCCCCceeeec-cCCCC
Confidence 78999999999887 778888889999999999999999999998 44444
No 104
>KOG4194|consensus
Probab=98.27 E-value=1.7e-06 Score=52.37 Aligned_cols=52 Identities=29% Similarity=0.547 Sum_probs=42.7
Q ss_pred eeEEEEcCCEEeecCCCceEEecCCCeEEEEeeEeeecC-CeEEEEeCCCcEEEec
Q psy4606 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPR-PHITWKREDGQEIIIK 56 (69)
Q Consensus 2 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~-P~~~W~~~~~~~~~~~ 56 (69)
|.|.|...|.+... ..+..+..|..+.|.|.+.|.|. |.+.|+| +.+++...
T Consensus 699 AtL~V~e~p~f~~P--L~~~~V~~get~vlqC~a~~~~a~pr~~W~k-~d~pil~t 751 (873)
T KOG4194|consen 699 ATLTVLETPSFSIP--LEDQLVVVGETLVLQCLAEGAPADPRLEWFK-EDKPILIT 751 (873)
T ss_pred eEEEEecCCccccc--ccceEEEecceEEEEEecCCCCCCccccccC-CCCceEEe
Confidence 78999999988765 56677788999999999999887 9999999 55565433
No 105
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.25 E-value=5.4e-06 Score=44.70 Aligned_cols=35 Identities=20% Similarity=0.440 Sum_probs=28.0
Q ss_pred EEecCCCeEEEEeeEe-----eecCCeEEEEeCCCcEEEec
Q psy4606 21 IMAPEGGTIKLVCKAK-----GYPRPHITWKREDGQEIIIK 56 (69)
Q Consensus 21 ~~~~~g~~~~l~C~~~-----g~P~P~~~W~~~~~~~~~~~ 56 (69)
....+|+.+.|.|.+. |.|.|.++|+| +++.+..+
T Consensus 139 ~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyK-ng~~l~~~ 178 (227)
T PHA02826 139 YQFNSGKDSKLHCYGTDGISSTFKDYTLTWYK-NGNIVLYT 178 (227)
T ss_pred ceEecCCCEEEEeeCCCCccccCCCceEEEEE-CCEECCCC
Confidence 4566899999999986 34689999999 88877543
No 106
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.24 E-value=1.5e-06 Score=39.94 Aligned_cols=26 Identities=27% Similarity=0.653 Sum_probs=22.3
Q ss_pred eEEEEeeEee-ecCCeEEEEeCCCcEEE
Q psy4606 28 TIKLVCKAKG-YPRPHITWKREDGQEII 54 (69)
Q Consensus 28 ~~~l~C~~~g-~P~P~~~W~~~~~~~~~ 54 (69)
.+.|.|.+.| +|.|.++|++ +++.+.
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k-~~~~l~ 27 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYR-DRKELK 27 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEE-CCEECC
Confidence 3689999976 9999999999 788774
No 107
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.22 E-value=1.1e-05 Score=38.06 Aligned_cols=29 Identities=24% Similarity=0.662 Sum_probs=23.0
Q ss_pred CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606 25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII 54 (69)
Q Consensus 25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~ 54 (69)
.+...+|.|.|.| +|.. .++|.+ +|+.+.
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~-~g~~~~ 44 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLK-NGVPVT 44 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEE-CCeEcc
Confidence 3556799999999 8865 689999 787754
No 108
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.22 E-value=6.1e-06 Score=38.88 Aligned_cols=30 Identities=33% Similarity=0.604 Sum_probs=24.8
Q ss_pred CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEEe
Q psy4606 25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEIII 55 (69)
Q Consensus 25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~~ 55 (69)
.+..++|.|.+.| +|.. .++|++ +|+.+..
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~-~g~~~~~ 44 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFK-NGQEETE 44 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEE-CCeecCC
Confidence 5788999999999 8877 789999 7776543
No 109
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.17 E-value=6.8e-06 Score=37.66 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=27.5
Q ss_pred CceEEecCCCeEEEEeeEee-ecCCeEEEEeCCCc
Q psy4606 18 SSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQ 51 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~~~~ 51 (69)
+....+..|+.++|.|.+.+ .|.|.+.|++ ++.
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~-~~~ 41 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTR-VGG 41 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEE-CCC
Confidence 55567788999999999975 8999999999 443
No 110
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.14 E-value=7.7e-06 Score=34.57 Aligned_cols=29 Identities=45% Similarity=0.969 Sum_probs=24.1
Q ss_pred CCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606 25 EGGTIKLVCKAKGYPRPHITWKREDGQEII 54 (69)
Q Consensus 25 ~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~ 54 (69)
+|+.+.|.|.+.+.|.+.+.|++ ++..+.
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~-~~~~~~ 29 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLK-DGKPLP 29 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEE-CCEECC
Confidence 47889999999999999999999 565443
No 111
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.11 E-value=8.1e-06 Score=36.79 Aligned_cols=24 Identities=50% Similarity=1.042 Sum_probs=19.8
Q ss_pred EEEEeeEee-ecC-CeEEEEeCCCcEE
Q psy4606 29 IKLVCKAKG-YPR-PHITWKREDGQEI 53 (69)
Q Consensus 29 ~~l~C~~~g-~P~-P~~~W~~~~~~~~ 53 (69)
++|.|.|.| +|. ..++|++ +|+.+
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k-~g~~~ 27 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLR-NGQEV 27 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEE-CCEEC
Confidence 679999999 677 5899999 77753
No 112
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.09 E-value=1.1e-05 Score=39.35 Aligned_cols=29 Identities=38% Similarity=0.850 Sum_probs=23.8
Q ss_pred CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606 25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII 54 (69)
Q Consensus 25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~ 54 (69)
.++.++|.|.+.| +|.. .++|++ +++.+.
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~k-ng~~l~ 47 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKV-NGKEVT 47 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEE-CCEECC
Confidence 4567999999999 8876 789999 776654
No 113
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.08 E-value=6.5e-06 Score=37.98 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=22.3
Q ss_pred EEEEeeEee-ecCCeEEEEeCCCcEEEe
Q psy4606 29 IKLVCKAKG-YPRPHITWKREDGQEIII 55 (69)
Q Consensus 29 ~~l~C~~~g-~P~P~~~W~~~~~~~~~~ 55 (69)
+.|.|.+.| .|.+.++|++ +++.+..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k-~~~~l~~ 28 (82)
T cd05883 2 IELNCTAMASKPAATIRWFK-GNKELTG 28 (82)
T ss_pred EEEEEEecCCCCCCEEEEEE-CCEECcC
Confidence 689999998 9999999999 7777653
No 114
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.05 E-value=2e-05 Score=36.59 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=22.5
Q ss_pred eEEEEeeEee--ecCCeEEEEeCCCcEEEe
Q psy4606 28 TIKLVCKAKG--YPRPHITWKREDGQEIII 55 (69)
Q Consensus 28 ~~~l~C~~~g--~P~P~~~W~~~~~~~~~~ 55 (69)
.+.|.|.+.+ .+.+.+.|++ +|+.+..
T Consensus 2 ~~~l~C~v~~d~~l~~~~~W~~-dg~~i~~ 30 (85)
T cd05853 2 SIVLPCQVSHDHSLDIVFTWSF-NGHLIDF 30 (85)
T ss_pred cEEEEEEeccCCCCCcEEEEEE-CCEECcc
Confidence 6889999987 5578899999 8888863
No 115
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.05 E-value=8.5e-06 Score=38.75 Aligned_cols=29 Identities=34% Similarity=0.776 Sum_probs=23.5
Q ss_pred CCCeEEEEeeEee-ec-CCeEEEEeCCCcEEE
Q psy4606 25 EGGTIKLVCKAKG-YP-RPHITWKREDGQEII 54 (69)
Q Consensus 25 ~g~~~~l~C~~~g-~P-~P~~~W~~~~~~~~~ 54 (69)
.++.+.|.|.+.| +| .-.+.|++ +|+.+.
T Consensus 16 ~~~~~~L~C~~~gfyP~~i~v~W~~-~g~~~~ 46 (100)
T cd07699 16 KSGKATLVCLINDFYPGFATVQWKV-DGATVS 46 (100)
T ss_pred cCCCcEEEEEEEeEECCCCEEEEEE-CCEECc
Confidence 4677999999999 88 45789999 777653
No 116
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.03 E-value=2e-05 Score=37.63 Aligned_cols=32 Identities=25% Similarity=0.519 Sum_probs=26.5
Q ss_pred EecCCCeEEEEeeEee-ecCCe--EEEEeCCCcEEE
Q psy4606 22 MAPEGGTIKLVCKAKG-YPRPH--ITWKREDGQEII 54 (69)
Q Consensus 22 ~~~~g~~~~l~C~~~g-~P~P~--~~W~~~~~~~~~ 54 (69)
.+.+|..++|.|.+.| .|.+. +.|++ +++.+.
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~r-G~~~l~ 46 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLR-GNETLS 46 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEee-CCEEcc
Confidence 3568999999999988 99997 69999 666653
No 117
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.02 E-value=8.7e-05 Score=35.53 Aligned_cols=35 Identities=20% Similarity=0.579 Sum_probs=29.8
Q ss_pred CceEEecCCCeEEEEeeEeeecCCe-EEEEeCCCcEE
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQEI 53 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P~-~~W~~~~~~~~ 53 (69)
...+.+.+|.++.|.|...++|+|+ +.|.+ ++..+
T Consensus 10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~-~~~~l 45 (101)
T cd05860 10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIY-MNRTL 45 (101)
T ss_pred CceEEEECCCCEEEEEEEEeCCCCeeeEEEc-CCccc
Confidence 4456789999999999999999998 99998 55544
No 118
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.01 E-value=4.2e-05 Score=36.08 Aligned_cols=27 Identities=26% Similarity=0.569 Sum_probs=24.3
Q ss_pred EEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606 21 IMAPEGGTIKLVCKAKGYPRPHITWKR 47 (69)
Q Consensus 21 ~~~~~g~~~~l~C~~~g~P~P~~~W~~ 47 (69)
+.+..|+.++|.|.+.+.|.+.+.|++
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~ 28 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKN 28 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEE
Confidence 356789999999999999999999997
No 119
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.01 E-value=1.1e-05 Score=36.91 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.6
Q ss_pred CCeEEEEeeEeee--cCCeEEEEeC
Q psy4606 26 GGTIKLVCKAKGY--PRPHITWKRE 48 (69)
Q Consensus 26 g~~~~l~C~~~g~--P~P~~~W~~~ 48 (69)
|+.+.|.|.+.|. |.|.+.|.++
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~ 25 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYP 25 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecC
Confidence 6789999999998 8899999873
No 120
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.97 E-value=2.3e-05 Score=35.87 Aligned_cols=29 Identities=38% Similarity=1.024 Sum_probs=24.1
Q ss_pred CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606 25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII 54 (69)
Q Consensus 25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~ 54 (69)
.+..+.|.|.+.| +|.. .+.|++ ++..+.
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~-~~~~~~ 37 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLK-NGKEVT 37 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEE-TTEEET
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEe-ccceee
Confidence 3789999999999 8877 689999 777654
No 121
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.90 E-value=2.2e-05 Score=37.21 Aligned_cols=28 Identities=18% Similarity=0.535 Sum_probs=22.3
Q ss_pred CCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606 26 GGTIKLVCKAKG-YPRP-HITWKREDGQEII 54 (69)
Q Consensus 26 g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~ 54 (69)
+..++|.|.|.| +|.. .++|.+ +|+.+.
T Consensus 16 ~~~~tL~C~a~gFyP~~I~v~W~k-ng~~~~ 45 (96)
T cd07697 16 QGQGIYLCLLENFFPDVIQVHWRE-GNSPSI 45 (96)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEE-CCEECc
Confidence 466899999999 7865 579999 777654
No 122
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=97.88 E-value=3.2e-05 Score=35.56 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=21.0
Q ss_pred CCeEEEEeeEeeecCCeEEEEeC
Q psy4606 26 GGTIKLVCKAKGYPRPHITWKRE 48 (69)
Q Consensus 26 g~~~~l~C~~~g~P~P~~~W~~~ 48 (69)
|+.+.|.|.+.|.|.|.+.|.++
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~ 23 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYP 23 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEEC
Confidence 67899999999999999999973
No 123
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=97.87 E-value=1.4e-05 Score=35.88 Aligned_cols=25 Identities=32% Similarity=0.756 Sum_probs=20.7
Q ss_pred EEEEeeEee-ecCCeEEEEeCCCcEEE
Q psy4606 29 IKLVCKAKG-YPRPHITWKREDGQEII 54 (69)
Q Consensus 29 ~~l~C~~~g-~P~P~~~W~~~~~~~~~ 54 (69)
+.|.|.+.+ .|.|.+.|++ +++.+.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~-~g~~i~ 26 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFK-NGKEIG 26 (76)
T ss_pred CEEEEecccCCCCCceEEEE-CCcccc
Confidence 468999975 7899999999 777764
No 124
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.82 E-value=5.4e-05 Score=36.19 Aligned_cols=29 Identities=31% Similarity=0.621 Sum_probs=23.2
Q ss_pred CCCeEEEEeeEee-ecCC-eEEEEeCCCcEEE
Q psy4606 25 EGGTIKLVCKAKG-YPRP-HITWKREDGQEII 54 (69)
Q Consensus 25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~~~ 54 (69)
.+..++|.|.|.| +|.. .++|++ +|+.+.
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k-~g~~~~ 45 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQ-NGQPLS 45 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEE-CCEECC
Confidence 3578999999999 7766 579999 776653
No 125
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.81 E-value=9.6e-05 Score=34.84 Aligned_cols=27 Identities=37% Similarity=0.687 Sum_probs=22.1
Q ss_pred CCeEEEEeeEee-ecC-CeEEEEeCCCcEE
Q psy4606 26 GGTIKLVCKAKG-YPR-PHITWKREDGQEI 53 (69)
Q Consensus 26 g~~~~l~C~~~g-~P~-P~~~W~~~~~~~~ 53 (69)
...+.|.|.+.| +|. -.++|.+ +|..+
T Consensus 14 ~~~~~L~C~a~gFyP~~I~vtW~~-dg~~~ 42 (94)
T cd05847 14 SETIQLLCLISGYTPGTIEVEWLV-DGQVA 42 (94)
T ss_pred CCCEEEEEEEEeEECCCCEEEEEE-CCEEC
Confidence 456899999999 887 4689999 77765
No 126
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.74 E-value=0.0001 Score=33.82 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=26.0
Q ss_pred EecCCCeEEEEeeEee-ecCCeEEEEeCCCcEEE
Q psy4606 22 MAPEGGTIKLVCKAKG-YPRPHITWKREDGQEII 54 (69)
Q Consensus 22 ~~~~g~~~~l~C~~~g-~P~P~~~W~~~~~~~~~ 54 (69)
.+.+|+.++|.|.+.+ .+.+.+.|+| ++..+.
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k-~g~~~~ 42 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYR-DGKAKK 42 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEE-CCeEcc
Confidence 4678999999999864 7788999999 676553
No 127
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.74 E-value=7.4e-05 Score=32.22 Aligned_cols=23 Identities=30% Similarity=0.884 Sum_probs=20.3
Q ss_pred CCeEEEEeeE-eeecCCeEEEEeC
Q psy4606 26 GGTIKLVCKA-KGYPRPHITWKRE 48 (69)
Q Consensus 26 g~~~~l~C~~-~g~P~P~~~W~~~ 48 (69)
|+.+.|.|.+ .+.|.+.+.|.++
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~ 24 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKN 24 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEET
T ss_pred CCeEEEEeecCCCCCCcEEEEEEC
Confidence 6789999999 6688899999994
No 128
>smart00409 IG Immunoglobulin.
Probab=97.74 E-value=0.00036 Score=30.86 Aligned_cols=34 Identities=29% Similarity=0.806 Sum_probs=27.1
Q ss_pred eEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606 20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53 (69)
Q Consensus 20 ~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~ 53 (69)
...+..|+.+.|.|.+.+.+.+.+.|++.+++.+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v 36 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLL 36 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEc
Confidence 3456789999999999999899999999424444
No 129
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.74 E-value=0.00036 Score=30.86 Aligned_cols=34 Identities=29% Similarity=0.806 Sum_probs=27.1
Q ss_pred eEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606 20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53 (69)
Q Consensus 20 ~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~ 53 (69)
...+..|+.+.|.|.+.+.+.+.+.|++.+++.+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v 36 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLL 36 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEc
Confidence 3456789999999999999899999999424444
No 130
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=97.74 E-value=3.6e-05 Score=36.11 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=27.0
Q ss_pred EEecCCCeEEEEeeEee-e----cCCeEEEEeCCCcEEEe
Q psy4606 21 IMAPEGGTIKLVCKAKG-Y----PRPHITWKREDGQEIII 55 (69)
Q Consensus 21 ~~~~~g~~~~l~C~~~g-~----P~P~~~W~~~~~~~~~~ 55 (69)
..+..|+...|.|...+ . |.|.+.|+| +++.+..
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk-~~~~i~~ 43 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYK-DCKLLEG 43 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeE-CCEECCC
Confidence 45678999999998865 2 678999999 7877654
No 131
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.73 E-value=0.0002 Score=33.84 Aligned_cols=27 Identities=30% Similarity=0.736 Sum_probs=21.8
Q ss_pred CCCeEEEEeeEee-ecCC-eEEEEeCCCcE
Q psy4606 25 EGGTIKLVCKAKG-YPRP-HITWKREDGQE 52 (69)
Q Consensus 25 ~g~~~~l~C~~~g-~P~P-~~~W~~~~~~~ 52 (69)
.++.++|.|.|.| +|.. .++|.+ +|+.
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k-~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNS-GSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeE-CCEE
Confidence 3567999999999 7865 578999 7775
No 132
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.63 E-value=0.00022 Score=33.76 Aligned_cols=29 Identities=28% Similarity=0.623 Sum_probs=21.4
Q ss_pred cCCCeEEEEeeEeee--cCC-eEEEEeCCCcE
Q psy4606 24 PEGGTIKLVCKAKGY--PRP-HITWKREDGQE 52 (69)
Q Consensus 24 ~~g~~~~l~C~~~g~--P~P-~~~W~~~~~~~ 52 (69)
..++.++|.|.+.|. |.. .++|.++++..
T Consensus 12 ~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~ 43 (96)
T cd07696 12 LLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEP 43 (96)
T ss_pred ccCCCeEEEEEEeCCCCCCCcEEEEEECCeEe
Confidence 347889999999998 543 57999933333
No 133
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=97.62 E-value=0.00013 Score=34.07 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=23.6
Q ss_pred eEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606 20 DIMAPEGGTIKLVCKAKGYPRPHITWKRE 48 (69)
Q Consensus 20 ~~~~~~g~~~~l~C~~~g~P~P~~~W~~~ 48 (69)
.+...+|+.+.|.|.. +.|.|.+.|++.
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq 32 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQ 32 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEE
Confidence 3457789999999996 589999999983
No 134
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.55 E-value=0.00034 Score=32.50 Aligned_cols=37 Identities=14% Similarity=0.322 Sum_probs=29.3
Q ss_pred CceEEecCCCeEEEEeeEeeecCCeEEEEeCCCcEEEec
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK 56 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~~~ 56 (69)
...+.+..|+.+.|.|...+. .+.+.|++ ++..+..+
T Consensus 3 ~~~~tv~~g~~v~L~C~~~s~-~A~v~W~~-ng~~l~~~ 39 (85)
T cd05872 3 VKNRTVAPGADVVLPCQLRSN-LASPVWLF-NGTPLNAQ 39 (85)
T ss_pred ceEEEEecCCCEEEECCCCCC-CccEEEEE-CCcccCCC
Confidence 345678899999999998774 66999999 77766543
No 135
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.54 E-value=0.00016 Score=31.65 Aligned_cols=18 Identities=44% Similarity=1.049 Sum_probs=16.8
Q ss_pred EEEEeeEeeec-CCeEEEE
Q psy4606 29 IKLVCKAKGYP-RPHITWK 46 (69)
Q Consensus 29 ~~l~C~~~g~P-~P~~~W~ 46 (69)
+.|.|.+.+.| .+.+.|+
T Consensus 18 ~~l~C~~~~~~~~~~~~W~ 36 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWY 36 (75)
T ss_dssp EEEEEEESSEESSEEEEEE
T ss_pred EEEEEEEccccCCeEEEEE
Confidence 99999999977 8899999
No 136
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=97.51 E-value=0.0013 Score=31.12 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=27.4
Q ss_pred CceEEecCCCeEEEEeeEeeecCCeEEEEeCCC
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG 50 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~ 50 (69)
.+++.+.+|+.+.|.|.+.+.....+.|++.+.
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~ 36 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNR 36 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCccEEEEEecCC
Confidence 456788999999999999998778888987543
No 137
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.51 E-value=0.00028 Score=33.34 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=19.9
Q ss_pred cCCCeEEEEeeEe-eecCCeEEEEe
Q psy4606 24 PEGGTIKLVCKAK-GYPRPHITWKR 47 (69)
Q Consensus 24 ~~g~~~~l~C~~~-g~P~P~~~W~~ 47 (69)
.......+.|.+. |+|.+.|+|++
T Consensus 13 ~~~~~~va~C~s~~gkP~a~ItW~~ 37 (95)
T cd05719 13 GGEPVTVATCVSANGKPPATISWET 37 (95)
T ss_pred CCCccEEEEEECCCCcCCCEEEEEe
Confidence 3455678999995 59999999998
No 138
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.46 E-value=0.00047 Score=33.01 Aligned_cols=30 Identities=17% Similarity=0.489 Sum_probs=26.2
Q ss_pred CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~ 48 (69)
+..+.+.+|+.++|.|...+ +.+.+.|++.
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq 34 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQ 34 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-CCCEEEEEEE
Confidence 55678889999999999988 7889999984
No 139
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.35 E-value=0.00087 Score=32.32 Aligned_cols=31 Identities=26% Similarity=0.615 Sum_probs=26.6
Q ss_pred CceEEecCCCeEEEEeeEee--ecCCeEEEEeC
Q psy4606 18 SSDIMAPEGGTIKLVCKAKG--YPRPHITWKRE 48 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g--~P~P~~~W~~~ 48 (69)
+..+.+.+|+.++|.|...+ .+.+.+.|++.
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq 37 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQ 37 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence 55677889999999999987 78889999984
No 140
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.34 E-value=0.0007 Score=32.04 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=20.8
Q ss_pred ecCCCeEEEEeeEee-ecCCeEEEEeC
Q psy4606 23 APEGGTIKLVCKAKG-YPRPHITWKRE 48 (69)
Q Consensus 23 ~~~g~~~~l~C~~~g-~P~P~~~W~~~ 48 (69)
........+.|.+.| +|.+.++|++.
T Consensus 12 ~~~~~~~va~C~s~~gkPaa~IsW~~~ 38 (95)
T cd07703 12 AGTIPVPVAKCVSANGRPPARISWSST 38 (95)
T ss_pred cCCCccEEEEEEcCCCCCCcEEEEEcC
Confidence 344556899998874 99999999983
No 141
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.34 E-value=0.00073 Score=32.12 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=27.0
Q ss_pred CceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~ 48 (69)
+..+.+.+|+.+.|.|...+.+.+.+.|++.
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~ 35 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQ 35 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCccEEEEEEE
Confidence 5567788999999999999888889999983
No 142
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.29 E-value=0.0011 Score=31.51 Aligned_cols=31 Identities=16% Similarity=0.423 Sum_probs=25.6
Q ss_pred CceEEecCCCeEEEEeeEeeec-CCeEEEEeC
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYP-RPHITWKRE 48 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P-~P~~~W~~~ 48 (69)
+..+.+.+|+.++|.|.+.+.. ...+.|++.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq 38 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSNYLAWYQQ 38 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence 5566788999999999998765 678999973
No 143
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.15 E-value=0.00098 Score=31.83 Aligned_cols=26 Identities=31% Similarity=0.663 Sum_probs=20.9
Q ss_pred CCCeEEEEeeEee-e-cCC-eEEEEeCCCc
Q psy4606 25 EGGTIKLVCKAKG-Y-PRP-HITWKREDGQ 51 (69)
Q Consensus 25 ~g~~~~l~C~~~g-~-P~P-~~~W~~~~~~ 51 (69)
.+..++|.|.+.| + |.. .++|.+ +|.
T Consensus 18 ~~~~atLtClV~~f~~P~~i~V~W~~-~g~ 46 (99)
T cd04986 18 LGSSASLTCTLSGLRDPEGAVFTWTP-SGG 46 (99)
T ss_pred cCCccEEEEEEeccCCCCCeEEEEEE-CCc
Confidence 5778999999999 6 754 688998 554
No 144
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.03 E-value=0.0012 Score=31.20 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=25.7
Q ss_pred EEecCCCeEEEEeeE-ee----ecCCeEEEEeCCCcEEEec
Q psy4606 21 IMAPEGGTIKLVCKA-KG----YPRPHITWKREDGQEIIIK 56 (69)
Q Consensus 21 ~~~~~g~~~~l~C~~-~g----~P~P~~~W~~~~~~~~~~~ 56 (69)
..+..+....|.|.- .+ .+.|.++|+| |++.+..+
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYK-d~~~l~~~ 44 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYK-DSVLLDKD 44 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEcc-CCEECcCC
Confidence 345678899999973 33 3678999999 78776533
No 145
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.83 E-value=0.003 Score=29.65 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=23.0
Q ss_pred EecCCCeEEEEeeEeee-cCCeEEEEeC
Q psy4606 22 MAPEGGTIKLVCKAKGY-PRPHITWKRE 48 (69)
Q Consensus 22 ~~~~g~~~~l~C~~~g~-P~P~~~W~~~ 48 (69)
.+.+|+.++|.|...+. +...+.|++.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~ 29 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQ 29 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEE
Confidence 45689999999999986 7788999983
No 146
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=96.82 E-value=0.0053 Score=28.51 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=24.1
Q ss_pred EEecCCCeEEEEeeEeeecCCeEEEEeCCCcE
Q psy4606 21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQE 52 (69)
Q Consensus 21 ~~~~~g~~~~l~C~~~g~P~P~~~W~~~~~~~ 52 (69)
..+..|++++|.|.+. .+...+.|++ +|..
T Consensus 11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k-~g~~ 40 (91)
T cd05751 11 SVVPLGKPVTLRCQGP-YGAVEYRLYR-EGST 40 (91)
T ss_pred CccCCCCcEEEEEecC-CCCCEEEEEE-CCCC
Confidence 3567899999999875 6788899998 5543
No 147
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=96.50 E-value=0.0091 Score=27.49 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=19.0
Q ss_pred CCeEEEEeeEeeecCC--eEEEEeCC
Q psy4606 26 GGTIKLVCKAKGYPRP--HITWKRED 49 (69)
Q Consensus 26 g~~~~l~C~~~g~P~P--~~~W~~~~ 49 (69)
|+.+.|.|.+.|.|.+ .+.|..++
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~ 26 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPG 26 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCC
Confidence 6789999999986654 67998744
No 148
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=96.39 E-value=0.017 Score=27.04 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=24.7
Q ss_pred CEEeecCCCceEEecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606 10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48 (69)
Q Consensus 10 p~~~~~~~~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~~ 48 (69)
|.+... + ...+..|++++|.|...- +.-.+.|+|+
T Consensus 2 P~l~a~--p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~ 36 (94)
T cd05711 2 PFLSAH--P-SPVVPSGENVTLQCHSDI-RFDRFILYKE 36 (94)
T ss_pred CEEEec--C-CCccCCCCeEEEEEecCC-CCCEEEEEEC
Confidence 444443 2 345678999999998754 5567899994
No 149
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.39 E-value=0.0099 Score=28.33 Aligned_cols=28 Identities=29% Similarity=0.687 Sum_probs=21.9
Q ss_pred EEecCCCeEEE-EeeEe-eecCCeEEEEeC
Q psy4606 21 IMAPEGGTIKL-VCKAK-GYPRPHITWKRE 48 (69)
Q Consensus 21 ~~~~~g~~~~l-~C~~~-g~P~P~~~W~~~ 48 (69)
..+.+|..+.+ .|.+. |+|.+.++|+.+
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~ 40 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETN 40 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCC
Confidence 44566777777 88885 599999999983
No 150
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=96.30 E-value=0.0097 Score=32.34 Aligned_cols=30 Identities=27% Similarity=0.660 Sum_probs=24.6
Q ss_pred ceEEecCCCeEEEEeeEeeecC-----------CeEEEEeC
Q psy4606 19 SDIMAPEGGTIKLVCKAKGYPR-----------PHITWKRE 48 (69)
Q Consensus 19 ~~~~~~~g~~~~l~C~~~g~P~-----------P~~~W~~~ 48 (69)
....+.+|+.+.|.|.+.+.|+ +.+.|+|.
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~ 70 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKT 70 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeC
Confidence 3467789999999999988664 48999994
No 151
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.27 E-value=0.0072 Score=28.29 Aligned_cols=27 Identities=15% Similarity=0.454 Sum_probs=21.9
Q ss_pred EecCCCeEEEEeeEeee--cCCeEEEEeC
Q psy4606 22 MAPEGGTIKLVCKAKGY--PRPHITWKRE 48 (69)
Q Consensus 22 ~~~~g~~~~l~C~~~g~--P~P~~~W~~~ 48 (69)
.+.+|++++|.|...+. ....+.|++.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q 30 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQ 30 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEE
Confidence 45689999999998775 5678999984
No 152
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.10 E-value=0.025 Score=27.28 Aligned_cols=31 Identities=19% Similarity=0.488 Sum_probs=24.6
Q ss_pred CceEEecCCCeEEEEeeEee-ecCCeEEEEeC
Q psy4606 18 SSDIMAPEGGTIKLVCKAKG-YPRPHITWKRE 48 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g-~P~P~~~W~~~ 48 (69)
+..+.+..|..+.|.|.... .....+.|++.
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq 37 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQ 37 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence 55677889999999999875 35567899983
No 153
>PHA02785 IL-beta-binding protein; Provisional
Probab=96.10 E-value=0.0062 Score=34.60 Aligned_cols=27 Identities=30% Similarity=0.614 Sum_probs=23.3
Q ss_pred EecCCCeEEEEeeE-----eeecCCeEEEEeC
Q psy4606 22 MAPEGGTIKLVCKA-----KGYPRPHITWKRE 48 (69)
Q Consensus 22 ~~~~g~~~~l~C~~-----~g~P~P~~~W~~~ 48 (69)
...+|..+.+.|.+ .|.|.|.++|+|.
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~ 68 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKR 68 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEEC
Confidence 35579999999997 6899999999993
No 154
>PHA03376 BARF1; Provisional
Probab=95.96 E-value=0.015 Score=31.17 Aligned_cols=25 Identities=24% Similarity=0.828 Sum_probs=20.7
Q ss_pred CCeEEEEeeEeeecCCeEEEEeCCC
Q psy4606 26 GGTIKLVCKAKGYPRPHITWKREDG 50 (69)
Q Consensus 26 g~~~~l~C~~~g~P~P~~~W~~~~~ 50 (69)
-+...+.|.+.|+|.|.++|..+.|
T Consensus 139 ~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 139 FSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred CCeeEEEEecCCcCCchheeccccC
Confidence 5667899998889999999987444
No 155
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=95.95 E-value=0.022 Score=27.14 Aligned_cols=27 Identities=37% Similarity=0.673 Sum_probs=21.5
Q ss_pred EecCCCeEEEEeeEeee-cCCeEEEEeC
Q psy4606 22 MAPEGGTIKLVCKAKGY-PRPHITWKRE 48 (69)
Q Consensus 22 ~~~~g~~~~l~C~~~g~-P~P~~~W~~~ 48 (69)
.+..|+.++|.|...+. ....+.|++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq 29 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRW 29 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEE
Confidence 46789999999998774 3457999984
No 156
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=95.87 E-value=0.023 Score=26.63 Aligned_cols=32 Identities=13% Similarity=0.335 Sum_probs=24.1
Q ss_pred EecCCCeEEEEeeEee--ecCCeEEEEeCCCcEE
Q psy4606 22 MAPEGGTIKLVCKAKG--YPRPHITWKREDGQEI 53 (69)
Q Consensus 22 ~~~~g~~~~l~C~~~g--~P~P~~~W~~~~~~~~ 53 (69)
....|++++|.|++.. .|.+.+.|..+.++.+
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~ 43 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK 43 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccc
Confidence 4567999999999965 4555999998655433
No 157
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=95.85 E-value=0.029 Score=32.36 Aligned_cols=21 Identities=24% Similarity=0.651 Sum_probs=17.7
Q ss_pred eEEEEeeEee-ecCC-eEEEEeC
Q psy4606 28 TIKLVCKAKG-YPRP-HITWKRE 48 (69)
Q Consensus 28 ~~~l~C~~~g-~P~P-~~~W~~~ 48 (69)
.++|.|.|.| +|.. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 6899999999 8875 5789993
No 158
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=95.75 E-value=0.031 Score=26.77 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=22.7
Q ss_pred ecCCCeEEEEeeEee-ecC--CeEEEEeCCCcE
Q psy4606 23 APEGGTIKLVCKAKG-YPR--PHITWKREDGQE 52 (69)
Q Consensus 23 ~~~g~~~~l~C~~~g-~P~--P~~~W~~~~~~~ 52 (69)
...|..+++.|.+.+ +|. ..+.|++ +...
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~Llk-G~~~ 43 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLK-GETL 43 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEec-Ccce
Confidence 357999999999987 877 6788987 4433
No 159
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=95.57 E-value=0.069 Score=24.99 Aligned_cols=30 Identities=23% Similarity=0.527 Sum_probs=24.7
Q ss_pred CceEEecCCCeEEEEeeEe-eecCCeEEEEe
Q psy4606 18 SSDIMAPEGGTIKLVCKAK-GYPRPHITWKR 47 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~-g~P~P~~~W~~ 47 (69)
+..+.+..|+.+.|.|... ......+.|++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~ 38 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYR 38 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEE
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEE
Confidence 4556788999999999998 45667899998
No 160
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=95.41 E-value=0.025 Score=23.37 Aligned_cols=19 Identities=47% Similarity=1.015 Sum_probs=16.5
Q ss_pred EEEEeeEeeecCCeEEEEe
Q psy4606 29 IKLVCKAKGYPRPHITWKR 47 (69)
Q Consensus 29 ~~l~C~~~g~P~P~~~W~~ 47 (69)
+.|.|.+.+.+.+.+.|++
T Consensus 1 ~~l~C~~~~~~~~~~~W~~ 19 (74)
T cd00096 1 VTLTCLASGPPPPTITWLK 19 (74)
T ss_pred CEEEEEecCCCCCcEEEEE
Confidence 3689999998888999998
No 161
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=95.35 E-value=0.032 Score=26.54 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=20.7
Q ss_pred ecCCCeEEEEeeEeeecCCeEEEEeC
Q psy4606 23 APEGGTIKLVCKAKGYPRPHITWKRE 48 (69)
Q Consensus 23 ~~~g~~~~l~C~~~g~P~P~~~W~~~ 48 (69)
+..|+.++|.|.....-...+.|++.
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq 28 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQ 28 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEe
Confidence 56799999999886654567899984
No 162
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=95.30 E-value=0.075 Score=25.87 Aligned_cols=31 Identities=32% Similarity=0.668 Sum_probs=23.8
Q ss_pred CceEEecCCCeEEEEeeEeeec--CCeEEEEeC
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYP--RPHITWKRE 48 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P--~P~~~W~~~ 48 (69)
+....+..|+.++|.|...+.- ...+.|++.
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ 36 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQ 36 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEE
Confidence 4556788999999999876533 466899984
No 163
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=95.27 E-value=0.044 Score=25.92 Aligned_cols=24 Identities=33% Similarity=0.761 Sum_probs=19.4
Q ss_pred CCCeEEEEeeEeeec------CCeEEEEeC
Q psy4606 25 EGGTIKLVCKAKGYP------RPHITWKRE 48 (69)
Q Consensus 25 ~g~~~~l~C~~~g~P------~P~~~W~~~ 48 (69)
.|++++|.|.....+ .+.+.|++.
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~ 30 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKL 30 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEe
Confidence 378999999987753 568999984
No 164
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=95.26 E-value=0.066 Score=25.87 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=22.2
Q ss_pred CceEEecCCCeEEEEeeEeeec----CCeEEEEe
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYP----RPHITWKR 47 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P----~P~~~W~~ 47 (69)
+..+.+..|+.++|.|...... ...+.|++
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~ 38 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSF 38 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEE
Confidence 4456677899999999886532 25689986
No 165
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=95.22 E-value=0.054 Score=28.85 Aligned_cols=29 Identities=28% Similarity=0.590 Sum_probs=24.6
Q ss_pred eEEecCCCeEEEEeeEe-eecCCeEEEEeC
Q psy4606 20 DIMAPEGGTIKLVCKAK-GYPRPHITWKRE 48 (69)
Q Consensus 20 ~~~~~~g~~~~l~C~~~-g~P~P~~~W~~~ 48 (69)
...+.+|+++.|.|.-. +...++++|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~ 53 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKN 53 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEc
Confidence 46788999999999984 667889999984
No 166
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=95.01 E-value=0.1 Score=25.32 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=22.7
Q ss_pred CceEEecCCCeEEEEeeEeeec----CCeEEEEe
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYP----RPHITWKR 47 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P----~P~~~W~~ 47 (69)
+..+.+.+|+.+.|.|.....+ ...+.|++
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~ 38 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF 38 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence 5567788999999999876533 24699974
No 167
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=94.77 E-value=0.073 Score=25.90 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=18.6
Q ss_pred CCCeEEEEeeEeeec------------CCeEEEEeC
Q psy4606 25 EGGTIKLVCKAKGYP------------RPHITWKRE 48 (69)
Q Consensus 25 ~g~~~~l~C~~~g~P------------~P~~~W~~~ 48 (69)
.|++++|.|.-.... .+.+.|+|.
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~ 36 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFI 36 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEe
Confidence 378999999987532 468999984
No 168
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=94.70 E-value=0.076 Score=25.08 Aligned_cols=24 Identities=25% Similarity=0.710 Sum_probs=18.7
Q ss_pred CCCeEEEEeeEeeec------CCeEEEEeC
Q psy4606 25 EGGTIKLVCKAKGYP------RPHITWKRE 48 (69)
Q Consensus 25 ~g~~~~l~C~~~g~P------~P~~~W~~~ 48 (69)
.|++++|.|.....| ...+.|+|.
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~ 30 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKL 30 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEe
Confidence 478999999887653 357999984
No 169
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=94.47 E-value=0.064 Score=23.79 Aligned_cols=27 Identities=30% Similarity=0.622 Sum_probs=18.5
Q ss_pred cCCCeEEEEeeEeeecCCeEEEEeCCCcEEE
Q psy4606 24 PEGGTIKLVCKAKGYPRPHITWKREDGQEII 54 (69)
Q Consensus 24 ~~g~~~~l~C~~~g~P~P~~~W~~~~~~~~~ 54 (69)
..|..|+|.|...+ ..+.|.+ ++..+.
T Consensus 5 isGTtVtlTCP~~~---~~i~W~~-n~~~~~ 31 (65)
T cd07692 5 ISGTTVTVTCPLSG---DDIKWKK-NDQVSQ 31 (65)
T ss_pred EeccEEEEECCCCC---CCceEEe-CCccCC
Confidence 35889999996542 2289999 554444
No 170
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=94.46 E-value=0.044 Score=25.05 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=19.2
Q ss_pred CCeEEEEeeEeeecCCeEEEEeC
Q psy4606 26 GGTIKLVCKAKGYPRPHITWKRE 48 (69)
Q Consensus 26 g~~~~l~C~~~g~P~P~~~W~~~ 48 (69)
|++++|.|.....+...+.|++.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~ 23 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKG 23 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECC
Confidence 67899999987766678999984
No 171
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=94.33 E-value=0.096 Score=24.36 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=21.8
Q ss_pred EecCCCeEEEEeeEee-ecCCeEEEEeC
Q psy4606 22 MAPEGGTIKLVCKAKG-YPRPHITWKRE 48 (69)
Q Consensus 22 ~~~~g~~~~l~C~~~g-~P~P~~~W~~~ 48 (69)
.+.+|++++|.|.... .....+.|++.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~ 30 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKW 30 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECC
Confidence 5678999999998765 45678899984
No 172
>KOG3515|consensus
Probab=94.11 E-value=0.071 Score=33.77 Aligned_cols=28 Identities=18% Similarity=0.432 Sum_probs=24.1
Q ss_pred EecCCCeEEEEeeEee-ecCCeEEEEeCC
Q psy4606 22 MAPEGGTIKLVCKAKG-YPRPHITWKRED 49 (69)
Q Consensus 22 ~~~~g~~~~l~C~~~g-~P~P~~~W~~~~ 49 (69)
.+..|+.+.|.|.+.| .|.+.+.|++.+
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~ 46 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHST 46 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecC
Confidence 7788999999999998 567899999943
No 173
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=93.87 E-value=0.2 Score=24.23 Aligned_cols=30 Identities=13% Similarity=0.369 Sum_probs=21.4
Q ss_pred eEEecCCCeEEEEeeEe-----------eecCCeEEEEeCCC
Q psy4606 20 DIMAPEGGTIKLVCKAK-----------GYPRPHITWKREDG 50 (69)
Q Consensus 20 ~~~~~~g~~~~l~C~~~-----------g~P~P~~~W~~~~~ 50 (69)
...+.+|+.+.|.|... ......+.|+| ++
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK-~~ 49 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYK-SS 49 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEE-CC
Confidence 35677899999999861 12234789999 54
No 174
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=93.11 E-value=0.36 Score=23.44 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=22.1
Q ss_pred CceEEecCCCeEEEEeeEeeec------CCeEEEEeC
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYP------RPHITWKRE 48 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P------~P~~~W~~~ 48 (69)
+..+.+.+|+.++|.|.-.... .-.+.|++.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq 42 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKG 42 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeC
Confidence 5556778999999999754211 245889984
No 175
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=92.88 E-value=0.27 Score=23.66 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=18.6
Q ss_pred CCCeEEEEeeEeeec----------CCeEEEEeC
Q psy4606 25 EGGTIKLVCKAKGYP----------RPHITWKRE 48 (69)
Q Consensus 25 ~g~~~~l~C~~~g~P----------~P~~~W~~~ 48 (69)
.|++++|.|.....+ ...+.|+|.
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~ 34 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKL 34 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEe
Confidence 378999999997644 256899984
No 176
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=92.23 E-value=0.58 Score=22.90 Aligned_cols=30 Identities=17% Similarity=0.388 Sum_probs=22.2
Q ss_pred CceEEecCCCeEEEEeeEeee----cCCeEEEEe
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGY----PRPHITWKR 47 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~----P~P~~~W~~ 47 (69)
+..+.+..|+.+.|.|..... +...+.|.+
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~ 38 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHY 38 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEE
Confidence 344566789999999999763 346899954
No 177
>PHA03052 Hypothetical protein; Provisional
Probab=92.22 E-value=0.55 Score=21.02 Aligned_cols=35 Identities=20% Similarity=0.512 Sum_probs=25.9
Q ss_pred CceEEecCCCeEEEEeeEe-eec--CCeEEEEeCCCcEE
Q psy4606 18 SSDIMAPEGGTIKLVCKAK-GYP--RPHITWKREDGQEI 53 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~-g~P--~P~~~W~~~~~~~~ 53 (69)
|..+.+..|+.+++.|++. |.| .+.+.|.- ++..+
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~-N~~~~ 41 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWIS-NGMYY 41 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEe-CCcEE
Confidence 3456677899999999994 444 46788987 66666
No 178
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=92.14 E-value=0.53 Score=23.24 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=20.6
Q ss_pred EEecCCCeEEEEeeEeeecCC---eEEEEeC
Q psy4606 21 IMAPEGGTIKLVCKAKGYPRP---HITWKRE 48 (69)
Q Consensus 21 ~~~~~g~~~~l~C~~~g~P~P---~~~W~~~ 48 (69)
..+..++.++|.|.+.|.-.. .+.|.|.
T Consensus 8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq 38 (115)
T cd05721 8 VLASSNGAASLVCEYTYNGFSKEFRASLLKG 38 (115)
T ss_pred eEEcCCCCEEEEEEecCCccccEEEEEEEEe
Confidence 445567889999999884433 5789884
No 179
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=91.62 E-value=0.14 Score=23.99 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=19.3
Q ss_pred cCCCeEEEEeeEee-ecCCeEEEEeC
Q psy4606 24 PEGGTIKLVCKAKG-YPRPHITWKRE 48 (69)
Q Consensus 24 ~~g~~~~l~C~~~g-~P~P~~~W~~~ 48 (69)
..|+.++|.|.... .....+.|++.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~ 27 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFN 27 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecC
Confidence 36899999998754 55567899983
No 180
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=91.21 E-value=0.32 Score=23.27 Aligned_cols=25 Identities=20% Similarity=0.615 Sum_probs=19.0
Q ss_pred CeEEEEeeE-eeecCCeEEEEeC-CCc
Q psy4606 27 GTIKLVCKA-KGYPRPHITWKRE-DGQ 51 (69)
Q Consensus 27 ~~~~l~C~~-~g~P~P~~~W~~~-~~~ 51 (69)
..+...|.+ .|+|.+.++|... +|+
T Consensus 21 ~v~VA~CiSa~GrPpa~ItW~t~l~G~ 47 (98)
T cd05890 21 KMLVATCVSANGKPPSVVRWDTRLKGE 47 (98)
T ss_pred eEEEEEEEcCCCcCCcEeEEEccCCCc
Confidence 456788995 6799999999863 343
No 181
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=91.09 E-value=0.31 Score=22.47 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=16.6
Q ss_pred CeEEEEeeEeeec---CCeEEEEeC
Q psy4606 27 GTIKLVCKAKGYP---RPHITWKRE 48 (69)
Q Consensus 27 ~~~~l~C~~~g~P---~P~~~W~~~ 48 (69)
+++.|.|.....+ ...+.|+|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~ 25 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKI 25 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeE
Confidence 3689999987744 447899984
No 182
>smart00406 IGv Immunoglobulin V-Type.
Probab=90.53 E-value=0.62 Score=20.33 Aligned_cols=21 Identities=33% Similarity=0.876 Sum_probs=15.4
Q ss_pred eEEEEeeEeeecCC--eEEEEeC
Q psy4606 28 TIKLVCKAKGYPRP--HITWKRE 48 (69)
Q Consensus 28 ~~~l~C~~~g~P~P--~~~W~~~ 48 (69)
.+.|.|.......+ .+.|++.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~ 23 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQ 23 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEe
Confidence 36899988775544 7889883
No 183
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=90.38 E-value=0.84 Score=21.18 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=15.3
Q ss_pred CCeEEEEeeEeeecC---CeEEEEeC
Q psy4606 26 GGTIKLVCKAKGYPR---PHITWKRE 48 (69)
Q Consensus 26 g~~~~l~C~~~g~P~---P~~~W~~~ 48 (69)
|+++.|.|...+... ..+.|++.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~ 26 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRS 26 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEEC
Confidence 578899998753211 35778874
No 184
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=90.14 E-value=0.45 Score=22.88 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=19.0
Q ss_pred EecCCCeEEEEeeEeeecCC--eEEEEe
Q psy4606 22 MAPEGGTIKLVCKAKGYPRP--HITWKR 47 (69)
Q Consensus 22 ~~~~g~~~~l~C~~~g~P~P--~~~W~~ 47 (69)
.+.+|+++.|.|.. .|.. .+.|+|
T Consensus 9 ~~~~G~~V~L~v~~--~p~~~~~~~W~k 34 (105)
T cd05774 9 QVAEGENVLLLVHN--LPENLLAYAWYK 34 (105)
T ss_pred cccCCCCEEEEecC--CCCCceEEEEEc
Confidence 45679999999864 5655 899999
No 185
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=89.85 E-value=0.81 Score=22.21 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=17.0
Q ss_pred CCeEEEEeeEeeec-------CCeEEEEeC
Q psy4606 26 GGTIKLVCKAKGYP-------RPHITWKRE 48 (69)
Q Consensus 26 g~~~~l~C~~~g~P-------~P~~~W~~~ 48 (69)
|+++.|.|.-.-.| .+.+.|.+.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~ 31 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKL 31 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEe
Confidence 68899999955322 478999973
No 186
>PHA03269 envelope glycoprotein C; Provisional
Probab=89.78 E-value=2 Score=26.54 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=30.3
Q ss_pred EEcCCEEeecCCCceEEecCCCeEEEEeeEee-ecC--CeEEEEeCCCcEEE
Q psy4606 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPR--PHITWKREDGQEII 54 (69)
Q Consensus 6 V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~--P~~~W~~~~~~~~~ 54 (69)
+..+|.+... ...+.+|+.....|.+.. +|. -.+.|+. |+..+.
T Consensus 326 ~yr~PsVsV~----p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~-ng~~V~ 372 (566)
T PHA03269 326 SYKRPNITVI----GDPVLLGNPYAAYCKVNKYYPPHSVIVKWTS-NFGNIG 372 (566)
T ss_pred EecCCCcccc----CCccccCCCceEEEEeeeecCCCceEEEEEe-CCcccC
Confidence 3356655433 234668999999999998 664 3578999 666654
No 187
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=89.26 E-value=0.72 Score=21.47 Aligned_cols=23 Identities=26% Similarity=0.634 Sum_probs=16.1
Q ss_pred CCeEEEEeeEeeecC-CeEEEEeC
Q psy4606 26 GGTIKLVCKAKGYPR-PHITWKRE 48 (69)
Q Consensus 26 g~~~~l~C~~~g~P~-P~~~W~~~ 48 (69)
|++++|.|.-..... -.+.|+|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~ 24 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKI 24 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEc
Confidence 678999998544322 26899984
No 188
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=88.78 E-value=1.5 Score=20.23 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=19.1
Q ss_pred eEEEEeeEeeecCCeEEEEeCCCcEE
Q psy4606 28 TIKLVCKAKGYPRPHITWKREDGQEI 53 (69)
Q Consensus 28 ~~~l~C~~~g~P~P~~~W~~~~~~~~ 53 (69)
...|.+++.|. .+.+.|+- ||+.+
T Consensus 31 ~~~l~l~a~~~-~~~~~W~v-dg~~~ 54 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFV-DGEPL 54 (89)
T ss_pred cceEEEEEeCC-CCcEEEEE-CCEEc
Confidence 66777777776 56999999 88887
No 189
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=84.77 E-value=2.9 Score=19.59 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=23.0
Q ss_pred eEEecCCCeEEEEeeEee--e---cCCeEEEEeCCCcEEE
Q psy4606 20 DIMAPEGGTIKLVCKAKG--Y---PRPHITWKREDGQEII 54 (69)
Q Consensus 20 ~~~~~~g~~~~l~C~~~g--~---P~P~~~W~~~~~~~~~ 54 (69)
...+..|+.++..|...- . ....+.|.. +++.++
T Consensus 12 ~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkl-n~~~iP 50 (89)
T PF06328_consen 12 SPVVSLGSNVTASCVLKQNCSHSVNASQIVWKL-NGEKIP 50 (89)
T ss_dssp SSEEETTS-EEEEEEE-CCCHCT-STTCEEEEC-SSCEST
T ss_pred CCEEeCCCCEEEEEEEECCCCCCcccceEEEEE-CCEECC
Confidence 345668999999999853 2 567899998 666443
No 190
>KOG3515|consensus
Probab=84.61 E-value=3.7 Score=26.62 Aligned_cols=46 Identities=35% Similarity=0.777 Sum_probs=30.9
Q ss_pred EEEEcCCEEeecCCCceEEecCCCeEEEEeeEe--eecCCeEEEEeCCCcE
Q psy4606 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK--GYPRPHITWKREDGQE 52 (69)
Q Consensus 4 l~V~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~--g~P~P~~~W~~~~~~~ 52 (69)
+.|.++|..... ........+..+.+.|.+. +.|.+.+.|.. +...
T Consensus 92 l~v~~~pa~~~~--~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~-n~r~ 139 (741)
T KOG3515|consen 92 LDVDYPPACLPE--LGEIFQVDKGVVQIICSAKVAGRPNPNLRWGF-NNRA 139 (741)
T ss_pred eccccCcccccc--ccchhhhcCCeEEEEEeecCCCCCCcceeeee-ccEE
Confidence 445566654433 3344566788999999554 48889999998 5543
No 191
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=83.83 E-value=3.4 Score=20.47 Aligned_cols=22 Identities=27% Similarity=0.754 Sum_probs=17.0
Q ss_pred CCeEEEEeeEeeecC-----------CeEEEEe
Q psy4606 26 GGTIKLVCKAKGYPR-----------PHITWKR 47 (69)
Q Consensus 26 g~~~~l~C~~~g~P~-----------P~~~W~~ 47 (69)
+++++|.|...-.|. +.+.|.+
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~ 34 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTK 34 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEE
Confidence 678999999985542 3889987
No 192
>PHA03273 envelope glycoprotein C; Provisional
Probab=80.82 E-value=11 Score=23.33 Aligned_cols=43 Identities=16% Similarity=0.361 Sum_probs=30.5
Q ss_pred EcCCEEeecCCCceEEecCCCeEEEEeeEee-ecC--CeEEEEeCCCcEEE
Q psy4606 7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPR--PHITWKREDGQEII 54 (69)
Q Consensus 7 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~--P~~~W~~~~~~~~~ 54 (69)
..+|.+... ...+.+|+.....|.+.. +|. -.+.|++ |+..+.
T Consensus 235 yr~Psvsv~----~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~-dg~~V~ 280 (486)
T PHA03273 235 YNAPLVDLS----VHPSLKGENYRAVCVVASYFPHSSVKLRWYK-NAKEVD 280 (486)
T ss_pred ecCCccccc----CCccccCCCceEEEEeeeecCCCceEEEEEe-CCeecc
Confidence 356665443 224568999999999998 664 3678999 777665
No 193
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=80.36 E-value=3.1 Score=19.55 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=15.3
Q ss_pred CeEEEEeeEeeec---CCeEEEEeC
Q psy4606 27 GTIKLVCKAKGYP---RPHITWKRE 48 (69)
Q Consensus 27 ~~~~l~C~~~g~P---~P~~~W~~~ 48 (69)
.++.|.|.-...+ ...+.|+|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~ 25 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRE 25 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEc
Confidence 3688999876433 347889984
No 194
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=79.59 E-value=2.4 Score=20.05 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=15.3
Q ss_pred eEEEEeeEee-ecCCeEEEEeC
Q psy4606 28 TIKLVCKAKG-YPRPHITWKRE 48 (69)
Q Consensus 28 ~~~l~C~~~g-~P~P~~~W~~~ 48 (69)
++.|.|.-.. ....+++|.|.
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~ 23 (96)
T cd05889 2 KMKLECVYPKTGVLIQVSWTKH 23 (96)
T ss_pred CEEEEeEcCCCCcEEEEEEEEc
Confidence 5788998754 34578889984
No 195
>KOG4597|consensus
Probab=78.17 E-value=1.3 Score=27.26 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=26.1
Q ss_pred CceEEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKR 47 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~~g~P~P~~~W~~ 47 (69)
+....+..++...+.|-+.|.|.|.|+|.+
T Consensus 203 pa~w~vg~wetcS~tCg~~G~q~r~V~c~q 232 (560)
T KOG4597|consen 203 PAEWFVGDWETCSSTCGVQGRQYRVVTCEQ 232 (560)
T ss_pred cchhhcccchhhcccccccCCcCceeeeeh
Confidence 444567789999999999999999999986
No 196
>PHA03112 IL-18 binding protein; Provisional
Probab=74.11 E-value=9.6 Score=19.65 Aligned_cols=28 Identities=18% Similarity=0.490 Sum_probs=21.5
Q ss_pred EecCCCeEEEEeeEee-ecC-CeEEEEeCC
Q psy4606 22 MAPEGGTIKLVCKAKG-YPR-PHITWKRED 49 (69)
Q Consensus 22 ~~~~g~~~~l~C~~~g-~P~-P~~~W~~~~ 49 (69)
...+++.+.|.|.+-+ .|. ..+.|...+
T Consensus 34 p~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 34 PTKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred ccCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 3456889999999987 575 678899633
No 197
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=73.13 E-value=5.2 Score=18.94 Aligned_cols=22 Identities=14% Similarity=0.424 Sum_probs=15.5
Q ss_pred CeEEEEeeEee-ecCCeEEEEeC
Q psy4606 27 GTIKLVCKAKG-YPRPHITWKRE 48 (69)
Q Consensus 27 ~~~~l~C~~~g-~P~P~~~W~~~ 48 (69)
+++.|.|.-.. ....+++|.|.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~ 23 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKI 23 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEc
Confidence 36889998764 23357899883
No 198
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=69.20 E-value=9.1 Score=17.26 Aligned_cols=22 Identities=32% Similarity=0.699 Sum_probs=15.5
Q ss_pred CCeEEEEeeEeeecCCeEEEEeCCCcE
Q psy4606 26 GGTIKLVCKAKGYPRPHITWKREDGQE 52 (69)
Q Consensus 26 g~~~~l~C~~~g~P~P~~~W~~~~~~~ 52 (69)
.+.+.|.|.+ .-.++|++ +...
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~ 27 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEI 27 (69)
T ss_pred CceEEEEecC----CCcEEEec-Cccc
Confidence 4578999976 24599998 5533
No 199
>PHA03270 envelope glycoprotein C; Provisional
Probab=64.53 E-value=31 Score=21.34 Aligned_cols=42 Identities=24% Similarity=0.474 Sum_probs=29.4
Q ss_pred cCCEEeecCCCceEEecCCCeEEEEeeEee-ecC--CeEEEEeCCCcEEE
Q psy4606 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPR--PHITWKREDGQEII 54 (69)
Q Consensus 8 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g-~P~--P~~~W~~~~~~~~~ 54 (69)
.+|.+...+ ..+.+|+.....|.+.. +|. -.+.|++ |+..+.
T Consensus 220 r~Psvsv~~----~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~-ng~~V~ 264 (466)
T PHA03270 220 RRPSLSIRP----HAVLEGEPFGATCVAANYYPGDRAAFRWFE-GGDEVF 264 (466)
T ss_pred cCCcccccC----CccccCCCceEEEEeeeecCCCceEEEEEe-CCcccc
Confidence 566654431 24568999999999998 664 3678999 676653
No 200
>PHA03271 envelope glycoprotein C; Provisional
Probab=61.20 E-value=37 Score=21.05 Aligned_cols=32 Identities=22% Similarity=0.541 Sum_probs=25.1
Q ss_pred EecCCCeEEEEeeEee-ecC--CeEEEEeCCCcEEE
Q psy4606 22 MAPEGGTIKLVCKAKG-YPR--PHITWKREDGQEII 54 (69)
Q Consensus 22 ~~~~g~~~~l~C~~~g-~P~--P~~~W~~~~~~~~~ 54 (69)
.+..|+.....|.+.. +|. -.+.|+. ||..+.
T Consensus 256 PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~-nG~~V~ 290 (490)
T PHA03271 256 PVLSGENYKASCIVRHFYPPGSVYVSWRQ-NGNIAT 290 (490)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEe-CCcccc
Confidence 4568999999999998 664 3578999 777654
No 201
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=61.15 E-value=8.9 Score=21.91 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=13.5
Q ss_pred cCCeEEEEeCCCcEEEec
Q psy4606 39 PRPHITWKREDGQEIIIK 56 (69)
Q Consensus 39 P~P~~~W~~~~~~~~~~~ 56 (69)
..|.+.|..++|+.+...
T Consensus 11 iDP~y~W~GP~g~~l~gn 28 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGN 28 (271)
T ss_pred CCCceEEECCCCcccCCC
Confidence 568999998777776543
No 202
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=57.75 E-value=20 Score=16.96 Aligned_cols=21 Identities=24% Similarity=0.608 Sum_probs=14.2
Q ss_pred eEEEEeeEee-ecCC---eEEEEeC
Q psy4606 28 TIKLVCKAKG-YPRP---HITWKRE 48 (69)
Q Consensus 28 ~~~l~C~~~g-~P~P---~~~W~~~ 48 (69)
.+.|.|.-.. .|.. ++.|.+.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~ 26 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKL 26 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEEC
Confidence 5789998864 2221 6899873
No 203
>KOG1480|consensus
Probab=53.88 E-value=3.2 Score=27.16 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=28.0
Q ss_pred CceEEecCCCeEEEEeeE-eeecCCeEEEEeCCCcEEEe
Q psy4606 18 SSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEIII 55 (69)
Q Consensus 18 ~~~~~~~~g~~~~l~C~~-~g~P~P~~~W~~~~~~~~~~ 55 (69)
+....+..++.+.+.|.. .|.|...+.|++ ++..+..
T Consensus 136 p~~q~V~~~s~~~l~cr~pe~~paae~~w~k-~e~~~~p 173 (909)
T KOG1480|consen 136 PVGQEVQEETTLQLPCRPPEGDPKAEVEWLK-NEVVIDP 173 (909)
T ss_pred hhhheecccccccccccCcccchhhhhhccc-cCCCCCc
Confidence 444556677888888877 689999999999 6766655
No 204
>KOG1026|consensus
Probab=53.81 E-value=10 Score=24.95 Aligned_cols=27 Identities=33% Similarity=0.679 Sum_probs=24.3
Q ss_pred EEecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606 21 IMAPEGGTIKLVCKAKGYPRPHITWKR 47 (69)
Q Consensus 21 ~~~~~g~~~~l~C~~~g~P~P~~~W~~ 47 (69)
..+..+..+++.|.+.|.|.|.+.|+.
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~ 228 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFP 228 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeec
Confidence 456778999999999999999999987
No 205
>KOG3743|consensus
Probab=39.07 E-value=54 Score=21.02 Aligned_cols=26 Identities=27% Similarity=0.569 Sum_probs=19.7
Q ss_pred EecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606 22 MAPEGGTIKLVCKAKGYPRPHITWKR 47 (69)
Q Consensus 22 ~~~~g~~~~l~C~~~g~P~P~~~W~~ 47 (69)
.+.-|..+.|.|.++|.-.|.+.-.|
T Consensus 379 ~i~ygsvV~LV~~vTG~~lppLIIRK 404 (622)
T KOG3743|consen 379 YIKYGSVVKLVCSVTGITLPPLIIRK 404 (622)
T ss_pred ceeeccEEEEEeecccccCCcceeee
Confidence 35568899999999997666655544
No 206
>COG3908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.44 E-value=36 Score=15.37 Aligned_cols=13 Identities=31% Similarity=0.692 Sum_probs=10.0
Q ss_pred EEEeeEeeecCCe
Q psy4606 30 KLVCKAKGYPRPH 42 (69)
Q Consensus 30 ~l~C~~~g~P~P~ 42 (69)
...|.++|.|.|-
T Consensus 30 fV~CAVtgk~IPl 42 (77)
T COG3908 30 FVLCAVTGKPIPL 42 (77)
T ss_pred EEEEEecCCcccH
Confidence 4579999988873
No 207
>PF09270 BTD: Beta-trefoil DNA-binding domain; InterPro: IPR015350 This DNA-binding domain adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and corepressors (SMRT/N-Cor and CIR) []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2FO1_A 3NBN_A 2F8X_C 3V79_C 3IAG_C 3BRG_C.
Probab=34.28 E-value=34 Score=18.08 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=18.4
Q ss_pred EecCCCeEEEEeeEeeecCCeEEEEe
Q psy4606 22 MAPEGGTIKLVCKAKGYPRPHITWKR 47 (69)
Q Consensus 22 ~~~~g~~~~l~C~~~g~P~P~~~W~~ 47 (69)
...-|+.+.|.|..+|.-.|.+.-.|
T Consensus 69 ~I~YGs~V~Lv~~~TGv~sppliIRK 94 (158)
T PF09270_consen 69 YIHYGSTVVLVCSVTGVSSPPLIIRK 94 (158)
T ss_dssp B-BTTSEEEEEETTT-EBEEEEEEEE
T ss_pred ceecCCEEEEEECCCCcccCceEEEE
Confidence 34569999999999997766665544
No 208
>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein [].
Probab=31.97 E-value=74 Score=17.02 Aligned_cols=30 Identities=20% Similarity=0.625 Sum_probs=16.8
Q ss_pred eeecCCeEE--EEeCCCcEEEecCCcEEEeCCC
Q psy4606 36 KGYPRPHIT--WKREDGQEIIIKEGNTMVPKSK 66 (69)
Q Consensus 36 ~g~P~P~~~--W~~~~~~~~~~~~~~~~~~~~~ 66 (69)
.|+|.-.+. |.+ ++..+....+..+....+
T Consensus 110 ~GfpS~~i~GtY~~-~g~~~~~~~r~VV~~~~~ 141 (175)
T PF10738_consen 110 SGFPSSQIEGTYDK-DGMRLHTSQRTVVIPGDD 141 (175)
T ss_pred CCCceeEEEEEEee-CCEEeEeEEEEEEEeCCC
Confidence 467777664 777 676655444334444333
No 209
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=27.51 E-value=83 Score=16.06 Aligned_cols=30 Identities=17% Similarity=0.370 Sum_probs=16.9
Q ss_pred ecCCCeEEEEeeEeee-cC----CeEEEEeCCCcEE
Q psy4606 23 APEGGTIKLVCKAKGY-PR----PHITWKREDGQEI 53 (69)
Q Consensus 23 ~~~g~~~~l~C~~~g~-P~----P~~~W~~~~~~~~ 53 (69)
..-.+.+.|.|.+... .. =.+.|.. ++..+
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~-~~~~I 58 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKF-KNKDI 58 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEE-TTEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEE-CCeEE
Confidence 3457889999999752 22 2478998 66554
No 210
>PHA02982 hypothetical protein; Provisional
Probab=26.69 E-value=1.3e+02 Score=17.05 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=23.5
Q ss_pred eEEecCCCeEEEEeeEe-eecCCeEEEEeCCCcEEE
Q psy4606 20 DIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEII 54 (69)
Q Consensus 20 ~~~~~~g~~~~l~C~~~-g~P~P~~~W~~~~~~~~~ 54 (69)
++.+..++.+.|.|.-. +.-..+..|.++++..+.
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la 68 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLA 68 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEE
Confidence 34455689999999843 244467789986665443
No 211
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=26.03 E-value=1e+02 Score=16.99 Aligned_cols=28 Identities=21% Similarity=0.488 Sum_probs=15.3
Q ss_pred eEEEEeCCCcEEEecCCcEEEeCCCCCC
Q psy4606 42 HITWKREDGQEIIIKEGNTMVPKSKDIF 69 (69)
Q Consensus 42 ~~~W~~~~~~~~~~~~~~~~~~~~~~l~ 69 (69)
.+.|..+..-.+..+..+-.+..+|.||
T Consensus 116 ~i~WiDD~~L~vIIG~a~GTvS~GGnLy 143 (200)
T PF15525_consen 116 YIEWIDDNNLAVIIGYAHGTVSKGGNLY 143 (200)
T ss_pred eeEEecCCcEEEEEccccceEccCCeEE
Confidence 6779873233334444555666666554
No 212
>PHA03402 hypothetical protein; Provisional
Probab=25.45 E-value=85 Score=14.45 Aligned_cols=18 Identities=33% Similarity=0.658 Sum_probs=14.1
Q ss_pred EEecCCCeEEEEeeEeee
Q psy4606 21 IMAPEGGTIKLVCKAKGY 38 (69)
Q Consensus 21 ~~~~~g~~~~l~C~~~g~ 38 (69)
+....|+.+.+.|+....
T Consensus 11 ITS~~GsTISi~CEskS~ 28 (81)
T PHA03402 11 ITSENGSTISIYCESKSK 28 (81)
T ss_pred EecCCCCEEEEEEcccCc
Confidence 556779999999997653
No 213
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=24.96 E-value=97 Score=17.27 Aligned_cols=18 Identities=33% Similarity=0.815 Sum_probs=14.8
Q ss_pred cCCCeEEEEeeEeeecCC
Q psy4606 24 PEGGTIKLVCKAKGYPRP 41 (69)
Q Consensus 24 ~~g~~~~l~C~~~g~P~P 41 (69)
...+.+...|...|+|..
T Consensus 146 ~~~~~~~YtC~l~GYP~~ 163 (211)
T PF02124_consen 146 DEDGPVEYTCRLIGYPDI 163 (211)
T ss_pred ccCCceeEEEEEeeCCCC
Confidence 456778999999999875
No 214
>PTZ00096 40S ribosomal protein S15; Provisional
Probab=23.57 E-value=1.1e+02 Score=15.97 Aligned_cols=18 Identities=22% Similarity=0.045 Sum_probs=11.2
Q ss_pred eecCCeEEEEeCCCcEEEe
Q psy4606 37 GYPRPHITWKREDGQEIII 55 (69)
Q Consensus 37 g~P~P~~~W~~~~~~~~~~ 55 (69)
..|.+..+|.+ +...++.
T Consensus 71 ~k~~~ikT~~R-~~~IlP~ 88 (143)
T PTZ00096 71 EKPKAVKTHLR-DMIIVPE 88 (143)
T ss_pred cCCcceeEecc-cCeeCcc
Confidence 35677778887 5544443
No 215
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=22.27 E-value=92 Score=13.73 Aligned_cols=20 Identities=30% Similarity=0.662 Sum_probs=12.4
Q ss_pred cCCCeEEEEeeEeeecCCeEEEEe
Q psy4606 24 PEGGTIKLVCKAKGYPRPHITWKR 47 (69)
Q Consensus 24 ~~g~~~~l~C~~~g~P~P~~~W~~ 47 (69)
..|++++| .|.|...++|++
T Consensus 3 ~~G~N~TL----~Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 3 TVGSNVTL----VGPPDGPVTWYK 22 (63)
T ss_pred eEcCcEEE----eCCCCCceEEEE
Confidence 34666654 354656789984
No 216
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=21.93 E-value=79 Score=12.82 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=9.0
Q ss_pred EEEeeEeeecCC
Q psy4606 30 KLVCKAKGYPRP 41 (69)
Q Consensus 30 ~l~C~~~g~P~P 41 (69)
...|-++|.+.|
T Consensus 7 ~V~CAVTg~~Ip 18 (42)
T PF09866_consen 7 FVRCAVTGQPIP 18 (42)
T ss_pred EEEEEeeCCccc
Confidence 457888887776
No 217
>PHA02840 hypothetical protein; Provisional
Probab=20.09 E-value=1.2e+02 Score=14.08 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=14.1
Q ss_pred EEecCCCeEEEEeeEeee
Q psy4606 21 IMAPEGGTIKLVCKAKGY 38 (69)
Q Consensus 21 ~~~~~g~~~~l~C~~~g~ 38 (69)
+....|..+.+.|+....
T Consensus 10 ITS~~GstISiyCEsks~ 27 (82)
T PHA02840 10 ITSNSGNTISIYCETKTT 27 (82)
T ss_pred EecCCCCEEEEEEcccCc
Confidence 556779999999997553
Done!