RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4606
(69 letters)
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 64.3 bits (156), Expect = 8e-15
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
+L VV P + S P+ + + C +P PH+ W +G E N V
Sbjct: 98 HLSVVKPLTLSVH--SERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGV 155
Query: 63 PKSKD 67
K KD
Sbjct: 156 MKEKD 160
Score = 23.4 bits (50), Expect = 7.4
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 21 IMAPEGGTIKLVCKAK---GYPRPHITWKREDGQEIIIKEGNT 60
+ A G + L + P ++W + E + G
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRM 43
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 63.0 bits (153), Expect = 6e-14
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 1 MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNT 60
++V + ++ + + + EG +VC P I WK G+++I+K+
Sbjct: 90 EATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVILKKDVR 148
Query: 61 MV 62
+
Sbjct: 149 FI 150
Score = 57.2 bits (138), Expect = 7e-12
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54
+ V VPP + +S + A G ++ LVC A G+P P ++W + DG+ I
Sbjct: 189 VIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTK-DGEPIE 238
Score = 46.0 bits (109), Expect = 7e-08
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPR-PHITWKREDGQEIIIKEGNTMV 62
L V + P S G + +C+ G + I+W +G+++ + V
Sbjct: 3 LQVDIVP--------SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISV 54
Query: 63 PKSKD 67
+ D
Sbjct: 55 VWNDD 59
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 59.8 bits (145), Expect = 3e-13
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
+ V VPP I + S + A G + C+A G P P I+W R +G+ I E +
Sbjct: 91 VIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLIEENEKYILKG 149
Score = 47.5 bits (113), Expect = 1e-08
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
S +G ++VC+ P P ++W +E+ N
Sbjct: 10 SPQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEVTTISDNRFA 52
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 59.8 bits (145), Expect = 7e-13
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
+ V VPP I + S + A G + C+A G P P I+W R +G+ I E +
Sbjct: 187 VIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLIEENEKYILKG 245
Score = 50.6 bits (121), Expect = 2e-09
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
L++ S +G ++VC+ P P ++W +E+
Sbjct: 91 VVLEIYQKLTFREV--VSPQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEV 139
Score = 45.6 bits (108), Expect = 1e-07
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
+ + S S + G + C A G P I W G++II + +
Sbjct: 2 MALLQV--TISLSKVELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQK 55
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 56.4 bits (136), Expect = 2e-12
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTM 61
PP I+ SD++ +G L CKA+G P P I W + G+ + + +
Sbjct: 6 EDFPPRIVEH--PSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPR 58
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 57.6 bits (139), Expect = 2e-12
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
++V PDI + EG + CK+ GYP P W++++
Sbjct: 85 ATIEVKAAPDITGHKR--SENKNEGQDAMMYCKSVGYPHPEWMWRKKENG 132
Score = 43.3 bits (102), Expect = 5e-07
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHIT--WKREDGQEI 53
P I+ S I+ + L C + W + +G E+
Sbjct: 2 NEPRIV--TSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTK-NGVEL 46
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 58.7 bits (142), Expect = 3e-12
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTM 61
L V+VPP LN S++ A E I+ C G P P + W + +G +I + +
Sbjct: 305 AELTVLVPPWFLNH--PSNLYAYESMDIEFECAVSGKPVPTVNWMK-NGDVVIPSDYFQI 361
Query: 62 VPKS 65
V S
Sbjct: 362 VGGS 365
Score = 51.8 bits (124), Expect = 7e-10
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNT 60
+ V P L++ + I A G T+ L C+ G P P I W++ + Q++ G++
Sbjct: 116 VMVAGPLRFLSQ--TESITAFMGDTVLLKCEVIGDPMPTIHWQK-NQQDLNPIPGDS 169
Score = 51.8 bits (124), Expect = 7e-10
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 3 YLDVVVPPDILNE----ESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG 58
+ ++ P + + + S+++A EG L C GYP P TW R + I ++
Sbjct: 209 EVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR-GEEVIQLRSK 267
Query: 59 NTMV 62
+
Sbjct: 268 KYSL 271
Score = 48.7 bits (116), Expect = 9e-09
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEIIIKEGN 59
+ ++E SD + GG + L C A+ P I WK+ DG + + +
Sbjct: 15 HHGGRRSLHFVSE--PSDAVTMRGGNVLLNCSAESDRGVPVIKWKK-DGLILALGMDD 69
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 57.1 bits (138), Expect = 3e-12
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGN 59
+ + N + EG +VC P I WK G+++I+K+
Sbjct: 95 VKIFQKLMFKNA--PTPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVILKKDV 147
Score = 47.1 bits (112), Expect = 2e-08
Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPR-PHITWKREDGQEIIIKEGNTMVPKSKD 67
+ + S G + +C+ G + I+W +G+++ + V + D
Sbjct: 2 VLQV--DIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 57.3 bits (138), Expect = 4e-12
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKD 67
S ++ PE +KL C G+ P + WK + G + N + S +
Sbjct: 8 HSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYE 60
Score = 49.6 bits (118), Expect = 3e-09
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEIIIKEGNTM 61
L V+VPP + A G L C G P TW + DG + +T
Sbjct: 101 KLIVLVPPSKPTV--NIPSSATIGNRAVLTCSEQDGSPPSEYTWFK-DGIVMPTNPKSTR 157
Query: 62 VPKSKDIF 69
+
Sbjct: 158 AFSNSSYV 165
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 58.0 bits (140), Expect = 5e-12
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGN 59
++ PP I ++S+ D + I + C+AKG P P W R + + I +
Sbjct: 11 NELTQPPTIT-KQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFNIAKDP 64
Score = 54.5 bits (131), Expect = 8e-11
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGN 59
+ V P L+E +++ G +LVC+A G P+P + W +G+ + N
Sbjct: 305 ISVRVKAAPYWLDE--PKNLILAPGEDGRLVCRANGNPKPTVQWMV-NGEPLQSAPPN 359
Score = 50.3 bits (120), Expect = 3e-09
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
P + + ++S M G + L C A G P P I W ++ G
Sbjct: 220 PSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGD 262
Score = 43.3 bits (102), Expect = 6e-07
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEI 53
L V P +E+ ++ EG + L C G P P I W + I
Sbjct: 110 LQVSKSPLW-PKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPI 159
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 56.0 bits (135), Expect = 8e-12
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTM 61
+L V V P I+ + + E G + LVC A+G P P ITWKR EG+
Sbjct: 88 AFLQVFVQPHIIQLK---NETTYENGQVTLVCDAEGEPIPEITWKR-AVDGFTFTEGDKS 143
Query: 62 VP 63
+
Sbjct: 144 LD 145
Score = 53.3 bits (128), Expect = 1e-10
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
P I + S + A G + C+A G P P I+W R +G+ I
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGKLI 45
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 57.0 bits (137), Expect = 8e-12
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
L V+ P + + + PE +C+A G P P + ++ +
Sbjct: 177 ELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 227
Score = 29.3 bits (65), Expect = 0.071
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
+ + P + EG + + C+A PR +T Q
Sbjct: 93 VTIYSFPAP--NVILTKPEVSEGTEVTVKCEAH--PRAKVTLNGVPAQ 136
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 56.1 bits (135), Expect = 9e-12
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKD 67
+ SD+ PE +IKL C G+ P + WK G + N+ +
Sbjct: 5 YTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYA 57
Score = 48.0 bits (114), Expect = 1e-08
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEIIIKEGNTM 61
+L V+VPP S G L C G P +W + DG ++ +
Sbjct: 98 HLTVLVPPSKPTI--SVPSSVTIGNRAVLTCSEHDGSPPSEYSWFK-DGISMLTADAKKT 154
Query: 62 VPKSKDIF 69
F
Sbjct: 155 RAFMNSSF 162
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 56.9 bits (137), Expect = 1e-11
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKS 65
P L +E ++ I ++ CKA G P P I W R DG + G +
Sbjct: 2 KGPVFL-KEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD 58
Score = 53.0 bits (127), Expect = 2e-10
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGN 59
L V P + G C+ G P ++W + DG+ I E
Sbjct: 300 TVLTVTAPLSAKIDPP--TQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHSESV 354
Score = 44.9 bits (106), Expect = 2e-07
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 4 LDVVVPPDILNEE-----SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
V+ P + + TI L+C A+G+P P W +
Sbjct: 200 RLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEG 252
Score = 37.6 bits (87), Expect = 7e-05
Identities = 6/54 (11%), Positives = 16/54 (29%), Gaps = 5/54 (9%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGY---PRPHITWKREDGQEII 54
+ VV E + G + + C + ++W ++ +
Sbjct: 98 VRAVVAQYY--EADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYF 149
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 55.5 bits (134), Expect = 1e-11
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
L V + P I ++ EG L C G P+P ++W + + ++
Sbjct: 95 LQVKMKPKITRPPI--NVKIIEGLKAVLPCTTMGNPKPSVSWIK-GDSALRENSRIAVLE 151
Score = 50.1 bits (120), Expect = 1e-09
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 5 DVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
+ P I + A +C + YP+P I+W R + I + + +
Sbjct: 3 KLPKAPVITTPLE--TVDALVEEVATFMCAVESYPQPEISWTR-NKILIKLFDTRYSI 57
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 56.3 bits (136), Expect = 2e-11
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
L V PP + + +G + L C+ +G P ++W + D +E+
Sbjct: 186 SLKVKEPPVFRKK--PHPVETLKGADVHLECELQGTPPFQVSWHK-DKREL 233
Score = 51.7 bits (124), Expect = 7e-10
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
L V PP + ++ + + + CK G P + W + D EI
Sbjct: 91 AQLGVQEPPRFI-KKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEI 140
Score = 50.9 bits (122), Expect = 1e-09
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+ PP + + G + C G ITW + D +EI
Sbjct: 3 MAPPFF--DLKPVSVDLALGESGTFKCHVTGTAPIKITWAK-DNREI 46
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 55.8 bits (134), Expect = 2e-11
Identities = 15/64 (23%), Positives = 26/64 (40%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKS 65
V V ++ P +L C+A+GYP+ + W D Q + K T +
Sbjct: 111 VKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKRE 170
Query: 66 KDIF 69
+ +F
Sbjct: 171 EKLF 174
Score = 30.0 bits (67), Expect = 0.036
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 13/59 (22%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-----HITWKREDGQEIIIKEGN 59
V VP D+ + G + + CK + + W+ ED I G
Sbjct: 4 VTVPKDL--------YVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGE 54
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 55.7 bits (134), Expect = 3e-11
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
P L +E ++ I ++ CKA G P P I W R DG + G +
Sbjct: 33 DADQKGPVFL-KEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS 91
Query: 64 KS 65
Sbjct: 92 SD 93
Score = 51.5 bits (123), Expect = 1e-09
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG 50
L+V VPP + E + D +G K+ CKA G+P+P +TWK+ G
Sbjct: 707 TPLNVYVPPRWILEPT--DKAFAQGSDAKVECKADGFPKPQVTWKKAVG 753
Score = 49.9 bits (119), Expect = 3e-09
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG 58
L V P + G C+ G P ++W + DG+ I E
Sbjct: 336 TVLTVTAPLSAKIDPP--TQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHSES 389
Score = 49.5 bits (118), Expect = 4e-09
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
L+V P I G T+ + C GYP I W+R D + +
Sbjct: 520 AKLNVYGLPYI---RQMEKKAIVAGETLIVTCPVAGYPIDSIVWER-DNRAL 567
Score = 49.5 bits (118), Expect = 5e-09
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
PP I ++ + G ++ L C A G P P I+W+ DG++I
Sbjct: 424 GGRFDPPVI--RQAFQEETMEPGPSVFLKCVAGGNPTPEISWEL-DGKKI 470
Score = 46.9 bits (111), Expect = 4e-08
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
P +++ T+ L+C A+GYP P W +
Sbjct: 244 SAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEG 288
Score = 46.1 bits (109), Expect = 7e-08
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEI 53
+ V+V P I+ + + A G + L C G P +I W DGQ I
Sbjct: 612 EVQVMVLPRII-PFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTL-DGQAI 661
Score = 36.1 bits (83), Expect = 2e-04
Identities = 6/54 (11%), Positives = 15/54 (27%), Gaps = 5/54 (9%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK---GYPRPHITWKREDGQEII 54
+ VV E + G + + C ++W ++ +
Sbjct: 133 VRAVVAQYY--EADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYF 184
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 54.0 bits (130), Expect = 5e-11
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGN 59
L++ S +G ++VC+ P P ++W +E+ N
Sbjct: 91 LEIYQKLTFREVVS--PQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEVTTISDN 143
Score = 44.4 bits (105), Expect = 2e-07
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+ S S + G + C A G P + G++I
Sbjct: 2 LLQVT--ISLSKVELSVGESKFFTCTAIGEPESIDWYNP-QGEKI 43
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 54.8 bits (132), Expect = 6e-11
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
L V PP + + +G + L C+ +G P ++W + D +E+
Sbjct: 378 SLKVKEPPVFRKKPH--PVETLKGADVHLECELQGTPPFQVSWHK-DKREL 425
Score = 54.0 bits (130), Expect = 1e-10
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTM 61
G + + PP + + SDI G ++L +G + W + D EI+ + N
Sbjct: 470 GSITLKAPPRFVKK--LSDISTVVGEEVQLQATIEGAEPISVAWFK-DKGEIVRESDNIW 526
Query: 62 V 62
+
Sbjct: 527 I 527
Score = 49.8 bits (119), Expect = 3e-09
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTM 61
L V PP + ++ + + + CK G P + W + D EI M
Sbjct: 283 AQLGVQEPPRFI-KKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFRM 340
Query: 62 V 62
Sbjct: 341 S 341
Score = 49.8 bits (119), Expect = 4e-09
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
VPP + + G + C G ITW + D +EI
Sbjct: 196 VPPFF--DLKPVSVDLALGESGTFKCHVTGTAPIKITWAK-DNREI 238
Score = 49.4 bits (118), Expect = 4e-09
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTM 61
PP + E + A G I L CK G P I W + + ++ M
Sbjct: 5 PPYFI--EPLEHVEAAIGEPITLQCKVDGTPEIRIAWYK-EHTKLRSAPAYKM 54
Score = 45.2 bits (107), Expect = 2e-07
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTM 61
+PP D+ G + C+ G ++W + DG+ +
Sbjct: 100 LPPSF--ARKLKDVHETLGFPVAFECRINGSEPLQVSWYK-DGELLKDDANLQT 150
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 54.7 bits (131), Expect = 7e-11
Identities = 10/49 (20%), Positives = 15/49 (30%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
+ +V I SS D + + K YP+ TW
Sbjct: 318 LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS 366
Score = 45.8 bits (108), Expect = 9e-08
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 10/51 (19%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
L++ P +L E + C + GYP P TWK+ +
Sbjct: 409 TLNIRRKPQVL----------AEASASQASCFSDGYPLPSWTWKKCSDKSP 449
Score = 41.6 bits (97), Expect = 3e-06
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
+ + M LVC ++ P P + W D Q KE + V
Sbjct: 134 TVSIRNTLLYTLRRPYFRKM---ENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAV 190
Score = 41.2 bits (96), Expect = 4e-06
Identities = 4/48 (8%), Positives = 10/48 (20%), Gaps = 3/48 (6%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
L + ++ + +I L W +
Sbjct: 44 LRPQSSGTV---YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSS 88
Score = 37.8 bits (87), Expect = 6e-05
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRPHITWKREDGQEI 53
+D+ P + + G + + CKA +TW+ + + +
Sbjct: 224 IDLNQTPQT----TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL-ENKAL 269
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 54.1 bits (129), Expect = 1e-10
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
L V+ P + + + PE +C+A G P P + ++ +
Sbjct: 362 ELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 412
Score = 32.9 bits (74), Expect = 0.003
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
+ + P + EG + + C+A +PR +T Q
Sbjct: 278 VTIYSFPAP--NVILTKPEVSEGTEVTVKCEA--HPRAKVTLNGVPAQ 321
Score = 31.4 bits (70), Expect = 0.011
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 17 SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
S S ++ P GG++ + C + + ++ ++ GN
Sbjct: 5 SPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRK 50
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 54.0 bits (129), Expect = 1e-10
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
V P+I D+ E ++ L C A ++TW + Q + I G
Sbjct: 544 SFHVTRGPEI---TLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPT 600
Query: 63 PKSKDI 68
P K++
Sbjct: 601 PVCKNL 606
Score = 52.1 bits (124), Expect = 6e-10
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 3 YLDVVVPPDI-LNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI----IIKE 57
++ V P + S + A G +++ K GYP P I W + +G + IK
Sbjct: 321 FVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYK-NGIPLESNHTIKA 379
Query: 58 GNTMV 62
G+ +
Sbjct: 380 GHVLT 384
Score = 48.2 bits (114), Expect = 1e-08
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+ V P I + + G +I++ C A G P P I W + D + +
Sbjct: 660 TVLERVAPTIT--GNLENQTTSIGESIEVSCTASGNPPPQIMWFK-DNETL 707
Score = 45.1 bits (106), Expect = 2e-07
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 4 LDVVVPPDILNEESSSDI-MAPEGGTIKLVCKAKGYPRP-HITWKREDGQEIIIKEGNTM 61
L V VPP I + S + G T L C P P HI W + +E + +
Sbjct: 415 LVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAV 474
Query: 62 VP 63
Sbjct: 475 SV 476
Score = 40.9 bits (95), Expect = 6e-06
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 3 YLDVVVPPDILN--EESSSDIMAPEGGTIKLVCKAKGYPRPHITWK 46
Y+ VVV I + S I G + L C A+ I +
Sbjct: 214 YIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN 259
Score = 32.4 bits (73), Expect = 0.005
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 3 YLDVVVPPDI---LNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGN 59
Y+ P I ++ I + T+ + C +++ ++ + +GN
Sbjct: 117 YVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGN 175
Query: 60 TMVPKSKDIF 69
+ SK F
Sbjct: 176 RISWDSKKGF 185
Score = 29.3 bits (65), Expect = 0.057
Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 4/43 (9%)
Query: 7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRED 49
+ P + + T+++ C +G W
Sbjct: 29 LDLPRLS--IQKDILTIKANTTLQITC--RGQRDLDWLWPNNQ 67
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 50.9 bits (122), Expect = 1e-10
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNT 60
+ ++ E GGT+ L C+ P P I W + DG + +
Sbjct: 7 GLEEVQLVVE--PEGGAVAPGGTVTLTCEVPAQPSPQIHWMK-DGVPLPLPPSPV 58
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 51.9 bits (124), Expect = 3e-10
Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 9/53 (16%)
Query: 1 MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+ + D +G ++ L ++ P + + G+ I
Sbjct: 96 LLVFGLTANSDT---------HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI 139
Score = 45.0 bits (106), Expect = 1e-07
Identities = 9/48 (18%), Positives = 21/48 (43%)
Query: 21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKDI 68
++ +G T++L C A WK + +I+ +G+ + +
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKL 52
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 52.9 bits (127), Expect = 3e-10
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54
G + + PD L+ +D A G ++ C A G PRP + W R DGQ +
Sbjct: 287 GRIIIHAQPDWLDV--ITDTEADIGSDLRWSCVASGKPRPAVRWLR-DGQPLA 336
Score = 49.1 bits (117), Expect = 6e-09
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54
P I + +D A G + L C A G P P I W++ DG +
Sbjct: 203 RQYAPSIK-AKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS 250
Score = 44.5 bits (105), Expect = 3e-07
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 9 PPDILNE-ESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
P + + + L C+A+ P WK +G E+ + +
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKM-NGTELKMGPDSRYR 57
Score = 43.7 bits (103), Expect = 5e-07
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 2/60 (3%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEIIIKEGNTMV 62
L + + E + EG + C YP W + I +G V
Sbjct: 95 LRFGFLQEF-SAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV 153
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 52.8 bits (126), Expect = 3e-10
Identities = 10/49 (20%), Positives = 15/49 (30%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
+ +V I SS D + + K YP+ TW
Sbjct: 318 LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS 366
Score = 44.3 bits (104), Expect = 3e-07
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
+ + M LVC ++ P P + W D Q KE + V
Sbjct: 134 TVSIRNTLLYTLRRPYFRKM---ENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAV 190
Query: 63 PKSKDIF 69
K ++
Sbjct: 191 VKKEEKV 197
Score = 44.3 bits (104), Expect = 4e-07
Identities = 4/48 (8%), Positives = 10/48 (20%), Gaps = 3/48 (6%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
L + ++ + +I L W +
Sbjct: 44 LRPQSSGTV---YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSS 88
Score = 40.0 bits (93), Expect = 9e-06
Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEI 53
+ + + + + G + + CKA +TW+ + + +
Sbjct: 224 IDLNQTP--QTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL-ENKAL 269
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 52.5 bits (126), Expect = 3e-10
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
PP + + D + GG VC+A G P+P +TW + G+++ + T+
Sbjct: 3 GEEPPRFI--KEPKDQIGVSGGVASFVCQATGDPKPRVTWNK-KGKKVNSQRFETIE 56
Score = 49.8 bits (119), Expect = 3e-09
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
V P GG + + C A G P P++ W + +++
Sbjct: 204 VAPRFS--ILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQ-GAEDL 246
Score = 46.7 bits (111), Expect = 4e-08
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 2 GYLDVVVPPDILNEESS-----SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIK 56
L V+ + + + + T ++C A G P P ITW + D +
Sbjct: 94 AKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPVDPS 152
Query: 57 EGNTMV 62
N +
Sbjct: 153 ASNGRI 158
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 52.0 bits (125), Expect = 3e-10
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 4 LDVVVPPDILNE-ESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
L + P G T++L G P P +TW + +
Sbjct: 95 LLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH-GQKLL 144
Score = 47.4 bits (113), Expect = 1e-08
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
P I + D+ G +L C+ G P P I W R G+E+
Sbjct: 7 APGIR--KEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYR-FGKEL 48
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 52.0 bits (125), Expect = 3e-10
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 3 YLDVVVPPDIL---NEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54
L+V VP I E + A G + + G P P ITW++ I
Sbjct: 93 SLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLID 146
Score = 48.9 bits (117), Expect = 5e-09
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKD 67
+ P E ++ LVCK G+P+P + W R G+EII + + K
Sbjct: 3 MAPHFKEELR--NLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIADGLKYRIQEFKG 59
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 49.8 bits (119), Expect = 4e-10
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI 53
L P ++ E G + +C AK P + W R ++
Sbjct: 3 LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL 53
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 52.1 bits (125), Expect = 5e-10
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54
G L P+ + +DI ++ CKA G P+P W + +G ++
Sbjct: 288 GQLTFYAQPNWVQI--INDIHVAMEESVFWECKANGRPKPTYRWLK-NGDPLL 337
Score = 52.1 bits (125), Expect = 6e-10
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
P I + + A +G T+KL C A G P P I W+R DG+ I
Sbjct: 201 GEYEPKIE-VQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPI 247
Score = 48.7 bits (116), Expect = 8e-09
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 9 PPDILNE-ESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
P + E + E +KL C+ KG P+PHI WK +G ++ I
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL-NGTDVDIGMDFRYS 58
Score = 41.7 bits (98), Expect = 2e-06
Identities = 6/61 (9%), Positives = 12/61 (19%), Gaps = 2/61 (3%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEIIIKEGNTMV 62
L + + S + G + L+C W +
Sbjct: 96 LQFAYLENF-KTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQ 154
Query: 63 P 63
Sbjct: 155 E 155
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 49.7 bits (119), Expect = 5e-10
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 9 PPDILNEE--SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
P N E P T+K C A G P P + W + +G+E
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEF 49
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 52.2 bits (125), Expect = 5e-10
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
L VV P ++ I+ +G + + CK G P P++ W + + +
Sbjct: 302 KLTVVSAPKYE-QKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPL 350
Score = 51.8 bits (124), Expect = 6e-10
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEIIIKEGNTMV 62
L V P + ++ ++++ E L C +G + +WK+ DG+ +E N +
Sbjct: 1 LPVDKYPVL--KDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKK-DGKSYNWQEHNAAL 57
Score = 46.8 bits (111), Expect = 4e-08
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
P S D+MA G + C P + + + +G+++
Sbjct: 209 YKGEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFK-NGKDV 253
Score = 38.4 bits (89), Expect = 3e-05
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCK-AKGYPRPHITWKREDGQ 51
+ + EG +L C YP+P ITWK+
Sbjct: 95 FRKTYLIAS--PAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSG 141
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 49.6 bits (119), Expect = 5e-10
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+ V P D EG L C +G P P ITW +GQ I
Sbjct: 6 SGMEVAPSFS--SVLKDCAVIEGQDFVLQCSVRGTPVPRITWLL-NGQPI 52
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 49.7 bits (119), Expect = 5e-10
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKS 65
PP IL + ++ GT L CKA G P P I+W + +G ++ + +
Sbjct: 8 PPIIL--QGPANQTLAVDGTALLKCKATGDPLPVISWLK-EGFTFPGRDPRATIQEQ 61
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 49.6 bits (119), Expect = 6e-10
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSK 66
+ PP + + ++ EG ++ K G P P ++W +G+ + + + M+ K
Sbjct: 3 MGPPRFI--QVPENMSIDEGRFCRMDFKVSGLPAPDVSWYL-NGRTVQSDDLHKMIVSEK 59
Query: 67 DIF 69
+
Sbjct: 60 GLH 62
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 51.4 bits (123), Expect = 6e-10
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
PP + D GG +C+A G PRP I W + G+++
Sbjct: 3 GETPPRFT--RTPVDQTGVSGGVASFICQATGDPRPKIVWNK-KGKKV 47
Score = 50.2 bits (120), Expect = 2e-09
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 3 YLDVVVPPDILNEESS-----SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57
L V+ I + + T ++C A G P P ITW + D +
Sbjct: 95 RLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPVDTSN 153
Query: 58 GNTMVPKSKD 67
N + + +
Sbjct: 154 NNGRIKQLRS 163
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 49.2 bits (118), Expect = 7e-10
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
PP S D EG + + + +G P+P ++W R + Q +
Sbjct: 4 APPTFK--VSLMDQSVREGQDVIMSIRVQGEPKPVVSWLR-NRQPV 46
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 50.9 bits (122), Expect = 8e-10
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 5 DVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54
PP+ + + +G ++L + G P P + + R DG EI
Sbjct: 99 AETAPPNFVQRLQ--SMTVRQGSQVRLQVRVTGIPTPVVKFYR-DGAEIQ 145
Score = 47.4 bits (113), Expect = 2e-08
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
P ++ EG T G+P P ++W R DGQ I
Sbjct: 2 TTQAPTFTQPLQ--SVVVLEGSTATFEAHISGFPVPEVSWFR-DGQVI 46
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 49.2 bits (118), Expect = 9e-10
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+ P I+ D K KA G PRP W + DG+ I
Sbjct: 3 ISSKPVIVTG--LQDTTVSSDSVAKFAVKATGEPRPTAIWTK-DGKAI 47
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 49.3 bits (118), Expect = 9e-10
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+ IL + EG + + C G P P +TW R GQ +
Sbjct: 11 TTLAARIL--TKPRSMTVYEGESARFSCDTDGEPVPTVTWLR-KGQVL 55
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 50.6 bits (121), Expect = 9e-10
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEIIIKEGNTM 61
+L V P E D+ P +L C+A G P P I W R +I +
Sbjct: 92 WLTVEGVPFFTVE--PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWR-GTTKIGGPAPSPS 148
Query: 62 V 62
V
Sbjct: 149 V 149
Score = 49.4 bits (118), Expect = 2e-09
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
++ + + +G +KL C +G P I W + DG +
Sbjct: 2 GLKLM--GAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVK-DGAVV 43
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1, isoform 2; hydrolase, immunoglobulin domain,
nucleus, protease; 2.80A {Homo sapiens}
Length = 218
Score = 51.0 bits (122), Expect = 9e-10
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+VP + G +KL C+A G+P W + +EI
Sbjct: 11 SSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFK-MNKEI 59
Score = 48.0 bits (114), Expect = 1e-08
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 14/71 (19%)
Query: 3 YLDVVVPPDILNEESS-------------SDIMAPEGGTIKLVCKAKGYPRPHITWKRED 49
LDV P+ + G T+ L C A G P PH W + +
Sbjct: 97 QLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK-N 155
Query: 50 GQEIIIKEGNT 60
+ +
Sbjct: 156 ELPLTHETKKL 166
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 51.3 bits (123), Expect = 9e-10
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57
YLD+ P + + + EG I + C K P I W+R D + K
Sbjct: 93 MYLDIEYAPKF--ISNQTIYYSWEGNPINISCDVKSNPPASIHWRR-DKLVLPAKN 145
Score = 45.2 bits (107), Expect = 2e-07
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGN 59
+ E G + LVC A+G P P ITWKR EG+
Sbjct: 9 NETTYENGQVTLVCDAEGEPIPEITWKR-AVDGFTFTEGD 47
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 50.6 bits (121), Expect = 1e-09
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
PP+I+ + + GG C A+G P P I W++ +G+++ + V
Sbjct: 3 GAHPPEIIRK--PQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQSRYTV 56
Score = 50.2 bits (120), Expect = 2e-09
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
P I + G T+ + CKA G P P+I W + + ++ + +
Sbjct: 110 FPVITQGPG--TRVIEVGHTVLMTCKAIGNPTPNIYWIK-NQTKVDMSNPRYSLK 161
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 48.9 bits (117), Expect = 1e-09
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI------IIKE 57
+ V P I + + G +I++ C A G P P I W + D + + ++K+
Sbjct: 5 VLERVAPTIT--GNLENQTTSIGESIEVSCTASGNPPPQIMWFK-DNETLVEDSGIVLKD 61
Query: 58 GNT 60
GN
Sbjct: 62 GNR 64
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 49.3 bits (118), Expect = 1e-09
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+ P + EG ++KL C+ P P + WKR + + +
Sbjct: 10 HEHKRAPMFI--YKPQSKKVLEGDSVKLECQISAIPPPKLFWKR-NNEMV 56
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 48.9 bits (117), Expect = 1e-09
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
P L ++ D+ EG ++ CK G P P ++W+ DG+ +
Sbjct: 8 FRPHFL--QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQL-DGKPV 50
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 49.1 bits (117), Expect = 1e-09
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQ 51
L V PP I S+ A G ++ C + P P I W ++
Sbjct: 8 TLTVNGPPII---SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENV 54
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 50.3 bits (120), Expect = 2e-09
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRPHITWKREDGQEIIIKEGNTM 61
+L V P N + +++ E L C ++ R G+ ++ +
Sbjct: 82 HLYVKDPARPWNVLAQ-EVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSF 140
Query: 62 VPK 64
P
Sbjct: 141 SPW 143
Score = 43.4 bits (102), Expect = 7e-07
Identities = 7/52 (13%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57
+ PP + + +++ G ++VC A + + + ++ I +
Sbjct: 183 IPGPPALTLVPA--ELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQ 232
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance,
cell adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 49.9 bits (119), Expect = 2e-09
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNT 60
P I+ + D++ + L CK +G P P I W + DG+ + E +
Sbjct: 9 SPRIIEHPT--DLVVKKNEPATLNCKVEGKPEPTIEWFK-DGEPVSTNEKKS 57
Score = 44.9 bits (106), Expect = 2e-07
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 3 YLDV-VVPPDILNEESSSDIMAPEGGTIKLVC-KAKGYPRPHITWKREDGQEIIIKEGNT 60
L + V+ D E D +G T L C KG P P + W + DG + + +
Sbjct: 101 SLQIAVLRDDFRVE--PKDTRVAKGETALLECGPPKGIPEPTLIWIK-DGVPLDDLKAMS 157
Query: 61 MVPKSK 66
S+
Sbjct: 158 FGASSR 163
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 49.9 bits (119), Expect = 2e-09
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG 50
P DI+ D+ A G + L C A G P P I W++
Sbjct: 112 YPADIV--VQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLE 152
Score = 35.2 bits (81), Expect = 5e-04
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRP-HITWKREDGQEIIIKEGN 59
G + P E ++ EG + L+C +P W + + I
Sbjct: 1 GPGSGYLDPFP--PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLL-NEFPVFITMDK 57
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 48.9 bits (116), Expect = 2e-09
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
+ ++ GG+++L C+A G P P I W E
Sbjct: 21 MAGFV--QAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQG 61
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 49.9 bits (119), Expect = 2e-09
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 4 LDVVVPPDILNEE--SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+ P N E P T+K C A G P P + W + +G+E
Sbjct: 10 SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEF 60
Score = 48.0 bits (114), Expect = 1e-08
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 3 YLDVVVPPD---ILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
+LDVV IL ++ GG ++ VCK +PHI W + +
Sbjct: 107 HLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 158
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 50.1 bits (119), Expect = 3e-09
Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 3 YLDVVVPPDILNE-ESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEIIIKEGNT 60
L+VV I ++ + +G + L+ + + +P+P H W + K +
Sbjct: 304 TLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIY-MNRTFTDKWEDY 362
Query: 61 MVPKSKD 67
+++
Sbjct: 363 PKSENES 369
Score = 48.5 bits (115), Expect = 9e-09
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 8/51 (15%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+ V P+I + L C A G+P P I W G E
Sbjct: 406 NVYVNTKPEI--------LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQ 448
Score = 38.9 bits (90), Expect = 3e-05
Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
Y+ V P + + E + C + + K G+ +
Sbjct: 108 YVFVRDPAKLFLV--DRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPL 156
Score = 36.6 bits (84), Expect = 2e-04
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQ 51
P + S + + EG + C K + TWKRE+ Q
Sbjct: 210 AVPVVSV--SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQ 252
Score = 33.9 bits (77), Expect = 0.001
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
PP I SD++ G I+L+C G + W E E + N +
Sbjct: 31 PGEPSPPSI--HPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDETNENKQNEWI 83
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 50.0 bits (119), Expect = 3e-09
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
LDV+ PD S D G + L C + P P +W+ +G
Sbjct: 552 TLDVLYGPDTP-IISPPDSSYLSGANLNLSCHSASNPSPQYSWRI-NGIPQ 600
Score = 48.4 bits (115), Expect = 1e-08
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
L+V+ PD S S G + L C A P +W DG I + +
Sbjct: 374 ILNVLYGPDDPTI-SPSYTYYRPGVNLSLSCHAASNPPAQYSWLI-DGN--IQQHTQELF 429
Score = 45.3 bits (107), Expect = 1e-07
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
L+V+ PD S + G + L C A P +W +G
Sbjct: 197 LNVLYGPDAP-TISPLNTSYRSGENLNLSCHAASNPPAQYSWFV-NGTFQ 244
Score = 40.3 bits (94), Expect = 7e-06
Identities = 6/65 (9%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 3 YLDVVVPPDI--LNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNT 60
+ V ++ + S++ + + C+ + ++ W +GQ + +
Sbjct: 457 VKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV--NGQSLPVSPRLQ 514
Query: 61 MVPKS 65
+ +
Sbjct: 515 LSNGN 519
Score = 39.9 bits (93), Expect = 1e-05
Identities = 6/64 (9%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
Query: 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTM 61
G V + S++ + + C+ + W + Q + + +
Sbjct: 102 GQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWV-NNQSLPVSPRLQL 159
Query: 62 VPKS 65
+
Sbjct: 160 SNGN 163
Score = 38.4 bits (89), Expect = 3e-05
Identities = 6/48 (12%), Positives = 15/48 (31%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG 50
+ V P S++ + + L C+ + ++ W
Sbjct: 281 TITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQS 328
Score = 33.8 bits (77), Expect = 0.001
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRED 49
S+ EG + L+ +W + +
Sbjct: 6 STPFNVAEGKEVLLLVHNLPQHLFGYSWYKGE 37
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 49.7 bits (118), Expect = 3e-09
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEII 54
L V+V P D G KL C+ K G W++ + +
Sbjct: 115 LLTVLVKPSG--TRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTM 165
Score = 33.9 bits (77), Expect = 0.001
Identities = 11/52 (21%), Positives = 13/52 (25%), Gaps = 12/52 (23%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP----HITWKREDGQ 51
L + P I +G T L CK P I W
Sbjct: 1 LSITTPEQ--------RIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSD 44
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 47.7 bits (114), Expect = 3e-09
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKD 67
+PP I S DI EG + + C G P P +TW G++I +E ++ D
Sbjct: 4 IPPKIEALPS--DISIDEGKVLTVACAFTGEPTPEVTWSC-GGRKIHSQEQGRFHIENTD 60
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 49.4 bits (118), Expect = 4e-09
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 2 GYLDVVVPPDIL---NEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG 58
L+V VP I E + A G + + G P P ITW++ I
Sbjct: 92 ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLIDNNGH 150
Query: 59 NTMV 62
++
Sbjct: 151 YQVI 154
Score = 48.6 bits (116), Expect = 9e-09
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
+ P E ++ LVCK G+P+P + W R G+EII +
Sbjct: 3 MAPHFKEE--LRNLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIADGLKYRI 54
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 49.0 bits (117), Expect = 4e-09
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
PP I+ S D++ +G L CKA+G P P I W + G+ +
Sbjct: 8 FPPRIVEHPS--DLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERV 50
Score = 45.6 bits (108), Expect = 7e-08
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 3 YLDV-VVPPDILNEESSSDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEIIIKEGNT 60
L+V ++ D ++ SD+M G + C+ +G+P P I+WK+ DG + K+
Sbjct: 104 SLEVAILRDDF--RQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKK-DGSPLDDKDERI 160
Query: 61 MVP 63
+
Sbjct: 161 TIR 163
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 49.2 bits (117), Expect = 5e-09
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 3 YLDVVVPPD---ILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRED 49
LDV+ IL ++ A G ++ CK +PHI W +
Sbjct: 211 TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHV 260
Score = 49.2 bits (117), Expect = 6e-09
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 2 GYLDVVVPPDILNEE--SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
P E + P T++ C A G P P I+W + +G+E
Sbjct: 112 DTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREF 164
Score = 43.1 bits (101), Expect = 8e-07
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI 53
P + ++ G ++L C G P W + DG +
Sbjct: 7 VPGPEPGQQE-QLVFGSGDAVELSCPPPGGGPMGPTVWVK-DGTGL 50
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 47.5 bits (113), Expect = 6e-09
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
PP I + + GT L C A G P P I W++ DG + ++
Sbjct: 8 PPVIR--QGPVNQTVAVDGTFVLSCVATGSPVPTILWRK-DGVLVSTQDSRIKQ 58
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 48.4 bits (115), Expect = 7e-09
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEI 53
Y+ + P L E D L C+A+G P P + W + D +
Sbjct: 100 YVGLEGLPYFLEE--PEDRTVAANTPFNLSCQAQGPPEPVDLLWLQ-DAVPL 148
Score = 36.8 bits (85), Expect = 1e-04
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI 53
+ +I G T L C+ + P + W R DGQ +
Sbjct: 2 ESPFVGNPG--NITGARGLTGTLRCQLQVQGEPPEVHWLR-DGQIL 44
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo
sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 46.6 bits (111), Expect = 8e-09
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 5 DVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
D PP L + G +L C G P P + W++ GQ++
Sbjct: 9 DQGSPPCFLRF--PRPVRVVSGAEAELKCVVLGEPPPVVVWEK-GGQQL 54
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 48.4 bits (114), Expect = 1e-08
Identities = 7/48 (14%), Positives = 17/48 (35%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDG 50
+ P + ++ ++ + EG I + C ++TW
Sbjct: 128 KVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPT 175
Score = 38.7 bits (89), Expect = 3e-05
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 15 EESSSDIMAPEGGTIKLVCK---AKGYPRPHITWKREDGQE 52
+ +++ GGT++L C A P I+W + +
Sbjct: 6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPD 46
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 48.6 bits (115), Expect = 1e-08
Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 9/53 (16%)
Query: 1 MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+ + D +G ++ L ++ P + + G+ I
Sbjct: 95 LLVFGLTANSDT---------HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI 138
Score = 44.0 bits (103), Expect = 4e-07
Identities = 9/48 (18%), Positives = 21/48 (43%)
Query: 21 IMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKDI 68
++ +G T++L C A WK + +I+ +G+ + +
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKL 51
Score = 26.3 bits (57), Expect = 0.85
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 21 IMAPEGGTIKLVCKAKGYPRPHITWK-REDGQEIIIKEGNTMV 62
+M L C+ G P + + + +E + + V
Sbjct: 291 VMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAV 333
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 46.6 bits (111), Expect = 1e-08
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 5 DVVVPPDI-LNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
++ PP I L + G + LV +G PRP + W + G +
Sbjct: 17 EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK-GGAPL 65
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 46.6 bits (111), Expect = 1e-08
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKD 67
EG + C+ G P+P I W + DG++I K + + + D
Sbjct: 16 KHYKIFEGMPVTFTCRVAGNPKPKIYWFK-DGKQISPKSDHYTIQRDLD 63
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding,
immunoglobulin domain, kinase, membrane, nucleotid
binding; HET: NAG; 2.10A {Homo sapiens}
Length = 241
Score = 48.0 bits (114), Expect = 1e-08
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 7 VVPPDILNEE--SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
P E + P T++ C A G P P I+W + +G+E
Sbjct: 9 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREF 56
Score = 46.1 bits (109), Expect = 7e-08
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 3 YLDVVVPPD---ILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
LDV+ IL ++ A G ++ CK +PHI W +
Sbjct: 103 TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEV 154
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 47.8 bits (113), Expect = 1e-08
Identities = 7/51 (13%), Positives = 14/51 (27%), Gaps = 2/51 (3%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
Y+ V P + + E + C + DG+ +
Sbjct: 85 YVFVRDPAKLFLV--GLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSL 133
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 45.4 bits (108), Expect = 2e-08
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
I E +S +M G T+ L C A G P PH W + + +
Sbjct: 3 KLQICVEPTSQKLM--PGSTLVLQCVAVGSPIPHYQWFK-NELPL 44
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 46.8 bits (111), Expect = 3e-08
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKDIF 69
+ EG + L C G P P ++W + + + + + + ++
Sbjct: 125 DVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALAQTDHCNLKFEAGRTA 174
Score = 31.4 bits (71), Expect = 0.010
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 11/44 (25%)
Query: 20 DIMAPEGGTIKLVCKAKGY----------PRPHITWKREDGQEI 53
+A +K+ A+G + W +G I
Sbjct: 2 SSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH-NGSAI 44
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 44.6 bits (106), Expect = 4e-08
Identities = 13/46 (28%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+ P IL +S I G T L G P P TW
Sbjct: 1 LKPKIL--TASRKIKIKAGFTHNLEVDFIGAPDPTATWTV-GDSGA 43
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 45.6 bits (108), Expect = 4e-08
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
V P D+ EG + CK +GYP P + W + D +
Sbjct: 36 EKPHVKPYFTKT--ILDMEVVEGSAARFDCKVEGYPDPEVMWFK-DDNPV 82
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 44.6 bits (106), Expect = 4e-08
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+G + G P P W + +G +I
Sbjct: 13 QSQTVGQGSDAHFRVRVVGKPDPECEWYK-NGVKI 46
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 46.7 bits (110), Expect = 5e-08
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQ 51
L+V P++ E + +KL CKA P W +G
Sbjct: 225 TLNVQYEPEVTIE-GFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGS 273
Score = 37.4 bits (86), Expect = 1e-04
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 4 LDVVVPPDILNEESSSDIMA---PEGGTIKLVCK-AKGYPRPHITWKREDGQEIIIKE 57
L V+ P E + + + A + + C A G P ++W+ E +E
Sbjct: 125 LTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQE 182
Score = 30.1 bits (67), Expect = 0.032
Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP----HITWKREDGQ 51
P ++ + + + G + L C +TW++
Sbjct: 14 PSQVV--QVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNG 58
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 46.7 bits (110), Expect = 5e-08
Identities = 5/37 (13%), Positives = 12/37 (32%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
+ + G + L C+ +G W + +
Sbjct: 162 KVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELE 198
Score = 33.6 bits (76), Expect = 0.002
Identities = 10/51 (19%), Positives = 16/51 (31%)
Query: 1 MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
+G +V V ++ S A E + G P P + W
Sbjct: 236 VGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSV 286
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 44.6 bits (106), Expect = 5e-08
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
G + P I P G + + + P + W +G E+
Sbjct: 1 GPFTLDHAPRIT--LRMRSHRVPCGQNTRFILNVQSKPTAEVKWYH-NGVEL 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 46.2 bits (110), Expect = 5e-08
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 5 DVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+ + + + EG T++ VC+A G P P I W +
Sbjct: 379 YFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLV 427
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 46.0 bits (109), Expect = 5e-08
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+ P + + + EG + + C+ YP I+W R DGQ +
Sbjct: 14 GSHMYAPKL---QGPVAVYTWEGNQVNITCEVFAYPSATISWFR-DGQLL 59
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 46.1 bits (109), Expect = 7e-08
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRPHITWKREDGQEII 54
+L V P N + ++ EG L C + ++ RE G++++
Sbjct: 82 HLYVKDPAHSWNLLAQ-EVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVL 133
Score = 42.2 bits (99), Expect = 1e-06
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57
PP I E S ++ G ++VC A + ++ I
Sbjct: 183 HPEPPQIKLEPS--KLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPL 232
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 45.5 bits (107), Expect = 1e-07
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQ--EIIIKEGN 59
L V PP++ + + L C A+ P P W G + +G
Sbjct: 210 NLTVYYPPEV-SISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGA 268
Query: 60 TMV 62
++
Sbjct: 269 QLL 271
Score = 44.3 bits (104), Expect = 3e-07
Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 4/52 (7%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI 53
+L V+ P + C + G P ITW D +
Sbjct: 111 WLRVLAKPQN--TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHS-DLGGM 159
Score = 30.8 bits (69), Expect = 0.018
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 12/65 (18%)
Query: 5 DVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-----HITWKREDGQEIIIKEGN 59
DVVV + + G ++ L C + +TW R +
Sbjct: 1 DVVVQAP-------TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQ 53
Query: 60 TMVPK 64
T P
Sbjct: 54 TQGPS 58
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 45.3 bits (107), Expect = 1e-07
Identities = 8/66 (12%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
+ + + EG + L C G P P ++W + + + + + +
Sbjct: 217 AEKNRARVL--GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK-NEKALASDDHCNLKF 273
Query: 64 KSKDIF 69
++
Sbjct: 274 EAGRTA 279
Score = 42.2 bits (99), Expect = 2e-06
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRPHITWKREDGQEI 53
+D P + S + L CK HI W + D +EI
Sbjct: 2 IDPFTGPHFVEYLS---WEVTGECNVLLKCKVANIKKETHIVWYK-DEREI 48
Score = 34.5 bits (79), Expect = 8e-04
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 13/60 (21%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG----------YPRPHITWKREDGQEI 53
L +++ E +A +K+ A+G + W +G I
Sbjct: 93 LVDEAFKELMMEVC--KKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH-NGSAI 149
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 44.7 bits (105), Expect = 2e-07
Identities = 10/58 (17%), Positives = 20/58 (34%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNT 60
Y+ + I ++ + +G I L+C G + W + + E T
Sbjct: 173 YVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVT 230
Score = 37.8 bits (87), Expect = 6e-05
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 3 YLDVVVP--PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54
Y+ V P + N+ I E I + C+ P+ +T + G +
Sbjct: 85 YIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVAL 137
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 42.7 bits (101), Expect = 3e-07
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
P I+ + D G +++L K G TW + ++I
Sbjct: 7 GPQII--QFPEDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQI 48
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 43.5 bits (102), Expect = 5e-07
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 17 SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
+ + P G ++L C+A+GYP ++W+
Sbjct: 109 DTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVP 143
Score = 33.1 bits (75), Expect = 0.003
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 8/49 (16%)
Query: 5 DVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
V P ++ G ++ L C + R Q++
Sbjct: 4 TVTAPKEV--------YTVDVGSSVSLECDFDRRECTELEGIRASLQKV 44
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 43.2 bits (101), Expect = 8e-07
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 5 DVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+ P I++ + + + G I+L+C G WK +G I
Sbjct: 204 NKPTRPVIVSPANET-MEVDLGSQIQLICNVTGQLSDIAYWKW-NGSVI 250
Score = 35.9 bits (82), Expect = 3e-04
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 7/51 (13%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVC------KAKGYPRPHITWKREDGQEI 53
P N ++ P G LVC K + P + W +D + +
Sbjct: 101 PNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQW-YKDCKPL 150
Score = 31.6 bits (71), Expect = 0.011
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYP-RPHITWKREDGQEIIIKEGNTMVPKSKD 67
E +++ C + ITW ++D + + E + + + K+
Sbjct: 10 EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE 62
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 42.7 bits (100), Expect = 9e-07
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQE 52
+ + PP + +SS I EG T LVCK++ P W + E
Sbjct: 78 IQLHGPPRVKAVKSSEHIN--EGETAMLVCKSESVPPVTDWAWYKITDSE 125
Score = 31.2 bits (70), Expect = 0.013
Identities = 6/33 (18%), Positives = 8/33 (24%), Gaps = 3/33 (9%)
Query: 23 APEGGTIKLVCKAKGYPRP--HITWKREDGQEI 53
G I L C W + G +
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLK-GGVVL 41
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 42.8 bits (100), Expect = 9e-07
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 2 GYLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEI 53
V + L + D+ + G I L C++ G YP+P I W G+ I
Sbjct: 109 EKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENI 161
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor,
receptor tyrosine kinase, 3D-domain swapping,
transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 41.7 bits (98), Expect = 9e-07
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
L V PP +++ E + +G P P + W +GQ +
Sbjct: 3 LTVYYPPRVVSLEEPE-----LRLEHCIEFVVRGNPPPTLHWLH-NGQPL 46
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 42.3 bits (99), Expect = 1e-06
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEIIIKEGNTMVPKS 65
+ S SD P +++C G +P PH++W + I + P++
Sbjct: 102 LSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPET 161
Query: 66 K 66
+
Sbjct: 162 E 162
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1;
immunoglobulin superfamily, integrin-binding, cell
adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3
b.1.1.4 PDB: 1ij9_A 1vsc_A
Length = 202
Score = 42.5 bits (99), Expect = 1e-06
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
S +A G ++ L C G P +W+ +
Sbjct: 6 TPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS 41
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 40.8 bits (96), Expect = 2e-06
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 19 SDIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEI 53
+ EGG +K VCK + Y + +TW +++
Sbjct: 9 MHAVGEEGGHVKYVCKIENYDQSTQVTWYF-GVRQL 43
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 42.4 bits (99), Expect = 2e-06
Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 6/55 (10%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVC-----KAKGYPRPHITWKREDGQEI 53
L V D S + + LVC + I W + D +
Sbjct: 113 LRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK-DSLLL 166
Score = 38.9 bits (90), Expect = 2e-05
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKA---KGYPRPHITWKREDGQEI 53
P I++ I A G + + CK G P + W + I
Sbjct: 225 TIPVIISP--LKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHI 271
Score = 35.0 bits (80), Expect = 6e-04
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 7/56 (12%)
Query: 19 SDIMAPEGGTIKLVCK-------AKGYPRPHITWKREDGQEIIIKEGNTMVPKSKD 67
EG + L C A PR ++TW + D + E T +
Sbjct: 26 KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG 81
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 40.7 bits (95), Expect = 2e-06
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57
+ I EG T+ L C + W G I + E
Sbjct: 6 NHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNE 47
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 40.5 bits (95), Expect = 2e-06
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
D+ EG + C+ + W D + E N +
Sbjct: 21 EDVDVQEGSSATFRCRISPANYEPVHWFL-DKTPLHANELNEID 63
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 40.1 bits (94), Expect = 3e-06
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
V P I ES + KG P+P + W +G +
Sbjct: 1 VHFAPTITFLES-----PTSDHHWCIPFTVKGNPKPALQWFY-NGAIL 42
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 40.4 bits (94), Expect = 4e-06
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 19 SDIMAPEGGTIKLVCKAKGYP---RPHITWKREDGQEIIIKEG 58
G I + K K +P I W + ++ K G
Sbjct: 15 QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAG 57
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 39.7 bits (93), Expect = 4e-06
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+ G ++L C+ + I W R DG ++
Sbjct: 11 ESFLVHPGDLLQLRCRLRDDV-QSINWLR-DGVQL 43
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 40.9 bits (95), Expect = 4e-06
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 4 LDVVVPPD---ILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI 53
L+V P+ + + + +M + C ++ G P P ITW R +GQ +
Sbjct: 110 LNVFAKPEATEVSPNKGTLSVME-DSAQEIATCNSRNGNPAPKITWYR-NGQRL 161
Score = 27.8 bits (61), Expect = 0.22
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 10/48 (20%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDG 50
+ + VPP + G ++ L C G + + W D
Sbjct: 2 VRLSVPPLVE---------VMRGKSVILDCTPTGTHDHYMLEWFLTDR 40
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 40.8 bits (95), Expect = 4e-06
Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 3/48 (6%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDG 50
L V+ P + C + G P ITW + G
Sbjct: 111 LRVLAKPQNT--AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLG 156
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 39.4 bits (92), Expect = 5e-06
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 5 DVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+ P + ++ G ++L C+ + I W R DG ++
Sbjct: 5 EQAQPWGV--PVEVESLLVHPGDLLQLRCRLRDDV-QSINWLR-DGVQL 49
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle,
IGI, thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 40.1 bits (93), Expect = 5e-06
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 8 VPPDI---LNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
PP I I+ G ++L G P P + W++ Q
Sbjct: 12 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQ 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 40.5 bits (95), Expect = 7e-06
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
P I+ ++ D+ EG +L C+ P + W +G +
Sbjct: 352 APFIM--DAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVL 392
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein
3; structural genomics, joint center for struct
genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 39.3 bits (91), Expect = 8e-06
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 2/51 (3%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54
D P I + A G + C A +T+ E +
Sbjct: 5 CDDFPXPQITVQ--PETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEAL 53
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 39.8 bits (92), Expect = 1e-05
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCK-AKGYPRPHITWKREDGQEIII 55
+ PP + + ++ + I L C +ITW + + QE+II
Sbjct: 123 SHIRKPPSCI--PETYELGTHDKYGIDLYCGILYAKHYNNITWYK-NNQELII 172
Score = 36.3 bits (83), Expect = 2e-04
Identities = 13/71 (18%), Positives = 18/71 (25%), Gaps = 5/71 (7%)
Query: 4 LDVVVPPD-ILNEESSSDIMAPEGGTIKLVCKAKGYPRP----HITWKREDGQEIIIKEG 58
L V+ D I G + C A I W+ G I + G
Sbjct: 220 LTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFG 279
Query: 59 NTMVPKSKDIF 69
+ S
Sbjct: 280 VYSILTSSGGI 290
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 38.2 bits (89), Expect = 2e-05
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 9/61 (14%)
Query: 7 VVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEGN 59
V I+ + A + L C+ P + W + DG+E+ + KE
Sbjct: 9 DVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTK-DGEEVVESPALLLQKEDT 66
Query: 60 T 60
Sbjct: 67 V 67
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 37.5 bits (87), Expect = 3e-05
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57
+ ++ EGGT L C+ + W Q + +
Sbjct: 13 TQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDD 52
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 38.4 bits (89), Expect = 3e-05
Identities = 6/46 (13%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+ P +E ++ ++ C P+ +W + D
Sbjct: 2 IDPFT--KEVVVNVDDDGVISLNFECDK-MTPKSEFSWSK-DYVST 43
Score = 35.7 bits (82), Expect = 4e-04
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 20 DIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEII 54
+ L CK + HI W + D +EI
Sbjct: 230 SWEVTGECNVLLKCKVANIKKETHIVWYK-DEREIS 264
Score = 31.9 bits (72), Expect = 0.007
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 5 DVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
+ P + E + +I+ +G + K + + + +EI
Sbjct: 103 EHKFPTVPVKSELAVEILE-KGQVRFWMQAEKLSGNAKVNYIF-NEKEI 149
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 38.7 bits (90), Expect = 3e-05
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQ 51
EG + C+ P +TW ++D +
Sbjct: 490 YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRE 522
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 37.5 bits (87), Expect = 7e-05
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 7 VVPPDILN--EESSSDIMAPEGGTIKLVCKAKGYPRPHITW 45
+ D N E S A G T+ + C K +
Sbjct: 240 IFSLDFFNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKVWV 280
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 37.7 bits (86), Expect = 7e-05
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPHI--TWKREDGQEIIIKEGNT 60
L V PP + ++ AP +L+C YP + W+ G ++
Sbjct: 286 LAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEG 345
Query: 61 MVPKS 65
S
Sbjct: 346 QRWLS 350
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 36.2 bits (84), Expect = 1e-04
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
P IL+ + + + L C+ TW + DGQ++
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYK-DGQKV 50
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 35.8 bits (83), Expect = 1e-04
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 11/59 (18%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEGNT 60
P E+ D+ EGG L C P + W + + +EG
Sbjct: 8 PVRFQ--EALKDLEVLEGGAATLRCVLSSVAAP-VKWCY-GNNVLRPGDKYSLRQEGAM 62
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 35.8 bits (83), Expect = 1e-04
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 11/59 (18%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEGNT 60
E +++ E GT CK +P +TW++ E+ +EG T
Sbjct: 8 ANCFTEE--LTNLQVEEKGTAVFTCKT-EHPAATVTWRK-GLLELRASGKHQPSQEGLT 62
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 35.8 bits (83), Expect = 1e-04
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEG 58
VV + + + ++ A G + L C+ + +TW + DG+++ + G
Sbjct: 9 VVFAKE---QPAHREVQAEAGASATLSCEVAQ-AQTEVTWYK-DGKKLSSSSKVRVEAVG 63
Query: 59 NT 60
T
Sbjct: 64 CT 65
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 35.7 bits (83), Expect = 2e-04
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 11/59 (18%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEGNT 60
P I+ D G ++L C+ P + W + D + I ++ EG
Sbjct: 8 PAAIIKPLE--DQWVAPGEDVELRCELSRAGTP-VHWLK-DRKAIRKSQKYDVVCEGTM 62
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 36.3 bits (84), Expect = 2e-04
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI 53
+L V+ +L + + EG TI L C + P +T+ + +G+
Sbjct: 80 HLTVLFEWLVL---QTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQ-NGKSQ 127
Score = 29.4 bits (66), Expect = 0.060
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQEIIIKEGNTMVPK 64
PP + + I + ++ L C+ P I W +G I + K
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFH-NGNLIPTHTQPSYRFK 57
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 36.5 bits (83), Expect = 2e-04
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHIT-WKREDGQE 52
V + S + + G ++ ++C I W +G +
Sbjct: 328 VNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQ 373
Score = 31.1 bits (69), Expect = 0.015
Identities = 5/36 (13%), Positives = 9/36 (25%), Gaps = 1/36 (2%)
Query: 23 APEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEG 58
K +C+ + G+ EG
Sbjct: 243 PEVANVAKFLCRQSSGENCDVVVNT-LGKRAPAFEG 277
Score = 27.3 bits (59), Expect = 0.33
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 19 SDIMAPEGGTIKLVC----KAKGYPRPHITWKREDGQEIIIKEG 58
++ A G T+K+ C K Y + W Q + ++
Sbjct: 450 GNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDE 493
Score = 27.3 bits (59), Expect = 0.38
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 19 SDIMAPEGGTIKLVCK---AKGYPRPHITWKREDGQEIII 55
++ + EG ++ + C W R+ + I
Sbjct: 8 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCI 47
Score = 24.2 bits (51), Expect = 5.0
Identities = 5/41 (12%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 17 SSSDIMAPEGGTIKLVCKAKGYPRPHIT-WKREDGQEIIIK 56
+ G T+ + C K ++ G ++
Sbjct: 118 DTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLV 158
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 35.4 bits (82), Expect = 2e-04
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 9/49 (18%)
Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEGNT 60
+ G T + P H WK GQ + II++G
Sbjct: 13 YGVEVFVGETAHFEIEL-SEPDVHGQWKL-KGQPLAASPDCEIIEDGKK 59
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 35.0 bits (80), Expect = 3e-04
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 19 SDIMAPEGGTIKLVCKAKGYP---RPHITWKREDGQEIIIKEGNTMVPKSKD 67
D GG+I + G P + W + ++ K G +
Sbjct: 12 QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 36.0 bits (82), Expect = 3e-04
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 5/65 (7%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKA----KGYPRPHITWKREDGQEIIIKEGNTM 61
VPP I + G + + C R + W DG++ +
Sbjct: 221 NAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTI-DGKKPDDITIDVT 279
Query: 62 VPKSK 66
+ +S
Sbjct: 280 INESI 284
Score = 31.8 bits (71), Expect = 0.010
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 4 LDVVVPPDILNEESS--SDIMAPEGGTIKLVC-----KAKGYPRPHITWKREDGQEIIIK 56
L+VV N + E G ++ C +P ITW + I+
Sbjct: 111 LEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYK---IQ 167
Query: 57 EGNTMVPKSK 66
N ++P+
Sbjct: 168 NFNNVIPEGM 177
Score = 27.1 bits (59), Expect = 0.39
Identities = 6/61 (9%), Positives = 16/61 (26%), Gaps = 11/61 (18%)
Query: 16 ESSSDIMAPEGGTIKLVC-----------KAKGYPRPHITWKREDGQEIIIKEGNTMVPK 64
++ I E ++ C + W + + N +P+
Sbjct: 12 DTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPE 71
Query: 65 S 65
+
Sbjct: 72 N 72
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 34.7 bits (80), Expect = 3e-04
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 12/59 (20%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEGNT 60
P + A EG T L C+ + WK+ + + + ++G
Sbjct: 8 PARFTQD--LKTKEASEGATATLQCELS--KVAPVEWKK-GPETLRDGGRYSLKQDGTR 61
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein;
1.85A {Homo sapiens}
Length = 207
Score = 35.7 bits (82), Expect = 3e-04
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 19 SDIMAPEGGTIKLVCKA-KGYPRPHITWKREDGQEI 53
+ E G ++ +A K + + + +EI
Sbjct: 10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIF-NEKEI 44
Score = 34.1 bits (78), Expect = 0.001
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 20 DIMAPEGGTIKLVCKAKGYPRP-HITWKREDGQEIIIKE 57
+ L CK + HI W + D +EI + E
Sbjct: 125 SWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVDE 162
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 35.7 bits (82), Expect = 4e-04
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI 53
L++ +L S + EG + L C A ++ + R +G+
Sbjct: 77 QLEIHRGWLLL---QVSSRVFTEGEPLALRCHAWKDKLVYNVLYYR-NGKAF 124
Score = 30.7 bits (69), Expect = 0.017
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 1/51 (1%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYP-RPHITWKREDGQE 52
+ V +S EG + L C+ K RP +
Sbjct: 162 SVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMG 212
Score = 30.3 bits (68), Expect = 0.026
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 2/44 (4%)
Query: 17 SSSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQEIIIKEGN 59
+ + T+ L C+ P W +G +
Sbjct: 7 QPPWVSVFQEETVTLHCEVLHLPGSSSTQWFL-NGTATQTSTPS 49
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 34.7 bits (80), Expect = 4e-04
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEGNT 60
+GG ++ V + P+ + W + +GQEI +G
Sbjct: 16 PAYQVDKGGRVRFVVEL-ADPKLEVKWYK-NGQEIRPSTKYIFEHKGCQ 62
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR,
VEGF receptor, cancer, immune system-transfer complex;
HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 34.7 bits (79), Expect = 4e-04
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 7/45 (15%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRE 48
DVV+ P S I G + L C A+ I + E
Sbjct: 8 YDVVLSP-------SHGIELSVGEKLVLNCTARTELNVGIDFNWE 45
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 34.2 bits (79), Expect = 4e-04
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
P I+ D G +++ + + W + +G E+
Sbjct: 8 PVLIV--TPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMK-NGVEL 48
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 34.6 bits (80), Expect = 5e-04
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 3 YLDVV-VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
L V +P E + A EG T L C+ + W + + +
Sbjct: 12 MLTVRALPIKFT--EGLRNEEATEGATAVLRCELSK--MAPVEWWK-GHETL 58
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 34.2 bits (79), Expect = 5e-04
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKE 57
D A G ++L C+ ++ W + +G+EII
Sbjct: 15 EDTTAYCGERVELECEVSE-DDANVKWFK-NGEEIIPGP 51
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo
sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A*
1fp5_A 1f6a_B 1g84_A
Length = 323
Score = 35.0 bits (80), Expect = 6e-04
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 17 SSSDIMAPEGGTIKLVCKAKGY-PRPH-ITWKREDGQEI 53
SS D TI+L+C GY P ITW DGQ +
Sbjct: 15 SSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLE-DGQVM 52
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 33.9 bits (78), Expect = 6e-04
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 9/49 (18%)
Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEGNT 60
+ G + + + W+R G +I + EG
Sbjct: 16 RSVEVAAGSPAVFEAETER-AGVKVRWQR-GGSDISASNKYGLATEGTR 62
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 34.5 bits (79), Expect = 7e-04
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI 53
L+V + +L + + E I L C + +T+ + +G++
Sbjct: 83 QLEVHIGWLLL---QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQ-NGKDR 130
Score = 26.0 bits (57), Expect = 0.81
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 17 SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
E ++ L C+ P + T + I
Sbjct: 13 EPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLI 49
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 34.5 bits (79), Expect = 8e-04
Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 8/65 (12%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVP 63
L + S ++ L C+ P + + DG+ + + +
Sbjct: 100 LKIQERV-------SKPKISWTCINTTLTCEVMNGTDPELNLYQ-DGKHLKLSQRVITHK 151
Query: 64 KSKDI 68
+ +
Sbjct: 152 WTTSL 156
Score = 29.1 bits (65), Expect = 0.065
Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 17 SSSDIMAPEGGTIKLVCK--AKGYPRPHITWKREDGQEIIIKEGN 59
++ + G I L I W++ ++ I +
Sbjct: 5 NALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRK 49
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 33.1 bits (76), Expect = 0.001
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 9/49 (18%)
Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEGNT 60
+D+ C+ + W + +G E+ I G
Sbjct: 16 ADLTVKAAEQAVFKCEVSD-EKVTGKWYK-NGVEVRPSKRITISHVGRF 62
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 33.1 bits (76), Expect = 0.002
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 10/49 (20%)
Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI-------IIKEGNT 60
+D G I L C+ W + +G + ++++G
Sbjct: 15 TDQTVNLGKEICLKCEISENIPG--KWTK-NGLPVQESDRLKVVQKGRI 60
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 33.7 bits (76), Expect = 0.002
Identities = 6/49 (12%), Positives = 14/49 (28%), Gaps = 5/49 (10%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCK---AKGYPRPHITWKREDGQ 51
P + SS + G ++ + C + + W +
Sbjct: 2 SQGLPGLT--VSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDK 48
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 33.6 bits (76), Expect = 0.002
Identities = 8/60 (13%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 10 PDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKDIF 69
+ ++ I + T+ + C +++ ++ + +GN + SK F
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGF 66
Score = 33.6 bits (76), Expect = 0.002
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 3 YLDVVVPPDI--LNEESSSDIMAPEGGTIKLVCKAKGYP--RPHITWKREDGQ 51
Y+ VVV I + S I G + L C A+ W+ +
Sbjct: 95 YIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSK 147
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 33.2 bits (75), Expect = 0.002
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 20 DIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIII 55
D GGT+ L C+ K + + W Q +
Sbjct: 47 DETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYF 82
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 32.9 bits (75), Expect = 0.003
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEI 53
L+V + +L + + E I L C + +T+ + +G+
Sbjct: 83 QLEVHIGWLLL---QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQ-NGKGR 130
Score = 25.6 bits (56), Expect = 1.4
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 25 EGGTIKLVCKAKGYPRPHITWKREDGQEI 53
E ++ L C+ P T + I
Sbjct: 21 EKDSVTLKCQGAYSPEDQSTQWFHNESLI 49
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 32.2 bits (73), Expect = 0.005
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEIIIKEGN 59
YL+V +L +S + EG + L C + + + + DG+ + N
Sbjct: 80 YLEVFSDWLLL---QASAEVVMEGQPLFLRCHGWRNWDVYKVIYYK-DGEALKYWYEN 133
Score = 27.6 bits (61), Expect = 0.28
Identities = 7/47 (14%), Positives = 12/47 (25%), Gaps = 2/47 (4%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPH-ITWKREDGQEI 53
VP + +G + L C + W +G
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFH-NGSLS 46
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 32.4 bits (73), Expect = 0.006
Identities = 4/42 (9%), Positives = 8/42 (19%)
Query: 24 PEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKS 65
G + + K P + W +
Sbjct: 89 SPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTF 130
Score = 27.8 bits (61), Expect = 0.23
Identities = 4/31 (12%), Positives = 7/31 (22%)
Query: 19 SDIMAPEGGTIKLVCKAKGYPRPHITWKRED 49
++ G C A G +
Sbjct: 172 QNVEVNAGQFATFQCSAIGRTVAGDRLWLQG 202
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 31.5 bits (71), Expect = 0.008
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 6/45 (13%)
Query: 9 PPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
P + ++ E + G P P + W +G +
Sbjct: 3 MPASVQLHTAV-----EMHHWCIPFSVDGQPAPSLRWLF-NGSVL 41
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 31.4 bits (70), Expect = 0.012
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 22 MAPEGGTIKLVCKAKGYPRPHITWKREDGQEI 53
E G++ L C +ITW + DG+ I
Sbjct: 14 DYQEDGSVLLTC---DAEAKNITWFK-DGKMI 41
Score = 28.7 bits (63), Expect = 0.12
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 25 EGGTIKLVCKAKGYPRPHITWKREDGQEI 53
G T+ L C YP I W+ + + I
Sbjct: 127 SGTTVILTCPQ--YPGSEILWQH-NDKNI 152
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 31.0 bits (70), Expect = 0.014
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 4/40 (10%)
Query: 17 SSSDIMAPEGGTIKLVCKAKGYPR--PHITWKRE-DGQEI 53
D + T K+ C + P + + D E+
Sbjct: 237 KPKDTLLI-TVTPKVTCVVVDISKDDPEVQFSWFVDNVEV 275
Score = 28.3 bits (63), Expect = 0.13
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYP--RPHITWKRE 48
ES +++ P G ++K+ CKA GY I W ++
Sbjct: 5 ESGAELARP-GASVKMSCKASGYTFTTYTIHWIKQ 38
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 30.3 bits (68), Expect = 0.024
Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 25 EGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKD 67
E L C+ + + + + TM + +
Sbjct: 109 ECSNATLTCEVLEGTDVELKLYQ-GKEHLRSLRQKTMSYQWTN 150
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 30.2 bits (67), Expect = 0.026
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYP---RPHITWKREDGQEIIIKEG 58
+ + G +V K G +P I W + E+ K G
Sbjct: 17 KKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSG 62
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 29.8 bits (67), Expect = 0.038
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGYPRPHITW 45
E + ++ G + ++ C +I W
Sbjct: 6 EGRTKSVIRQTGSSAEITCDLAEGSTGYIHW 36
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell
adhesion protein, immunoglobulin fold, I-SET fold, cell
adhesion glycoprotein; 1.9A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Length = 210
Score = 29.5 bits (65), Expect = 0.050
Identities = 6/38 (15%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQ 51
E + G + +L C+ + W+ D
Sbjct: 11 EPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTS 48
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked
with A synthetic...; single-chain FV, monoclonal
antibody, immunoglobulin; 1.30A {Mus musculus} PDB:
3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Length = 250
Score = 28.8 bits (65), Expect = 0.081
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 3 YLDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITW-KREDGQ--EIIIKEGN 59
Y D+V L + +SS + G + + C+A R ++ W +++ +++I +
Sbjct: 2 YKDIV-----LIQSTSSLSASL-GDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTS 55
Query: 60 TMVPKSKDIF 69
+ F
Sbjct: 56 RLQSGVPSRF 65
Score = 26.8 bits (60), Expect = 0.39
Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+S +++ P G ++K+ CK GY
Sbjct: 137 QSGPELVKP-GASVKISCKDSGY 158
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2;
immunoglobulin, beta-sandwich, mceacam1A -
immunoglobulin FO spike NTD - galectin-like
beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB:
1l6z_A*
Length = 208
Score = 28.9 bits (64), Expect = 0.090
Identities = 3/32 (9%), Positives = 8/32 (25%)
Query: 18 SSDIMAPEGGTIKLVCKAKGYPRPHITWKRED 49
+ E + L+ W + +
Sbjct: 6 AVPPQVAEDNNVLLLVHNLPLALGAFAWYKGN 37
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 28.7 bits (65), Expect = 0.11
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 26 GGTIKLVCKAKGY-PRP-HITWKREDG 50
G +VC + P+ ++ WK +
Sbjct: 131 SGGASVVCFLNNFYPKDINVKWKIDGS 157
Score = 27.6 bits (62), Expect = 0.23
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 26 GGTIKLVCKAKGY-PRP-HITWK 46
+ L C KGY P P +TW
Sbjct: 358 ASMVTLGCLVKGYFPEPVTVTWN 380
Score = 24.9 bits (55), Expect = 2.2
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ P GG++KL C A G+
Sbjct: 224 ESGGGLVKP-GGSLKLSCTASGF 245
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 28.5 bits (63), Expect = 0.13
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKS 65
V V P I N + + + + K VC + + ++ I + + +S
Sbjct: 110 VSVFPYIQNPDPAVYQLRDSKSSDKSVCLFTDFD-SQTNVSQSKDSDVYITDKCVLDMRS 168
Query: 66 KD 67
D
Sbjct: 169 MD 170
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1;
signal regulatory protein alpha, immunoglobulin
superfamily, phosphoprotein; HET: NAG; 2.49A {Homo
sapiens}
Length = 327
Score = 28.4 bits (63), Expect = 0.13
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY-PRPHITWKREDGQ 51
+ + G + L C P I W R G
Sbjct: 8 QPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGP 44
Score = 28.4 bits (63), Expect = 0.15
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 25 EGGTIKLVCKAKGY-PRP-HITWKREDGQEI 53
T+ C++ G+ PR + W + +G E+
Sbjct: 131 PQHTVSFTCESHGFSPRDITLKWFK-NGNEL 160
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 28.3 bits (63), Expect = 0.14
Identities = 6/52 (11%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 5 DVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGY-PRPH-ITWKR-EDGQEI 53
+++ P + T ++ C + + DG E+
Sbjct: 243 ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEV 294
Score = 26.4 bits (58), Expect = 0.64
Identities = 8/23 (34%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+S +++ P G ++K+ C+A GY
Sbjct: 6 QSGAEVKKP-GASVKVSCQASGY 27
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune
system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A*
3uyp_A* 3uzv_B 1dzb_A
Length = 253
Score = 28.0 bits (63), Expect = 0.16
Identities = 7/23 (30%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+S ++++ P G +++L C A G+
Sbjct: 7 QSGAELVKP-GASVRLSCTASGF 28
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A
3chn_A 1r70_B 3cm9_A
Length = 475
Score = 28.0 bits (62), Expect = 0.17
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 13 LNEESSSDIMAPEGGTIKLVCKAKGY 38
L E+S +++ P G ++K+ CKA GY
Sbjct: 4 LLEQSGAEVKKP-GASVKVSCKASGY 28
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer,
SCFV, variable domain, immune system; 2.60A {Mus
musculus} SCOP: b.1.1.1 b.1.1.1
Length = 240
Score = 28.1 bits (63), Expect = 0.17
Identities = 8/23 (34%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+S ++++ P G ++KL C A G+
Sbjct: 125 QSGAELVEP-GASVKLSCTASGF 146
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin,
single-chain FV, anti-carcinoembryonic antigen; 2.4A
{Mus musculus} SCOP: b.1.1.1 b.1.1.1
Length = 282
Score = 27.7 bits (62), Expect = 0.20
Identities = 7/23 (30%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+S ++++ G ++KL C A G+
Sbjct: 32 QSGAELVRS-GTSVKLSCTASGF 53
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 27.6 bits (61), Expect = 0.21
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 6 VVVPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDG 50
+ V P+I N + + + + K VC + +++ ++
Sbjct: 108 LTVHPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSD 153
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22
protein, T cell receptor delta, immune system; HET: NAG
MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 230
Score = 27.6 bits (62), Expect = 0.23
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
E+ I P T ++ CK
Sbjct: 5 EQPEISISRPRDETAQISCKVFIE 28
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily,
butyrophilin, CD277, immune system; 3.52A {Mus
musculus}
Length = 254
Score = 27.7 bits (62), Expect = 0.23
Identities = 9/23 (39%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+S ++++ P G ++K+ CKA GY
Sbjct: 6 QSGAEVVRP-GTSVKVSCKASGY 27
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV,
immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Length = 264
Score = 27.7 bits (62), Expect = 0.23
Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+S +++ G ++K+ CKA GY
Sbjct: 144 QSGPEVVKT-GASVKISCKASGY 165
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system;
2.88A {Mus musculus}
Length = 291
Score = 27.7 bits (62), Expect = 0.24
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+S +++ P G ++K+ CKA GY
Sbjct: 28 QSGPELVKP-GASVKMSCKASGY 49
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 27.5 bits (60), Expect = 0.26
Identities = 8/55 (14%), Positives = 14/55 (25%), Gaps = 4/55 (7%)
Query: 1 MGYLDVVVPPDILNEESSSDIMAPEGGTIKLVC----KAKGYPRPHITWKREDGQ 51
L++ V I + G +L C + P +W
Sbjct: 113 QNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALS 167
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.27
Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 13/62 (20%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMVPKSKD 67
+PP IL + ++ P + L + + + + + N+ +P K
Sbjct: 319 LPPSILEDSLENNEGVP---SPMLSIS--NLTQEQV--------QDYVNKTNSHLPAGKQ 365
Query: 68 IF 69
+
Sbjct: 366 VE 367
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL;
2.80A {Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 27.1 bits (59), Expect = 0.27
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 19 SDIMAPEGGTIKLVCKAK-GYPRPHITWKREDGQEIIIKEGNTMVPKSKD 67
S+ G +L C K RPH+TW + +G + E K +
Sbjct: 19 SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEK 68
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120,
broadly neutralizing antibody, 3B3 single chain
variable fragment, immune system; 2.50A {Homo sapiens}
Length = 256
Score = 27.3 bits (61), Expect = 0.31
Identities = 8/23 (34%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+S +++ P G ++K+ C+A GY
Sbjct: 12 QSGAEVKKP-GASVKVSCQASGY 33
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody,
domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Length = 256
Score = 27.3 bits (61), Expect = 0.33
Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+S ++++ P G ++KL CKA GY
Sbjct: 6 QSGAELVKP-GASVKLSCKASGY 27
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 27.1 bits (60), Expect = 0.35
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 23 APEGGTIKLVCKAKGY-PRPH-ITW 45
+ GGT L C K Y P+P ++W
Sbjct: 231 STSGGTAALGCLVKDYFPQPVTVSW 255
Score = 26.7 bits (59), Expect = 0.50
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
Query: 26 GGTIKLVCKAKGY-PRPH-ITWKREDGQEI 53
LVC + P + WK DG +
Sbjct: 129 ANKATLVCLISDFYPGAVTVAWKA-DGSPV 157
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Length = 259
Score = 26.9 bits (60), Expect = 0.40
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++++ P G ++KL CKA GY
Sbjct: 137 ESGAELVKP-GASVKLSCKASGY 158
Score = 25.0 bits (55), Expect = 1.9
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 26 GGTIKLVCKAKGYPRPHITW-KREDGQ--EIIIKEGNTMVPKSKDIF 69
G TI + C A ++W ++ G +++I + + F
Sbjct: 16 GDTITITCHASQNINLWLSWYQQRPGNIPKLLIYRASNLHTGVPSRF 62
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen,
beta-turn, immune system; HET: NLE; NMR {Rattus
norvegicus} SCOP: b.1.1.1 b.1.1.1
Length = 257
Score = 27.0 bits (60), Expect = 0.41
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ P T+ L C G+
Sbjct: 6 ESGPGLVRP-SETLSLTCTVSGF 27
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F
membrane, envelope protein, fusion protein, membrane,
trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Length = 280
Score = 26.9 bits (60), Expect = 0.48
Identities = 3/13 (23%), Positives = 7/13 (53%)
Query: 26 GGTIKLVCKAKGY 38
G ++K+ C +
Sbjct: 15 GSSVKVSCTSSEV 27
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic
hypermutat protein-DNA complex, DNA mispair, cancer;
HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B*
2o8e_B* 2o8f_B*
Length = 1022
Score = 26.6 bits (59), Expect = 0.54
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 37 GYPRPHITWKREDGQEIIIKEG 58
RP I + + +K
Sbjct: 735 PMCRPVILLPEDTPPFLELKGS 756
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 215
Score = 26.3 bits (59), Expect = 0.56
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
EES ++ P G + L C G+
Sbjct: 4 EESGGRLVTP-GTPLTLACTVSGF 26
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 26.4 bits (58), Expect = 0.62
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ P GG++KL C G+
Sbjct: 6 ESGGGLVQP-GGSLKLSCATSGF 27
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 26.4 bits (58), Expect = 0.66
Identities = 9/23 (39%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+S ++++ P G ++K+ CKA GY
Sbjct: 6 QSGAEVVKP-GASVKISCKASGY 27
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 26.4 bits (57), Expect = 0.67
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 17 SSSDIMAPEGGTIKLVCKAKGYPRPHITWKREDGQEIIIKEGNTMV 62
S S ++ P GG++ + C + + ++ ++ GN
Sbjct: 5 SPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRK 50
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder,
immunoglobulin, immune system; HET: ENH; 1.90A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H*
1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H
1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Length = 219
Score = 25.9 bits (58), Expect = 0.84
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+S ++ P G T+K+ CKA GY
Sbjct: 6 QSGPELKKP-GETVKISCKASGY 27
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell
membrane, disulfide bond, glycoprotein, immunoglobulin
domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC;
3.60A {Homo sapiens}
Length = 589
Score = 26.1 bits (57), Expect = 0.92
Identities = 7/42 (16%), Positives = 10/42 (23%), Gaps = 8/42 (19%)
Query: 19 SDIMAPEGGTIKLVCKAK-------GYPRPHITWKREDGQEI 53
+ VC K +I WK + I
Sbjct: 11 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKT-NHFTI 51
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment,
anti-carbohydrate, anti-LPS, antibody, immunoglobulin,
KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B*
1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B*
2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B*
3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Length = 222
Score = 25.9 bits (58), Expect = 0.92
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ GG+++L C G+
Sbjct: 6 ESGGGLVQS-GGSLRLSCATSGF 27
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle
acetylcholine receptor...; immunoglobulin, immune
system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2
PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Length = 215
Score = 25.9 bits (58), Expect = 0.95
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ P T+ L C G+
Sbjct: 6 ESGPGLVQP-SQTLSLTCTVSGF 27
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure,
peptide-carbohydrate mimicry, VA design, immune system;
1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B*
1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Length = 220
Score = 25.9 bits (58), Expect = 0.97
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ P GG++KL C A G+
Sbjct: 6 ESGGGLVQP-GGSMKLSCVASGF 27
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 25.7 bits (57), Expect = 0.97
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 17 SSSDIMAPEGGTIKLVCKAKG-YPRPHITW 45
SS D G + L+C Y P + W
Sbjct: 6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFW 35
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme,
antigen, allergen, antimic bacteriolytic enzyme,
glycosidase, hydrolase; 1.20A {Mus musculus} PDB:
3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B
1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B
1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Length = 210
Score = 25.5 bits (57), Expect = 1.1
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ P T+ L C G
Sbjct: 6 ESGPSLVKP-SQTLSLTCSVTGD 27
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis,
esterolytic, FAB, immune system; 1.22A {Mus musculus}
SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H
1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C
1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B
1cfn_B ...
Length = 227
Score = 25.5 bits (57), Expect = 1.1
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+ ++++ P G ++KL CKA GY
Sbjct: 6 QPGAELVKP-GASVKLSCKASGY 27
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune
system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Length = 221
Score = 25.6 bits (57), Expect = 1.1
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ P GG++KL C A G+
Sbjct: 6 ESGGGLVQP-GGSLKLSCAASGF 27
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S
disease, immunotherapies, APP, immune system; 1.59A
{Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H
3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H
3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H*
1n5y_H* 1n6q_H* 1t03_H* ...
Length = 228
Score = 25.6 bits (57), Expect = 1.1
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ P T+ L C G+
Sbjct: 6 ESGPGLLKP-SQTLSLTCSFSGF 27
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA,
IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB:
3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Length = 257
Score = 25.7 bits (57), Expect = 1.1
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ P T+ L C G
Sbjct: 14 ESGPSLVKP-SQTLSLTCSVTGD 35
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 25.6 bits (56), Expect = 1.3
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 22 MAPEGGTIKLVCKAKGYPRPHITWKREDGQEII 54
+ G I L C + P + +E +
Sbjct: 116 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLP 148
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune
system-viral protein complex, envelope protein; HET:
NAG; 2.05A {Mus musculus}
Length = 261
Score = 25.6 bits (57), Expect = 1.3
Identities = 8/23 (34%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+ ++++ P G ++K+ CKA GY
Sbjct: 12 QPGAELVKP-GASVKMSCKASGY 33
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 25.7 bits (57), Expect = 1.3
Identities = 7/23 (30%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+S ++ P G +++L C A G+
Sbjct: 8 QSGGGVVQP-GKSLRLSCAASGF 29
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate
antibody, immune system; HET: MAN; 1.75A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M*
1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H*
3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H
2fl5_H*
Length = 225
Score = 25.5 bits (57), Expect = 1.3
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ GG++ L C +
Sbjct: 6 ESGGGLVKA-GGSLILSCGVSNF 27
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC;
1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H
2mcp_H*
Length = 220
Score = 25.5 bits (57), Expect = 1.3
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ P GG++KL C A G+
Sbjct: 6 ESGGGLVQP-GGSLKLSCAASGF 27
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I
domain, integrin, allosteric mobility, cell adhesi
immune system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 25.4 bits (55), Expect = 1.5
Identities = 4/30 (13%), Positives = 7/30 (23%)
Query: 17 SSSDIMAPEGGTIKLVCKAKGYPRPHITWK 46
GG++ L C +
Sbjct: 8 QPRVAFVERGGSLWLNCSTNCPRPERGGLE 37
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system
complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB:
3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H
3r06_B 3r08_H
Length = 253
Score = 25.2 bits (56), Expect = 1.5
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ P GG++KL C A G+
Sbjct: 6 ESGGGLVQP-GGSLKLSCAASGF 27
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the
antigen combining site superantigen FAB VH3
specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
PDB: 1hez_B 1adq_H
Length = 223
Score = 25.1 bits (56), Expect = 1.7
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ P G +++L C A G+
Sbjct: 6 ESGGGVVQP-GKSLRLSCAASGF 27
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain;
immunoglobulin, immune recognition, influenza A
hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H*
3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B
3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H*
1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Length = 232
Score = 25.2 bits (56), Expect = 1.7
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ P T+ L C G+
Sbjct: 6 ESGPALVKP-TQTLTLTCSFSGF 27
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related
protein; beta propeller, protein binding-immune system
complex; 1.90A {Homo sapiens} PDB: 1pkq_B
Length = 256
Score = 25.1 bits (56), Expect = 1.7
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ P GG+++L C A G+
Sbjct: 29 ESGGGLVQP-GGSLRLSCAASGF 50
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein
complex, enzyme- inhibitor complex, disease mutation,
glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Length = 257
Score = 25.2 bits (56), Expect = 1.9
Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+S ++ P GG+++L C A G+
Sbjct: 6 QSGGGLVKP-GGSLRLSCAASGF 27
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune
system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 229
Score = 25.0 bits (55), Expect = 2.0
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
E + ++ G L C KG
Sbjct: 6 PEHQTVPVSI-GVPATLRCSMKGE 28
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 24.9 bits (54), Expect = 2.1
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 8 VPPDILNEESSSDIMAPEGGTIKLVCKAKG-YPRPHITWKREDGQEIIIKEGNTM 61
V P I N + + + + K VC + +++ ++ I K M
Sbjct: 108 VHPYIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDM 162
>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA
MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B
Length = 120
Score = 24.9 bits (55), Expect = 2.1
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 15 EESSSDIMAPEGGTIKLVCKAKGY 38
++S + + P G ++K+ CKA GY
Sbjct: 5 QQSGTVVARP-GASVKMSCKASGY 27
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 24.8 bits (53), Expect = 2.2
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 26 GGTIKLVCKAK-GYPRPHITWKREDGQ 51
G K+ C K RP++TW + +G
Sbjct: 29 GELFKIECPVKYCVHRPNVTWCKHNGT 55
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo
sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E
3mfg_B 2ij0_E
Length = 246
Score = 24.8 bits (54), Expect = 2.2
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGYPRPHITW 45
S I G ++K+ C++ + + W
Sbjct: 7 HPSWVISKS-GTSVKIECRSLDFQATTMFW 35
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 24.8 bits (54), Expect = 2.2
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 10/46 (21%)
Query: 4 LDVVVPPDILNEESSSDIMAPEGGTIKLVCKAKGYPRPHITWKRED 49
++V P I E S+ L C+ + +
Sbjct: 103 YEMVSKPMIYWECSN----------ATLTCEVLEGTDVELKLYQGK 138
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing
antibody, immun anti-WEST NIle virus; 1.43A {Homo
sapiens} PDB: 3iyw_H 3qeh_A 3u0t_D 3c08_H 3lmj_H
3lqa_H* 3c09_H* 3pp4_H 3pp3_H 2jb5_H* 2jb6_B* 2eh7_H
2eh8_H 3jwd_H* 3jwo_H* 3t2n_H 3qot_H 3ma9_H 3nfs_H
3nfp_A ...
Length = 230
Score = 24.7 bits (55), Expect = 2.3
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+S +++ P G + K+ CKA GY
Sbjct: 6 QSGAEVRKP-GASTKVSCKASGY 27
>3iy0_H FAB 14, heavy domain; cryoem, neutralizing antibody, parvovirus,
canine, feline, FAB footprint, immune system; 12.50A
{Mus musculus}
Length = 120
Score = 24.5 bits (54), Expect = 2.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 26 GGTIKLVCKAKGY 38
GG +KL C A GY
Sbjct: 15 GGGVKLSCGASGY 27
>3ux9_B SCFV antibody; five helices, long loop connecting helix,
hydrophobic intera cytokine-immune system complex; 2.80A
{Homo sapiens}
Length = 256
Score = 24.9 bits (55), Expect = 2.3
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ P GG+++L C A G+
Sbjct: 140 ESGGGLVQP-GGSLRLSCAASGF 161
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune
system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Length = 263
Score = 24.5 bits (54), Expect = 2.6
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++AP ++ + C G+
Sbjct: 6 ESGPGLVAP-SQSLSITCTVSGF 27
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain;
human monoclonal antibody, FAB, third variable
antibody-antigen interaction; 1.80A {Homo sapiens} PDB:
3mls_H 3mlt_H 3mlu_H 3mlv_H
Length = 226
Score = 24.7 bits (55), Expect = 2.7
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ P G ++K+ CK+ GY
Sbjct: 6 ESGGEVKQP-GQSLKISCKSSGY 27
>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1
GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}
Length = 267
Score = 24.4 bits (54), Expect = 2.9
Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+S +++ P G ++K+ CKA G
Sbjct: 29 QSGAEVKKP-GSSVKVSCKASGN 50
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized
SCFV), SCFV, monovalent antibo antibody engineering,
immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Length = 276
Score = 24.6 bits (54), Expect = 3.0
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ P GG+++L C A G+
Sbjct: 140 ESGGGLVQP-GGSLRLSCAASGF 161
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen
complex, HIV inhibiting antibody; 1.89A {Mus musculus}
PDB: 1jp5_A
Length = 247
Score = 24.6 bits (54), Expect = 3.1
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
+S ++ P G T+K+ CKA Y
Sbjct: 133 QSGPELKKP-GETVKISCKATNY 154
>1xiw_D Immunoglobulin heavy chain variable region; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Mus musculus} SCOP:
b.1.1.1 PDB: 3iy3_B
Length = 122
Score = 24.1 bits (53), Expect = 3.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 26 GGTIKLVCKAKGY 38
G ++K+ CKA GY
Sbjct: 15 GASMKISCKASGY 27
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition,
immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A
{Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H*
3mme_H* 2qsc_H*
Length = 248
Score = 24.4 bits (54), Expect = 3.6
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ P G +++L C A G+
Sbjct: 5 ESGGGVVQP-GSSLRLSCAASGF 26
>2psb_A YERB protein; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG, unknown function; 2.10A {Bacillus subtilis} SCOP:
c.153.1.1
Length = 320
Score = 24.5 bits (52), Expect = 3.7
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 8/29 (27%)
Query: 42 HITWKRE--------DGQEIIIKEGNTMV 62
WK+ DG+ + G T +
Sbjct: 267 ETDWKQVNGRIVPVKDGKWLPFVPGKTWI 295
>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain;
immunoglobulin, immune system; 1.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B
Length = 121
Score = 24.0 bits (53), Expect = 4.0
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 26 GGTIKLVCKAKGY 38
G ++KL C A G+
Sbjct: 15 GASVKLSCTASGF 27
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H*
3tje_H* 3thm_H* 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H
3mlz_H 2ykl_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H 3hi1_H*
3uc0_H 3uaj_H 3q1s_H 3fn0_H ...
Length = 239
Score = 24.0 bits (53), Expect = 4.5
Identities = 6/23 (26%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 16 ESSSDIMAPEGGTIKLVCKAKGY 38
ES ++ T+ L C G
Sbjct: 6 ESGPTLVEA-SETLSLTCAVSGD 27
>3nn8_A Engineered SCFV, heavy chain; beta barrel, antibody fragment,
immunoglobulin, immune syste; 3.10A {Mus musculus}
Length = 122
Score = 23.6 bits (52), Expect = 5.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 26 GGTIKLVCKAKGY 38
G ++K+ CKA GY
Sbjct: 15 GASVKISCKASGY 27
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.138 0.414
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,135,382
Number of extensions: 55525
Number of successful extensions: 525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 365
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)