BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4609
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 231 bits (589), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 103/151 (68%), Positives = 124/151 (82%)
Query: 82 SNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSV 141
S +R+ +RDKLL+KEV E+E NLP TCK F +PN LH F + ++PDEGY++GGKF F
Sbjct: 8 STRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFET 67
Query: 142 SVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNS 201
VP+ YNM PPKVKCLTK+WHPNI E G+ICLSLLR++SIDG GWAPTR LKDV+WGLNS
Sbjct: 68 EVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNS 127
Query: 202 LFTDLLNFDDPLNIEAAEMYQKNKELFRERA 232
LFTDLLNFDDPLNIEAAE + ++KE FR +
Sbjct: 128 LFTDLLNFDDPLNIEAAEHHLRDKEDFRNKV 158
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 229 bits (583), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 102/150 (68%), Positives = 123/150 (82%)
Query: 83 NKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVS 142
+R+ +RDKLL+KEV E+E NLP TCK F +PN LH F + ++PDEGY++GGKF F
Sbjct: 9 TRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETE 68
Query: 143 VPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSL 202
VP+ YNM PPKVKCLTK+WHPNI E G+ICLSLLR++SIDG GWAPTR LKDV+WGLNSL
Sbjct: 69 VPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSL 128
Query: 203 FTDLLNFDDPLNIEAAEMYQKNKELFRERA 232
FTDLLNFDDPLNIEAAE + ++KE FR +
Sbjct: 129 FTDLLNFDDPLNIEAAEHHLRDKEDFRNKV 158
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 90/139 (64%), Gaps = 9/139 (6%)
Query: 95 KEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKV 154
K++ E+ NLP TC F++P+ L F +VI PDEG+++ GKF+FS V + Y PPKV
Sbjct: 13 KDINEL--NLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKV 70
Query: 155 KCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLN 214
KC T ++HPNI+ G++CL++LR++ W P + +I+GL LF + N +DPLN
Sbjct: 71 KCETXVYHPNIDLEGNVCLNILRED------WKPVLTINSIIYGLQYLFLE-PNPEDPLN 123
Query: 215 IEAAEMYQKNKELFRERAR 233
EAAE+ Q N+ LF + +
Sbjct: 124 KEAAEVLQNNRRLFEQNVQ 142
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 96/155 (61%), Gaps = 9/155 (5%)
Query: 79 DKSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFL 138
+K S+K+ + K++ E+ NLP TC F++P+ L F +VI PDEG+++ GKF+
Sbjct: 17 EKGSSKKASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFV 74
Query: 139 FSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWG 198
FS V + Y PPKVKC T ++HPNI+ G++ L++LR++ W P + +I+G
Sbjct: 75 FSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILRED------WKPVLTINSIIYG 128
Query: 199 LNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
L LF + N +DPLN EAAE+ Q N+ LF + +
Sbjct: 129 LQYLFLE-PNPEDPLNKEAAEVLQNNRRLFEQNVQ 162
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 14/153 (9%)
Query: 81 SSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFS 140
SS+KRI KE+ ++E++ P +C + H ++ P + + GG F S
Sbjct: 2 SSSKRI-------AKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLS 54
Query: 141 VSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLN 200
+ P +Y PPK+ TK++HPNIN NG+ICL +L+ W+P L V+ +
Sbjct: 55 IHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQ------WSPALTLSKVLLSIC 108
Query: 201 SLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
SL TD N DDPL E A +Y+ ++ + AR
Sbjct: 109 SLLTD-ANPDDPLVPEIAHIYKTDRPKYEATAR 140
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+Q+++++ P C + H ++ P + ++GG F ++ P +Y
Sbjct: 9 KRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFK 68
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV TK++HPNIN NG ICL +LR W+P + V+ + SL D N D
Sbjct: 69 PPKVAFTTKIYHPNINSNGSICLDILRSQ------WSPALTVSKVLLSICSLLCD-PNPD 121
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL + A +Y+ +KE + AR
Sbjct: 122 DPLVPDIAHIYKSDKEKYNRLAR 144
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+Q++ ++ P C + H ++ P E ++GG F ++ P +Y
Sbjct: 7 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 66
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG ICL +LR W+P + V+ + SL D N D
Sbjct: 67 PPKVAFTTRIYHPNINSNGSICLDILRSQ------WSPALTISKVLLSICSLLCD-PNPD 119
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ ++E + + AR
Sbjct: 120 DPLVPEIARIYKTDRERYNQLAR 142
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ +++++ P C + H ++ P + ++GG F +V P +Y
Sbjct: 22 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 81
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPK+ TK++HPNIN NG ICL +LR W+P + V+ + SL D N D
Sbjct: 82 PPKIAFTTKIYHPNINSNGSICLDILRSQ------WSPALTVSKVLLSICSLLCD-PNPD 134
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL + A++Y+ +KE + AR
Sbjct: 135 DPLVPDIAQIYKSDKEKYNRHAR 157
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ +++++ P C + H ++ P + ++GG F +V P +Y
Sbjct: 10 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPK+ TK++HPNIN NG ICL +LR W+P + V+ + SL D N D
Sbjct: 70 PPKIAFTTKIYHPNINSNGSICLDILRSQ------WSPALTVSKVLLSICSLLCD-PNPD 122
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL + A++Y+ +KE + AR
Sbjct: 123 DPLVPDIAQIYKSDKEKYNRHAR 145
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ +++++ P C + H ++ P + ++GG F +V P +Y
Sbjct: 6 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 65
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPK+ TK++HPNIN NG ICL +LR W+P + V+ + SL D N D
Sbjct: 66 PPKIAFTTKIYHPNINSNGSICLDILRSQ------WSPALTVSKVLLSICSLLCD-PNPD 118
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL + A++Y+ +KE + AR
Sbjct: 119 DPLVPDIAQIYKSDKEKYNRHAR 141
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 7/139 (5%)
Query: 95 KEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKV 154
KE++E++Q+ P C + H + PD+ ++GG F V P +Y P+V
Sbjct: 11 KELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRV 70
Query: 155 KCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLN 214
+TK++HPNIN+NG ICL +L+ W+P L V+ ++SL TD N DPL+
Sbjct: 71 TFMTKVYHPNINKNGVICLDILKDQ------WSPALTLSRVLLSISSLLTD-PNPSDPLD 123
Query: 215 IEAAEMYQKNKELFRERAR 233
E A + + NK+ F + AR
Sbjct: 124 PEVANVLRANKKQFEDTAR 142
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ ++ ++ P C + H ++ P++ ++GG F ++ P +Y
Sbjct: 14 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG ICL +LR W+P + V+ + SL D N D
Sbjct: 74 PPKVAFTTRIYHPNINSNGSICLDILRSQ------WSPALTISKVLLSICSLLCD-PNPD 126
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +YQ ++E + AR
Sbjct: 127 DPLVPEIARIYQTDREKYNRIAR 149
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ ++ ++ P C + H ++ P++ ++GG F ++ P +Y
Sbjct: 9 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 68
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG ICL +LR W+P + V+ + SL D N D
Sbjct: 69 PPKVAFTTRIYHPNINSNGSICLDILRSQ------WSPALTISKVLLSICSLLCD-PNPD 121
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ ++E + AR
Sbjct: 122 DPLVPEIARIYKTDREKYNRIAR 144
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ ++ ++ P C + H ++ P++ ++GG F ++ P +Y
Sbjct: 22 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 81
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG ICL +LR W+P + V+ + SL D N D
Sbjct: 82 PPKVAFTTRIYHPNINSNGSICLDILRSQ------WSPALTISKVLLSICSLLCD-PNPD 134
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ ++E + AR
Sbjct: 135 DPLVPEIARIYKTDREKYNRIAR 157
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ ++ ++ P C + H ++ P++ ++GG F ++ P +Y
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG ICL +LR W+P + V+ + SL D N D
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQ------WSPALTISKVLLSICSLLCD-PNPD 118
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ ++E + AR
Sbjct: 119 DPLVPEIARIYKTDREKYNRIAR 141
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ ++ ++ P C + H ++ P++ ++GG F ++ P +Y
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG ICL +LR W+P + V+ + SL D N D
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQ------WSPALTISKVLLSICSLLCD-PNPD 118
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ ++E + AR
Sbjct: 119 DPLVPEIARIYKTDREKYNRIAR 141
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ ++ ++ P C + H ++ P++ ++GG F ++ P +Y
Sbjct: 4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG ICL +LR W+P + V+ + SL D N D
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQ------WSPALTISKVLLSICSLLCD-PNPD 116
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ ++E + AR
Sbjct: 117 DPLVPEIARIYKTDREKYNRIAR 139
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ ++ ++ P C + H ++ P++ ++GG F ++ P +Y
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG ICL +LR W P + V+ + SL D N D
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQ------WGPALTISKVLLSICSLLCD-PNPD 118
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ ++E + AR
Sbjct: 119 DPLVPEIARIYKTDREKYNRIAR 141
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ ++ ++ P C + H ++ P++ + GG F ++ P +Y
Sbjct: 24 KRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFK 83
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV TK++HPNIN G ICL +L+ W+P + V+ ++SL TD N D
Sbjct: 84 PPKVNFTTKIYHPNINSQGAICLDILKDQ------WSPALTISKVLLSISSLLTD-PNPD 136
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ ++ + + AR
Sbjct: 137 DPLVPEIAHLYKSDRMRYDQTAR 159
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ ++ ++ P C + H + P++ ++GG F ++ P +Y
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG ICL +LR W+P + V+ + SL D N D
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQ------WSPALTISKVLLSICSLLCD-PNPD 118
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ ++E + AR
Sbjct: 119 DPLVPEIARIYKTDREKYNRIAR 141
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ ++ ++ P C + H ++ P++ ++GG F ++ P +Y
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG ICL LR W+P + V+ + SL D N D
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDALRSQ------WSPALTISKVLLSICSLLCD-PNPD 118
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ ++E + AR
Sbjct: 119 DPLVPEIARIYKTDREKYNRIAR 141
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ +++++ P C+ + H ++ P + ++GG F +V P +Y
Sbjct: 10 KRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPK+ TK++HPNIN NG I L +LR W+P + V+ + SL D N D
Sbjct: 70 PPKIAFTTKIYHPNINSNGSIKLDILRSQ------WSPALTVSKVLLSICSLLCD-PNPD 122
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL + A++Y+ +KE + AR
Sbjct: 123 DPLVPDIAQIYKSDKEKYNRHAR 145
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 7/147 (4%)
Query: 87 FIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEE 146
F+ K + KE+ ++ ++ P C + H ++ P++ ++GG F ++ P +
Sbjct: 8 FMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 67
Query: 147 YNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDL 206
Y PPKV T+++HPNIN NG ICL +LR W+P + V+ + SL D
Sbjct: 68 YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ------WSPALTISKVLLSICSLLCD- 120
Query: 207 LNFDDPLNIEAAEMYQKNKELFRERAR 233
N DDPL E A +Y+ +++ + +R
Sbjct: 121 PNPDDPLVPEIARIYKTDRDKYNRISR 147
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 13/156 (8%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + +E+ ++ ++ P++ + H ++ P + + GG F S+ P +Y
Sbjct: 4 KRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG ICL +LR W+P + V+ ++SL TD N D
Sbjct: 64 PPKVNFTTRIYHPNINSNGSICLDILRDQ------WSPALTISKVLLSISSLLTD-PNPD 116
Query: 211 DPLNIEAAEMYQKNKELFRERAR------CLEFGEG 240
DPL E A +Y+ ++ + AR + GEG
Sbjct: 117 DPLVPEIAHVYKTDRSRYELSAREWTRKYAIHGGEG 152
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ ++ ++ P C + H ++ P++ ++GG F ++ P +Y
Sbjct: 3 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG I L +LR W+P K+ V+ + SL D N D
Sbjct: 63 PPKVAFTTRIYHPNINSNGSISLDILRSQ------WSPALKISKVLLSICSLLCD-PNPD 115
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ ++E + AR
Sbjct: 116 DPLVPEIARIYKTDREKYNRIAR 138
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ ++ ++ P C + H ++ P++ ++GG F ++ P +Y
Sbjct: 6 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG ICL +LR W+P + V+ + SL D N D
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQ------WSPALTISKVLLSICSLLCD-PNPD 118
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ +++ + +R
Sbjct: 119 DPLVPEIARIYKTDRDKYNRISR 141
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ ++ ++ P C + H ++ P++ ++GG F ++ P +Y
Sbjct: 14 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG ICL +LR W+P + V+ + SL D N D
Sbjct: 74 PPKVAFTTRIYHPNINSNGSICLDILRSQ------WSPALTISKVLLSICSLLCD-PNPD 126
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ +++ + +R
Sbjct: 127 DPLVPEIARIYKTDRDKYNRISR 149
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ ++ ++ P C + H ++ P++ ++GG F ++ P +Y
Sbjct: 3 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG ICL +LR W+P + V+ + SL D N D
Sbjct: 63 PPKVAFTTRIYHPNINSNGSICLDILRSQ------WSPALTISKVLLSICSLLCD-PNPD 115
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ +++ + +R
Sbjct: 116 DPLVPEIARIYKTDRDKYNRISR 138
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ ++ ++ P C + H ++ P++ ++GG F ++ P +Y
Sbjct: 7 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 66
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG I L +LR W+P + V+ + SL D N D
Sbjct: 67 PPKVAFTTRIYHPNINSNGSISLDILRSQ------WSPALTISKVLLSICSLLCD-PNPD 119
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ ++E + AR
Sbjct: 120 DPLVPEIARIYKTDREKYNRIAR 142
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ ++ ++ P C + H ++ P++ ++GG F ++ P +Y
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG I L +LR W+P + V+ + SL D N D
Sbjct: 66 PPKVAFTTRIYHPNINSNGSISLDILRSQ------WSPALTISKVLLSICSLLCD-PNPD 118
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ ++E + AR
Sbjct: 119 DPLVPEIARIYKTDREKYNRIAR 141
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 87/153 (56%), Gaps = 11/153 (7%)
Query: 92 LLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTI-VISPDEGYWRGGKFLFSVSVPEEYNMA 150
LL +++ E+ +N + N L+ + + +I P + + GG F ++ P++Y +
Sbjct: 21 LLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLR 80
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLG-------WAPTRKLKDVIWGLNSLF 203
PPK+K +T++WHPN+++NGD+C+S+L + D G W P ++ ++ + S+
Sbjct: 81 PPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISML 140
Query: 204 TDLLNFDDPLNIEAAEMYQ--KNKELFRERARC 234
D N D P N++AA+ ++ +N E R+ ARC
Sbjct: 141 AD-PNGDSPANVDAAKEWREDRNGEFKRKVARC 172
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ ++ ++ P C + H ++ P++ ++GG F ++ P +Y
Sbjct: 22 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 81
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG I L +LR W+P + V+ + SL D N D
Sbjct: 82 PPKVAFTTRIYHPNINSNGSIXLDILRSQ------WSPALTISKVLLSICSLLCD-PNPD 134
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ ++E + AR
Sbjct: 135 DPLVPEIARIYKTDREKYNRIAR 157
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 73/122 (59%), Gaps = 7/122 (5%)
Query: 120 EFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQN 179
+ +++ PDEGY+ G F++ E Y + PPKV CL K++HPNI+ G++CL++LR++
Sbjct: 65 KLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILRED 124
Query: 180 SIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGE 239
W+P L+ +I GL LF + N +DPLN +AA++ + ++ F E R G
Sbjct: 125 ------WSPALDLQSIITGLLFLFLE-PNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGG 177
Query: 240 GI 241
I
Sbjct: 178 SI 179
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ ++ ++ P C+ + H ++ P++ ++GG F ++ P +Y
Sbjct: 4 KRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HP IN NG I L +LR W+P + V+ + SL D N D
Sbjct: 64 PPKVAFTTRIYHPAINSNGSISLDILRSQ------WSPALTISKVLLSICSLLCD-PNPD 116
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ ++E + AR
Sbjct: 117 DPLVPEIARIYKTDREKYNRIAR 139
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ ++ ++ P C + H ++ P++ ++GG F ++ P +Y
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG I L +LR W+P + V+ + SL D N D
Sbjct: 64 PPKVAFTTRIYHPNINSNGSISLDILRSQ------WSPALTISKVLLSICSLLCD-PNPD 116
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ +++ + +R
Sbjct: 117 DPLVPEIARIYKTDRDKYNRISR 139
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 87/153 (56%), Gaps = 10/153 (6%)
Query: 92 LLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTI-VISPDEGYWRGGKFLFSVSVPEEYNMA 150
LL K++ +M + + + N ++++ + VI P + + GG F + P +Y
Sbjct: 7 LLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQK 66
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLG-------WAPTRKLKDVIWGLNSLF 203
PPK+K ++++WHPNI++ G++C+S+L D G W P ++ ++ + S+
Sbjct: 67 PPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISML 126
Query: 204 TDLLNFDDPLNIEAAEMYQKNKELFRER-ARCL 235
TD NF+ P N++AA+M ++N F+++ A+C+
Sbjct: 127 TD-PNFESPANVDAAKMQRENYAEFKKKVAQCV 158
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
Query: 93 LIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPP 152
+IKE Q + K + N + ++ P + + GG F + +PEEY MA P
Sbjct: 11 IIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 70
Query: 153 KVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDP 212
KV+ +TK++HPN+++ G ICL +L+ W+P +++ V+ + +L + N DDP
Sbjct: 71 KVRFMTKIYHPNVDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDP 123
Query: 213 LNIEAAEMYQKNKELFRERARC 234
L + AE ++ N+ E AR
Sbjct: 124 LANDVAEQWKTNEAQAIETARA 145
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
Query: 93 LIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPP 152
+IKE Q + K + N + ++ P + + GG F + +PEEY MA P
Sbjct: 13 IIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 72
Query: 153 KVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDP 212
KV+ +TK++HPN+++ G ICL +L+ W+P +++ V+ + +L + N DDP
Sbjct: 73 KVRFMTKIYHPNVDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDP 125
Query: 213 LNIEAAEMYQKNKELFRERARC 234
L + AE ++ N+ E AR
Sbjct: 126 LANDVAEQWKTNEAQAIETARA 147
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K L+++ + ++Q+ P + N + ++ PD+ W GG F S+ E+Y
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PP V+ +++++HPNI +G ICL +L+ W+P + ++ + SL D N +
Sbjct: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQ------WSPIYDVAAILTSIQSLLCD-PNPN 119
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
P N EAA MY ++K + R R
Sbjct: 120 SPANSEAARMYSESKREYNRRVR 142
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
Query: 93 LIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPP 152
+IKE Q + K + N + ++ P + + GG F + +PEEY MA P
Sbjct: 10 IIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 69
Query: 153 KVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDP 212
KV+ +TK++HPN+++ G ICL +L+ W+P +++ V+ + +L + N DDP
Sbjct: 70 KVRFMTKIYHPNVDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDP 122
Query: 213 LNIEAAEMYQKNKELFRERARC 234
L + AE ++ N+ E AR
Sbjct: 123 LANDVAEQWKTNEAQAIETARA 144
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
Query: 93 LIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPP 152
+IKE Q + K + N + ++ P + + GG F + +PEEY MA P
Sbjct: 8 IIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 67
Query: 153 KVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDP 212
KV+ +TK++HPN+++ G ICL +L+ W+P +++ V+ + +L + N DDP
Sbjct: 68 KVRFMTKIYHPNVDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDP 120
Query: 213 LNIEAAEMYQKNKELFRERARC 234
L + AE ++ N+ E AR
Sbjct: 121 LANDVAEQWKTNEAQAIETARA 142
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
Query: 93 LIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPP 152
+IKE Q + K + N + ++ P + + GG F + +PEEY MA P
Sbjct: 6 IIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 65
Query: 153 KVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDP 212
KV+ +TK++HPN+++ G ICL +L+ W+P +++ V+ + +L + N DDP
Sbjct: 66 KVRFMTKIYHPNVDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDP 118
Query: 213 LNIEAAEMYQKNKELFRERARC 234
L + AE ++ N+ E AR
Sbjct: 119 LANDVAEQWKTNEAQAIETARA 140
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 8/143 (5%)
Query: 93 LIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPP 152
L KE++++E + N + P+ + GG F ++++P +Y PP
Sbjct: 28 LQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPP 87
Query: 153 KVKCLTKLWHPNI-NENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDD 211
K+K +TK+WHPNI ++ G ICL +L+ W+P ++ + + +L +D DD
Sbjct: 88 KIKFVTKIWHPNISSQTGAICLDVLKNE------WSPALTIRTALLSIQALLSD-PQPDD 140
Query: 212 PLNIEAAEMYQKNKELFRERARC 234
P + E A+MY++N LF + A
Sbjct: 141 PQDAEVAKMYKENHALFVKTASV 163
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 7/141 (4%)
Query: 93 LIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPP 152
+ KE Q + P N+ H ++ PD + GG + + +PE+Y M PP
Sbjct: 6 ITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPP 65
Query: 153 KVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDP 212
KV+ LTK++HPNI++ G ICL +L+ W+P +++ V+ + +L + DDP
Sbjct: 66 KVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLSS-PEPDDP 118
Query: 213 LNIEAAEMYQKNKELFRERAR 233
L+ + AE ++++K AR
Sbjct: 119 LDSKVAEHFKQDKNDAEHVAR 139
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 7/141 (4%)
Query: 93 LIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPP 152
+ KE Q + P N+ H ++ PD + GG + + +PE+Y M PP
Sbjct: 6 ITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPP 65
Query: 153 KVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDP 212
KV+ LTK++HPNI++ G ICL +L+ W+P +++ V+ + +L + DDP
Sbjct: 66 KVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLSS-PEPDDP 118
Query: 213 LNIEAAEMYQKNKELFRERAR 233
L+ + AE ++++K AR
Sbjct: 119 LDSKVAEHFKQDKNDAEHVAR 139
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Query: 93 LIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPP 152
++KE++++++ P + ++ ++ + ++ PD+ + F +S P EY PP
Sbjct: 6 VVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPP 65
Query: 153 KVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDP 212
+K TK++HPN++ENG ICL + I W P K V+ LN L + N +P
Sbjct: 66 MIKFTTKIYHPNVDENGQICLPI-----ISSENWKPCTKTCQVLEALNVL-VNRPNIREP 119
Query: 213 LNIEAAEMYQKNKELFRERAR--CLEFG 238
L ++ A++ +N ELFR+ A L FG
Sbjct: 120 LRMDLADLLTQNPELFRKNAEEFTLRFG 147
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Query: 93 LIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPP 152
++KE++++++ P + ++ ++ + ++ PD+ + F +S P EY PP
Sbjct: 9 VVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPP 68
Query: 153 KVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDP 212
+K TK++HPN++ENG ICL + I W P K V+ LN L + N +P
Sbjct: 69 MIKFTTKIYHPNVDENGQICLPI-----ISSENWKPCTKTCQVLEALNVL-VNRPNIREP 122
Query: 213 LNIEAAEMYQKNKELFRERAR--CLEFG 238
L ++ A++ +N ELFR+ A L FG
Sbjct: 123 LRMDLADLLTQNPELFRKNAEEFTLRFG 150
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 13/155 (8%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
+ L+++ ++++++ P T N L I+ P E + G F S+ EEY
Sbjct: 10 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 69
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PP VK ++K++HPN+ +G ICL +L+ W+PT + ++ + SL D N +
Sbjct: 70 PPTVKFISKMFHPNVYADGSICLDILQNR------WSPTYDVAAILTSIQSLL-DEPNPN 122
Query: 211 DPLNIEAAEMYQKNKELFRERARC------LEFGE 239
P N AA++YQ+N+ + +R + L FGE
Sbjct: 123 SPANSLAAQLYQENRREYEKRVQQIVEQSWLNFGE 157
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 13/155 (8%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
+ L+++ ++++++ P T N L I+ P E + G F S+ EEY
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PP VK ++K++HPN+ +G ICL +L+ W+PT + ++ + SL D N +
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNR------WSPTYDVAAILTSIQSLL-DEPNPN 119
Query: 211 DPLNIEAAEMYQKNKELFRERARC------LEFGE 239
P N AA++YQ+N+ + +R + L FGE
Sbjct: 120 SPANSLAAQLYQENRREYEKRVQQIVEQSWLNFGE 154
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Query: 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFT-IVISPDEGYWRGGKFLFSVSVPEEY 147
R K ++KE+Q ++ + +F + + +H + P + GGKF+ + VP EY
Sbjct: 3 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 62
Query: 148 NMAPPKVKCLTKLWHPNINE-NGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDL 206
PPK++ TK++HPNI+ G ICL +LR W+P LK + L +L
Sbjct: 63 PFKPPKMQFDTKVYHPNISSVTGAICLDILRN------AWSPVITLKSALISLQALLQS- 115
Query: 207 LNFDDPLNIEAAEMYQKNKELFRERA 232
+DP + E A+ Y +++E F + A
Sbjct: 116 PEPNDPQDAEVAQHYLRDRESFNKTA 141
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNM 149
K L+ E++ +++ + + L+ + + I P Y+ GG F + P +Y
Sbjct: 10 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 69
Query: 150 APPKVKCLTKLWHPNINENGDICLSLL-------RQNSIDGLGWAPTRKLKDVIWGLNSL 202
+PP + LTK+WHPNI E GD+C+S+L + + W PT+ ++ ++ + SL
Sbjct: 70 SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISL 129
Query: 203 FTDLLNFDDPLNIEAAEMYQKNKE 226
+ F P N++A+ MY+K KE
Sbjct: 130 LNEPNTF-SPANVDASVMYRKWKE 152
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNM 149
K L+ E++ +++ + + L+ + + I P Y+ GG F + P +Y
Sbjct: 7 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 66
Query: 150 APPKVKCLTKLWHPNINENGDICLSLL-------RQNSIDGLGWAPTRKLKDVIWGLNSL 202
+PP + LTK+WHPNI E GD+C+S+L + + W PT+ ++ ++ + SL
Sbjct: 67 SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISL 126
Query: 203 FTDLLNFDDPLNIEAAEMYQKNKE 226
+ F P N++A+ MY+K KE
Sbjct: 127 LNEPNTF-SPANVDASVMYRKWKE 149
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Query: 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFT-IVISPDEGYWRGGKFLFSVSVPEEY 147
R K ++KE+Q ++ + +F + + +H + P + GGKF+ + VP EY
Sbjct: 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61
Query: 148 NMAPPKVKCLTKLWHPNINE-NGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDL 206
PPK++ TK++HPNI+ G ICL +L+ W+P LK + L +L
Sbjct: 62 PFKPPKMQFDTKVYHPNISSVTGAICLDILKN------AWSPVITLKSALISLQALLQS- 114
Query: 207 LNFDDPLNIEAAEMYQKNKELFRERA 232
+DP + E A+ Y +++E F + A
Sbjct: 115 PEPNDPQDAEVAQHYLRDRESFNKTA 140
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 8/146 (5%)
Query: 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYN 148
R K KEV + E+ N K + N + P + + GG++ + +PE Y
Sbjct: 25 RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 84
Query: 149 MAPPKVKCLTKLWHPNINE-NGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLL 207
PPKV+ +TK+WHPNI+ G ICL +L+ WA L+ V+
Sbjct: 85 FNPPKVRFITKIWHPNISSVTGAICLDILKDQ------WAAAMTLRTVL-LSLQALLAAA 137
Query: 208 NFDDPLNIEAAEMYQKNKELFRERAR 233
DDP + A Y++N E+F++ AR
Sbjct: 138 EPDDPQDAVVANQYKQNPEMFKQTAR 163
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 8/146 (5%)
Query: 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYN 148
R K KEV + E+ N K + N + P + + GG++ + +PE Y
Sbjct: 61 RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 120
Query: 149 MAPPKVKCLTKLWHPNINE-NGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLL 207
PPKV+ +TK+WHPNI+ G ICL +L+ WA L+ V+
Sbjct: 121 FNPPKVRFITKIWHPNISSVTGAICLDILKDQ------WAAAMTLRTVL-LSLQALLAAA 173
Query: 208 NFDDPLNIEAAEMYQKNKELFRERAR 233
DDP + A Y++N E+F++ AR
Sbjct: 174 EPDDPQDAVVANQYKQNPEMFKQTAR 199
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 8/146 (5%)
Query: 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYN 148
R K KEV + E+ N K + N + P + + GG++ + +PE Y
Sbjct: 12 RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 71
Query: 149 MAPPKVKCLTKLWHPNINE-NGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLL 207
PPKV+ +TK+WHPNI+ G ICL +L+ WA L+ V+
Sbjct: 72 FNPPKVRFITKIWHPNISSVTGAICLDILKDQ------WAAAMTLRTVL-LSLQALLAAA 124
Query: 208 NFDDPLNIEAAEMYQKNKELFRERAR 233
DDP + A Y++N E+F++ AR
Sbjct: 125 EPDDPQDAVVANQYKQNPEMFKQTAR 150
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 8/146 (5%)
Query: 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYN 148
R K KEV + E+ N K + N + P + + GG++ + +PE Y
Sbjct: 10 RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 69
Query: 149 MAPPKVKCLTKLWHPNINE-NGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLL 207
PPKV+ +TK+WHPNI+ G ICL +L+ WA L+ V+
Sbjct: 70 FNPPKVRFITKIWHPNISSVTGAICLDILKDQ------WAAAMTLRTVL-LSLQALLAAA 122
Query: 208 NFDDPLNIEAAEMYQKNKELFRERAR 233
DDP + A Y++N E+F++ AR
Sbjct: 123 EPDDPQDAVVANQYKQNPEMFKQTAR 148
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 8/146 (5%)
Query: 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYN 148
R K KEV + E+ N K + N + P + + GG++ + +PE Y
Sbjct: 9 RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 68
Query: 149 MAPPKVKCLTKLWHPNINE-NGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLL 207
PPKV+ +TK+WHPNI+ G ICL +L+ WA L+ V+
Sbjct: 69 FNPPKVRFITKIWHPNISSVTGAICLDILKDQ------WAAAMTLRTVL-LSLQALLAAA 121
Query: 208 NFDDPLNIEAAEMYQKNKELFRERAR 233
DDP + A Y++N E+F++ AR
Sbjct: 122 EPDDPQDAVVANQYKQNPEMFKQTAR 147
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 7/145 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
+ L+++ + ++++ P + N + ++ P+ + G F + EEY
Sbjct: 7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNK 66
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PP V+ L+K++HPN+ +G ICL +L+ W+PT + ++ + SL D N +
Sbjct: 67 PPTVRFLSKMFHPNVYADGSICLDILQNR------WSPTYDVSSILTSIQSLL-DEPNPN 119
Query: 211 DPLNIEAAEMYQKNKELFRERARCL 235
P N +AA++YQ+NK + +R +
Sbjct: 120 SPANSQAAQLYQENKREYEKRVSAI 144
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
+ L+++ + M+++ P N + ++I P + + G F + EEY
Sbjct: 7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 66
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PP VK L++++HPN+ NG+ICL +L+ W PT + ++ + SLF D N
Sbjct: 67 PPHVKFLSEMFHPNVYANGEICLDILQNR------WTPTYDVASILTSIQSLFND-PNPA 119
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
P N+EAA +++ +K + +R +
Sbjct: 120 SPANVEAATLFKDHKSQYVKRVK 142
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 81/144 (56%), Gaps = 9/144 (6%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNM 149
K +IKE +++ + P T + ++L F + I P++ + G F + +P++Y M
Sbjct: 8 KRIIKETEKLVSD-PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPM 66
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNF 209
PKV+ LTK++HPNI+ G ICL +L+ N W+P +++ V+ + +L N
Sbjct: 67 EAPKVRFLTKIYHPNIDRLGRICLDVLKTN------WSPALQIRTVLLSIQALLAS-PNP 119
Query: 210 DDPLNIEAAEMYQKNKELFRERAR 233
+DPL + AE + KN++ + +AR
Sbjct: 120 NDPLANDVAEDWIKNEQGAKAKAR 143
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 81/144 (56%), Gaps = 9/144 (6%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNM 149
K +IKE +++ + P T + ++L F + I P++ + G F + +P++Y M
Sbjct: 6 KRIIKETEKLVSD-PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPM 64
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNF 209
PKV+ LTK++HPNI+ G ICL +L+ N W+P +++ V+ + +L N
Sbjct: 65 EAPKVRFLTKIYHPNIDRLGRICLDVLKTN------WSPALQIRTVLLSIQALLAS-PNP 117
Query: 210 DDPLNIEAAEMYQKNKELFRERAR 233
+DPL + AE + KN++ + +AR
Sbjct: 118 NDPLANDVAEDWIKNEQGAKAKAR 141
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 132 WRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRK 191
W GG + +++ PEEY PPK + L+HPN+ +G +CLS+L + GW P
Sbjct: 59 WEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEE----GWKPAIT 114
Query: 192 LKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
+K ++ G+ L D N P EA M++K+K + +R R
Sbjct: 115 IKQILLGIQDLLDD-PNIASPAQTEAYTMFKKDKVEYEKRVR 155
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ E+ + P C N + ++ P + GG F ++ +Y
Sbjct: 6 KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFK 65
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++H NIN G ICL +L+ N W+P + V+ + SL TD N
Sbjct: 66 PPKVTFRTRIYHCNINSQGVICLDILKDN------WSPALTISKVLLSICSLLTD-CNPA 118
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL A Y N+ AR
Sbjct: 119 DPLVGSIATQYMTNRAEHDRMAR 141
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 78 VDKSSNKRIF-IRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGK 136
V S N ++ K + KE+ ++ + P C N + ++ P + GG
Sbjct: 37 VSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGV 96
Query: 137 FLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVI 196
F ++ EY PPKV T+++H NIN G ICL +L+ N W+P + V+
Sbjct: 97 FFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN------WSPALTISKVL 150
Query: 197 WGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
+ SL TD N DPL A Y N+ AR
Sbjct: 151 LSICSLLTD-CNPADPLVGSIATQYMTNRAEHDRMAR 186
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 80/144 (55%), Gaps = 9/144 (6%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNM 149
K +IKE +++ + P T + ++L F + I P++ + G F + +P++Y M
Sbjct: 6 KRIIKETEKLVSD-PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPM 64
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNF 209
PKV+ LTK++HPNI+ G I L +L+ N W+P +++ V+ + +L N
Sbjct: 65 EAPKVRFLTKIYHPNIDRLGRISLDVLKTN------WSPALQIRTVLLSIQALLAS-PNP 117
Query: 210 DDPLNIEAAEMYQKNKELFRERAR 233
+DPL + AE + KN++ + +AR
Sbjct: 118 NDPLANDVAEDWIKNEQGAKAKAR 141
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 132 WRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNI-NENGDICLSLLRQNSIDGLGWAPTR 190
+ GG F + +P +Y PPK+K +TK+WHPNI ++ G ICL +L+ W+P
Sbjct: 89 YEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHE------WSPAL 142
Query: 191 KLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
++ + + ++ D + DP + E A+M +N LF + A+
Sbjct: 143 TIRTALLSIQAMLADPVP-TDPQDAEVAKMMIENHPLFVQTAK 184
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 124 VISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDG 183
+I PD + G F ++ P EY PPK+ TK++HPNI+E G +CL + I
Sbjct: 38 LIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV-----ISA 92
Query: 184 LGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERA 232
W P K VI L +L D + PL + AE Y K+++ F + A
Sbjct: 93 ENWKPATKTDQVIQSLIALVND-PQPEHPLRADLAEEYSKDRKKFCKNA 140
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 93 LIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPP 152
L+KE++E+ + + + +L + +I PD + G F ++ P EY PP
Sbjct: 9 LMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPP 68
Query: 153 KVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDP 212
K+ TK++HPNI+E G +CL + I W P K VI L +L D + P
Sbjct: 69 KITFKTKIYHPNIDEKGQVCLPV-----ISAENWKPATKTDQVIQSLIALVND-PQPEHP 122
Query: 213 LNIEAAEMYQKNKELFRERA 232
L + AE Y K+++ F + A
Sbjct: 123 LRADLAEEYSKDRKKFCKNA 142
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 79/144 (54%), Gaps = 9/144 (6%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNM 149
K +IKE +++ + P T + ++L F + I P++ + G F + +P++Y M
Sbjct: 6 KRIIKETEKLVSD-PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPM 64
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNF 209
PKV+ LTK++HP I+ G I L +L+ N W+P +++ V+ + +L N
Sbjct: 65 EAPKVRFLTKIYHPAIDRLGRISLDVLKTN------WSPALQIRTVLLSIQALLAS-PNP 117
Query: 210 DDPLNIEAAEMYQKNKELFRERAR 233
+DPL + AE + KN++ + +AR
Sbjct: 118 NDPLANDVAEDWIKNEQGAKAKAR 141
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGY-WRGGKFLFSVSVPEEYNM 149
+L+ KEV + + P+ K F N L + + I EG + GG F + + +++
Sbjct: 16 RLVYKEVTTLTADPPDGIKV-FPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPA 74
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNF 209
+PPK LTK++HPN+ NG+IC+++L+++ W ++ V+ + L N
Sbjct: 75 SPPKGYFLTKIFHPNVGANGEICVNVLKRD------WTAELGIRHVLLTIKCLLIH-PNP 127
Query: 210 DDPLNIEAAEMYQKNKELFRERARCL 235
+ LN EA + +N E + RAR L
Sbjct: 128 ESALNEEAGRLLLENYEEYAARARLL 153
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 82/151 (54%), Gaps = 9/151 (5%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEF-TIVISPDEGYWRGGKFLFSVSVPEEYNM 149
K L+ E +++ N P N + E+ +++ P++ + G F +S P +Y +
Sbjct: 9 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 68
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLG-------WAPTRKLKDVIWGLNSL 202
+PPK++ +++HPNI +G +C+S+L D +G W+P + ++ ++ + S+
Sbjct: 69 SPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSM 128
Query: 203 FTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
+ N + N++A++M++ ++E F + A+
Sbjct: 129 LAE-PNDESGANVDASKMWRDDREQFYKIAK 158
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 82/151 (54%), Gaps = 9/151 (5%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEF-TIVISPDEGYWRGGKFLFSVSVPEEYNM 149
K L+ E +++ N P N + E+ +++ P++ + G F +S P +Y +
Sbjct: 10 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 69
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLG-------WAPTRKLKDVIWGLNSL 202
+PPK++ +++HPNI +G +C+S+L D +G W+P + ++ ++ + S+
Sbjct: 70 SPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSM 129
Query: 203 FTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
+ N + N++A++M++ ++E F + A+
Sbjct: 130 LAE-PNDESGANVDASKMWRDDREQFYKIAK 159
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 82/151 (54%), Gaps = 9/151 (5%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEF-TIVISPDEGYWRGGKFLFSVSVPEEYNM 149
K L+ E +++ N P N + E+ +++ P++ + G F +S P +Y +
Sbjct: 12 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 71
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLG-------WAPTRKLKDVIWGLNSL 202
+PPK++ +++HPNI +G +C+S+L D +G W+P + ++ ++ + S+
Sbjct: 72 SPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSM 131
Query: 203 FTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
+ N + N++A++M++ ++E F + A+
Sbjct: 132 LAE-PNDESGANVDASKMWRDDREQFYKIAK 161
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 82/151 (54%), Gaps = 9/151 (5%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEF-TIVISPDEGYWRGGKFLFSVSVPEEYNM 149
K L+ E +++ N P N + E+ +++ P++ + G F +S P +Y +
Sbjct: 6 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 65
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLG-------WAPTRKLKDVIWGLNSL 202
+PPK++ +++HPNI +G +C+S+L D +G W+P + ++ ++ + S+
Sbjct: 66 SPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSM 125
Query: 203 FTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
+ N + N++A++M++ ++E F + A+
Sbjct: 126 LAE-PNDESGANVDASKMWRDDREQFYKIAK 155
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 110 TKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINEN 168
T F + ++L ++ + P + + K+ ++ P +Y PP VK T WHPN++++
Sbjct: 30 TAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQS 89
Query: 169 GDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKE 226
G+ICL +L++N W + ++ ++ L SL + N PLN +AA+M+ E
Sbjct: 90 GNICLDILKEN------WTASYDVRTILLSLQSLLGE-PNNASPLNAQAADMWSNQTE 140
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 132 WRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRK 191
W GG F + ++Y +PPK K L+HPN+ +G +CLS+L ++ W P
Sbjct: 56 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDK----DWRPAIT 111
Query: 192 LKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARC 234
+K ++ G+ L + N DP EA +Y +N+ + +R R
Sbjct: 112 IKQILLGIQELLNE-PNIQDPAQAEAYTIYCQNRVEYEKRVRA 153
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 132 WRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRK 191
W GG F + ++Y +PPK K L+HPN+ +G +CLS+L ++ W P
Sbjct: 56 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK----DWRPAIT 111
Query: 192 LKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARC 234
+K ++ G+ L + N DP EA +Y +N+ + +R R
Sbjct: 112 IKQILLGIQELLNE-PNIQDPAQAEAYTIYCQNRVEYEKRVRA 153
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 132 WRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRK 191
W GG F + ++Y +PPK K L+HPN+ +G +CLS+L ++ W P
Sbjct: 53 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK----DWRPAIT 108
Query: 192 LKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
+K ++ G+ L + N DP EA +Y +N+ + +R R
Sbjct: 109 IKQILLGIQELLNE-PNIQDPAQAEAYTIYCQNRVEYEKRVR 149
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 132 WRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRK 191
W GG F + ++Y +PPK K L+HPN+ +G +CLS+L ++ W P
Sbjct: 54 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK----DWRPAIT 109
Query: 192 LKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
+K ++ G+ L + N DP EA +Y +N+ + +R R
Sbjct: 110 IKQILLGIQELLNE-PNIQDPAQAEAYTIYCQNRVEYEKRVR 150
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 132 WRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRK 191
W GG F + ++Y +PPK K L+HPN+ +G +CLS+L ++ W P
Sbjct: 55 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK----DWRPAIT 110
Query: 192 LKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARC 234
+K ++ G+ L + N DP EA +Y +N+ + +R R
Sbjct: 111 IKQILLGIQELLNE-PNIQDPAQAEAYTIYCQNRVEYEKRVRA 152
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 132 WRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRK 191
W GG F + ++Y +PPK K L+HPN+ +G +CLS+L ++ W P
Sbjct: 55 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK----DWRPAIT 110
Query: 192 LKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARC 234
+K ++ G+ L + N DP EA +Y +N+ + +R R
Sbjct: 111 IKQILLGIQELLNE-PNIQDPAQAEAYTIYCQNRVEYEKRVRA 152
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 132 WRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRK 191
W GG F + ++Y +PPK K L+HPN+ +G +CLS+L ++ W P
Sbjct: 58 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK----DWRPAIT 113
Query: 192 LKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARC 234
+K ++ G+ L + N DP EA +Y +N+ + +R R
Sbjct: 114 IKQILLGIQELLNE-PNIQDPAQAEAYTIYCQNRVEYEKRVRA 155
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 118 LHEFTIVISPDEGY-WRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLL 176
L ++ I EG W GG + +V P EY PPKVK +HPN+ +G ICLS+L
Sbjct: 38 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSIL 97
Query: 177 RQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRER 231
++ W P LK ++ G+ L D N + P A + +NK + ++
Sbjct: 98 NEDQ----DWRPAITLKQIVLGVQDLL-DSPNPNSPAQEPAWRSFSRNKAEYDKK 147
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 118 LHEFTIVISPDEGY-WRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLL 176
L ++ I EG W GG + +V P EY PPKVK +HPN+ +G ICLS+L
Sbjct: 40 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSIL 99
Query: 177 RQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRER 231
++ W P LK ++ G+ L D N + P A + +NK + ++
Sbjct: 100 NEDQ----DWRPAITLKQIVLGVQDLL-DSPNPNSPAQEPAWRSFSRNKAEYDKK 149
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 132 WRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRK 191
+ G F V +PE Y PP+++ LT ++HPNI+ G ICL +L+ W P+
Sbjct: 48 YEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKG--AWRPSLN 105
Query: 192 LKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
+ V+ + L ++ N DDPL + + ++ NK F + AR
Sbjct: 106 IATVLTSIQLLMSE-PNPDDPLMADISSEFKYNKPAFLKNAR 146
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 132 WRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRK 191
W GG F + ++Y +PPK K L+HP + +G +CLS+L ++ W P
Sbjct: 56 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDK----DWRPAIT 111
Query: 192 LKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARC 234
+K ++ G+ L + N DP EA +Y +N+ + +R R
Sbjct: 112 IKQILLGIQELLNE-PNIQDPAQAEAYTIYCQNRVEYEKRVRA 153
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 132 WRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRK 191
W GG F + ++Y +PPK K L+HPN+ +G +CLS+L ++ W P
Sbjct: 56 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK----DWRPAIT 111
Query: 192 LKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARC 234
+K ++ G+ L + N P EA +Y +N+ + +R R
Sbjct: 112 IKQILLGIQELLNE-PNIQSPAQAEAYTIYCQNRVEYEKRVRA 153
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 127 PDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINE-NGDICLSLLRQNSIDGLG 185
P+ + GG + V++P++Y A P + + KL HPN++E +G +CL ++ Q
Sbjct: 38 PNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQT------ 91
Query: 186 WAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
W P L +V N DPLN +AA + K+K ++ E+ +
Sbjct: 92 WTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVK 139
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 132 WRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRK 191
W GG F + ++Y +PPK K L+HPN+ +G +CLS+L ++ W P
Sbjct: 56 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK----DWRPAIT 111
Query: 192 LKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARC 234
+K ++ G+ L + N P EA +Y +N+ + +R R
Sbjct: 112 IKQILLGIQELLNE-PNIQAPAQAEAYTIYCQNRVEYEKRVRA 153
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 132 WRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRK 191
W GG F + ++Y +PPK K L+HPN+ +G + LS+L ++ W P
Sbjct: 53 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDK----DWRPAIT 108
Query: 192 LKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARC 234
+K ++ G+ L + N DP EA +Y +N+ + +R R
Sbjct: 109 IKQILLGIQELLNE-PNIQDPAQAEAYTIYXQNRVEYEKRVRA 150
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 132 WRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRK 191
W GG F + ++Y +PPK K L+HPN+ +G + LS+L ++ W P
Sbjct: 53 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDK----DWRPAIT 108
Query: 192 LKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARC 234
+K ++ G+ L + N DP EA +Y +N+ + +R R
Sbjct: 109 IKQILLGIQELLNE-PNIQDPAQAEAYTIYCQNRVEYEKRVRA 150
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 77/151 (50%), Gaps = 9/151 (5%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNM 149
K L+KE+Q++ ++ P + N++ + +I P + + G F + P++Y +
Sbjct: 7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 66
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDG-------LGWAPTRKLKDVIWGLNSL 202
+PPK+ + HPNI NG++C+S+L D W+P + ++ ++ + S+
Sbjct: 67 SPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSM 126
Query: 203 FTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
++ N + NI+A +++ N+ F + +
Sbjct: 127 LSE-PNIESGANIDACILWRDNRPEFERQVK 156
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 132 WRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNIN-ENGDICLSLLRQNSIDGLGWAPTR 190
W+G F ++ EYN APP VK +T +HPN++ G C+ L W
Sbjct: 67 WQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPE----KWNTNY 122
Query: 191 KLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
L ++ L + ++ + ++P+N+EAA + K++ L+R R
Sbjct: 123 TLSSILLALQVMLSNPV-LENPVNLEAARILVKDESLYRTILR 164
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 118 LHEFTI-VISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINE-NGDICLSL 175
L+EF + P + GG + V +P++Y P + + K++HPNI+E +G +CL +
Sbjct: 50 LNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDV 109
Query: 176 LRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD---DPLNIEAAEMYQKNKELFRERA 232
+ Q W L ++ S LL + DPLN +AA MY E ++++
Sbjct: 110 INQT------WTALYDLTNI---FESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKI 160
Query: 233 R 233
+
Sbjct: 161 K 161
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 136 KFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDV 195
++ S+ P Y P VK LT +HPN++ G+I L +L++ W+ ++ +
Sbjct: 78 RYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEK------WSALYDVRTI 131
Query: 196 IWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRE 230
+ + SL + N D PLN AAE++ KN F++
Sbjct: 132 LLSIQSLLGE-PNIDSPLNTHAAELW-KNPTAFKK 164
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 127 PDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINE-NGDICLSLLRQNSIDGLG 185
P+ + G ++ V +P +Y P + ++ HPN++E +G +CL ++ Q
Sbjct: 47 PEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQT------ 100
Query: 186 WAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELF 228
W P +L+++ N DPLN++AA + ++ F
Sbjct: 101 WTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGF 143
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 82 SNKRIFIRDKLLIKEV----QEMEQNLPNTCKTKFTNPNHLHEFTI-VISPDEGYWRGGK 136
SNKRI KLL++EV + P++ + + ++ + + V +P + + G
Sbjct: 9 SNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAG 68
Query: 137 FLFSVSV--PEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKD 194
+ +SV ++Y PP V+ +T ++ P + G IC ++ W P + D
Sbjct: 69 NTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDF------WTPDQHASD 122
Query: 195 VI-WGLNSLFTDLLN-FDDPLNIEAAEMYQKNKELFRERAR 233
VI L+ +F+ + DD +N EA +K + F R R
Sbjct: 123 VIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR 163
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 122 TIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWH-----PNINENGDICLSLL 176
++ P + + G F F V P++Y +PP V T H PN+ +G +CLS+L
Sbjct: 114 VLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSIL 173
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 122 TIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCL-TKLWHPNI-NENGDICLSLLRQN 179
I+ P + + +F + VP Y M PPK+ + + H N+ + G+ICL++L+
Sbjct: 52 AIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPE 111
Query: 180 SIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQ 222
W P L + + L + ++ D PL+++ + +
Sbjct: 112 E-----WTPVWDLLHCVHAVWRLLREPVS-DSPLDVDIGNIIR 148
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 122 TIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCL-TKLWHPNI-NENGDICLSLLRQN 179
I+ P + + +F + VP Y M PPK+ + + H N+ + G+ICL++L+
Sbjct: 52 AIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPE 111
Query: 180 SIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQ 222
W P L + + L + + D PL+++ + +
Sbjct: 112 E-----WTPVWDLLHCVHAVWRLLREPV-CDSPLDVDIGAIIR 148
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 122 TIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCL-TKLWHPNI-NENGDICLSLLRQN 179
I+ P + + +F + VP Y M PPK+ + + H N+ + G+ICL++L+
Sbjct: 52 AIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPE 111
Query: 180 SIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQ 222
W P L + + L + + D PL+++ + +
Sbjct: 112 E-----WTPVWDLLHCVHAVWRLLREPV-CDSPLDVDIGNIIR 148
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 95 KEVQEMEQNLPNTCKTKFTNPNHLHEFTI-VISPDEGYWRGGKFLFSVSVPEEYNMAPPK 153
KE+ N P C T +PN++ + + + + + + + P++Y + PP
Sbjct: 13 KELHNFLNNPPINC-TLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPI 71
Query: 154 VKCLTKL-WHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFT 204
V L K H ++ NGDICLSLL G + P+ + ++ + S+ +
Sbjct: 72 VYFLQKPPKHTHVYSNGDICLSLL------GDDYNPSLSISGLVLSIISMLS 117
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 95 KEVQEMEQNLPNTCKTKFTNPNHLHEFTI-VISPDEGYWRGGKFLFSVSVPEEYNMAPPK 153
KE+ +N P C T +P+++ + + + + + + + P+ Y + PP
Sbjct: 27 KELNNFLKNPPINC-TIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPI 85
Query: 154 VKCLTKL-WHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTD 205
V L K H ++ NGDICLS+L G + P+ + +I + S+ +
Sbjct: 86 VYFLQKPPKHTHVYSNGDICLSVL------GDDYNPSLSISGLILSIISMLSS 132
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 113 TNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDIC 172
P + + ++ SP Y++GG SV V EY A P K G+
Sbjct: 158 VRPATQYRYLLIASPAGAYFKGGIAPVSVWVSTEYVRACPGGTGAAKF-------GGNYA 210
Query: 173 LSLLRQ-----NSIDGLGW--APTRKLKDVIWGLNSLFT 204
SLL Q N D + W A R+ + + G+N F
Sbjct: 211 ASLLAQAEAAENGCDQVVWLDAVERRYIEEMGGMNIFFV 249
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 162 HPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFT 204
HP++ NG ICLS+L ++ W+P ++ V + S+ +
Sbjct: 100 HPHVYSNGHICLSILTED------WSPALSVQSVCLSIISMLS 136
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 20/87 (22%)
Query: 125 ISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPN--INENGDICLSLLRQNSID 182
++P EG + GK +F P E+ PP + +T PN N +CLS+
Sbjct: 55 MTPYEGGYYHGKLIF----PREFPFKPPSIYMIT----PNGRFKCNTRLCLSI---TDFH 103
Query: 183 GLGWAPTRKLKDVIWGLNSLFTDLLNF 209
W P W ++++ T LL+F
Sbjct: 104 PDTWNPA-------WSVSTILTGLLSF 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,939,500
Number of Sequences: 62578
Number of extensions: 328257
Number of successful extensions: 748
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 109
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)