Query psy4609
Match_columns 242
No_of_seqs 182 out of 1236
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 21:16:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 1.8E-46 3.9E-51 305.4 16.7 146 89-241 6-152 (153)
2 KOG0417|consensus 100.0 5.5E-46 1.2E-50 296.9 14.2 144 90-241 3-147 (148)
3 PTZ00390 ubiquitin-conjugating 100.0 9.9E-43 2.1E-47 285.3 18.1 144 89-240 3-147 (152)
4 KOG0419|consensus 100.0 6.6E-43 1.4E-47 272.3 14.4 144 86-237 2-146 (152)
5 KOG0420|consensus 100.0 5E-43 1.1E-47 284.3 14.0 172 61-241 1-175 (184)
6 PLN00172 ubiquitin conjugating 100.0 3E-42 6.5E-47 281.0 17.9 144 89-240 2-146 (147)
7 KOG0425|consensus 100.0 8.5E-42 1.8E-46 273.3 16.8 149 89-238 6-162 (171)
8 PF00179 UQ_con: Ubiquitin-con 100.0 2.8E-39 6.1E-44 260.8 15.0 139 92-236 1-140 (140)
9 KOG0426|consensus 100.0 7.8E-39 1.7E-43 249.6 15.1 150 87-237 3-160 (165)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 5.9E-38 1.3E-42 253.5 16.4 139 91-236 2-141 (141)
11 KOG0424|consensus 100.0 5.9E-38 1.3E-42 248.0 15.6 149 87-240 3-156 (158)
12 smart00212 UBCc Ubiquitin-conj 100.0 5.5E-37 1.2E-41 248.9 17.4 143 91-239 1-144 (145)
13 KOG0418|consensus 100.0 7.6E-36 1.6E-40 245.7 13.7 142 89-238 4-150 (200)
14 KOG0421|consensus 100.0 1.1E-35 2.3E-40 235.1 13.1 146 83-237 24-170 (175)
15 KOG0422|consensus 100.0 1.3E-34 2.8E-39 227.9 14.2 146 89-240 3-148 (153)
16 KOG0416|consensus 100.0 7.5E-32 1.6E-36 218.8 10.1 143 89-241 4-148 (189)
17 KOG0423|consensus 100.0 9.6E-31 2.1E-35 212.8 7.0 144 86-237 8-152 (223)
18 KOG0427|consensus 99.9 1.8E-25 3.9E-30 174.6 12.6 126 81-214 8-135 (161)
19 KOG0894|consensus 99.9 2.5E-24 5.5E-29 180.9 14.2 112 86-205 3-117 (244)
20 KOG0429|consensus 99.9 1.5E-21 3.2E-26 164.8 13.6 142 90-239 21-168 (258)
21 KOG0428|consensus 99.8 1.1E-19 2.5E-24 155.6 9.2 145 85-241 8-155 (314)
22 KOG0895|consensus 99.7 9.6E-18 2.1E-22 167.1 8.0 124 88-212 851-979 (1101)
23 KOG0895|consensus 99.5 1.1E-13 2.3E-18 138.6 12.3 127 79-206 273-405 (1101)
24 KOG0896|consensus 99.3 7.8E-12 1.7E-16 98.6 6.3 115 87-205 4-123 (138)
25 KOG0897|consensus 98.6 3.9E-08 8.5E-13 75.7 3.4 96 136-237 12-111 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.4 1.3E-06 2.7E-11 70.1 7.7 70 133-205 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.1 1.4E-05 3E-10 63.2 7.2 69 131-206 42-118 (121)
28 KOG2391|consensus 97.1 0.0029 6.3E-08 57.7 9.2 76 126-208 57-140 (365)
29 PF08694 UFC1: Ubiquitin-fold 96.7 0.0018 4E-08 52.1 3.5 88 85-177 21-118 (161)
30 PF14462 Prok-E2_E: Prokaryoti 95.2 0.22 4.9E-06 39.4 9.2 96 107-205 13-121 (122)
31 smart00591 RWD domain in RING 95.2 0.11 2.4E-06 38.8 7.3 61 97-158 2-64 (107)
32 PF05773 RWD: RWD domain; Int 95.2 0.12 2.7E-06 38.8 7.5 67 91-159 4-73 (113)
33 PF14457 Prok-E2_A: Prokaryoti 94.1 0.072 1.6E-06 44.2 4.2 62 139-205 57-126 (162)
34 KOG3357|consensus 91.4 0.58 1.3E-05 37.3 5.6 90 83-178 22-122 (167)
35 KOG4018|consensus 85.4 1.8 4E-05 37.3 5.2 59 94-156 8-70 (215)
36 PF14460 Prok-E2_D: Prokaryoti 71.5 5.5 0.00012 33.2 3.8 46 157-212 89-137 (175)
37 PF09765 WD-3: WD-repeat regio 67.7 8.9 0.00019 34.8 4.6 90 87-205 98-188 (291)
38 PF06113 BRE: Brain and reprod 65.3 16 0.00036 33.7 5.8 60 131-202 61-123 (333)
39 KOG0309|consensus 59.9 36 0.00077 35.0 7.4 69 89-159 421-491 (1081)
40 TIGR03737 PRTRC_B PRTRC system 49.5 27 0.00059 30.6 4.3 38 158-205 131-172 (228)
41 PF06113 BRE: Brain and reprod 48.0 22 0.00048 32.9 3.6 26 136-162 307-332 (333)
42 cd00421 intradiol_dioxygenase 44.5 30 0.00066 27.8 3.6 24 134-157 65-89 (146)
43 COG5296 Transcription factor i 42.6 18 0.00038 34.4 2.1 47 19-74 334-380 (521)
44 cd03457 intradiol_dioxygenase_ 42.3 33 0.00072 29.0 3.6 24 134-157 86-109 (188)
45 PF12652 CotJB: CotJB protein; 40.8 57 0.0012 23.7 4.2 33 210-242 24-56 (78)
46 cd03459 3,4-PCD Protocatechuat 34.2 55 0.0012 26.9 3.6 24 134-157 72-100 (158)
47 PF03366 YEATS: YEATS family; 32.0 1.4E+02 0.003 21.8 5.1 42 119-162 2-44 (84)
48 smart00340 HALZ homeobox assoc 31.3 44 0.00095 21.5 2.0 17 87-103 18-34 (44)
49 smart00545 JmjN Small domain f 29.6 50 0.0011 21.1 2.1 20 223-242 13-32 (42)
50 KOG4445|consensus 27.4 69 0.0015 29.4 3.3 25 135-159 45-69 (368)
51 PF15278 Sec3_C_2: Sec3 exocys 26.9 1.3E+02 0.0028 21.8 4.0 51 185-241 8-60 (86)
52 PF13950 Epimerase_Csub: UDP-g 24.0 76 0.0016 21.7 2.4 21 185-205 37-57 (62)
53 PF02375 JmjN: jmjN domain; I 23.6 39 0.00084 20.6 0.7 20 223-242 11-30 (34)
54 PF07809 RTP801_C: RTP801 C-te 23.1 3.6E+02 0.0078 21.2 6.2 60 87-148 18-82 (116)
55 TIGR02423 protocat_alph protoc 22.7 1.1E+02 0.0023 26.1 3.5 24 134-157 96-124 (193)
56 PF09606 Med15: ARC105 or Med1 20.9 32 0.0007 35.5 0.0 24 138-161 717-740 (799)
57 cd03463 3,4-PCD_alpha Protocat 20.7 1.3E+02 0.0027 25.5 3.5 23 135-157 93-120 (185)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-46 Score=305.42 Aligned_cols=146 Identities=31% Similarity=0.627 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccccC
Q psy4609 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINE 167 (242)
Q Consensus 89 ~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~~ 167 (242)
+.+||++|++.|+++++.++++.+.+++|++.|+++| ||.+|||+||+|++.|.||++||++||+|+|.|+||||||+.
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~ 85 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP 85 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence 8899999999999999999999766666999999999 999999999999999999999999999999999999999999
Q ss_pred CCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 168 NGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 168 ~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
+|+||+++|.. +|+|+++|++||.+|+++|.+ ||++||+|.|||++|++|+++|.++||++++.+.+
T Consensus 86 ~G~vCLdIL~~------~WsP~~~l~sILlsl~slL~~-PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 86 SGNVCLDILKD------RWSPVYTLETILLSLQSLLLS-PNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCCChhHHHhC------CCCccccHHHHHHHHHHHHcC-CCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 99999999996 899999999999999999999 99999999999999999999999999999997754
No 2
>KOG0417|consensus
Probab=100.00 E-value=5.5e-46 Score=296.90 Aligned_cols=144 Identities=34% Similarity=0.692 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccccCC
Q psy4609 90 DKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINEN 168 (242)
Q Consensus 90 ~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~~~ 168 (242)
.+||.+|+++|.+++++||++. ++++|++.|+++| ||.+|||+||+|.+.|.||++||+.||+|+|.|+||||||+..
T Consensus 3 ~~RI~kE~~~l~~dp~~~~~~~-~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 3 SKRIIKELQDLLRDPPPGCSAG-PVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred HHHHHHHHHHHhcCCCCCCccC-CCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 4599999999999999999997 7789999999999 9999999999999999999999999999999999999999999
Q ss_pred CcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 169 GDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 169 G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
|.||+++|.. .|+|+++|..||.+|+++|.+ ||++||++.++|++|+.|+.+|+++||+|++.+++
T Consensus 82 G~IclDILk~------~WsPAl~i~~VllsI~sLL~~-PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 82 GRICLDILKD------QWSPALTISKVLLSICSLLSD-PNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred ccchHHhhhc------cCChhhHHHHHHHHHHHHhcC-CCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 9999999987 799999999999999999999 99999999999999999999999999999998876
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=9.9e-43 Score=285.26 Aligned_cols=144 Identities=31% Similarity=0.636 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccccC
Q psy4609 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINE 167 (242)
Q Consensus 89 ~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~~ 167 (242)
+.+||++|+++|.++++.|+.+. +.++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~-~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~ 81 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAE-PDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK 81 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEE-ECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC
Confidence 56899999999999999999995 5678999999999 999999999999999999999999999999999999999999
Q ss_pred CCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccC
Q psy4609 168 NGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEG 240 (242)
Q Consensus 168 ~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g 240 (242)
+|.||+++|.. +|+|+++|++||.+|+++|.+ |++++|+|.+||++|++|++.|.++|++|++.+.
T Consensus 82 ~G~iCl~iL~~------~W~p~~ti~~iL~~i~~ll~~-P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a 147 (152)
T PTZ00390 82 LGRICLDILKD------KWSPALQIRTVLLSIQALLSA-PEPDDPLDTSVADHFKNNRADAEKVAREWNQKYA 147 (152)
T ss_pred CCeEECccCcc------cCCCCCcHHHHHHHHHHHHhC-CCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence 99999999975 899999999999999999999 9999999999999999999999999999998654
No 4
>KOG0419|consensus
Probab=100.00 E-value=6.6e-43 Score=272.32 Aligned_cols=144 Identities=28% Similarity=0.588 Sum_probs=137.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccccc
Q psy4609 86 IFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPN 164 (242)
Q Consensus 86 ~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPn 164 (242)
...+.+||++++++|+++++.|++.. |.++|++.|.++| ||.+|||+||+|++.|.|+++||.+||.|+|++.+||||
T Consensus 2 stpArrrLmrDfkrlqedpp~gisa~-P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 2 STPARRRLMRDFKRLQEDPPAGISAA-PVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CchHHHHHHHHHHHhhcCCCCCccCC-CCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 34677899999999999999999996 6778899999988 999999999999999999999999999999999999999
Q ss_pred ccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHh
Q psy4609 165 INENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEF 237 (242)
Q Consensus 165 V~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~ 237 (242)
||.+|.+|+++|.. .|+|+|++..||.+||+||.+ ||+++|+|.|||.+|.+|+++|+++|+..+-
T Consensus 81 vya~G~iClDiLqN------rWsp~Ydva~ILtsiQslL~d-Pn~~sPaN~eAA~Lf~e~~rey~rrVk~~ve 146 (152)
T KOG0419|consen 81 VYADGSICLDILQN------RWSPTYDVASILTSIQSLLND-PNPNSPANSEAARLFSENKREYERRVKETVE 146 (152)
T ss_pred cCCCCcchHHHHhc------CCCCchhHHHHHHHHHHHhcC-CCCCCcccHHHHHHHhhChHHHHHHHHHHHH
Confidence 99999999999998 899999999999999999999 9999999999999999999999999998754
No 5
>KOG0420|consensus
Probab=100.00 E-value=5e-43 Score=284.34 Aligned_cols=172 Identities=42% Similarity=0.764 Sum_probs=154.6
Q ss_pred hhhHHHHHhhhhccCCCCCCCccccchHHHHHHHHHHHHHHhCCCCCeEEEecC-CCCcee--EEEEEcCCCcccCCCEE
Q psy4609 61 MITLSKKLKMQNEGCDIVDKSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTN-PNHLHE--FTIVISPDEGYWRGGKF 137 (242)
Q Consensus 61 ~~~L~~~l~~~~~~~~~~~~~~~~~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~-~~~l~~--w~~~igp~~tpyegg~f 137 (242)
|++|.+++++++++.++...+.....+.++-||++|+.++ ++|+++++.+++ .+++.. ++++|.|.+|.|.||.|
T Consensus 1 M~~L~~~~~k~~~~~~~~~~~~~~~~s~a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~PdEGyY~gGkf 78 (184)
T KOG0420|consen 1 MIKLFKLKKKKREEEQSRYTSTRKKVSAALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTITPDEGYYQGGKF 78 (184)
T ss_pred CccHHHHHHhhhhhcccccccccccccHHHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEccCcceecCceE
Confidence 7899999877777765433356677788888888888877 589999987776 455555 99999999999999999
Q ss_pred EEEEEcCCCCCCCCCeEEEecccccccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHH
Q psy4609 138 LFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEA 217 (242)
Q Consensus 138 ~~~i~fp~~YP~~pP~V~f~t~i~HPnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eA 217 (242)
+|.+.+|+.||+.||+|+|+|+||||||+.+|.|||+||++ +|+|+.+|.+|+.+|+.+|.+ |+++||+|.||
T Consensus 79 ~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRe------dW~P~lnL~sIi~GL~~LF~e-pn~eDpLN~eA 151 (184)
T KOG0420|consen 79 RFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILRE------DWRPVLNLNSIIYGLQFLFLE-PNPEDPLNKEA 151 (184)
T ss_pred EEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHh------cCccccchHHHHHHHHHHhcc-CCCcccccHHH
Confidence 99999999999999999999999999999999999999998 799999999999999999999 89999999999
Q ss_pred HHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 218 AEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 218 a~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
|+++++|++.|+.+||+.+.+|-+
T Consensus 152 A~~l~~n~e~F~~~Vr~~m~gg~v 175 (184)
T KOG0420|consen 152 AAVLKSNREGFENNVRRAMSGGCV 175 (184)
T ss_pred HHHHHhCHHHHHHHHHHHHhcCcc
Confidence 999999999999999999998753
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=3e-42 Score=281.04 Aligned_cols=144 Identities=35% Similarity=0.669 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccccC
Q psy4609 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINE 167 (242)
Q Consensus 89 ~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~~ 167 (242)
+.+||++|+++|+++++.|+.+. ++++|++.|+++| ||++|||+||.|++.|.||++||++||+|+|.|+||||||+.
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~-~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~ 80 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAG-PSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS 80 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEE-ECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence 35899999999999999999996 5678999999998 999999999999999999999999999999999999999999
Q ss_pred CCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccC
Q psy4609 168 NGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEG 240 (242)
Q Consensus 168 ~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g 240 (242)
+|.||+++|.. +|+|+++|++||.+|+++|.+ |++++|+|.+||++|.+|+++|.++||+|++.++
T Consensus 81 ~G~iCl~il~~------~W~p~~ti~~il~~i~~ll~~-P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 81 NGSICLDILRD------QWSPALTVSKVLLSISSLLTD-PNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred CCEEEcccCcC------CCCCcCcHHHHHHHHHHHHhC-CCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 99999999975 899999999999999999999 8999999999999999999999999999998654
No 7
>KOG0425|consensus
Probab=100.00 E-value=8.5e-42 Score=273.35 Aligned_cols=149 Identities=25% Similarity=0.599 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccccC
Q psy4609 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINE 167 (242)
Q Consensus 89 ~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~~ 167 (242)
+...|++||++|++.+..|+.+.+.+++|++.|.+.| ||++|+|+||.|+..+.||.+||.+||+++|.|.+||||||+
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~ 85 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE 85 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC
Confidence 5567999999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred CCcEEeeCCCCCCCC-------CCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhc
Q psy4609 168 NGDICLSLLRQNSID-------GLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFG 238 (242)
Q Consensus 168 ~G~iCl~~L~~~~~~-------~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~ 238 (242)
+|.||+|||.+.|.| .+.|.|..|+++||.+|.+||.+ ||.++|+|.+||+.|++++++|.++|+++++.
T Consensus 86 ~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~-PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~ 162 (171)
T KOG0425|consen 86 DGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNS-PNDESPANVDAAKEWRENPEEYKKKVRRCVRR 162 (171)
T ss_pred CCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcC-CCCCCccchHHHHHHhhCHHHHHHHHHHHHHH
Confidence 999999999988766 47899999999999999999999 99999999999999999999999999999874
No 8
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=2.8e-39 Score=260.81 Aligned_cols=139 Identities=37% Similarity=0.753 Sum_probs=127.3
Q ss_pred HHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccccCCCc
Q psy4609 92 LLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGD 170 (242)
Q Consensus 92 RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~~~G~ 170 (242)
||++|+++|+++++.|+.+.+.++++++.|+++| ||++|||+||.|+|.|.||++||++||+|+|.|+||||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999876655999999999 899999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Q psy4609 171 ICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLE 236 (242)
Q Consensus 171 iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~ 236 (242)
||+++|..+ .|+|+++|.+||.+|+++|.+ |+.++|+|.+||++|++|+++|.++||+|.
T Consensus 81 icl~~l~~~-----~W~p~~~i~~il~~i~~ll~~-p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPE-----SWSPSYTIESILLSIQSLLSE-PNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTT-----TC-TTSHHHHHHHHHHHHHHS-TCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcc-----cCCcccccccHHHHHHHHHhC-CCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999863 699999999999999999998 899999999999999999999999999984
No 9
>KOG0426|consensus
Probab=100.00 E-value=7.8e-39 Score=249.63 Aligned_cols=150 Identities=25% Similarity=0.521 Sum_probs=144.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccc
Q psy4609 87 FIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNI 165 (242)
Q Consensus 87 s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV 165 (242)
..+++||++||++|..++|.||.+.+.++||++.|.+.| ||++|+|+||+|-.++.||.+||.+||+++|...+|||||
T Consensus 3 ~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNi 82 (165)
T KOG0426|consen 3 GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNI 82 (165)
T ss_pred hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcc
Confidence 468899999999999999999999988999999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCcEEeeCCCCCCCCC-------CCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHh
Q psy4609 166 NENGDICLSLLRQNSIDG-------LGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEF 237 (242)
Q Consensus 166 ~~~G~iCl~~L~~~~~~~-------~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~ 237 (242)
+.+|+||++||...|.|+ +.|+|..+++.||.++.+||.+ ||-++++|.+|+.++++|+.+|.+.|++.++
T Consensus 83 y~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaE-PNdESgANvdA~~mWRe~R~ef~~i~~~lvr 160 (165)
T KOG0426|consen 83 YPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAE-PNDESGANVDACKMWREDREEFEKIAKRLVR 160 (165)
T ss_pred cCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcC-CCcccCcccHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999888775 7899999999999999999999 8999999999999999999999999999876
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=5.9e-38 Score=253.53 Aligned_cols=139 Identities=39% Similarity=0.770 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccccCCC
Q psy4609 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENG 169 (242)
Q Consensus 91 ~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~~~G 169 (242)
+||++|+++|+++++.|+++. +.++++..|+++| ||++|||+||.|+++|.||++||++||.|+|.|++|||||+.+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~-~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAE-PVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEE-ECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence 699999999999999999996 5667899999999 88899999999999999999999999999999999999999999
Q ss_pred cEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Q psy4609 170 DICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLE 236 (242)
Q Consensus 170 ~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~ 236 (242)
.||+++|..+ +|+|+++|.+||.+|+++|.+ |++++|+|.+||.+|++|+++|.++|+.|+
T Consensus 81 ~icl~~l~~~-----~W~p~~~l~~il~~i~~~l~~-p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 81 KICLSILKTH-----GWSPAYTLRTVLLSLQSLLNE-PNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCchhhcCCC-----CcCCcCcHHHHHHHHHHHHhC-CCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 9999999873 599999999999999999997 899999999999999999999999999874
No 11
>KOG0424|consensus
Probab=100.00 E-value=5.9e-38 Score=247.95 Aligned_cols=149 Identities=26% Similarity=0.499 Sum_probs=139.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecC----CCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccc
Q psy4609 87 FIRDKLLIKEVQEMEQNLPNTCKTKFTN----PNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLW 161 (242)
Q Consensus 87 s~~~~RL~~E~~~l~~~~~~gi~v~~~~----~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~ 161 (242)
..+..||+.|-+.+.++.|-|+++.+.. ..|++.|+|.| |+.+|+|+||.|.+++.||++||.+||+++|.+++|
T Consensus 3 ~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~ 82 (158)
T KOG0424|consen 3 GIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLF 82 (158)
T ss_pred chHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCc
Confidence 4568899999999999999999986543 35799999999 999999999999999999999999999999999999
Q ss_pred cccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccC
Q psy4609 162 HPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEG 240 (242)
Q Consensus 162 HPnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g 240 (242)
|||||..|.|||++|.+. .+|+|+.||.+||.+|+.||.+ ||+.+|+|.||...|.+|+.+|+++||.+++.+.
T Consensus 83 HPNVypsgtVcLsiL~e~----~~W~paitikqiL~gIqdLL~~-Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a 156 (158)
T KOG0424|consen 83 HPNVYPSGTVCLSILNEE----KDWRPAITIKQILLGIQDLLDT-PNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYA 156 (158)
T ss_pred CCCcCCCCcEehhhhccc----cCCCchhhHHHHHHHHHHHhcC-CCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhc
Confidence 999999999999999973 4699999999999999999999 9999999999999999999999999999998765
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=5.5e-37 Score=248.94 Aligned_cols=143 Identities=36% Similarity=0.688 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccccCCC
Q psy4609 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENG 169 (242)
Q Consensus 91 ~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~~~G 169 (242)
+||++|+++++++++.|+.+.+.+++++..|++++ ||++|||+||.|.|+|.||++||++||+|+|.+++|||||+.+|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 48999999999999999988544444899999988 89999999999999999999999999999999999999999999
Q ss_pred cEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhcc
Q psy4609 170 DICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGE 239 (242)
Q Consensus 170 ~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~ 239 (242)
.||+++|.. ++|+|+++|.+||.+|+++|.+ |++++|+|.|||++|.+|++.|.++|+++++.+
T Consensus 81 ~icl~~l~~-----~~W~p~~~l~~il~~i~~~l~~-p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~ 144 (145)
T smart00212 81 EICLDILKQ-----EKWSPATTLETVLLSIQSLLSE-PNPDSPLNADAATLYKKNREEFKKKAREWTKKY 144 (145)
T ss_pred CEehhhcCC-----CCCCCCCcHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 999999983 2899999999999999999998 899999999999999999999999999999865
No 13
>KOG0418|consensus
Probab=100.00 E-value=7.6e-36 Score=245.70 Aligned_cols=142 Identities=32% Similarity=0.603 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHhCC---CCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccccc
Q psy4609 89 RDKLLIKEVQEMEQNL---PNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPN 164 (242)
Q Consensus 89 ~~~RL~~E~~~l~~~~---~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPn 164 (242)
+.+||++|.+++..+. ..||.+.+.+ +++.+..+.| ||++|||+||+|.++|.+|++|||+||+|+|.|+|||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn-~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPn 82 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVN-ENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPN 82 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEcc-CChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCC
Confidence 7899999999999887 5789997655 7789999999 999999999999999999999999999999999999999
Q ss_pred cc-CCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhc
Q psy4609 165 IN-ENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFG 238 (242)
Q Consensus 165 V~-~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~ 238 (242)
|+ .+|.||+++|.. .|.+++||+.+|.+||++|+. |++.||.+.+.|++|.+|++.|.+.||-|+..
T Consensus 83 VSs~tGaICLDilkd------~Wa~slTlrtvLislQalL~~-pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~ 150 (200)
T KOG0418|consen 83 VSSQTGAICLDILKD------QWAASLTLRTVLISLQALLCA-PEPKDPQDAVVAEQYVDNYEMFYKTARYWTTE 150 (200)
T ss_pred CCcccccchhhhhhc------ccchhhhHHHHHHHHHHHHcC-CCCCChHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99 699999999987 899999999999999999999 89999999999999999999999999999864
No 14
>KOG0421|consensus
Probab=100.00 E-value=1.1e-35 Score=235.07 Aligned_cols=146 Identities=27% Similarity=0.507 Sum_probs=136.9
Q ss_pred cccchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccc
Q psy4609 83 NKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLW 161 (242)
Q Consensus 83 ~~~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~ 161 (242)
........+||++|+-.|.-...+||++ ||+++|++.|..+| ||.+|+|+|-.|++.+.||.+||+.||.|+|+|+.|
T Consensus 24 v~~~~~V~KRLq~ELm~Lmms~~~gISA-FP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~ 102 (175)
T KOG0421|consen 24 VVDGHSVTKRLQSELMGLMMSNTPGISA-FPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCF 102 (175)
T ss_pred cccCchHHHHHHHHHHHHHhcCCCCccc-CcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeecccc
Confidence 3344567789999999999999999999 89999999999999 999999999999999999999999999999999999
Q ss_pred cccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHh
Q psy4609 162 HPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEF 237 (242)
Q Consensus 162 HPnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~ 237 (242)
|||||..|.|||+||.. .|+..+++++||.+||++|-+ ||..+|+|..||+++. |+++|.+.+.++-+
T Consensus 103 HPNVD~~GnIcLDILkd------KWSa~YdVrTILLSiQSLLGE-PNn~SPLNaqAAelW~-d~~eykk~l~~~Y~ 170 (175)
T KOG0421|consen 103 HPNVDLSGNICLDILKD------KWSAVYDVRTILLSIQSLLGE-PNNSSPLNAQAAELWS-DQEEYKKYLEALYK 170 (175)
T ss_pred CCCccccccchHHHHHH------HHHHHHhHHHHHHHHHHHhCC-CCCCCcchhHHHHHhc-CHHHHHHHHHHHhh
Confidence 99999999999999986 899999999999999999998 9999999999999996 99999999887643
No 15
>KOG0422|consensus
Probab=100.00 E-value=1.3e-34 Score=227.94 Aligned_cols=146 Identities=28% Similarity=0.531 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEEcCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccccCC
Q psy4609 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINEN 168 (242)
Q Consensus 89 ~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~~~ 168 (242)
+.+||++|+.+|+++....+.=-..+++++..|++.+-|..-||..|.|+++|.||.+|||+||+|.|.|+|||||||+.
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~llipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~ 82 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLIPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEK 82 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEecCCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCC
Confidence 56899999999998876543221246789999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccC
Q psy4609 169 GDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEG 240 (242)
Q Consensus 169 G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g 240 (242)
|.||+.++.. ++|.|++.+.+||+.|.+++.+ |+++.|++.|+|..|.+|++.|.++|.++++.+|
T Consensus 83 gqvClPiis~-----EnWkP~T~teqVlqaLi~liN~-P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~ 148 (153)
T KOG0422|consen 83 GQVCLPIISA-----ENWKPATRTEQVLQALIALIND-PEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYS 148 (153)
T ss_pred Cceeeeeeec-----ccccCcccHHHHHHHHHHHhcC-CCccccchhhHHHHHHHCHHHHHHhHHHHHHHhc
Confidence 9999999987 4999999999999999999999 9999999999999999999999999999999775
No 16
>KOG0416|consensus
Probab=99.97 E-value=7.5e-32 Score=218.77 Aligned_cols=143 Identities=23% Similarity=0.486 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccccccc-
Q psy4609 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNIN- 166 (242)
Q Consensus 89 ~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~- 166 (242)
..||+..++..|.. .+..|.+ .++.+.+++|.+ ||.++||+||++++.|.+|++||++.|.|.|.++||||||+
T Consensus 4 ~~rRid~Dv~KL~~---s~yeV~~-ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe 79 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLM---SDYEVTI-INDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDE 79 (189)
T ss_pred cccchhhHHHHHHh---cCCeEEE-ecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchh
Confidence 34678888777753 3456754 346699999999 99999999999999999999999999999999999999999
Q ss_pred CCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 167 ENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 167 ~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
.+|.|||+.+++ .|+|.+.|..|+..+.--|...||+-||+|.|||.+|.++++.|+++||++++.|++
T Consensus 80 ~SGsVCLDViNQ------tWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~ 148 (189)
T KOG0416|consen 80 ASGSVCLDVINQ------TWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYAT 148 (189)
T ss_pred ccCccHHHHHhh------hhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 699999999998 899999999999886554444599999999999999999999999999999998864
No 17
>KOG0423|consensus
Probab=99.96 E-value=9.6e-31 Score=212.75 Aligned_cols=144 Identities=27% Similarity=0.497 Sum_probs=137.0
Q ss_pred chHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccccc
Q psy4609 86 IFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPN 164 (242)
Q Consensus 86 ~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPn 164 (242)
.....+.|.+|++.|...+|.||.| ++++.++...++.| ||.+|||++|+|++.+.+..+||.+||+-.|.|+|||||
T Consensus 8 pp~vik~~~kEl~~l~~~PPdGIKV-~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPN 86 (223)
T KOG0423|consen 8 PPNVIKQLAKELKSLDESPPDGIKV-VVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPN 86 (223)
T ss_pred ChHHHHHHHHHHHhcccCCCCceEE-ecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCC
Confidence 3456778999999999999999999 78889999999999 999999999999999999999999999999999999999
Q ss_pred ccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHh
Q psy4609 165 INENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEF 237 (242)
Q Consensus 165 V~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~ 237 (242)
|-.+|.||.+.|.. +|+|.+.|+.||..|..+|.. |+|++.+|.||.+++.++.++|.++||-++.
T Consensus 87 VaaNGEICVNtLKk------DW~p~LGirHvLltikCLLI~-PnPESALNEeAGkmLLEnYdeYa~rARl~Te 152 (223)
T KOG0423|consen 87 VAANGEICVNTLKK------DWNPSLGIRHVLLTIKCLLIE-PNPESALNEEAGKMLLENYDEYARRARLYTE 152 (223)
T ss_pred cccCceehhhhhhc------ccCcccchhhHhhhhheeeec-CChHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999998 899999999999999999998 9999999999999999999999999998753
No 18
>KOG0427|consensus
Probab=99.93 E-value=1.8e-25 Score=174.58 Aligned_cols=126 Identities=25% Similarity=0.474 Sum_probs=111.7
Q ss_pred CccccchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecc
Q psy4609 81 SSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTK 159 (242)
Q Consensus 81 ~~~~~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~ 159 (242)
+.+.-..++.+|||+|+.+++.++|.|+... ..|++..|.+-+ |.++|.|+|..|.+.+.||+.||++.|+|.|+.+
T Consensus 8 ~rk~ls~~at~RLqKEl~e~q~~pP~G~~~~--v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~ 85 (161)
T KOG0427|consen 8 SRKALSKIATNRLQKELSEWQNNPPTGFKHR--VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGP 85 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCcceee--cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecC
Confidence 3344456788999999999999999999986 458899999988 9999999999999999999999999999999987
Q ss_pred c-ccccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCccc
Q psy4609 160 L-WHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLN 214 (242)
Q Consensus 160 i-~HPnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N 214 (242)
+ .||+|+.||-|||++|.. .|+|++++.+|..+|.+||.+-.....|.+
T Consensus 86 ~P~HPHiYSNGHICL~iL~d------~WsPAmsv~SvClSIlSMLSSs~eKqrP~D 135 (161)
T KOG0427|consen 86 APLHPHIYSNGHICLDILYD------SWSPAMSVQSVCLSILSMLSSSKEKQRPTD 135 (161)
T ss_pred CCCCCceecCCeEEEEeecc------cCCcchhhHHHHHHHHHHHccCccccCCCc
Confidence 4 899999999999999987 899999999999999999987444334543
No 19
>KOG0894|consensus
Probab=99.92 E-value=2.5e-24 Score=180.93 Aligned_cols=112 Identities=25% Similarity=0.447 Sum_probs=104.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecc--ccc
Q psy4609 86 IFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTK--LWH 162 (242)
Q Consensus 86 ~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~--i~H 162 (242)
+..+.+||++||..|.+++.++|.++ +.++|+.+||.++ ||++|||+||.|+.+|.||++||++||-|+..|| .|.
T Consensus 3 ~k~a~kRl~keY~~l~k~Pv~~i~A~-P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFk 81 (244)
T KOG0894|consen 3 SKAAVKRLQKEYRALCKDPVPYIVAR-PNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFK 81 (244)
T ss_pred chHHHHHHHHHHHHHHhCCchhhccC-CCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCcee
Confidence 45788999999999999999999885 8999999999999 9999999999999999999999999999999997 566
Q ss_pred ccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhcc
Q psy4609 163 PNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTD 205 (242)
Q Consensus 163 PnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~ 205 (242)
+| -++|||+...| ++.|+|.|++.+||.+|.++|.+
T Consensus 82 tn----tRLCLSiSDfH---PdsWNP~WsVStILtGLlSFM~e 117 (244)
T KOG0894|consen 82 TN----TRLCLSISDFH---PDSWNPGWSVSTILTGLLSFMTE 117 (244)
T ss_pred cC----ceEEEeccccC---cCcCCCcccHHHHHHHHHHHHhc
Confidence 66 68999999887 99999999999999999999876
No 20
>KOG0429|consensus
Probab=99.87 E-value=1.5e-21 Score=164.78 Aligned_cols=142 Identities=22% Similarity=0.317 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEEcCCCcccCCCEEEEEEEcCCCCCC--CCCeEEEeccccccccc-
Q psy4609 90 DKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNM--APPKVKCLTKLWHPNIN- 166 (242)
Q Consensus 90 ~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~--~pP~V~f~t~i~HPnV~- 166 (242)
...|..||..+.+..-+||+|. |+-++-+.|.++|....|.|.||+|+|+|.+|++||. +-|+|.|.+.+|||+|+
T Consensus 21 ey~llAEf~lV~~ekL~gIyvi-PSyan~l~WFGViFvr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp 99 (258)
T KOG0429|consen 21 EYALLAEFVLVCREKLDGIYVI-PSYANKLLWFGVIFVRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICP 99 (258)
T ss_pred HHHHHHHHHHHHhccCCceEEc-ccccccceEEEEEEEecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCC
Confidence 3467888888888888999995 6767777888888888999999999999999999995 68999999999999999
Q ss_pred CCCcEEeeCCCCCCCCCCCCCCcC-CHHHHHHHHHHHhccCCCCCCc--ccHHHHHHHHHCHHHHHHHHHHHHhcc
Q psy4609 167 ENGDICLSLLRQNSIDGLGWAPTR-KLKDVIWGLNSLFTDLLNFDDP--LNIEAAEMYQKNKELFRERARCLEFGE 239 (242)
Q Consensus 167 ~~G~iCl~~L~~~~~~~~~W~p~~-~l~~vl~~I~~ll~~~p~~~dP--~N~eAa~~~~~d~~~f~~~vr~~~~~~ 239 (242)
.++.+|++-... .|+-.- +|++||..++..|.+ |+..-+ .|+|||.+|.+++++|.++|+++++.+
T Consensus 100 ~skeLdl~raf~------eWRk~ehhiwqvL~ylqriF~d-pd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~s 168 (258)
T KOG0429|consen 100 KSKELDLNRAFP------EWRKEEHHIWQVLVYLQRIFYD-PDVSIDKLINPEAAVLYKKHRDEFRERVQECVKAS 168 (258)
T ss_pred CccceeHhhhhh------hhhccccHHHHHHHHHHHHhcC-cccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 689999988776 697765 899999999999999 665555 599999999999999999999998854
No 21
>KOG0428|consensus
Probab=99.80 E-value=1.1e-19 Score=155.59 Aligned_cols=145 Identities=21% Similarity=0.360 Sum_probs=112.3
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccc
Q psy4609 85 RIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHP 163 (242)
Q Consensus 85 ~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HP 163 (242)
....+.+||++|.++|+ ++...+.. .+-++|+++|+.+| ||.+|-|+||+|+.+|.||.+||++||.+..+|+--.
T Consensus 8 ~KnpaVkRlmkEa~El~-~Ptd~yha-~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGR- 84 (314)
T KOG0428|consen 8 LKNPAVKRLMKEAAELK-DPTDHYHA-QPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGR- 84 (314)
T ss_pred ccCHHHHHHHHHHHHhc-Cchhhhhh-ccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCc-
Confidence 35678899999999998 55444544 57889999999999 9999999999999999999999999999999985211
Q ss_pred cccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHH-HHCHHHHHHHHHHHHh-ccCC
Q psy4609 164 NINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMY-QKNKELFRERARCLEF-GEGI 241 (242)
Q Consensus 164 nV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~-~~d~~~f~~~vr~~~~-~~g~ 241 (242)
.-.+-+|||+|...| ++.|.|+|+|+..|..|..+|-..|+ ..+ ..--| .+.++...++.++|.. +||.
T Consensus 85 -FE~nkKiCLSISgyH---PEtWqPSWSiRTALlAlIgFmPt~p~--GAl---GSlDYpp~ERr~LAkkS~e~~ck~cGs 155 (314)
T KOG0428|consen 85 -FEVNKKICLSISGYH---PETWQPSWSIRTALLALIGFMPTKPE--GAL---GSLDYPPEERRALAKKSQEFCCKGCGS 155 (314)
T ss_pred -eeeCceEEEEecCCC---ccccCcchhHHHHHHHHHccccCCCC--Ccc---ccCcCCHHHHHHHHHhhcccCccccCC
Confidence 113457999999886 99999999999999999998855332 111 00112 3456777777777755 5764
No 22
>KOG0895|consensus
Probab=99.72 E-value=9.6e-18 Score=167.15 Aligned_cols=124 Identities=23% Similarity=0.425 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecc--ccccc
Q psy4609 88 IRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTK--LWHPN 164 (242)
Q Consensus 88 ~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~--i~HPn 164 (242)
.-.+..+.|++-|..+.|.||+|+. .++.+....+.| |+.+|||..|.|.|+|.||++||.+||.|...+. .++||
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~vr~-~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npn 929 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPLSLPSGIFVRA-YEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPN 929 (1101)
T ss_pred HHHHHHHHHHHhhhccCCCceEEEe-chHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcc
Confidence 5566778888899999999999985 446566566666 9999999999999999999999999999999986 79999
Q ss_pred ccCCCcEEeeCCCCC-CCCCCCCCCcCCHHHHHHHHHHHhc-cCCCCCCc
Q psy4609 165 INENGDICLSLLRQN-SIDGLGWAPTRKLKDVIWGLNSLFT-DLLNFDDP 212 (242)
Q Consensus 165 V~~~G~iCl~~L~~~-~~~~~~W~p~~~l~~vl~~I~~ll~-~~p~~~dP 212 (242)
.|++|+||+++|++| |.+.+-|+|+-+|.+||.+||.|+. +.|.++.|
T Consensus 930 ly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~ne~ 979 (1101)
T KOG0895|consen 930 LYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFNEA 979 (1101)
T ss_pred cccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccccCcc
Confidence 999999999999998 7777889999999999999999964 34544444
No 23
>KOG0895|consensus
Probab=99.51 E-value=1.1e-13 Score=138.63 Aligned_cols=127 Identities=28% Similarity=0.495 Sum_probs=110.9
Q ss_pred CCCccccchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEe
Q psy4609 79 DKSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCL 157 (242)
Q Consensus 79 ~~~~~~~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~ 157 (242)
+...+.......+|+++|++-+.+++|.|+.++ +.+..+....++| |+.+|||++|+|.|+|.||..||..||.|+++
T Consensus 273 ~~~~k~hs~~~skrv~ke~~llskdlpEgifvr-p~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~l 351 (1101)
T KOG0895|consen 273 GKSSKPHSKNWSKKVAKELKLLSKDLPEGIFVR-PDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYL 351 (1101)
T ss_pred CCCCCccchhhHHHHHHHhhhhcccCCCCcccc-ccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEe
Confidence 444555667788999999999999999999996 5666676666666 99999999999999999999999999999999
Q ss_pred cc---cccccccCCCcEEeeCCCCCCC-CCCCCCCc-CCHHHHHHHHHHHhccC
Q psy4609 158 TK---LWHPNINENGDICLSLLRQNSI-DGLGWAPT-RKLKDVIWGLNSLFTDL 206 (242)
Q Consensus 158 t~---i~HPnV~~~G~iCl~~L~~~~~-~~~~W~p~-~~l~~vl~~I~~ll~~~ 206 (242)
|. .+.||.|.+|+||+++|..+.+ --+.|+|. .+|.++|.+|+.++...
T Consensus 352 t~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 352 TGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred eccceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 87 7999999999999999998844 44789998 69999999999998774
No 24
>KOG0896|consensus
Probab=99.27 E-value=7.8e-12 Score=98.62 Aligned_cols=115 Identities=18% Similarity=0.272 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCC-eEEEecCCCCc--eeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccc
Q psy4609 87 FIRDKLLIKEVQEMEQNLPNT-CKTKFTNPNHL--HEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWH 162 (242)
Q Consensus 87 s~~~~RL~~E~~~l~~~~~~g-i~v~~~~~~~l--~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~H 162 (242)
..+..||.+|+.+-++...++ ++.-+.+.+++ ..|...| ||+.|+|++-+|.++|.+.++||..||+|+|.+++--
T Consensus 4 vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm 83 (138)
T KOG0896|consen 4 VPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINM 83 (138)
T ss_pred cccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeee
Confidence 456778999988887766544 55555565554 4899888 9999999999999999999999999999999999998
Q ss_pred cccc-CCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhcc
Q psy4609 163 PNIN-ENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTD 205 (242)
Q Consensus 163 PnV~-~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~ 205 (242)
+.|+ .+|.|--.-+.. -++|+-.++++.||..+.-++..
T Consensus 84 ~gvn~~~g~Vd~~~i~~----L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 84 NGVNSSNGVVDPRDITV----LARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred cccccCCCccCccccch----hhcccccchhhHHHHhhhHHHHH
Confidence 9888 566665322221 12899999999999999876654
No 25
>KOG0897|consensus
Probab=98.58 E-value=3.9e-08 Score=75.71 Aligned_cols=96 Identities=19% Similarity=0.401 Sum_probs=69.4
Q ss_pred EEEEEEEcCCCCCCCCCeEEEecccccc-cccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccC-CCCCCcc
Q psy4609 136 KFLFSVSVPEEYNMAPPKVKCLTKLWHP-NINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDL-LNFDDPL 213 (242)
Q Consensus 136 ~f~~~i~fp~~YP~~pP~V~f~t~i~HP-nV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~-p~~~dP~ 213 (242)
...+.+.|+++||+.||.++...|+-.- -|-.+|+||+.+|+.+ +|+.+++++.++++|.+++-.. .-...|+
T Consensus 12 ~ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~q-----gwssay~Ve~vi~qiaatlVkG~~ri~~~a 86 (122)
T KOG0897|consen 12 NILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQ-----GWSSAYEVERVIMQIAATLVKGGARIEFPA 86 (122)
T ss_pred eeEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccc-----cccchhhHHHHHHHHHHHhhccceeEecCc
Confidence 3567788999999999999977654322 2226899999999986 9999999999999999998652 1234466
Q ss_pred cHHHHHHH--HHCHHHHHHHHHHHHh
Q psy4609 214 NIEAAEMY--QKNKELFRERARCLEF 237 (242)
Q Consensus 214 N~eAa~~~--~~d~~~f~~~vr~~~~ 237 (242)
+.+.. +| ..-.+.|...++.-.+
T Consensus 87 ~k~sk-~~s~~qa~~sfksLv~~hek 111 (122)
T KOG0897|consen 87 EKSSK-LYSHSQAQQSFKSLVQIHEK 111 (122)
T ss_pred chhhh-HhhHHHHHHHHHHHHHHHHh
Confidence 55543 55 3344667766665443
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.39 E-value=1.3e-06 Score=70.08 Aligned_cols=70 Identities=23% Similarity=0.456 Sum_probs=60.0
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEeccc---ccccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhcc
Q psy4609 133 RGGKFLFSVSVPEEYNMAPPKVKCLTKL---WHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTD 205 (242)
Q Consensus 133 egg~f~~~i~fp~~YP~~pP~V~f~t~i---~HPnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~ 205 (242)
.|+.|.+.|.+|+.||..||.|....+. +-|||+.+|.+|+.-- +...+.|.|.-.+.++|.....+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~---~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDE---ELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecC---CcccCccCHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999998654 7899999999999422 11234899999999999999999986
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.07 E-value=1.4e-05 Score=63.21 Aligned_cols=69 Identities=25% Similarity=0.572 Sum_probs=50.7
Q ss_pred ccCCCEEE--EEEEcCCCCCCCCCeEEEeccc-----ccccccCCCcEEeeCCCCCCCCCCCCCC-cCCHHHHHHHHHHH
Q psy4609 131 YWRGGKFL--FSVSVPEEYNMAPPKVKCLTKL-----WHPNINENGDICLSLLRQNSIDGLGWAP-TRKLKDVIWGLNSL 202 (242)
Q Consensus 131 pyegg~f~--~~i~fp~~YP~~pP~V~f~t~i-----~HPnV~~~G~iCl~~L~~~~~~~~~W~p-~~~l~~vl~~I~~l 202 (242)
.|.|..|. +.|.+|.+||..||.|...... -+.+|+.+|+|++..|. +|++ ..+|.+++..+...
T Consensus 42 ~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~-------~W~~~~s~L~~lv~~l~~~ 114 (121)
T PF05743_consen 42 TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ-------NWNPPSSNLVDLVQELQAV 114 (121)
T ss_dssp CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH-------T--TTTS-HHHHHHHHHHC
T ss_pred ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc-------cCCCCCCCHHHHHHHHHHH
Confidence 47777774 6677999999999999886432 24499999999999997 6887 67999999999999
Q ss_pred hccC
Q psy4609 203 FTDL 206 (242)
Q Consensus 203 l~~~ 206 (242)
|.+.
T Consensus 115 F~~~ 118 (121)
T PF05743_consen 115 FSEE 118 (121)
T ss_dssp CCHS
T ss_pred HhHc
Confidence 9874
No 28
>KOG2391|consensus
Probab=97.13 E-value=0.0029 Score=57.67 Aligned_cols=76 Identities=20% Similarity=0.335 Sum_probs=60.2
Q ss_pred cCCCcccCCCEEEE--EEEcCCCCCCCCCeEEEecc-----cccccccCCCcEEeeCCCCCCCCCCCCCCc-CCHHHHHH
Q psy4609 126 SPDEGYWRGGKFLF--SVSVPEEYNMAPPKVKCLTK-----LWHPNINENGDICLSLLRQNSIDGLGWAPT-RKLKDVIW 197 (242)
Q Consensus 126 gp~~tpyegg~f~~--~i~fp~~YP~~pP~V~f~t~-----i~HPnV~~~G~iCl~~L~~~~~~~~~W~p~-~~l~~vl~ 197 (242)
|---.+|.|..|.+ .|.+.+.||..||.+..... --|-+|+.+|.|.|..|. +|.|. .+|..+|.
T Consensus 57 GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh-------~W~~pssdLv~Liq 129 (365)
T KOG2391|consen 57 GTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH-------NWDPPSSDLVGLIQ 129 (365)
T ss_pred CcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc-------cCCCccchHHHHHH
Confidence 33334688888765 56689999999999977632 238999999999999997 69765 58999999
Q ss_pred HHHHHhccCCC
Q psy4609 198 GLNSLFTDLLN 208 (242)
Q Consensus 198 ~I~~ll~~~p~ 208 (242)
-|.+.|.+.|.
T Consensus 130 ~l~a~f~~~pP 140 (365)
T KOG2391|consen 130 ELIAAFSEDPP 140 (365)
T ss_pred HHHHHhcCCCc
Confidence 99999988543
No 29
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=96.67 E-value=0.0018 Score=52.10 Aligned_cols=88 Identities=13% Similarity=0.081 Sum_probs=40.4
Q ss_pred cchHHHHHHHHHHHHHHhC------CC-CCeEEEecCCCCceeEEEEE--cCCCcccCCCEEEEEEEcCCCCCCCCCeEE
Q psy4609 85 RIFIRDKLLIKEVQEMEQN------LP-NTCKTKFTNPNHLHEFTIVI--SPDEGYWRGGKFLFSVSVPEEYNMAPPKVK 155 (242)
Q Consensus 85 ~~s~~~~RL~~E~~~l~~~------~~-~gi~v~~~~~~~l~~w~~~i--gp~~tpyegg~f~~~i~fp~~YP~~pP~V~ 155 (242)
....-..||..||..|-+. .. .-+.++ ++..=..|.... --..--| .|.+++.+|..||..||.+.
T Consensus 21 d~~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~le--sn~~GT~W~GkCW~~h~l~kY---EF~~eFdIP~tYP~t~pEi~ 95 (161)
T PF08694_consen 21 DGDLWVQRLKEEYQALIKYVENNKENDNDWFRLE--SNKEGTRWFGKCWYIHNLLKY---EFDLEFDIPVTYPTTAPEIA 95 (161)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTT---EEEE--E-TTSSEEEEEEEEEETTEEE---EEEEEEE--TTTTTS----B
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcccccCCeEEec--cCCCCCccccEEEEEeeeeeE---EEeeecCCCccCCCCCccee
Confidence 3356678999999988642 11 123332 222223333322 1222223 36677888999999999997
Q ss_pred Eecc-cccccccCCCcEEeeCCC
Q psy4609 156 CLTK-LWHPNINENGDICLSLLR 177 (242)
Q Consensus 156 f~t~-i~HPnV~~~G~iCl~~L~ 177 (242)
...- --..-.|-.|+||++.-.
T Consensus 96 lPeLdGKTaKMYRGGkIClt~HF 118 (161)
T PF08694_consen 96 LPELDGKTAKMYRGGKICLTDHF 118 (161)
T ss_dssp -GGGTTT-SSBCCCCBB---TTH
T ss_pred ccccCCchhhhhcCceEeeeccc
Confidence 6421 112334568999998744
No 30
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=95.19 E-value=0.22 Score=39.37 Aligned_cols=96 Identities=14% Similarity=0.178 Sum_probs=62.4
Q ss_pred CeEEEecCCCCceeEEEEE--cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccccCCCcE--EeeCCC-----
Q psy4609 107 TCKTKFTNPNHLHEFTIVI--SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDI--CLSLLR----- 177 (242)
Q Consensus 107 gi~v~~~~~~~l~~w~~~i--gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~~~G~i--Cl~~L~----- 177 (242)
|+..+...+.. ..|.++- .-+.|.|.+..-.+-|.+|+.||..+|.+.+..|-.... ..|.| |-+...
T Consensus 13 g~~~E~v~eg~-~~~lii~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~ 89 (122)
T PF14462_consen 13 GLRWETVTEGG-RRWLIIKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGR 89 (122)
T ss_pred CceEEEEEeCC-ccEEEEeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCe
Confidence 45554443333 3455544 367888999999999999999999999888766532211 12223 332211
Q ss_pred ---CCCCCCCCCCCcC-CHHHHHHHHHHHhcc
Q psy4609 178 ---QNSIDGLGWAPTR-KLKDVIWGLNSLFTD 205 (242)
Q Consensus 178 ---~~~~~~~~W~p~~-~l~~vl~~I~~ll~~ 205 (242)
.+|.....|+|.. +|.++|..|...|..
T Consensus 90 ~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~~ 121 (122)
T PF14462_consen 90 TWQRWSRHNNPWRPGVDDLWTHLARVEHALAK 121 (122)
T ss_pred eeeeecCCCCCCCCCCCcHHHHHHHHHHHHhh
Confidence 1244455799987 899999988887753
No 31
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.17 E-value=0.11 Score=38.79 Aligned_cols=61 Identities=21% Similarity=0.364 Sum_probs=35.8
Q ss_pred HHHHHhCCCCCeEEEecCCCCceeEEEEEcCCCc--ccCCCEEEEEEEcCCCCCCCCCeEEEec
Q psy4609 97 VQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEG--YWRGGKFLFSVSVPEEYNMAPPKVKCLT 158 (242)
Q Consensus 97 ~~~l~~~~~~gi~v~~~~~~~l~~w~~~igp~~t--pyegg~f~~~i~fp~~YP~~pP~V~f~t 158 (242)
+..|+.-.+..+.. ..+......+.+.+.+... .-..-.+.+.|.||++||..+|.|.+.+
T Consensus 2 ieaL~sIy~~~~~~-~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 2 LEALESIYPEDFEV-IDEDARIPEITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred hHHHHhhccceeEE-ecCCCCccEEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCCeEEEC
Confidence 44455445544433 2222222245555543322 2334568899999999999999998764
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.15 E-value=0.12 Score=38.85 Aligned_cols=67 Identities=10% Similarity=0.174 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEEc---CCCcccCCCEEEEEEEcCCCCCCCCCeEEEecc
Q psy4609 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS---PDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTK 159 (242)
Q Consensus 91 ~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~ig---p~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~ 159 (242)
.+.+.|+..|+.-.+..+ + ......-..+.+.+. ...+.-....+.+.|.||++||..||.|.+.++
T Consensus 4 e~~~~EieaL~sIy~~~~-~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-I-EIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-S-SSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCc-c-ccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 346788888887666555 1 123333445556552 223344456899999999999999999987653
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=94.11 E-value=0.072 Score=44.21 Aligned_cols=62 Identities=21% Similarity=0.366 Sum_probs=50.1
Q ss_pred EEEEcCCCCCCCCCeEEEecccc---cccccCC-----CcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhcc
Q psy4609 139 FSVSVPEEYNMAPPKVKCLTKLW---HPNINEN-----GDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTD 205 (242)
Q Consensus 139 ~~i~fp~~YP~~pP~V~f~t~i~---HPnV~~~-----G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~ 205 (242)
+.|.|+.+||..+|.|.+....| +||++.. ..+|+.--..+ .|.++.++..+|..|..-|..
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~-----e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWS-----EWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHH-----HhhhccCHHHHHHHHHHHHHH
Confidence 45899999999999888776533 5777755 67999887665 899999999999999877654
No 34
>KOG3357|consensus
Probab=91.39 E-value=0.58 Score=37.33 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=50.9
Q ss_pred cccchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEEcCCCcccCCC----------EEEEEEEcCCCCCCCCC
Q psy4609 83 NKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGG----------KFLFSVSVPEEYNMAPP 152 (242)
Q Consensus 83 ~~~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~igp~~tpyegg----------~f~~~i~fp~~YP~~pP 152 (242)
.+.-..-.+||..||+.|... ++-..+++-.|+.+.--+.+|-|-|. .|.+++.+|-.||-..|
T Consensus 22 prd~~~wvqrlkeey~sli~y------vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tap 95 (167)
T KOG3357|consen 22 PRDGDLWVQRLKEEYQSLIAY------VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAP 95 (167)
T ss_pred CccchHHHHHHHHHHHHHHHH------HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCc
Confidence 344556678999999988532 11011112223333323555655552 35566778999999999
Q ss_pred eEEEecc-cccccccCCCcEEeeCCCC
Q psy4609 153 KVKCLTK-LWHPNINENGDICLSLLRQ 178 (242)
Q Consensus 153 ~V~f~t~-i~HPnV~~~G~iCl~~L~~ 178 (242)
.+....- --.--.+..|.||+.--..
T Consensus 96 eialpeldgktakmyrggkiclt~hfk 122 (167)
T KOG3357|consen 96 EIALPELDGKTAKMYRGGKICLTDHFK 122 (167)
T ss_pred cccccccCchhhhhhcCceEeeccccc
Confidence 8865310 0011223589999975443
No 35
>KOG4018|consensus
Probab=85.41 E-value=1.8 Score=37.33 Aligned_cols=59 Identities=22% Similarity=0.425 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCCCe-EEEecCCCCceeEEEEEcCCCc---ccCCCEEEEEEEcCCCCCCCCCeEEE
Q psy4609 94 IKEVQEMEQNLPNTC-KTKFTNPNHLHEFTIVISPDEG---YWRGGKFLFSVSVPEEYNMAPPKVKC 156 (242)
Q Consensus 94 ~~E~~~l~~~~~~gi-~v~~~~~~~l~~w~~~igp~~t---pyegg~f~~~i~fp~~YP~~pP~V~f 156 (242)
.+|+.-|....+.-. .+ .+.+ ...+.+.|....+ -|.| .+.+.+.++++||..+|.|.+
T Consensus 8 e~E~EaLeSIY~de~~~i--~~~~-~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 8 EEELEALESIYPDEFKHI--NSED-PPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred HHHHHHHHHhccchhhhh--hccC-CccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceec
Confidence 466777776666554 33 2333 3337777754433 3333 799999999999999999943
No 36
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=71.54 E-value=5.5 Score=33.21 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=28.0
Q ss_pred ecccccc---cccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCc
Q psy4609 157 LTKLWHP---NINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDP 212 (242)
Q Consensus 157 ~t~i~HP---nV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP 212 (242)
.|++||. ||+.+|.||+.-... |.......+..+...|.+ .....+
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~~---------P~~~~~~~i~~we~~Ff~-S~ftH~ 137 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNSL---------PKISTLASIEAWEDAFFN-SPFTHP 137 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCcC---------CCccCHHHHHHHHHHHhC-CCccCC
Confidence 4567764 999999999977443 333334456666655544 233444
No 37
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=67.70 E-value=8.9 Score=34.77 Aligned_cols=90 Identities=17% Similarity=0.324 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEEcCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccccccc
Q psy4609 87 FIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNIN 166 (242)
Q Consensus 87 s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~ 166 (242)
+....+|.+|+.++..+.. +++. -++++....+.+.... -...++|.+|.+||.++|.+...-|+
T Consensus 98 ~~~ys~ll~EIe~IGW~kl--~~i~--~d~~ls~i~l~~~D~~-----R~H~l~l~l~~~yp~~~p~~~~~~P~------ 162 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKL--VQIQ--FDDDLSTIKLKIFDSS-----RQHYLELKLPSNYPFEPPSCSLDLPI------ 162 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCC--EEEE--E-CCCSEEEEEEETTC-----EEEEEEEETTTTTTTSEEEECS-TTS------
T ss_pred cHHHHHHHHHHHHhccccc--eEEe--cCCCccEEEEEEEcCC-----ceEEEEEEECCCCCCCCceeeCCCCc------
Confidence 5556779999999975543 4443 2355666666663321 35678999999999999976433221
Q ss_pred CCCcEEeeCCCCCCCCCCCCCC-cCCHHHHHHHHHHHhcc
Q psy4609 167 ENGDICLSLLRQNSIDGLGWAP-TRKLKDVIWGLNSLFTD 205 (242)
Q Consensus 167 ~~G~iCl~~L~~~~~~~~~W~p-~~~l~~vl~~I~~ll~~ 205 (242)
.+ .. .|.+ ..+|.+|+...+.++..
T Consensus 163 -------~~-~~------~w~~~~ssL~~v~~qF~~~le~ 188 (291)
T PF09765_consen 163 -------PF-SL------SWSPSQSSLKDVVQQFQEALES 188 (291)
T ss_dssp --------H-HH------HHHCHT-SHHHHHHHHHHHHHH
T ss_pred -------ch-hh------hhcccccCHHHHHHHHHHHHHH
Confidence 11 11 5888 66888888888777665
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=65.31 E-value=16 Score=33.69 Aligned_cols=60 Identities=23% Similarity=0.377 Sum_probs=43.1
Q ss_pred ccCCCEEEEEEEcCCCCCCCCCeEEEe-cccccccccCCCcEEeeCCCCCCCCCCCCCCcC--CHHHHHHHHHHH
Q psy4609 131 YWRGGKFLFSVSVPEEYNMAPPKVKCL-TKLWHPNINENGDICLSLLRQNSIDGLGWAPTR--KLKDVIWGLNSL 202 (242)
Q Consensus 131 pyegg~f~~~i~fp~~YP~~pP~V~f~-t~i~HPnV~~~G~iCl~~L~~~~~~~~~W~p~~--~l~~vl~~I~~l 202 (242)
||.|-..+-+|.|...||..||-+.|- ..-|+|.... +..|. +|++.- .+..++..+...
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~-----l~~L~-------~Wd~~dp~~Ll~li~EL~~~ 123 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK-----LPSLV-------NWDPSDPNCLLNLISELRQL 123 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh-----cchhh-------cCCCCCchHHHHHHHHHHHH
Confidence 788889999999999999999999996 4458885322 23343 687754 555666555433
No 39
>KOG0309|consensus
Probab=59.90 E-value=36 Score=35.01 Aligned_cols=69 Identities=12% Similarity=0.074 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEEcCCCcccCCCE-EEEEEEcCCCCCC-CCCeEEEecc
Q psy4609 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGK-FLFSVSVPEEYNM-APPKVKCLTK 159 (242)
Q Consensus 89 ~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~igp~~tpyegg~-f~~~i~fp~~YP~-~pP~V~f~t~ 159 (242)
.-+.|.+|+.-|-...+ .+.++..+-.+ ..-.+.+-.+..+-+|-+ .++.|.||.+||. .+|.+.|..+
T Consensus 421 ~pQnLgeE~S~Ig~k~~-nV~fEkidva~-Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 421 LPQNLGEEFSLIGVKIR-NVNFEKIDVAD-RSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhHHhHHhHhhcccc-ccceEeecccc-ceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 34568888887765443 23232112111 122333333333334434 4789999999999 5799998754
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=49.51 E-value=27 Score=30.59 Aligned_cols=38 Identities=34% Similarity=0.596 Sum_probs=26.2
Q ss_pred cccccc---cccCCCcEEeeCCCCCCCCCCCCCCcC-CHHHHHHHHHHHhcc
Q psy4609 158 TKLWHP---NINENGDICLSLLRQNSIDGLGWAPTR-KLKDVIWGLNSLFTD 205 (242)
Q Consensus 158 t~i~HP---nV~~~G~iCl~~L~~~~~~~~~W~p~~-~l~~vl~~I~~ll~~ 205 (242)
|++||+ ||+.+|.||+.-.. .|.. ++.+ +......|.+
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---------~P~~~~~~~-i~~we~~FF~ 172 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---------LPDRPTVAN-ISAWEDAFFS 172 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---------CCCCcCHHH-HHHHHHHHhC
Confidence 556765 99999999996643 3433 6666 7777777654
No 41
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=47.99 E-value=22 Score=32.88 Aligned_cols=26 Identities=23% Similarity=0.602 Sum_probs=22.3
Q ss_pred EEEEEEEcCCCCCCCCCeEEEeccccc
Q psy4609 136 KFLFSVSVPEEYNMAPPKVKCLTKLWH 162 (242)
Q Consensus 136 ~f~~~i~fp~~YP~~pP~V~f~t~i~H 162 (242)
.|.++|.+|..||..+|.++|++ +||
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 38888999999999999999986 454
No 42
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=44.48 E-value=30 Score=27.78 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=22.1
Q ss_pred CCEEEEEEEcCCCCC-CCCCeEEEe
Q psy4609 134 GGKFLFSVSVPEEYN-MAPPKVKCL 157 (242)
Q Consensus 134 gg~f~~~i~fp~~YP-~~pP~V~f~ 157 (242)
.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 389999999999999 999999986
No 43
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Probab=42.65 E-value=18 Score=34.35 Aligned_cols=47 Identities=23% Similarity=0.238 Sum_probs=36.1
Q ss_pred hhhhhcccCCCCccceeccccCCCCCCCccccccccccceeehhhHHHHHhhhhcc
Q psy4609 19 PALMSRRANHPNIHTLVHHRLDYRPHPSRQIFGYGAALWVFNMITLSKKLKMQNEG 74 (242)
Q Consensus 19 ~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 74 (242)
-..+.||+|+.-|..+|+++.++.|+||.-+. --..|+.|++.....
T Consensus 334 ~d~~~~~LSdkeis~~V~~k~e~~~k~sNvi~---------eKt~Lrqkrq~A~e~ 380 (521)
T COG5296 334 VDTMGRRLSDKEISKMVACKDEVHPKRSNVIH---------EKTELRQKRQRAIEL 380 (521)
T ss_pred HHHhCCcCchhHHHHHHHHHHhcCccchhHHH---------HHHHHHHHHHHHHHc
Confidence 35688999999999999999999999997766 335566665444433
No 44
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=42.27 E-value=33 Score=29.02 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=22.3
Q ss_pred CCEEEEEEEcCCCCCCCCCeEEEe
Q psy4609 134 GGKFLFSVSVPEEYNMAPPKVKCL 157 (242)
Q Consensus 134 gg~f~~~i~fp~~YP~~pP~V~f~ 157 (242)
.|.|.|+-.+|--||..+|.|.|.
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEE
Confidence 489999999999999999999986
No 45
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=40.77 E-value=57 Score=23.67 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=29.3
Q ss_pred CCcccHHHHHHHHHCHHHHHHHHHHHHhccCCC
Q psy4609 210 DDPLNIEAAEMYQKNKELFRERARCLEFGEGII 242 (242)
Q Consensus 210 ~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~~ 242 (242)
..|-+.+|-..|..-.+...+..+++.+.+|+|
T Consensus 24 THP~d~~Al~~y~~~~~~~~~l~~~Ye~~yGPL 56 (78)
T PF12652_consen 24 THPDDQEALEYYNEYSKQRKQLKKEYEKRYGPL 56 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 358899999999888899999999999999986
No 46
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=34.24 E-value=55 Score=26.89 Aligned_cols=24 Identities=21% Similarity=0.526 Sum_probs=21.8
Q ss_pred CCEEEEEEEcCCCCC-----CCCCeEEEe
Q psy4609 134 GGKFLFSVSVPEEYN-----MAPPKVKCL 157 (242)
Q Consensus 134 gg~f~~~i~fp~~YP-----~~pP~V~f~ 157 (242)
.|.|.|.-.+|--|| ..||.|.|.
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 389999999999999 899999886
No 47
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=32.02 E-value=1.4e+02 Score=21.79 Aligned_cols=42 Identities=10% Similarity=0.059 Sum_probs=26.2
Q ss_pred eeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccc
Q psy4609 119 HEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWH 162 (242)
Q Consensus 119 ~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~H 162 (242)
+.|.+.+ ++.+.-...-+=++...+.+.|+. |...+..+.|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 6799988 555544455566788888899887 66666655443
No 48
>smart00340 HALZ homeobox associated leucin zipper.
Probab=31.33 E-value=44 Score=21.50 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHhC
Q psy4609 87 FIRDKLLIKEVQEMEQN 103 (242)
Q Consensus 87 s~~~~RL~~E~~~l~~~ 103 (242)
+--++||++|+++|...
T Consensus 18 teeNrRL~ke~~eLral 34 (44)
T smart00340 18 TEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44578999999999854
No 49
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=29.65 E-value=50 Score=21.07 Aligned_cols=20 Identities=20% Similarity=0.125 Sum_probs=18.0
Q ss_pred HCHHHHHHHHHHHHhccCCC
Q psy4609 223 KNKELFRERARCLEFGEGII 242 (242)
Q Consensus 223 ~d~~~f~~~vr~~~~~~g~~ 242 (242)
.|+-.|.++++..+..+||+
T Consensus 13 ~Dp~~yi~~i~~~~~~yGi~ 32 (42)
T smart00545 13 KDPLAYISKIRPQAEKYGIC 32 (42)
T ss_pred HCHHHHHHHHHHHHhhCCEE
Confidence 58999999999999999984
No 50
>KOG4445|consensus
Probab=27.37 E-value=69 Score=29.40 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.5
Q ss_pred CEEEEEEEcCCCCCCCCCeEEEecc
Q psy4609 135 GKFLFSVSVPEEYNMAPPKVKCLTK 159 (242)
Q Consensus 135 g~f~~~i~fp~~YP~~pP~V~f~t~ 159 (242)
-.+.+.+..++.||...|+|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4788999999999999999998866
No 51
>PF15278 Sec3_C_2: Sec3 exocyst complex subunit
Probab=26.89 E-value=1.3e+02 Score=21.82 Aligned_cols=51 Identities=10% Similarity=0.180 Sum_probs=33.1
Q ss_pred CCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHH--CHHHHHHHHHHHHhccCC
Q psy4609 185 GWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQK--NKELFRERARCLEFGEGI 241 (242)
Q Consensus 185 ~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~--d~~~f~~~vr~~~~~~g~ 241 (242)
.|+-..++++++..+...|.. .......++++. ..+.-.....++++||..
T Consensus 8 ~W~~~~~~~~~~~~~~~S~~~------s~~~~VE~L~~~~~~~~~i~~~L~D~~~GC~s 60 (86)
T PF15278_consen 8 DWNEEDTFKDNQQQTEFSFNE------SMISNVENLFRQKMQAQNIQSQLQDCIAGCDS 60 (86)
T ss_pred ccCCcchHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 799999999999888766654 333333444433 335555667777777753
No 52
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=23.97 E-value=76 Score=21.72 Aligned_cols=21 Identities=29% Similarity=0.538 Sum_probs=13.9
Q ss_pred CCCCcCCHHHHHHHHHHHhcc
Q psy4609 185 GWAPTRKLKDVIWGLNSLFTD 205 (242)
Q Consensus 185 ~W~p~~~l~~vl~~I~~ll~~ 205 (242)
+|.|.++|+++|.....-...
T Consensus 37 gW~p~~~L~~~i~~~w~W~~~ 57 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQKK 57 (62)
T ss_dssp ----SSSHHHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHH
Confidence 899999999999887776554
No 53
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=23.55 E-value=39 Score=20.58 Aligned_cols=20 Identities=15% Similarity=-0.041 Sum_probs=16.7
Q ss_pred HCHHHHHHHHHHHHhccCCC
Q psy4609 223 KNKELFRERARCLEFGEGII 242 (242)
Q Consensus 223 ~d~~~f~~~vr~~~~~~g~~ 242 (242)
+|+-.|.++++.+...+||.
T Consensus 11 ~dp~~yi~~i~~~g~~~Gi~ 30 (34)
T PF02375_consen 11 KDPIKYISSIEPEGEKYGIC 30 (34)
T ss_dssp S-HHHHHHHHHHTTGGGSEE
T ss_pred hCHHHHHHHHHHHHHHCCEE
Confidence 48899999999999999973
No 54
>PF07809 RTP801_C: RTP801 C-terminal region; InterPro: IPR012918 The members of this family are sequences similar to the C-terminal region of RTP801, the protein product of a hypoxia-inducible factor 1 (HIF-1)- responsive gene []. Two members of this family expressed by Drosophila melanogaster, Scylla (Q9NHN4 from SWISSPROT) and Charybde (Q9NHN5 from SWISSPROT), are designated as Hox targets []. RTP801 is thought to be involved in various cellular processes []. Over expression of the gene caused the apoptosis-resistant phenotype in cycling cells, and apoptosis sensitivity in growth arrested cells []. Moreover, the protein product of the mouse homologue of RTP801 (dig2 (Q9D3F7 from SWISSPROT)) is thought to be induced by diverse apoptotic signals, and also by dexamethasone treatment []. ; GO: 0009968 negative regulation of signal transduction, 0005737 cytoplasm; PDB: 3LQ9_A.
Probab=23.13 E-value=3.6e+02 Score=21.15 Aligned_cols=60 Identities=10% Similarity=0.038 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCC-----eEEEecCCCCceeEEEEEcCCCcccCCCEEEEEEEcCCCCC
Q psy4609 87 FIRDKLLIKEVQEMEQNLPNT-----CKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYN 148 (242)
Q Consensus 87 s~~~~RL~~E~~~l~~~~~~g-----i~v~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP 148 (242)
..-.+||.+|+-.+..+-|.| +++.+.++.+-..-...|-.+ |.---+|++.+.|-.+-.
T Consensus 18 ~~L~~~Ia~dvL~ls~~EPCGlRGc~i~v~~E~~~~~~~~l~~i~~D--p~~vpTFEL~Lvlr~d~~ 82 (116)
T PF07809_consen 18 EDLTRRIARDVLRLSESEPCGLRGCLIDVCFEDEPDNCRRLGQIKVD--PSTVPTFELTLVLRQDSS 82 (116)
T ss_dssp HHHHHHHHHHHHHHHTTSTTGGGGEEEEEEEEET-TEEEEEEEEES---TTS---EEEEEEEE--TT
T ss_pred HHHHHHHHHHHHHhhcCCCCcceeeEEEEEEccccchheeeccEecC--CCCCCcEEEEEEEeeCCC
Confidence 345678999999999998875 555555552333333344211 333447999998877655
No 55
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=22.67 E-value=1.1e+02 Score=26.08 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=20.5
Q ss_pred CCEEEEEEEcCCCCCC-----CCCeEEEe
Q psy4609 134 GGKFLFSVSVPEEYNM-----APPKVKCL 157 (242)
Q Consensus 134 gg~f~~~i~fp~~YP~-----~pP~V~f~ 157 (242)
.|.|.|.-..|-.||. .||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3889999999999998 88888775
No 56
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=20.92 E-value=32 Score=35.51 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCCCCCeEEEecccc
Q psy4609 138 LFSVSVPEEYNMAPPKVKCLTKLW 161 (242)
Q Consensus 138 ~~~i~fp~~YP~~pP~V~f~t~i~ 161 (242)
-+.|.+|.+||..+|.+.+.+.-|
T Consensus 717 Pl~l~vP~~YP~~sp~~~~~~~~y 740 (799)
T PF09606_consen 717 PLRLTVPADYPRQSPQCSVDRDEY 740 (799)
T ss_dssp ------------------------
T ss_pred CeeEeCCCCCCccCCcCcccHHHh
Confidence 357899999999999998765433
No 57
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=20.67 E-value=1.3e+02 Score=25.46 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=19.3
Q ss_pred CEEEEEEEcCCCCCC-----CCCeEEEe
Q psy4609 135 GKFLFSVSVPEEYNM-----APPKVKCL 157 (242)
Q Consensus 135 g~f~~~i~fp~~YP~-----~pP~V~f~ 157 (242)
|.|.|.-.+|--||. .||.|.|.
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 889999999999995 77777664
Done!