Query psy4609
Match_columns 242
No_of_seqs 182 out of 1236
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 21:17:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fn1_B NEDD8-conjugating enzym 100.0 1.1E-46 3.7E-51 311.9 18.4 163 79-241 5-167 (167)
2 3h8k_A Ubiquitin-conjugating e 100.0 1.6E-44 5.6E-49 297.9 20.0 152 87-239 2-161 (164)
3 4gpr_A Ubiquitin-conjugating e 100.0 3.1E-44 1.1E-48 292.7 19.0 148 86-241 2-150 (151)
4 2ucz_A UBC7, ubiquitin conjuga 100.0 2.5E-44 8.5E-49 297.2 18.7 152 87-239 3-162 (165)
5 2c4o_A Ubiquitin-conjugating e 100.0 4.9E-44 1.7E-48 295.6 19.1 154 80-241 11-165 (165)
6 2ayv_A Ubiquitin-conjugating e 100.0 6.1E-44 2.1E-48 295.3 18.8 148 85-240 18-166 (166)
7 1zdn_A Ubiquitin-conjugating e 100.0 3.8E-44 1.3E-48 294.3 16.9 151 82-240 7-158 (158)
8 3o2u_A NEDD8-conjugating enzym 100.0 2.3E-44 7.8E-49 303.8 15.8 171 60-240 2-178 (190)
9 1z2u_A Ubiquitin-conjugating e 100.0 8.9E-44 3.1E-48 289.6 18.2 147 87-241 3-150 (150)
10 2nvu_C NEDD8-conjugating enzym 100.0 2.8E-44 9.4E-49 300.9 15.4 149 82-239 20-168 (180)
11 1ayz_A UBC2, ubiquitin-conjuga 100.0 9.5E-44 3.2E-48 294.9 18.0 146 87-240 3-149 (169)
12 2aak_A UBC1, ubiquitin conjuga 100.0 1.5E-43 5.1E-48 288.9 18.2 147 87-241 3-150 (152)
13 2c2v_B Ubiquitin-conjugating e 100.0 3.4E-44 1.2E-48 293.3 14.4 146 88-241 5-151 (154)
14 1yh2_A HSPC150 protein similar 100.0 2.1E-43 7.2E-48 292.8 19.1 152 86-241 2-154 (169)
15 1fxt_A Ubiquitin-conjugating e 100.0 4.2E-44 1.4E-48 291.3 14.4 146 89-241 2-149 (149)
16 3rcz_B SUMO-conjugating enzyme 100.0 2.3E-43 7.7E-48 291.0 18.8 153 83-240 5-162 (163)
17 2r0j_A Ubiquitin carrier prote 100.0 1.3E-43 4.5E-48 288.4 16.9 144 90-241 3-147 (149)
18 2e2c_A Ubiquitin conjugating e 100.0 2E-43 7E-48 289.3 17.4 146 85-239 6-152 (156)
19 3rz3_A Ubiquitin-conjugating e 100.0 2.8E-43 9.4E-48 295.6 17.6 152 86-238 5-170 (183)
20 2awf_A Ubiquitin-conjugating e 100.0 1E-43 3.4E-48 295.5 14.7 150 85-235 14-172 (172)
21 1y8x_A Ubiquitin-conjugating e 100.0 2.6E-43 8.8E-48 289.9 16.8 146 85-239 3-148 (160)
22 2gjd_A Ubiquitin-conjugating e 100.0 3.8E-43 1.3E-47 288.0 17.7 150 87-241 3-157 (157)
23 1jat_A Ubiquitin-conjugating e 100.0 1.9E-43 6.5E-48 289.2 13.8 145 88-240 5-150 (155)
24 3bzh_A Ubiquitin-conjugating e 100.0 1E-42 3.5E-47 294.4 18.6 150 84-241 44-194 (194)
25 2grr_A Ubiquitin-conjugating e 100.0 1.3E-42 4.4E-47 286.0 18.3 151 86-241 5-160 (161)
26 1wzv_A Ubiquitin-conjugating e 100.0 1.1E-42 3.6E-47 284.7 17.0 147 88-240 4-150 (155)
27 2pwq_A Ubiquitin conjugating e 100.0 1.1E-42 3.7E-47 298.6 16.3 150 84-241 19-170 (216)
28 2bep_A Ubiquitin-conjugating e 100.0 3.3E-42 1.1E-46 282.9 18.4 148 86-241 6-158 (159)
29 1i7k_A Ubiquitin-conjugating e 100.0 1.6E-42 5.4E-47 289.9 16.5 147 85-240 27-174 (179)
30 2f4z_A Tgtwinscan_2721 - E2 do 100.0 2.3E-42 7.7E-47 292.1 17.4 147 86-240 30-191 (193)
31 1tte_A Ubiquitin-conjugating e 100.0 5.6E-43 1.9E-47 300.2 13.5 147 88-241 2-150 (215)
32 1yrv_A Ubiquitin-conjugating l 100.0 3E-42 1E-46 285.9 16.0 146 85-237 20-167 (169)
33 1c4z_D UBCH7, ubiquitin conjug 100.0 1.2E-42 4.1E-47 284.1 11.6 147 89-241 3-149 (154)
34 3k9o_A Ubiquitin-conjugating e 100.0 7.6E-42 2.6E-46 290.7 16.8 146 87-240 4-154 (201)
35 2y9m_A Ubiquitin-conjugating e 100.0 9.2E-41 3.1E-45 277.7 17.7 148 86-239 4-166 (172)
36 3e46_A Ubiquitin-conjugating e 100.0 7.3E-41 2.5E-45 293.2 17.9 148 85-240 54-206 (253)
37 2onu_A Ubiquitin-conjugating e 100.0 1.4E-41 4.8E-46 277.4 10.2 142 89-241 3-147 (152)
38 2z5d_A Ubiquitin-conjugating e 100.0 6.4E-41 2.2E-45 280.0 12.4 143 87-241 24-169 (179)
39 1yf9_A Ubiquitin carrier prote 100.0 1.9E-40 6.5E-45 275.5 11.5 144 86-241 10-156 (171)
40 4ddg_A Ubiquitin-conjugating e 100.0 2E-39 6.7E-44 301.3 18.1 147 87-241 2-149 (399)
41 4ds2_A Ubiquitin-conjugating e 100.0 4.5E-39 1.5E-43 266.3 11.7 142 86-234 6-164 (167)
42 2q0v_A Ubiquitin-conjugating e 100.0 3.4E-38 1.2E-42 258.3 9.9 133 84-224 17-156 (156)
43 2a4d_A Ubiquitin-conjugating e 100.0 2.8E-37 9.5E-42 253.7 12.9 129 86-218 23-156 (160)
44 3ceg_A Baculoviral IAP repeat- 100.0 4.4E-37 1.5E-41 276.8 14.1 157 84-241 72-243 (323)
45 1jat_B Ubiquitin-conjugating e 100.0 1.8E-37 6.1E-42 249.2 6.3 127 87-221 5-138 (138)
46 2hlw_A Ubiquitin-conjugating e 100.0 1.2E-36 4E-41 252.4 10.0 129 86-218 33-166 (170)
47 2h2y_A Ubiquitin-conjugating e 100.0 3.6E-35 1.2E-39 235.3 15.4 117 84-208 16-134 (136)
48 2fo3_A Ubiquitin-conjugating e 100.0 2.1E-35 7.1E-40 233.4 13.3 116 87-210 5-122 (125)
49 2a7l_A Hypothetical ubiquitin- 100.0 1.4E-34 4.7E-39 231.9 12.3 119 80-204 14-136 (136)
50 2f4w_A Ubiquitin-conjugating e 100.0 8.7E-33 3E-37 232.4 15.4 126 80-212 6-132 (187)
51 1zuo_A Hypothetical protein LO 100.0 1.5E-33 5.3E-38 236.8 4.4 142 81-237 20-178 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 9.9E-23 3.4E-27 166.1 3.6 121 84-222 28-160 (172)
53 3r3q_A Suppressor protein STP2 99.7 1E-16 3.6E-21 131.2 9.9 112 91-211 31-161 (162)
54 3kpa_A Probable ubiquitin fold 99.5 1.5E-15 5.2E-20 121.3 1.6 85 85-176 31-127 (168)
55 3obq_A Tumor susceptibility ge 99.4 8.8E-13 3E-17 106.2 7.6 103 94-207 26-140 (146)
56 2ebm_A RWD domain-containing p 95.7 0.15 5.1E-06 38.8 11.2 66 90-158 12-78 (128)
57 2yz0_A Serine/threonine-protei 95.2 0.13 4.3E-06 39.8 9.2 67 91-158 13-85 (138)
58 2ebk_A RWD domain-containing p 94.6 0.23 7.7E-06 37.8 9.0 65 93-157 12-78 (128)
59 1ukx_A GCN2, GCN2 EIF2alpha ki 94.6 0.24 8.2E-06 38.0 9.2 67 90-157 12-85 (137)
60 2day_A Ring finger protein 25; 94.3 0.36 1.2E-05 36.6 9.7 66 92-158 12-82 (128)
61 2daw_A RWD domain containing p 90.4 5.3 0.00018 31.3 13.0 23 136-158 76-98 (154)
62 3zqs_A E3 ubiquitin-protein li 87.4 1.3 4.5E-05 36.3 6.5 84 92-205 5-88 (186)
63 2dax_A Protein C21ORF6; RWD do 84.7 0.87 3E-05 35.7 4.0 23 136-158 74-96 (152)
64 2cwb_A Chimera of immunoglobul 37.7 6.9 0.00024 29.2 0.0 29 208-236 22-50 (108)
65 3u3c_B Paxillin LD2 peptide; 4 27.9 38 0.0013 18.1 1.9 20 89-108 6-25 (26)
66 3rls_A YAF9, protein AF-9 homo 22.6 1.7E+02 0.0059 23.4 5.8 42 116-159 30-72 (175)
67 2bum_A Protocatechuate 3,4-dio 21.8 71 0.0024 26.3 3.5 25 133-157 109-138 (209)
No 1
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=1.1e-46 Score=311.93 Aligned_cols=163 Identities=63% Similarity=1.116 Sum_probs=153.2
Q ss_pred CCCccccchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEEcCCCcccCCCEEEEEEEcCCCCCCCCCeEEEec
Q psy4609 79 DKSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLT 158 (242)
Q Consensus 79 ~~~~~~~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t 158 (242)
.+.+.++.+.+.+||++|+++|+++++.||++.+++++++++|+++|||++|||+||+|+++|.||++||++||+|+|.|
T Consensus 5 ~~~~~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 84 (167)
T 3fn1_B 5 ASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLT 84 (167)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEECCSSSTTTTCCEEEEEECCTTBTTBCCEEEECS
T ss_pred cCCCccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEECCCCCccCCCEEEEEEECCCCCCCCCCeeEecC
Confidence 34566788999999999999999999999999877888999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhc
Q psy4609 159 KLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFG 238 (242)
Q Consensus 159 ~i~HPnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~ 238 (242)
+||||||+.+|.||+++|..++.++++|+|+++|.+||.+|+++|.++|++++|+|.|||++|++|+++|.++||+|++.
T Consensus 85 ~i~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~ 164 (167)
T 3fn1_B 85 KIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKR 164 (167)
T ss_dssp CCCCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CcccCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 99999999999999999998888889999999999999999999998569999999999999999999999999999998
Q ss_pred cCC
Q psy4609 239 EGI 241 (242)
Q Consensus 239 ~g~ 241 (242)
+++
T Consensus 165 ~A~ 167 (167)
T 3fn1_B 165 YAR 167 (167)
T ss_dssp HCC
T ss_pred hcC
Confidence 764
No 2
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=1.6e-44 Score=297.93 Aligned_cols=152 Identities=24% Similarity=0.481 Sum_probs=141.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccc
Q psy4609 87 FIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNI 165 (242)
Q Consensus 87 s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV 165 (242)
+.+.+||++|+++|+++++.||++.+.+++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|++|||||
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV 81 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence 467899999999999999999999776767999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCcEEeeCCCCCCCC-------CCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhc
Q psy4609 166 NENGDICLSLLRQNSID-------GLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFG 238 (242)
Q Consensus 166 ~~~G~iCl~~L~~~~~~-------~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~ 238 (242)
+.+|+||+++|..++.| .++|+|+++|++||.+|+++|.+ |++++|+|.+||++|++|+++|.++||+|++.
T Consensus 82 ~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~-pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~ 160 (164)
T 3h8k_A 82 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAE-PNDESGANVDASKMWRDDREQFYKIAKQIVQK 160 (164)
T ss_dssp CTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHS-CCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcC-CCCCCccCHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 99999999999854333 36899999999999999999999 99999999999999999999999999999985
Q ss_pred c
Q psy4609 239 E 239 (242)
Q Consensus 239 ~ 239 (242)
+
T Consensus 161 s 161 (164)
T 3h8k_A 161 S 161 (164)
T ss_dssp H
T ss_pred h
Confidence 3
No 3
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=3.1e-44 Score=292.69 Aligned_cols=148 Identities=34% Similarity=0.624 Sum_probs=141.0
Q ss_pred chHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccccc
Q psy4609 86 IFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPN 164 (242)
Q Consensus 86 ~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPn 164 (242)
.+.+.+||++|+++|+++++.||++.+ .++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|++||||
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~p-~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 80 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAGP-VGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPN 80 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEE-SSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEE-cCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccce
Confidence 356789999999999999999999974 568899999999 899999999999999999999999999999999999999
Q ss_pred ccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 165 INENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 165 V~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
|+.+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.|||++|++|+++|.++||+|++.+++
T Consensus 81 v~~~G~iCl~iL~~------~W~p~~~i~~vl~~i~~ll~~-p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~ 150 (151)
T 4gpr_A 81 INKNGVICLDILKD------QWSPALTLSRVLLSISSLLTD-PNPSDPLDPEVANVLRANKKQFEDTAREWTRMYAR 150 (151)
T ss_dssp BCTTCBBCCGGGTT------TCCTTCCHHHHHHHHHHHHHC-CCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred ECCCCEEEcccccC------CCCCCCcHHHHHHHHHHHhcC-CCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 99999999999975 899999999999999999999 99999999999999999999999999999998875
No 4
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=2.5e-44 Score=297.19 Aligned_cols=152 Identities=23% Similarity=0.494 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccc
Q psy4609 87 FIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNI 165 (242)
Q Consensus 87 s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV 165 (242)
+.+.+||++|+++|+++++.||++.+.+++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|++|||||
T Consensus 3 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv 82 (165)
T 2ucz_A 3 KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNI 82 (165)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCC
Confidence 468899999999999999999999766668999999988 9999999999999999999999999999999999999999
Q ss_pred cCCCcEEeeCCCCCCCC-------CCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhc
Q psy4609 166 NENGDICLSLLRQNSID-------GLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFG 238 (242)
Q Consensus 166 ~~~G~iCl~~L~~~~~~-------~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~ 238 (242)
+.+|+||+++|...+.| .++|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++|+++|.++||+|++.
T Consensus 83 ~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~-Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~ 161 (165)
T 2ucz_A 83 YPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSE-PNIESGANIDACILWRDNRPEFERQVKLSILK 161 (165)
T ss_dssp CTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHS-CCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhC-CCCCCchhHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 99999999999643222 46899999999999999999998 99999999999999999999999999999986
Q ss_pred c
Q psy4609 239 E 239 (242)
Q Consensus 239 ~ 239 (242)
+
T Consensus 162 ~ 162 (165)
T 2ucz_A 162 S 162 (165)
T ss_dssp H
T ss_pred H
Confidence 4
No 5
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=4.9e-44 Score=295.59 Aligned_cols=154 Identities=31% Similarity=0.608 Sum_probs=142.1
Q ss_pred CCccccchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEec
Q psy4609 80 KSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLT 158 (242)
Q Consensus 80 ~~~~~~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t 158 (242)
+..+...+.+.+||++|+++|+++++.||++. ++++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|
T Consensus 11 ~~~~~~~~~~~~RL~kEl~~l~~~~~~gi~~~-p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T 89 (165)
T 2c4o_A 11 SGLVPRGSMALKRIHKELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT 89 (165)
T ss_dssp -----CCHHHHHHHHHHHHHHHSSCCTTEEEE-ESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS
T ss_pred cccccCCcHHHHHHHHHHHHHHhCCCCCEEEE-EcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEec
Confidence 44456677899999999999999999999996 4568899999998 999999999999999999999999999999999
Q ss_pred ccccccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhc
Q psy4609 159 KLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFG 238 (242)
Q Consensus 159 ~i~HPnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~ 238 (242)
+||||||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.+||++|.+|+++|.++||+|++.
T Consensus 90 ~i~HPnV~~~G~ICl~iL~~------~W~P~~ti~~vL~si~~ll~~-pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~ 162 (165)
T 2c4o_A 90 RIYHPNINSNGSICLDILRS------QWSPALTISKVLLSICSLLCD-PNPDDPLVPEIARIYKTDREKYNRIAREWTQK 162 (165)
T ss_dssp CCCBTTBCTTCBBCCGGGTT------TCCTTCCHHHHHHHHHHHHHS-CCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCcCCcCCCCCeEeehhhcC------CCCCcCcHHHHHHHHHHHHhC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999985 899999999999999999999 89999999999999999999999999999998
Q ss_pred cCC
Q psy4609 239 EGI 241 (242)
Q Consensus 239 ~g~ 241 (242)
+++
T Consensus 163 ~a~ 165 (165)
T 2c4o_A 163 YAM 165 (165)
T ss_dssp TTC
T ss_pred HhC
Confidence 764
No 6
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=6.1e-44 Score=295.26 Aligned_cols=148 Identities=30% Similarity=0.618 Sum_probs=139.7
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccc
Q psy4609 85 RIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHP 163 (242)
Q Consensus 85 ~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HP 163 (242)
..+.+.+||++|+++|+++++.||++. ++++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus 18 ~~~~~~~RL~kEl~~l~~~~~~gi~~~-~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP 96 (166)
T 2ayv_A 18 YFQGALKRINKELNDLSKDPPTNCSAG-PVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHP 96 (166)
T ss_dssp -CTTHHHHHHHHHHHHHHSCCTTEEEE-ECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBT
T ss_pred cCcHHHHHHHHHHHHHHhCCCCCEEEE-EcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCC
Confidence 455688999999999999999999996 4667899999998 99999999999999999999999999999999999999
Q ss_pred cccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccC
Q psy4609 164 NINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEG 240 (242)
Q Consensus 164 nV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g 240 (242)
||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++|+++|.++||+|++.++
T Consensus 97 NI~~~G~ICL~iL~~------~WsP~~ti~~vL~sI~sll~~-pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 97 NINSQGAICLDILKD------QWSPALTISKVLLSISSLLTD-PNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp TBCTTCBBCCGGGTT------TCCTTCCHHHHHHHHHHHHHS-CCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCeEEcccccc------cCCCCCcHHHHHHHHHHHHhC-CCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999999985 899999999999999999999 8999999999999999999999999999998763
No 7
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.8e-44 Score=294.28 Aligned_cols=151 Identities=28% Similarity=0.496 Sum_probs=141.6
Q ss_pred ccccchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccc
Q psy4609 82 SNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKL 160 (242)
Q Consensus 82 ~~~~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i 160 (242)
....+..+.+||++|+++|+++++.||++. ++++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|++
T Consensus 7 ~~~~s~~~~~RL~kEl~~l~~~~~~gi~~~-~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 85 (158)
T 1zdn_A 7 VENLPPHIIRLVYKEVTTLTADPPDGIKVF-PNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKI 85 (158)
T ss_dssp -CCSCHHHHHHHHHHHHHHHHSCCTTEEEE-ECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCCCEEEE-ECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCc
Confidence 344566788999999999999999999996 5778899999998 99999999999999999999999999999999999
Q ss_pred ccccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccC
Q psy4609 161 WHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEG 240 (242)
Q Consensus 161 ~HPnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g 240 (242)
|||||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++|+++|.++||+|++.++
T Consensus 86 ~HPnv~~~G~iCl~iL~~------~W~p~~~i~~vL~~i~~ll~~-pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 86 FHPNVGANGEICVNVLKR------DWTAELGIRHVLLTIKCLLIH-PNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp CCTTBCTTSBBCHHHHTT------TCCTTCCHHHHHHHHHHHHHS-CCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCEEehhhcCC------CCCCCCcHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999999999975 899999999999999999999 9999999999999999999999999999998653
No 8
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=2.3e-44 Score=303.77 Aligned_cols=171 Identities=30% Similarity=0.588 Sum_probs=152.9
Q ss_pred ehhhHHHHHhhhhccCCCCCCCccccchHHHHHHHHHHHHHHhCCCCCeEEEe---cCCCCce---eEEEEEcCCCcccC
Q psy4609 60 NMITLSKKLKMQNEGCDIVDKSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKF---TNPNHLH---EFTIVISPDEGYWR 133 (242)
Q Consensus 60 ~~~~L~~~l~~~~~~~~~~~~~~~~~~s~~~~RL~~E~~~l~~~~~~gi~v~~---~~~~~l~---~w~~~igp~~tpye 133 (242)
.|++|++..++.+.+.+.+ ..+..+.+.+.+||++|+++|+ .+.|+++.+ ++++|++ .|+++|+|++|||+
T Consensus 2 ~m~~l~~~~~~~~~~~~~~-~~~~~~~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~p~~tpye 78 (190)
T 3o2u_A 2 SMLKLRQLQKKKQKENENS-SSIQPNLSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYN 78 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHH-HSSSCCCCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEECCSSSTTT
T ss_pred chHHHHHHHHHHHHHHHhc-CCCCCCccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEcCCCCCCC
Confidence 3788877654444332222 2456677889999999999998 778999975 7889999 99999999999999
Q ss_pred CCEEEEEEEcCCCCCCCCCeEEEecccccccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcc
Q psy4609 134 GGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPL 213 (242)
Q Consensus 134 gg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~ 213 (242)
||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+ |+++||+
T Consensus 79 gg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL~~------~W~p~~~i~~vL~~i~~ll~~-pn~~~pl 151 (190)
T 3o2u_A 79 YGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILRE------DWSPALDLQSIITGLLFLFLE-PNPNDPL 151 (190)
T ss_dssp TCCEEEEEECCTTTTTSCCEEEECSCCCCTTBCTTSBBCCGGGTT------TCCTTCCHHHHHHHHHHHHHS-CCTTSCS
T ss_pred CCEEEEEEECCCCCCCCCceeEEecCcccCCCCCCCeEechhccC------CCCCCCCHHHHHHHHHHHHhC-CCCCcch
Confidence 999999999999999999999999999999999999999999975 899999999999999999999 9999999
Q ss_pred cHHHHHHHHHCHHHHHHHHHHHHhccC
Q psy4609 214 NIEAAEMYQKNKELFRERARCLEFGEG 240 (242)
Q Consensus 214 N~eAa~~~~~d~~~f~~~vr~~~~~~g 240 (242)
|.+||++|.+|+++|.++||+|++++-
T Consensus 152 n~~aa~~~~~d~~~f~~~ar~~~~~~~ 178 (190)
T 3o2u_A 152 NKDAAKLLCEGEKEFAEAVRLTMSGGS 178 (190)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHHHBTCE
T ss_pred hHHHHHHHHHCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999998763
No 9
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=8.9e-44 Score=289.62 Aligned_cols=147 Identities=33% Similarity=0.648 Sum_probs=139.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccc
Q psy4609 87 FIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNI 165 (242)
Q Consensus 87 s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV 165 (242)
..+.+||++|+++|+++++.|+++.+ +++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 3 ~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (150)
T 1z2u_A 3 HMALKRIQKELQDLGRDPPAQCSAGP-VGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 81 (150)
T ss_dssp CHHHHHHHHHHHHHHHSCCSSEEEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEE-CCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcC
Confidence 45779999999999999999999964 558899999998 9999999999999999999999999999999999999999
Q ss_pred cCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 166 NENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 166 ~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
+.+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++|+++|.++||+|++.+++
T Consensus 82 ~~~G~iCl~iL~~------~W~p~~~i~~vl~~i~~ll~~-pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 82 NSNGSICLDILRS------QWSPALTISKVLLSICSLLCD-PNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp CTTCBBCCGGGTT------TCCTTCCHHHHHHHHHHHHHS-CCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCCeEeeccccC------CCCCCCCHHHHHHHHHHHhhC-CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999985 899999999999999999998 89999999999999999999999999999998764
No 10
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.8e-44 Score=300.89 Aligned_cols=149 Identities=42% Similarity=0.812 Sum_probs=141.7
Q ss_pred ccccchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEEcCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccc
Q psy4609 82 SNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLW 161 (242)
Q Consensus 82 ~~~~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~ 161 (242)
+..+.+.+.+||++|+++| +++.|+++.+++++|++.|+++|||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus 20 ~~~~~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~igP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~ 97 (180)
T 2nvu_C 20 SSKKASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVY 97 (180)
T ss_dssp CCCSCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEECCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred ccCCccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCc
Confidence 3667888999999999999 57889999878889999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhcc
Q psy4609 162 HPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGE 239 (242)
Q Consensus 162 HPnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~ 239 (242)
||||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++|+++|.++||++++++
T Consensus 98 HPNV~~~G~iCl~iL~~------~W~p~~~i~~vL~si~~ll~~-Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~~ 168 (180)
T 2nvu_C 98 HPNIDLEGNVALNILRE------DWKPVLTINSIIYGLQYLFLE-PNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 168 (180)
T ss_dssp BTTBCTTSBBCCGGGTT------SCCTTCCHHHHHHHHHHHHHS-CCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHSE
T ss_pred cCCCCCCCcEEcccccc------cCCCCCCHHHHHHHHHHHHhC-CCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhC
Confidence 99999999999999985 899999999999999999999 999999999999999999999999999999865
No 11
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=9.5e-44 Score=294.89 Aligned_cols=146 Identities=27% Similarity=0.567 Sum_probs=138.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccc
Q psy4609 87 FIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNI 165 (242)
Q Consensus 87 s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV 165 (242)
+.+.+||++|+++|+++++.||++. +.+++++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||
T Consensus 3 ~~a~~RL~kEl~~l~~~~~~gi~~~-p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI 81 (169)
T 1ayz_A 3 TPARRRLMRDFKRMKEDAPPGVSAS-PLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV 81 (169)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEE-EETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEE-ecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCC
Confidence 4678999999999999999999996 5578899999988 9999999999999999999999999999999999999999
Q ss_pred cCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccC
Q psy4609 166 NENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEG 240 (242)
Q Consensus 166 ~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g 240 (242)
+.+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++|+++|.++||+|++.+.
T Consensus 82 ~~~G~ICl~iL~~------~WsP~~~i~~vL~si~~ll~~-Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a 149 (169)
T 1ayz_A 82 YANGEICLDILQN------RWTPTYDVASILTSIQSLFND-PNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149 (169)
T ss_dssp CTTSBBCCGGGTT------TCCTTCCHHHHHHHHHHHHTC-CCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCCCeEeehhhcc------CCCCcCcHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence 9999999999986 899999999999999999998 9999999999999999999999999999998653
No 12
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1.5e-43 Score=288.90 Aligned_cols=147 Identities=30% Similarity=0.594 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccc
Q psy4609 87 FIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNI 165 (242)
Q Consensus 87 s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV 165 (242)
+.+.+||++|+++|+++++.|+++. ++++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|++|||||
T Consensus 3 ~~a~~RL~~E~~~l~~~~~~~i~~~-~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (152)
T 2aak_A 3 TPARKRLMRDFKRLQQDPPAGISGA-PQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI 81 (152)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEE-EETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEE-eCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCC
Confidence 4678999999999999999999995 5678899999988 9999999999999999999999999999999999999999
Q ss_pred cCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 166 NENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 166 ~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
+.+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++|+++|.++||+|++.++.
T Consensus 82 ~~~G~iCl~iL~~------~W~p~~~i~~vl~~i~~ll~~-p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 150 (152)
T 2aak_A 82 YADGSICLDILQN------QWSPIYDVAAILTSIQSLLCD-PNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150 (152)
T ss_dssp CTTSBBCCGGGTT------SCCTTCCHHHHHHHHHHHHTS-CCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCCEEechhhcC------CCCCCCcHHHHHHHHHHHHhC-CCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 9999999999975 899999999999999999998 89999999999999999999999999999987653
No 13
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.4e-44 Score=293.35 Aligned_cols=146 Identities=32% Similarity=0.580 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccccccc
Q psy4609 88 IRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNIN 166 (242)
Q Consensus 88 ~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~ 166 (242)
.+.+||++|+++|+++++.||++. +.+++++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus 5 ~~~~RL~kEl~~l~~~~~~~i~~~-~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 83 (154)
T 2c2v_B 5 GLPRRIIKETQRLLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD 83 (154)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEE-ECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEE-ECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCc
Confidence 345899999999999999999996 5667999999999 99999999999999999999999999999999999999999
Q ss_pred CCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 167 ENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 167 ~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
.+|.||+++|.. +|+|+++|.+||.+|+++|.+ |+++||+|.+||++|++|+++|.++||+|++.+++
T Consensus 84 ~~G~iCl~iL~~------~W~p~~~i~~vl~~i~~ll~~-pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~ 151 (154)
T 2c2v_B 84 KLGRICLDILKD------KWSPALQIRTVLLSIQALLSA-PNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 151 (154)
T ss_dssp TTCBBCCHHHHT------SCCTTCCHHHHHHHHHHHTTS-CCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cCCeEEchhccC------CCCCCCcHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 999999999975 899999999999999999999 89999999999999999999999999999987653
No 14
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.1e-43 Score=292.82 Aligned_cols=152 Identities=25% Similarity=0.471 Sum_probs=141.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccccc
Q psy4609 86 IFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPN 164 (242)
Q Consensus 86 ~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPn 164 (242)
+..+.+||++|+++|+++++.||++. +++++++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+|||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~gi~~~-~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN 80 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATEPPPGITCW-QDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPN 80 (169)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEE-ESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEE-eCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCcccc
Confidence 35678999999999999999999996 5678899999988 999999999999999999999999999999999999999
Q ss_pred ccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 165 INENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 165 V~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
|+.+|.||+++|+.+ ..++|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++|+++|.++||+|++.+++
T Consensus 81 v~~~G~iCl~iL~~~--~~~~W~p~~~i~~vL~si~~ll~~-p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~ 154 (169)
T 1yh2_A 81 IDSAGRICLDVLKLP--PKGAWRPSLNIATVLTSIQLLMSE-PNPDDPLMADISSEFKYNKPAFLKNARQWTEKHAR 154 (169)
T ss_dssp BCTTCBBCCGGGSCT--TTSCCCTTSCHHHHHHHHHHHHHS-CCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred CCcCCeEecccccCC--cccCCCCCCcHHHHHHHHHHHHhC-CCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHcc
Confidence 999999999999832 114899999999999999999999 99999999999999999999999999999987664
No 15
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=4.2e-44 Score=291.26 Aligned_cols=146 Identities=30% Similarity=0.585 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccccC
Q psy4609 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINE 167 (242)
Q Consensus 89 ~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~~ 167 (242)
+.+||++|+++|+++++.||++.+.++++++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 4689999999999999999999876665899999998 999999999999999999999999999999999999999997
Q ss_pred -CCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 168 -NGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 168 -~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++|+++|.++||+|++.+++
T Consensus 82 ~~G~iCl~iL~~------~W~p~~~i~~vl~~i~~ll~~-p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 82 VTGAICLDILKN------AWSPVITLKSALISLQALLQS-PEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp SSCCBCCHHHHT------SCCTTCCHHHHHHHHHHHHHS-CCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred CCCeEeCCcCCC------CCCCCCcHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 99999999975 899999999999999999999 89999999999999999999999999999988763
No 16
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=2.3e-43 Score=291.04 Aligned_cols=153 Identities=27% Similarity=0.549 Sum_probs=140.4
Q ss_pred cccchHHHHHHHHHHHHHHhCCCCCeEEEecCC-C---CceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEe
Q psy4609 83 NKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNP-N---HLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCL 157 (242)
Q Consensus 83 ~~~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~-~---~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~ 157 (242)
...+..+.+||++|+++|+++++.||++.+.++ + |++.|+++| ||++|||+||+|+++|.||++||++||+|+|.
T Consensus 5 ~~~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~ 84 (163)
T 3rcz_B 5 HHHSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFT 84 (163)
T ss_dssp ----CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred cCCcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEe
Confidence 456778999999999999999999999975433 2 899999999 99999999999999999999999999999999
Q ss_pred cccccccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHh
Q psy4609 158 TKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEF 237 (242)
Q Consensus 158 t~i~HPnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~ 237 (242)
|+||||||+.+|.||+++|.. .++|+|+++|++||.+|+++|.+ |++++|+|.+||++|++|+++|.++||+|++
T Consensus 85 t~i~HPnV~~~G~iCl~iL~~----~~~W~p~~ti~~vL~~i~~ll~~-P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~ 159 (163)
T 3rcz_B 85 PPLFHPNVYPSGTVCLSILNE----EEGWKPAITIKQILLGIQDLLDD-PNIASPAQTEAYTMFKKDKVEYEKRVRAQAR 159 (163)
T ss_dssp SCCCSTTBCTTSBBCCGGGCT----TTTCCTTCCHHHHHHHHHHHHTS-CCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCccCCCCCCCcEeccccCC----CCCcCCcCcHHHHHHHHHHHHhC-CCCCCccCHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999999999999999999985 34699999999999999999998 9999999999999999999999999999999
Q ss_pred ccC
Q psy4609 238 GEG 240 (242)
Q Consensus 238 ~~g 240 (242)
.++
T Consensus 160 ~ya 162 (163)
T 3rcz_B 160 ENA 162 (163)
T ss_dssp HTC
T ss_pred HhC
Confidence 875
No 17
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=1.3e-43 Score=288.37 Aligned_cols=144 Identities=31% Similarity=0.602 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccccCC
Q psy4609 90 DKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINEN 168 (242)
Q Consensus 90 ~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~~~ 168 (242)
.+||++|+++|+++++.|+++.+ +++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~~-~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 81 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAVP-VPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 81 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEE-CCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCC
Confidence 47999999999999999999964 568899999998 9999999999999999999999999999999999999999999
Q ss_pred CcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 169 GDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 169 G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++|+++|.++||+|++.+++
T Consensus 82 G~iCl~iL~~------~W~p~~~i~~vl~~i~~ll~~-p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 147 (149)
T 2r0j_A 82 GRICLDILKD------KWSPALQIRTVLLSIQALLSS-PEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYAN 147 (149)
T ss_dssp CBBCCGGGTT------TCCTTSCHHHHHHHHHHHHHS-CCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred CEEechhcCC------CCCCCCcHHHHHHHHHHHHhC-CCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 9999999985 899999999999999999999 89999999999999999999999999999987764
No 18
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=2e-43 Score=289.29 Aligned_cols=146 Identities=23% Similarity=0.489 Sum_probs=137.9
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccc
Q psy4609 85 RIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHP 163 (242)
Q Consensus 85 ~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HP 163 (242)
..+.+.+||++|+++|+++++.||++. +++++++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|++|||
T Consensus 6 ~~~~~~~RL~kEl~~l~~~~~~~i~~~-p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 84 (156)
T 2e2c_A 6 ERHSVSKRLQQELRTLLMSGDPGITAF-PDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHP 84 (156)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCTTEEEE-ESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred cchHHHHHHHHHHHHHHhCCCCCEEEE-ECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccC
Confidence 345678999999999999999999995 5677999999998 99999999999999999999999999999999999999
Q ss_pred cccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhcc
Q psy4609 164 NINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGE 239 (242)
Q Consensus 164 nV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~ 239 (242)
||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.+||++| +|+++|.++||+|++.+
T Consensus 85 nv~~~G~iCl~iL~~------~W~p~~~i~~vL~si~~ll~~-pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~ 152 (156)
T 2e2c_A 85 NVDQSGNICLDILKE------NWTASYDVRTILLSLQSLLGE-PNNASPLNAQAADMW-SNQTEYKKVLHEKYKTA 152 (156)
T ss_dssp TBCTTCBBCCGGGTT------TCCTTCCHHHHHHHHHHHTTS-CCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred CCccCceEECccccc------cCCCCCcHHHHHHHHHHHHhC-CCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHh
Confidence 999999999999975 899999999999999999999 899999999999999 89999999999999864
No 19
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=2.8e-43 Score=295.58 Aligned_cols=152 Identities=28% Similarity=0.587 Sum_probs=138.6
Q ss_pred chHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccccc
Q psy4609 86 IFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPN 164 (242)
Q Consensus 86 ~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPn 164 (242)
.+.+.+||++|+++|+++++.||++.+++++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|++||||
T Consensus 5 ~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 84 (183)
T 3rz3_A 5 SPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPN 84 (183)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCC
Confidence 3568899999999999999999999878889999999999 999999999999999999999999999999999999999
Q ss_pred ccCCCcEEeeCCCCCCCC-------CCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHH------CHHHHHHH
Q psy4609 165 INENGDICLSLLRQNSID-------GLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQK------NKELFRER 231 (242)
Q Consensus 165 V~~~G~iCl~~L~~~~~~-------~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~------d~~~f~~~ 231 (242)
|+.+|.||+++|...+.| .++|+|+++|++||.+|+++|.+ ||+++|+|.+||++|++ |+++|.++
T Consensus 85 V~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~-Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~ 163 (183)
T 3rz3_A 85 IYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNE-PNTFSPANVDASVMYRKWKESKGKDREYTDI 163 (183)
T ss_dssp BCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHS-CCCSSCSSHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred CCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHhcccccccHHHHHHH
Confidence 999999999999853322 26899999999999999999999 99999999999999988 78999999
Q ss_pred HHHHHhc
Q psy4609 232 ARCLEFG 238 (242)
Q Consensus 232 vr~~~~~ 238 (242)
||++++.
T Consensus 164 v~~~v~~ 170 (183)
T 3rz3_A 164 IRKQVLG 170 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999764
No 20
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=1e-43 Score=295.52 Aligned_cols=150 Identities=27% Similarity=0.608 Sum_probs=111.3
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccc
Q psy4609 85 RIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHP 163 (242)
Q Consensus 85 ~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HP 163 (242)
..+.+.+||++|+++|+++++.||++.+.+++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus 14 ~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HP 93 (172)
T 2awf_A 14 LVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHP 93 (172)
T ss_dssp CCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCT
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccC
Confidence 35678899999999999999999999876778999999988 99999999999999999999999999999999999999
Q ss_pred cccCCCcEEeeCCCCCCCC-------CCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHH-HHHHHHHHH
Q psy4609 164 NINENGDICLSLLRQNSID-------GLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKE-LFRERARCL 235 (242)
Q Consensus 164 nV~~~G~iCl~~L~~~~~~-------~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~-~f~~~vr~~ 235 (242)
||+.+|+||+++|...+.| .++|+|+++|++||.+|+++|.+ |++++|+|.+||++|++|++ +|.++||+|
T Consensus 94 NV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~-Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 94 NVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLAD-PNGDSPANVDAAKEWREDRNGEFKRKVARC 172 (172)
T ss_dssp TBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSC-C-----------------------------
T ss_pred CCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHC-cCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence 9999999999999853322 36899999999999999999999 99999999999999999999 999999976
No 21
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.6e-43 Score=289.89 Aligned_cols=146 Identities=42% Similarity=0.829 Sum_probs=138.9
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEEcCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccccc
Q psy4609 85 RIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPN 164 (242)
Q Consensus 85 ~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPn 164 (242)
+.+.+.+||++|+++| +++.|+++.+++++|++.|+++|||++|||+||+|+++|.||++||++||+|+|.|++||||
T Consensus 3 ~~~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (160)
T 1y8x_A 3 MASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN 80 (160)
T ss_dssp SCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred cccHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCc
Confidence 3567899999999999 57889999767889999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhcc
Q psy4609 165 INENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGE 239 (242)
Q Consensus 165 V~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~ 239 (242)
|+.+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++|+++|.++||++++++
T Consensus 81 v~~~G~iCl~iL~~------~W~p~~~i~~vL~~i~~ll~~-Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~~ 148 (160)
T 1y8x_A 81 IDLEGNVCLNILRE------DWKPVLTINSIIYGLQYLFLE-PNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 148 (160)
T ss_dssp BCTTCBBCCGGGTT------TCCTTCCHHHHHHHHHHHHHS-CCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSE
T ss_pred CCCCCeEEcccchh------hccCCCCHHHHHHHHHHHHhC-CCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhC
Confidence 99999999999985 899999999999999999999 999999999999999999999999999999865
No 22
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=3.8e-43 Score=288.02 Aligned_cols=150 Identities=25% Similarity=0.447 Sum_probs=139.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCC----CCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccc
Q psy4609 87 FIRDKLLIKEVQEMEQNLPNTCKTKFTNP----NHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLW 161 (242)
Q Consensus 87 s~~~~RL~~E~~~l~~~~~~gi~v~~~~~----~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~ 161 (242)
+.+.+||++|+++|+++++.|+++.+.+. +|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|
T Consensus 3 ~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 82 (157)
T 2gjd_A 3 SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY 82 (157)
T ss_dssp CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCc
Confidence 46789999999999999999999965432 4899999999 999999999999999999999999999999999999
Q ss_pred cccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 162 HPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 162 HPnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
||||+.+|.||+++|.. .++|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++|+++|.++||+|++.+++
T Consensus 83 HPnv~~~G~iCl~iL~~----~~~W~p~~~i~~vl~~i~~ll~~-p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 83 HPNVYPSGTICLSILNE----DQDWRPAITLKQIVLGVQDLLDS-PNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp CTTBCTTSBBCCGGGCT----TTTCCTTCCHHHHHHHHHHHHTS-CCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred cCCCCCCCcEeeecccC----CCCCCCCCcHHHHHHHHHHHHhC-CCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 99999999999999986 24799999999999999999998 99999999999999999999999999999998764
No 23
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=1.9e-43 Score=289.19 Aligned_cols=145 Identities=29% Similarity=0.553 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccccccc
Q psy4609 88 IRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNIN 166 (242)
Q Consensus 88 ~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~ 166 (242)
.+.+||++|+++|+++++.||++. +++++++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|++|||||+
T Consensus 5 ~~~~RL~kE~~~l~~~~~~~i~~~-~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 83 (155)
T 1jat_A 5 SLPKRIIKETEKLVSDPVPGITAE-PHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 83 (155)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEE-EETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEE-ECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCC
Confidence 355899999999999999999996 4568899999999 99999999999999999999999999999999999999999
Q ss_pred CCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccC
Q psy4609 167 ENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEG 240 (242)
Q Consensus 167 ~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g 240 (242)
.+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++|+++|.++||+|++.++
T Consensus 84 ~~G~iCl~iL~~------~W~p~~~i~~vl~~i~~ll~~-p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a 150 (155)
T 1jat_A 84 RLGRICLDVLKT------NWSPALQIRTVLLSIQALLAS-PNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 150 (155)
T ss_dssp TTCCBCCGGGTT------TCCTTCCHHHHHHHHHHHHHS-CCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEchhhcc------CCCCCCCHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 999999999975 899999999999999999999 8999999999999999999999999999998765
No 24
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1e-42 Score=294.44 Aligned_cols=150 Identities=29% Similarity=0.525 Sum_probs=141.7
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccc
Q psy4609 84 KRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWH 162 (242)
Q Consensus 84 ~~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~H 162 (242)
...+.+.+||++|+++|+++++.||++. ++++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+|||
T Consensus 44 ~~~s~a~~RL~kEl~~l~~~~~~gi~~~-p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H 122 (194)
T 3bzh_A 44 KLLSTSAKRIQKELADITLDPPPNCSAG-PKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYH 122 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCTTEEEE-ESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred ccccHHHHHHHHHHHHHHhCCCCCceee-cccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCcc
Confidence 3456789999999999999999999996 5678899999988 9999999999999999999999999999999999999
Q ss_pred ccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 163 PNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 163 PnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
|||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.+||++|.+|+++|.++||+|++.+++
T Consensus 123 PNV~~~G~ICL~iL~~------~WsP~~ti~~vL~sI~~ll~~-pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 123 CNINSQGVICLDILKD------NWSPALTISKVLLSICSLLTD-CNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp TTBCTTCBBCCGGGTT------TCCTTCCHHHHHHHHHHHHHS-CCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred ceECCCCceechhhhc------cCCCcCcHHHHHHHHHHHHhC-CCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 9999999999999975 899999999999999999999 89999999999999999999999999999988764
No 25
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=1.3e-42 Score=285.96 Aligned_cols=151 Identities=25% Similarity=0.457 Sum_probs=140.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCCeEEEecC----CCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccc
Q psy4609 86 IFIRDKLLIKEVQEMEQNLPNTCKTKFTN----PNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKL 160 (242)
Q Consensus 86 ~s~~~~RL~~E~~~l~~~~~~gi~v~~~~----~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i 160 (242)
.+.+.+||++|+++|+++++.|+++.+.. ++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|++
T Consensus 5 ~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 84 (161)
T 2grr_A 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPL 84 (161)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred cHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCc
Confidence 35688999999999999999999986542 36899999999 99999999999999999999999999999999999
Q ss_pred ccccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccC
Q psy4609 161 WHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEG 240 (242)
Q Consensus 161 ~HPnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g 240 (242)
|||||+.+|.||+++|.. .++|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++|+++|.++||+|++.++
T Consensus 85 ~HPnv~~~G~iCl~iL~~----~~~W~p~~~i~~vl~~i~~ll~~-p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a 159 (161)
T 2grr_A 85 FHPNVYPSGTVCLSILEE----DKDWRPAITIKQILLGIQELLNE-PNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159 (161)
T ss_dssp CSTTBCTTSBBCCGGGCT----TTTCCTTCCHHHHHHHHHHHHHS-CCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred ccCCCCCCCeEeehhcCC----CCCcCCCCcHHHHHHHHHHHHhC-CCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence 999999999999999985 34799999999999999999998 9999999999999999999999999999998775
Q ss_pred C
Q psy4609 241 I 241 (242)
Q Consensus 241 ~ 241 (242)
.
T Consensus 160 ~ 160 (161)
T 2grr_A 160 P 160 (161)
T ss_dssp C
T ss_pred c
Confidence 3
No 26
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=1.1e-42 Score=284.73 Aligned_cols=147 Identities=29% Similarity=0.574 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEEcCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccccC
Q psy4609 88 IRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINE 167 (242)
Q Consensus 88 ~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~~ 167 (242)
.+.+||++|+++|+++++.|+++..+++++++.|+++|.|++|||+||+|+|+|.||++||++||+|+|.|++|||||+.
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~ 83 (155)
T 1wzv_A 4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE 83 (155)
T ss_dssp -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEECCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCC
Confidence 35789999999999999999999557788999999998899999999999999999999999999999999999999999
Q ss_pred CCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccC
Q psy4609 168 NGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEG 240 (242)
Q Consensus 168 ~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g 240 (242)
+|.||+++|.. ++|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++|+++|.++||+|++.++
T Consensus 84 ~G~iCl~iL~~-----~~W~p~~~i~~vl~~i~~ll~~-p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a 150 (155)
T 1wzv_A 84 NGQICLPIISS-----ENWKPCTKTCQVLEALNVLVNR-PNIREPLRMDLADLLTQNPELFRKNAEEFTLRFG 150 (155)
T ss_dssp TCBCCCGGGCT-----TTCCTTCCHHHHHHHHHHHHHS-CCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCeEeecCCCc-----cCCCCCCcHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999942 2899999999999999999998 9999999999999999999999999999998765
No 27
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=1.1e-42 Score=298.62 Aligned_cols=150 Identities=29% Similarity=0.589 Sum_probs=141.2
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccc
Q psy4609 84 KRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWH 162 (242)
Q Consensus 84 ~~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~H 162 (242)
.+.+.+.+||++|+++|+++++.||++.+ .++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+|||
T Consensus 19 ~~~s~a~~RL~kEl~~l~~~~~~gi~~~p-~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~H 97 (216)
T 2pwq_A 19 FQGSKELLRLQKELKDIENENVQEIDAHI-KDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWH 97 (216)
T ss_dssp CCSCHHHHHHHHHHHHHHHSCTTTEEEEE-CSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred cccCHHHHHHHHHHHHHHhCCCCCEEEEE-cCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcC
Confidence 34667889999999999999999999964 567899999999 9999999999999999999999999999999999999
Q ss_pred cccc-CCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 163 PNIN-ENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 163 PnV~-~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
|||+ .+|.||+++|.. +|+|+++|.+||.+|+++|.+ |+++||+|.+||++|++|+++|.++||+|++.+++
T Consensus 98 PNI~~~~G~ICL~iL~~------~WsP~~ti~~VL~sI~sLL~~-Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~ 170 (216)
T 2pwq_A 98 PNISSQTGAICLDVLKN------EWSPALTIRTALLSIQALLSD-PQPDDPQDAEVAKMYKENHALFVKTASVWTKTFAT 170 (216)
T ss_dssp TTBCTTTCBBCCHHHHH------HCCTTCCHHHHHHHHHHHHHS-CCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred CCCcCCCCEEEchhhcc------cCCCCCcHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9999 699999999986 799999999999999999999 99999999999999999999999999999987764
No 28
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=3.3e-42 Score=282.92 Aligned_cols=148 Identities=30% Similarity=0.591 Sum_probs=137.8
Q ss_pred chHHHHHHHHHHHHHHhC---CCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccc
Q psy4609 86 IFIRDKLLIKEVQEMEQN---LPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLW 161 (242)
Q Consensus 86 ~s~~~~RL~~E~~~l~~~---~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~ 161 (242)
++.+.+||++|+++|+++ ++.|+++.+ .++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||
T Consensus 6 s~~a~~RL~kEl~~l~~~~~~~~~~i~~~~-~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 84 (159)
T 2bep_A 6 ANIAVQRIKREFKEVLKSEETSKNQIKVDL-VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 84 (159)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHTTSEEEEE-CSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCEEEEe-CCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence 346789999999999985 578999965 557899999998 999999999999999999999999999999999999
Q ss_pred ccccc-CCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccC
Q psy4609 162 HPNIN-ENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEG 240 (242)
Q Consensus 162 HPnV~-~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g 240 (242)
||||+ .+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++|+++|.++||+|++.++
T Consensus 85 HPni~~~~G~iCl~iL~~------~W~p~~~i~~vl~~i~~ll~~-p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 157 (159)
T 2bep_A 85 HPNISSVTGAICLDILKD------QWAAAMTLRTVLLSLQALLAA-AEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 157 (159)
T ss_dssp BTTBCTTTCBBCCGGGTT------TCCTTCCHHHHHHHHHHHHHS-CCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred ccCCCCCCCEEeChhhhc------cCCCCCcHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 99999 599999999985 899999999999999999999 8999999999999999999999999999998765
Q ss_pred C
Q psy4609 241 I 241 (242)
Q Consensus 241 ~ 241 (242)
.
T Consensus 158 ~ 158 (159)
T 2bep_A 158 G 158 (159)
T ss_dssp C
T ss_pred c
Confidence 3
No 29
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-42 Score=289.88 Aligned_cols=147 Identities=23% Similarity=0.395 Sum_probs=137.1
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccc
Q psy4609 85 RIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHP 163 (242)
Q Consensus 85 ~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HP 163 (242)
....+.+||++|+++|+++++.||++. +++++++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus 27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~-p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP 105 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMMSGDKGISAF-PESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHP 105 (179)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTEEEE-EETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCST
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEE-EcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccC
Confidence 456788999999999999999999995 5677999999988 99999999999999999999999999999999999999
Q ss_pred cccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccC
Q psy4609 164 NINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEG 240 (242)
Q Consensus 164 nV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g 240 (242)
||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.+||++| +|+++|.++|+++++.+.
T Consensus 106 NV~~~G~ICL~iL~~------~WsP~~ti~~vL~sI~sll~~-Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~ 174 (179)
T 1i7k_A 106 NVDTQGNISLDILKE------KWSALYDVRTILLSIQSLLGE-PNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQV 174 (179)
T ss_dssp TBCTTCBBCCGGGTT------TCCTTCCHHHHHHHHHHHHHS-CCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTC
T ss_pred ccccCCeEEcccCcC------cCCCCCCHHHHHHHHHHHHhC-CCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHh
Confidence 999999999999975 899999999999999999998 999999999999999 999999999999988653
No 30
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=2.3e-42 Score=292.06 Aligned_cols=147 Identities=27% Similarity=0.558 Sum_probs=135.1
Q ss_pred chHHHHHHHHHHHHHHhCCC-------------CCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCC
Q psy4609 86 IFIRDKLLIKEVQEMEQNLP-------------NTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAP 151 (242)
Q Consensus 86 ~s~~~~RL~~E~~~l~~~~~-------------~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~p 151 (242)
...+.+||++|+++|+++++ .||++.+ .++|++.|+++| ||++|||+||+|+|+|.||++||++|
T Consensus 30 ~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~-~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~P 108 (193)
T 2f4z_A 30 TPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQI-VGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNP 108 (193)
T ss_dssp --CHHHHHHHHHHHHHHC----------------CEEEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred CCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEE-cCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCC
Confidence 45678999999999999887 7999975 457899999999 99999999999999999999999999
Q ss_pred CeEEEeccccccccc-CCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHH
Q psy4609 152 PKVKCLTKLWHPNIN-ENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRE 230 (242)
Q Consensus 152 P~V~f~t~i~HPnV~-~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~ 230 (242)
|+|+|.|+||||||+ .+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++|+++|.+
T Consensus 109 P~V~F~T~i~HPNI~~~~G~ICL~iL~~------~WsP~~ti~~vL~sI~sll~~-pnp~~P~n~~aa~l~~~d~~~f~~ 181 (193)
T 2f4z_A 109 PKMKFVTKIWHPNISSQTGAICLDILKH------EWSPALTIRTALLSIQAMLAD-PVPTDPQDAEVAKMMIENHPLFVQ 181 (193)
T ss_dssp CEEEESSCCCBTTBCTTTCBBCCGGGTT------TCCTTSCHHHHHHHHHHHHHS-CCTTSCSCHHHHHHHHHCHHHHHH
T ss_pred CeEEEecCCccCCCcCCCCEEECccccc------cCCCCCCHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHCHHHHHH
Confidence 999999999999999 699999999986 799999999999999999999 999999999999999999999999
Q ss_pred HHHHHHhccC
Q psy4609 231 RARCLEFGEG 240 (242)
Q Consensus 231 ~vr~~~~~~g 240 (242)
+||+|++.++
T Consensus 182 ~ar~~t~~ya 191 (193)
T 2f4z_A 182 TAKLWTETFA 191 (193)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHc
Confidence 9999998765
No 31
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=5.6e-43 Score=300.20 Aligned_cols=147 Identities=31% Similarity=0.582 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccccccc
Q psy4609 88 IRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNIN 166 (242)
Q Consensus 88 ~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~ 166 (242)
.+.+||++|+++|+++++.||++.+.++++++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~ 81 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence 46799999999999999999999766666788999998 99999999999999999999999999999999999999999
Q ss_pred C-CCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 167 E-NGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 167 ~-~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
. +|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.+||++|.+|++.|.++||.|++.+++
T Consensus 82 ~~~G~ICL~iL~~------~WsP~~ti~~VL~sI~sLL~~-Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~ 150 (215)
T 1tte_A 82 SVTGAICLDILRN------AWSPVITLKSALISLQALLQS-PEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 150 (215)
T ss_dssp SSSSCCCSSTTTC------CSCTTCCHHHHHHHHHHHHTS-CCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSC
T ss_pred CCCCEEECccCCC------CCCCcCcHHHHHHHHHHHHhC-CCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 8 99999999986 899999999999999999999 99999999999999999999999999999987764
No 32
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3e-42 Score=285.87 Aligned_cols=146 Identities=25% Similarity=0.453 Sum_probs=136.3
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccc
Q psy4609 85 RIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHP 163 (242)
Q Consensus 85 ~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HP 163 (242)
..+.+.+||++|+++|+++++.||++. +.++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus 20 M~~~a~~RL~kEl~~l~~~~~~gi~~~-p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP 98 (169)
T 1yrv_A 20 MHGRAYLLLHRDFCDLKENNYKGITAK-PVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHP 98 (169)
T ss_dssp GGCHHHHHHHHHHHHHHHHCCTTEEEE-ECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEE-EcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccC
Confidence 455788999999999999999999995 5668899999999 99999999999999999999999999999999999999
Q ss_pred cc-cCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHh
Q psy4609 164 NI-NENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEF 237 (242)
Q Consensus 164 nV-~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~ 237 (242)
|| +.+|.||+++|.. +++|+|+++|.+||.+|+++|.+ |++++|+|.|||++|++|+++|.++ +++++
T Consensus 99 NI~~~~G~ICL~iL~~----~~~WsP~~ti~~vL~sI~sll~~-Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~ 167 (169)
T 1yrv_A 99 NVDPHTGQPCIDFLDN----PEKWNTNYTLSSILLALQVMLSN-PVLENPVNLEAARILVKDESLYRTI-LRLFN 167 (169)
T ss_dssp TBCTTTCCBCCHHHHC----GGGCCTTCCHHHHHHHHHHHHTS-CCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC
T ss_pred cccCCCCeEeehhhcC----CcCCCCcCCHHHHHHHHHHHHhC-CCCCCchhHHHHHHHHHCHHHHHHH-HHHhh
Confidence 99 7999999999982 23899999999999999999999 8999999999999999999999999 88775
No 33
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=1.2e-42 Score=284.12 Aligned_cols=147 Identities=29% Similarity=0.533 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEEcCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccccCC
Q psy4609 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINEN 168 (242)
Q Consensus 89 ~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~~~ 168 (242)
+.+||++|+++|+++++.|+.+..+++++++.|+++|.|++|||+||+|+|+|.||++||++||+|+|.|++|||||+.+
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 82 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEK 82 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEeCCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCCC
Confidence 45799999999999999999875567889999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 169 GDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 169 G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
|.||+++|.. ++|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++|+++|.++||+|++.+++
T Consensus 83 G~iCl~iL~~-----~~W~p~~~i~~vl~~i~~ll~~-p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 149 (154)
T 1c4z_D 83 GQVCLPVISA-----ENWKPATKTDQVIQSLIALVND-PQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149 (154)
T ss_dssp CBBCCTTTSS-----SSCCTTCCHHHHHHHHHHHHHS-CCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC--
T ss_pred CEEECCCCCC-----CCCCCCCcHHHHHHHHHHHHcC-CCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 9999999974 2899999999999999999998 89999999999999999999999999999987763
No 34
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=7.6e-42 Score=290.68 Aligned_cols=146 Identities=31% Similarity=0.612 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHHHHHhC---CCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccc
Q psy4609 87 FIRDKLLIKEVQEMEQN---LPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWH 162 (242)
Q Consensus 87 s~~~~RL~~E~~~l~~~---~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~H 162 (242)
+.+.+||++|+++|+++ ++.||++.+ .+++++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 4 ~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~-~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 82 (201)
T 3k9o_A 4 NIAVQRIKREFKEVLKSEETSKNQIKVDL-VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWH 82 (201)
T ss_dssp CTTHHHHHHHHHHHHTCHHHHTTSEEEEE-CSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCEEEEE-CCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCccc
Confidence 45689999999999986 367999964 567899999999 9999999999999999999999999999999999999
Q ss_pred cccc-CCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccC
Q psy4609 163 PNIN-ENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEG 240 (242)
Q Consensus 163 PnV~-~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g 240 (242)
|||+ .+|.||+++|.. +|+|+++|.+||.+|+++|.+ |+++||+|.+||++|++|+++|.++||+|++.++
T Consensus 83 Pnv~~~~G~iCl~iL~~------~W~p~~~i~~vL~~i~~ll~~-p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 154 (201)
T 3k9o_A 83 PNISSVTGAICLDILKD------QWAAAMTLRTVLLSLQALLAA-AEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 154 (201)
T ss_dssp TTBCTTTCBBCCGGGTT------TCCTTCCHHHHHHHHHHHHHS-CCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCeeeCccccc------CCCCCCCHHHHHHHHHHHhcC-CCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 9999 599999999975 899999999999999999999 9999999999999999999999999999998664
No 35
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=9.2e-41 Score=277.68 Aligned_cols=148 Identities=19% Similarity=0.405 Sum_probs=134.0
Q ss_pred chHHHHHHHHHHHHHHh-C-C------CC---CeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCe
Q psy4609 86 IFIRDKLLIKEVQEMEQ-N-L------PN---TCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPK 153 (242)
Q Consensus 86 ~s~~~~RL~~E~~~l~~-~-~------~~---gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~ 153 (242)
.+.+.+||++|+++|++ . + +. ++.+...+++|++.|+++| ||++|||+||+|+|+|.||++||++||+
T Consensus 4 s~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~ 83 (172)
T 2y9m_A 4 ADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPK 83 (172)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCE
T ss_pred cHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCE
Confidence 35688999999999998 4 3 33 3455322788999999988 9999999999999999999999999999
Q ss_pred EEEec-cccccccc-CCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHH-CHHHHHH
Q psy4609 154 VKCLT-KLWHPNIN-ENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQK-NKELFRE 230 (242)
Q Consensus 154 V~f~t-~i~HPnV~-~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~-d~~~f~~ 230 (242)
|+|.| +||||||+ .+|.||+++|.. ++|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++ |+++|.+
T Consensus 84 v~f~t~~i~HPni~~~~G~iCl~iL~~-----~~W~p~~~i~~vL~si~~ll~~-p~~~~p~n~~aa~~~~~~d~~~f~~ 157 (172)
T 2y9m_A 84 ISFMQNNILHCNVKSATGEICLNILKP-----EEWTPVWDLLHCVHAVWRLLRE-PVCDSPLDVDIGNIIRCGDMSAYQG 157 (172)
T ss_dssp EEECTTSCCCTTEETTTTEECCGGGST-----TTCCTTCCHHHHHHHHHHHHHS-CCTTSCSSHHHHHHHTTTCHHHHHH
T ss_pred EEEeeCCeecCCCcCCCCEEeccccCC-----CCCCCcCcHHHHHHHHHHHHhC-CCCCCccCHHHHHHHHhCCHHHHHH
Confidence 99999 99999996 899999999983 2899999999999999999999 89999999999999999 9999999
Q ss_pred HHHHHHhcc
Q psy4609 231 RARCLEFGE 239 (242)
Q Consensus 231 ~vr~~~~~~ 239 (242)
+||+|++++
T Consensus 158 ~~~~~~~~~ 166 (172)
T 2y9m_A 158 IVKYFLAER 166 (172)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999865
No 36
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=7.3e-41 Score=293.21 Aligned_cols=148 Identities=30% Similarity=0.598 Sum_probs=138.3
Q ss_pred cchHHHHHHHHHHHHHHhC---CCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccc
Q psy4609 85 RIFIRDKLLIKEVQEMEQN---LPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKL 160 (242)
Q Consensus 85 ~~s~~~~RL~~E~~~l~~~---~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i 160 (242)
..+.+.+||++|+++|+++ ++.||++.+ .++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+|
T Consensus 54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p-~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i 132 (253)
T 3e46_A 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDL-VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI 132 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEE-CSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCCEEEEE-CCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCC
Confidence 3567899999999999986 467999964 567899999999 99999999999999999999999999999999999
Q ss_pred cccccc-CCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhcc
Q psy4609 161 WHPNIN-ENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGE 239 (242)
Q Consensus 161 ~HPnV~-~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~ 239 (242)
|||||+ .+|.||+++|.. +|+|+++|.+||.+|+++|.+ |+++||+|.+||++|++|+++|.++||+|++.+
T Consensus 133 ~HPNV~~~~G~ICL~iL~~------~WsP~~ti~~vL~sI~~ll~~-pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~y 205 (253)
T 3e46_A 133 WHPNISSVTGAICLDILKD------QWAAAMTLRTVLLSLQALLAA-AEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 205 (253)
T ss_dssp CBTTBCTTTCBBCCGGGTT------CCCTTCCHHHHHHHHHHHHHS-CCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred ccCCccCCCCeeecccccC------CCCCCCCHHHHHHHHHHHhcC-CCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 999999 599999999975 899999999999999999999 999999999999999999999999999999866
Q ss_pred C
Q psy4609 240 G 240 (242)
Q Consensus 240 g 240 (242)
+
T Consensus 206 A 206 (253)
T 3e46_A 206 A 206 (253)
T ss_dssp H
T ss_pred c
Confidence 4
No 37
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=1.4e-41 Score=277.37 Aligned_cols=142 Identities=25% Similarity=0.480 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccccccc-
Q psy4609 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNIN- 166 (242)
Q Consensus 89 ~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~- 166 (242)
+.+||++|+++|++. |+++.+ .+++++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus 3 a~~Rl~kEl~~l~~~---~~~v~~-~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~ 78 (152)
T 2onu_A 3 SLTRKQCDFTKLIMA---GYDLEL-NNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDE 78 (152)
T ss_dssp CCCHHHHTHHHHHHH---TCCEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHhcCcC---CCEEEE-ccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcC
Confidence 347999999999874 788864 468899999999 99999999999999999999999999999999999999999
Q ss_pred CCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHH-HHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 167 ENGDICLSLLRQNSIDGLGWAPTRKLKDVIWG-LNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 167 ~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~-I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
.+|.||+++|.. +|+|+++|.+||.+ |++||.+ |++++|+|.+||++|++|+++|.++||+|++.+++
T Consensus 79 ~~G~iCl~il~~------~W~p~~~i~~vl~~ii~~Ll~~-Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~ 147 (152)
T 2onu_A 79 ASGSVCLDVINQ------TWTPLYSLVNVFEVFLPQLLTY-PNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYAS 147 (152)
T ss_dssp TTCBBCHHHHHH------HCCTTCCHHHHHHTHHHHHHHS-CCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred cCCeEecccccc------cCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 599999999985 89999999999999 6899998 99999999999999999999999999999987764
No 38
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.4e-41 Score=280.02 Aligned_cols=143 Identities=24% Similarity=0.478 Sum_probs=133.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccc
Q psy4609 87 FIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNI 165 (242)
Q Consensus 87 s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV 165 (242)
+.+.+||++|+++|+. .|+++.+. ++++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||
T Consensus 24 ~~a~~RL~kEl~~l~~---~g~~v~~~--ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV 98 (179)
T 2z5d_A 24 SPGKRRMDTDVIKLIE---SKHEVTIL--GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNI 98 (179)
T ss_dssp CHHHHHHHHHHHHHHH---SSSCEEEE--EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred hHHHHHHHHHHHhcCc---CCCEEEEC--CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcC
Confidence 4688999999999984 57888654 4689999988 9999999999999999999999999999999999999999
Q ss_pred cC-CCcEEeeCCCCCCCCCCCCCCcCCHHHHHHH-HHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 166 NE-NGDICLSLLRQNSIDGLGWAPTRKLKDVIWG-LNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 166 ~~-~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~-I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
+. +|.||+++|.. +|+|+++|.+||.+ |+++|.+ |++++|+|.+||++|++|+++|.++||+|++.+++
T Consensus 99 ~~~~G~ICL~iL~~------~WsP~~ti~~iL~s~I~~Ll~~-Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~ 169 (179)
T 2z5d_A 99 DEASGTVCLDVINQ------TWTALYDLTNIFESFLPQLLAY-PNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT 169 (179)
T ss_dssp CTTTCBBCHHHHHH------HCCTTCCTTHHHHTHHHHHHHS-CCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCeEecccccc------CCCCCCCHHHHHHHHHHHHHhC-CCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 98 99999999985 89999999999999 9999998 99999999999999999999999999999987764
No 39
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-40 Score=275.49 Aligned_cols=144 Identities=19% Similarity=0.432 Sum_probs=130.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccccc
Q psy4609 86 IFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPN 164 (242)
Q Consensus 86 ~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPn 164 (242)
...+.+||++|+++|++++. + + . .+++++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+|||||
T Consensus 10 ~~~~~~RL~~El~~l~~~~~-~--v-~-~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPN 84 (171)
T 1yf9_A 10 NLRSNRRREMDYMRLCNSTR-K--V-Y-PSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPN 84 (171)
T ss_dssp ---CCHHHHHHHHHHHSSSS-C--E-E-ECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTT
T ss_pred cccHHHHHHHHHHHHHhCCC-C--C-C-CCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCccccc
Confidence 34567999999999998763 3 3 2 467899999998 999999999999999999999999999999999999999
Q ss_pred cc-CCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHH-HHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 165 IN-ENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGL-NSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 165 V~-~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I-~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
|+ .+|.||+++|.. +|+|+++|.+||.+| ++||.+ |++++|+|.+||++|++|+++|.++||+|++.+++
T Consensus 85 i~~~~G~iCl~iL~~------~W~p~~~i~~vL~sil~~ll~~-Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~ 156 (171)
T 1yf9_A 85 VDERSGSVCLDVINQ------TWTPMYQLENIFDVFLPQLLRY-PNPSDPLNVQAAHLLHADRVGFDALLREHVSTHAT 156 (171)
T ss_dssp BCTTTCBBCHHHHHH------HCCTTCCTHHHHHTHHHHHHHS-CCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CcccCCeEecccccc------CCCCCCcHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 99 599999999986 899999999999997 789988 99999999999999999999999999999987654
No 40
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=2e-39 Score=301.31 Aligned_cols=147 Identities=31% Similarity=0.621 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccc
Q psy4609 87 FIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNI 165 (242)
Q Consensus 87 s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV 165 (242)
+.+.+||++|+++|+++++.|+++. +.++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~-p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 80 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 80 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEE-EETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTB
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEE-EcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecccccccc
Confidence 4688999999999999999999996 5668899999999 9999999999999999999999999999999999999999
Q ss_pred cCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHhccCC
Q psy4609 166 NENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCLEFGEGI 241 (242)
Q Consensus 166 ~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d~~~f~~~vr~~~~~~g~ 241 (242)
+.+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.+||++|.+|+++|.++||+|++.+++
T Consensus 81 ~~~G~iCl~il~~------~W~p~~~i~~vL~~i~~ll~~-pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~ 149 (399)
T 4ddg_A 81 NSNGSISLDILRS------QWSPALTISKVLLSICSLLCD-PNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 149 (399)
T ss_dssp CTTCBBCCGGGTT------SCCTTCCHHHHHHHHHHHHHS-CCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTS
T ss_pred CCCCeEeCccccc------CCCccccHHHHHHHHHHHHcC-CCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence 9999999999975 899999999999999999999 99999999999999999999999999999997764
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=4.5e-39 Score=266.29 Aligned_cols=142 Identities=24% Similarity=0.465 Sum_probs=128.4
Q ss_pred chHHHHHHHHHHHHHHhCC------------CCCeEEEecCCCCceeEEEEE-cCCCcccC--CCEEEEEEEcCCCCCCC
Q psy4609 86 IFIRDKLLIKEVQEMEQNL------------PNTCKTKFTNPNHLHEFTIVI-SPDEGYWR--GGKFLFSVSVPEEYNMA 150 (242)
Q Consensus 86 ~s~~~~RL~~E~~~l~~~~------------~~gi~v~~~~~~~l~~w~~~i-gp~~tpye--gg~f~~~i~fp~~YP~~ 150 (242)
++.+.+||++|+++|++++ +.++.+. ++++|++.|+++| ||++|||+ ||+|+|+|.||++||++
T Consensus 6 s~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~-~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~ 84 (167)
T 4ds2_A 6 KNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFS-VDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHE 84 (167)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEE-EEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTS
T ss_pred cHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEE-eCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCC
Confidence 3456789999999999877 6788885 6778999999999 89999999 99999999999999999
Q ss_pred CCeEEEecccccccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHH-HHHHHhcc-CCCCCCcccHHHHHHHHHCHHHH
Q psy4609 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIW-GLNSLFTD-LLNFDDPLNIEAAEMYQKNKELF 228 (242)
Q Consensus 151 pP~V~f~t~i~HPnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~-~I~~ll~~-~p~~~dP~N~eAa~~~~~d~~~f 228 (242)
||+|+|.|++|||||+.+|.||+++|.. +|+|++++.+||. .|++++.. .|++++|+|.|||++|++|+++|
T Consensus 85 pP~v~f~t~i~HPnv~~~G~iCl~il~~------~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f 158 (167)
T 4ds2_A 85 PPTVRFVTPVYSPLVTGEGGICDRMVND------FWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDF 158 (167)
T ss_dssp CCEEEESSCCCCSSCCTTSCCCTHHHHT------TCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHH
T ss_pred CCEEEEeCCcccccCCCCCEEEcccCcC------CCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHH
Confidence 9999999999999999999999999975 8999999999765 56677764 27999999999999999999999
Q ss_pred HHHHHH
Q psy4609 229 RERARC 234 (242)
Q Consensus 229 ~~~vr~ 234 (242)
.++||+
T Consensus 159 ~~~vrr 164 (167)
T 4ds2_A 159 AARVRR 164 (167)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 999983
No 42
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=3.4e-38 Score=258.34 Aligned_cols=133 Identities=16% Similarity=0.303 Sum_probs=120.8
Q ss_pred ccchHHHHHHHHHHHHHHhC-CCCCeEEEecCCC--CceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecc
Q psy4609 84 KRIFIRDKLLIKEVQEMEQN-LPNTCKTKFTNPN--HLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTK 159 (242)
Q Consensus 84 ~~~s~~~~RL~~E~~~l~~~-~~~gi~v~~~~~~--~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~ 159 (242)
.....+.+||++|+++|+++ ++.|+++.+.+++ +++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+
T Consensus 17 ~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~ 96 (156)
T 2q0v_A 17 QGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 96 (156)
T ss_dssp SSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcc
Confidence 44577889999999999998 7889999775533 599999999 9999999999999999999999999999999999
Q ss_pred cccccccCCCcE---EeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHC
Q psy4609 160 LWHPNINENGDI---CLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKN 224 (242)
Q Consensus 160 i~HPnV~~~G~i---Cl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~d 224 (242)
||||||+.+|+| |+++|+ +|+|+++|++||.+|+++|.+ |++++|+|++||++|.+|
T Consensus 97 i~HPNV~~~G~icisCL~iL~-------~WsP~~ti~~vL~sI~~ll~~-Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 97 IEMSCVDNCGRVIKNNLHILK-------NWNRNYTIETILISLRQEMLS-SANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp CCCTTBCTTSBBCGGGSHHHH-------TCCTTCCHHHHHHHHHHHTTS-TTTTTCCCCCTTCBC---
T ss_pred cccCCCccCCeEehhhccccc-------CCCCcCcHHHHHHHHHHHHhC-CCCCCcCChHHHHHhhhC
Confidence 999999999999 898886 599999999999999999999 899999999999998764
No 43
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=2.8e-37 Score=253.75 Aligned_cols=129 Identities=20% Similarity=0.289 Sum_probs=117.7
Q ss_pred chHHHHHHHHHHHHHHhCCCCC-eEEEecCCCC--ceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccc
Q psy4609 86 IFIRDKLLIKEVQEMEQNLPNT-CKTKFTNPNH--LHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLW 161 (242)
Q Consensus 86 ~s~~~~RL~~E~~~l~~~~~~g-i~v~~~~~~~--l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~ 161 (242)
...+.+||++|+++|+++++.| +.+.++++++ ++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus 23 ~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~ 102 (160)
T 2a4d_A 23 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN 102 (160)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred echHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCce
Confidence 4678899999999999998888 7776656654 89999998 999999999999999999999999999999999999
Q ss_pred ccccc-CCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHH
Q psy4609 162 HPNIN-ENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAA 218 (242)
Q Consensus 162 HPnV~-~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa 218 (242)
||||+ .+|+||+++|... ++|+|+++|++||.+|+++|.+.||+++|+|.|||
T Consensus 103 HPNV~~~~G~ICl~iL~~~----~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 103 MNGVNSSNGVVDPRAISVL----AKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp CTTBCTTTCBBCGGGSHHH----HTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred eCCEECCCCEEehhhcCCc----cCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 99999 7999999999721 28999999999999999999766999999999987
No 44
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=4.4e-37 Score=276.76 Aligned_cols=157 Identities=21% Similarity=0.376 Sum_probs=139.0
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCC----eEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEec
Q psy4609 84 KRIFIRDKLLIKEVQEMEQNLPNT----CKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLT 158 (242)
Q Consensus 84 ~~~s~~~~RL~~E~~~l~~~~~~g----i~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t 158 (242)
..+..+.+||++|+++|++++|.| +.+. +++++++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|
T Consensus 72 ~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~-~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T 150 (323)
T 3ceg_A 72 ANSAARARRLAQEAVTLSTSLPLSSSSSVFVR-CDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLET 150 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEE-EESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCcccceeec-ccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEec
Confidence 346788999999999999998875 4443 5678899999988 999999999999999999999999999999999
Q ss_pred c-----cccccccCCCcEEeeCCCCC-CCCCCCCCCcC-CHHHHHHHHHHHhc-cCCCCCCcccHHH--HHHHHHCHHHH
Q psy4609 159 K-----LWHPNINENGDICLSLLRQN-SIDGLGWAPTR-KLKDVIWGLNSLFT-DLLNFDDPLNIEA--AEMYQKNKELF 228 (242)
Q Consensus 159 ~-----i~HPnV~~~G~iCl~~L~~~-~~~~~~W~p~~-~l~~vl~~I~~ll~-~~p~~~dP~N~eA--a~~~~~d~~~f 228 (242)
+ ||||||+.+|.||+++|+.+ |..+++|+|++ +|.+||.+|++||. ..|++++|+|.+| +.+|.+|++.|
T Consensus 151 ~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y 230 (323)
T 3ceg_A 151 TGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREY 230 (323)
T ss_dssp STTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHH
T ss_pred cCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHH
Confidence 8 99999999999999999853 33346899999 89999999999996 2378899999987 67899999999
Q ss_pred HHHHHHHHhccCC
Q psy4609 229 RERARCLEFGEGI 241 (242)
Q Consensus 229 ~~~vr~~~~~~g~ 241 (242)
.++||.|++.++|
T Consensus 231 ~~~vr~~t~k~A~ 243 (323)
T 3ceg_A 231 DGNIRQATVKWAM 243 (323)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988775
No 45
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=1.8e-37 Score=249.23 Aligned_cols=127 Identities=18% Similarity=0.378 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHHHHhC-CCCCeEEEecCCC--CceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccccc
Q psy4609 87 FIRDKLLIKEVQEMEQN-LPNTCKTKFTNPN--HLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWH 162 (242)
Q Consensus 87 s~~~~RL~~E~~~l~~~-~~~gi~v~~~~~~--~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~H 162 (242)
..+.+||++|+++|+++ ++.|+++.+.+++ +++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 5 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 84 (138)
T 1jat_B 5 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL 84 (138)
T ss_dssp CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEccccc
Confidence 46779999999999998 6889999775543 599999988 9999999999999999999999999999999999999
Q ss_pred ccccCC-CcE--EeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q psy4609 163 PNINEN-GDI--CLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMY 221 (242)
Q Consensus 163 PnV~~~-G~i--Cl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~ 221 (242)
|||+.+ |.| |+++|+ +|+|+++|++||.+|+++|.+ |++++|+|++||.+|
T Consensus 85 Pnv~~~~G~i~~cL~~l~-------~W~p~~~i~~vl~~i~~ll~~-pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 85 PCVNPTTGEVQTDFHTLR-------DWKRAYTMETLLLDLRKEMAT-PANKKLRQPKEGETF 138 (138)
T ss_dssp TTBCTTTCBBCTTSHHHH-------TCCTTCCHHHHHHHHHHHHTS-HHHHTSCCCCTTCBC
T ss_pred CCEeCCCCEEeeecccCC-------CCCCcCcHHHHHHHHHHHHcC-CCCCCCCCcchhhcC
Confidence 999986 999 999985 699999999999999999999 899999999998754
No 46
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=252.42 Aligned_cols=129 Identities=20% Similarity=0.289 Sum_probs=117.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCC-eEEEecCCCC--ceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccc
Q psy4609 86 IFIRDKLLIKEVQEMEQNLPNT-CKTKFTNPNH--LHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLW 161 (242)
Q Consensus 86 ~s~~~~RL~~E~~~l~~~~~~g-i~v~~~~~~~--l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~ 161 (242)
...+.+||++|+++|+++++.| +.+.++++++ ++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus 33 ~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~ 112 (170)
T 2hlw_A 33 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN 112 (170)
T ss_dssp CCCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCC
T ss_pred cCHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccc
Confidence 3568899999999999998888 6776556554 89999999 899999999999999999999999999999999999
Q ss_pred ccccc-CCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHH
Q psy4609 162 HPNIN-ENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAA 218 (242)
Q Consensus 162 HPnV~-~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa 218 (242)
||||+ .+|.||+++|... ++|+|+++|++||.+|+++|.+.||+++|+|.|||
T Consensus 113 HPNV~~~~G~ICl~iL~~~----~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 113 MNGVNSSNGVVDPRAISVL----AKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp CSSBCSSSCBBCTTTCHHH----HTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred cCCEeCCCCEEEhhhcCCC----CCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 99999 7999999999721 28999999999999999999877999999999987
No 47
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=3.6e-35 Score=235.29 Aligned_cols=117 Identities=21% Similarity=0.450 Sum_probs=109.1
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccc-c
Q psy4609 84 KRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKL-W 161 (242)
Q Consensus 84 ~~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i-~ 161 (242)
...+.+.+||++|+++|+++++.|+++. ++++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|++ |
T Consensus 16 ~~~~~~~~RL~kEl~~l~~~~~~~~~~~-~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~ 94 (136)
T 2h2y_A 16 YNLGNANYRIQKELNNFLKNPPINCTID-VHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPK 94 (136)
T ss_dssp CCTTSHHHHHHHHHHHHHHSCCTTEEEE-ECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCC
T ss_pred ccchHHHHHHHHHHHHHHhCCCCCeEEE-eccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCC
Confidence 3556788999999999999999999996 5678999999988 99999999999999999999999999999999996 9
Q ss_pred cccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCC
Q psy4609 162 HPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLN 208 (242)
Q Consensus 162 HPnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~ 208 (242)
||||+.+|+||+++|.. +|+|+++|.+||.+|+++|.+ |+
T Consensus 95 HPnv~~~G~ICl~iL~~------~WsP~~ti~~vL~si~sll~~-p~ 134 (136)
T 2h2y_A 95 HTHVYSNGDICLSVLGD------DYNPSLSISGLILSIISMLSS-AK 134 (136)
T ss_dssp CTTBCTTCCBCCGGGTT------TCCTTCCHHHHHHHHHHHHSS-SC
T ss_pred CCcCCCCCEEECccccC------CCCCCCcHHHHHHHHHHHHhC-cC
Confidence 99999999999999975 899999999999999999998 54
No 48
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=2.1e-35 Score=233.42 Aligned_cols=116 Identities=22% Similarity=0.458 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEeccc-cccc
Q psy4609 87 FIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKL-WHPN 164 (242)
Q Consensus 87 s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i-~HPn 164 (242)
+.+.+||++|+++|+++++.|+++. ++++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|++ ||||
T Consensus 5 ~~a~~RL~kEl~~l~~~~~~~~~~~-~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn 83 (125)
T 2fo3_A 5 GNANYRIQKELHNFLNNPPINCTLD-VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTH 83 (125)
T ss_dssp ----CHHHHHHHHHHHSCCTTEEEE-ECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTT
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEE-eCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCc
Confidence 4567899999999999999999996 4678999999988 99999999999999999999999999999999996 9999
Q ss_pred ccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCC
Q psy4609 165 INENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210 (242)
Q Consensus 165 V~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~ 210 (242)
|+.+|+||+++|.. +|+|+++|++||.+|+++|.+ |+.+
T Consensus 84 v~~~G~iCl~iL~~------~W~P~~~i~~vl~si~~ll~~-p~~~ 122 (125)
T 2fo3_A 84 VYSNGDICLSLLGD------DYNPSLSISGLVLSIISMLSS-AKEK 122 (125)
T ss_dssp BCTTSBBCCGGGTT------TCCTTCCHHHHHHHHHHHHC------
T ss_pred CCCCCEEEchhcCC------CCCCCCcHHHHHHHHHHHHhC-cccc
Confidence 99999999999975 899999999999999999998 5543
No 49
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.4e-34 Score=231.91 Aligned_cols=119 Identities=21% Similarity=0.413 Sum_probs=106.9
Q ss_pred CCccccchHHHHHHHHHHHHHHhCCCCCeEEE-ecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEe
Q psy4609 80 KSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTK-FTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCL 157 (242)
Q Consensus 80 ~~~~~~~s~~~~RL~~E~~~l~~~~~~gi~v~-~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~ 157 (242)
.......+...+||++|+++|+++++.|+++. .++++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.
T Consensus 14 ~~~~~~Ms~~~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~ 93 (136)
T 2a7l_A 14 LVPRGSMASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFT 93 (136)
T ss_dssp CCCGGGGTTSCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEE
T ss_pred cccchhccHHHHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEe
Confidence 33333444445999999999999999999874 26778999999998 99999999999999999999999999999999
Q ss_pred cccc--cccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhc
Q psy4609 158 TKLW--HPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFT 204 (242)
Q Consensus 158 t~i~--HPnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~ 204 (242)
|++| ||||+.+|+||+++|.. +|+|+++|++||.+|+++|.
T Consensus 94 T~i~~~HPNV~~~G~ICL~iL~~------~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 94 GENIPVHPHVYSNGHICLSILTE------DWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp SSCCCCBTTBCTTCBBCCGGGTT------TCCTTSCHHHHHHHHHHHTC
T ss_pred CCCcCCCccCCCCCeEEchhcCC------CCCCCCcHHHHHHHHHHHhC
Confidence 9999 99999999999999975 89999999999999999974
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=8.7e-33 Score=232.42 Aligned_cols=126 Identities=18% Similarity=0.328 Sum_probs=102.0
Q ss_pred CCccccchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEec
Q psy4609 80 KSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLT 158 (242)
Q Consensus 80 ~~~~~~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t 158 (242)
++++++.+.+.+||++|+++|+++++.||.+. ++++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|
T Consensus 6 ~~~~~~~~~a~~RL~kEl~~l~~~~~~~i~~~-p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T 84 (187)
T 2f4w_A 6 TSSKRAPTTATQRLKQDYLRIKKDPVPYICAE-PLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT 84 (187)
T ss_dssp --------CHHHHHHHHHHHHHHSCCTTEEEE-EETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS
T ss_pred cCCCCCccHHHHHHHHHHHHHHhCCCCCEEEE-EcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccC
Confidence 34446778899999999999999999999996 5678899999998 999999999999999999999999999999999
Q ss_pred ccccccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCc
Q psy4609 159 KLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDP 212 (242)
Q Consensus 159 ~i~HPnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP 212 (242)
+ ||||+.+|.||+++|..+ .++|+|+++|.+||.+|+++|.+ |+++..
T Consensus 85 ~--~~~~~~~G~ICL~iL~~~---~~~W~P~~ti~~vL~si~sll~~-p~p~~g 132 (187)
T 2f4w_A 85 P--NGRFKCNTRLCLSITDFH---PDTWNPAWSVSTILTGLLSFMVE-KGPTLG 132 (187)
T ss_dssp C--CSSBCTTSCBC-------------CCTTCCHHHHHHHHHHHHHS-CCCCTT
T ss_pred C--CceeccCCeEeeeccccC---ccCCCCcCcHHHHHHHHHHHhcC-CCCCCc
Confidence 9 999999999999999532 24899999999999999999998 787643
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.97 E-value=1.5e-33 Score=236.81 Aligned_cols=142 Identities=14% Similarity=0.301 Sum_probs=117.7
Q ss_pred CccccchHHHHHHHHHHHHHHhCC---CCCeEEEecCCCCceeEEEEE-cC-CCcccCC-----------CEEEEEEEcC
Q psy4609 81 SSNKRIFIRDKLLIKEVQEMEQNL---PNTCKTKFTNPNHLHEFTIVI-SP-DEGYWRG-----------GKFLFSVSVP 144 (242)
Q Consensus 81 ~~~~~~s~~~~RL~~E~~~l~~~~---~~gi~v~~~~~~~l~~w~~~i-gp-~~tpyeg-----------g~f~~~i~fp 144 (242)
++......+.+||++|+++|++++ +.++++. +.++|++.|+++| || ++|||+| |.|+|+|.||
T Consensus 20 g~~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~-p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp 98 (186)
T 1zuo_A 20 GAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVE-LINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFK 98 (186)
T ss_dssp ----CCHHHHHHHHHHHHHHHTSHHHHTTSEEEE-EETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred CcccccHHHHHHHHHHHHHHHhCCCCCCCcEEEE-EcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECC
Confidence 334456678899999999999988 6789986 4557999999999 87 8999998 8999999999
Q ss_pred CCCCCCCCeEEEecccccc-cccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHHH
Q psy4609 145 EEYNMAPPKVKCLTKLWHP-NINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQK 223 (242)
Q Consensus 145 ~~YP~~pP~V~f~t~i~HP-nV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~~ 223 (242)
++||++||+|+|.|++||| ||+.+|.||+++|... +|+|+++|++||.+|+++|.+ |++.. .|..
T Consensus 99 ~~YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~-----~WsP~~ti~~VL~sI~slL~~-p~a~~--------~~~~ 164 (186)
T 1zuo_A 99 DNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQ-----GWSSAYSIESVIMQINATLVK-GKARV--------QFGA 164 (186)
T ss_dssp TTTTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTT-----TCCTTSCHHHHHHHHHHHHHH-TTCEE--------CTTC
T ss_pred CCCCCCCCeEEEeCCccCCCccCCCCcEEeccCCCC-----CCCCcCcHHHHHHHHHHHHcC-CChhH--------hhcc
Confidence 9999999999999999999 6999999999999743 899999999999999999998 55431 2333
Q ss_pred CHHHHHHHHHHHHh
Q psy4609 224 NKELFRERARCLEF 237 (242)
Q Consensus 224 d~~~f~~~vr~~~~ 237 (242)
++.+|.+++++++.
T Consensus 165 ~~~~Y~~~~~~~~~ 178 (186)
T 1zuo_A 165 NKNQYNLARAQQSY 178 (186)
T ss_dssp CTTCCCHHHHHHHH
T ss_pred CHHHHhHHHHHHHH
Confidence 45666666665543
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.86 E-value=9.9e-23 Score=166.15 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=95.8
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCC----------EEEEEEEcCCCCCCCCC
Q psy4609 84 KRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGG----------KFLFSVSVPEEYNMAPP 152 (242)
Q Consensus 84 ~~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg----------~f~~~i~fp~~YP~~pP 152 (242)
+....-.+||++|++.|++. + .++.+++..|.+++ ||.+|+|+|| .|.++|.||++||++||
T Consensus 28 ~~~~~w~~RL~eE~k~L~k~------v-~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PP 100 (172)
T 2z6o_A 28 RDRELWVQRLKEEYQSLIRY------V-ENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAP 100 (172)
T ss_dssp TCTHHHHHHHHHHHHHHHHH------H-HHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCC
T ss_pred CccHHHHHHHHHHHHHHHHH------h-ccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCC
Confidence 44456689999999999982 4 24557888888888 9999999999 99999999999999999
Q ss_pred eEEEecc-cccccccCCCcEEeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q psy4609 153 KVKCLTK-LWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQ 222 (242)
Q Consensus 153 ~V~f~t~-i~HPnV~~~G~iCl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~~p~~~dP~N~eAa~~~~ 222 (242)
.|+|.+. +|||||+.+|+|||++|.... =..|+|+++|.++|.- -+. -++..|+..+..
T Consensus 101 eV~F~~~~~~hpnmY~~G~ICLdIL~kp~--Ws~~~P~~~IahiL~l---gl~------pwla~eip~lv~ 160 (172)
T 2z6o_A 101 EIAVPELDGKTAKMYRGGKICLTDHFKPL--WARNVPKFGLAHLMAL---GLG------PWLAVEIPDLIQ 160 (172)
T ss_dssp CCBCGGGTTTCSSBCTTSBBCCCTTHHHH--HHHHTTSCCHHHHHHH---THH------HHHHHHHHHHHH
T ss_pred eeeeCCCCCCCCCCCCCCcEechhhcccc--ccccCCccCHHHHHhh---ccC------chhhhhhHHHHH
Confidence 9999998 999999999999999994410 0134599999988732 111 156667766654
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.68 E-value=1e-16 Score=131.23 Aligned_cols=112 Identities=22% Similarity=0.317 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhCCC---CCeEEEecCCCCceeEEEEE-cCCCcccCCCE---EEEEEEcCCCCCCCCCeEEEecc----
Q psy4609 91 KLLIKEVQEMEQNLP---NTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGK---FLFSVSVPEEYNMAPPKVKCLTK---- 159 (242)
Q Consensus 91 ~RL~~E~~~l~~~~~---~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg~---f~~~i~fp~~YP~~pP~V~f~t~---- 159 (242)
++..+|+.++.+..+ +...+ +..+|....+.+.+ |.-..+|+||. |.+.|.||.+||++||.|.|.++
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~-yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m 109 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRV-FTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM 109 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEE-EECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCT
T ss_pred hHHHHHHHHHHHhCCCCceeeee-EEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccc
Confidence 345577776665544 22222 23334444444444 55558899999 88999999999999999988651
Q ss_pred ------cc-cccccCCCcEEeeCCCCCCCCCCCCCC-cCCHHHHHHHHHHHhccCCCCCC
Q psy4609 160 ------LW-HPNINENGDICLSLLRQNSIDGLGWAP-TRKLKDVIWGLNSLFTDLLNFDD 211 (242)
Q Consensus 160 ------i~-HPnV~~~G~iCl~~L~~~~~~~~~W~p-~~~l~~vl~~I~~ll~~~p~~~d 211 (242)
|+ |||||.+|+||+.+|. +|+| +.+|.++|.+|+++|.+ |+++.
T Consensus 110 ~~~~~~I~~hpnVD~~G~I~lpyL~-------~W~p~~s~L~~ll~~l~~lf~e-p~~d~ 161 (162)
T 3r3q_A 110 NTISSSLPIQEYIDSNGWIALPILH-------AWDPAAMNLIMVVQELMSLLHE-PPQDQ 161 (162)
T ss_dssp TTSCTTSTHHHHBCTTSBBCCGGGG-------SCCGGGCCHHHHHHHHHHTTSC-CCCCC
T ss_pred cccccccCCCCCCCCCCcEeCcccc-------cCCCCcCcHHHHHHHHHHHhcC-CCCCC
Confidence 77 9999999999999995 6999 67999999999999999 88874
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.52 E-value=1.5e-15 Score=121.33 Aligned_cols=85 Identities=16% Similarity=0.268 Sum_probs=68.4
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEE-cCCCcccCCC----------EEEEEEEcCCCCCCCCCe
Q psy4609 85 RIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGG----------KFLFSVSVPEEYNMAPPK 153 (242)
Q Consensus 85 ~~s~~~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~i-gp~~tpyegg----------~f~~~i~fp~~YP~~pP~ 153 (242)
....=.+||..||..|-+. |+....++- .|..++ ++.+|+|.|+ .|.+++.||.+||..||.
T Consensus 31 d~~~w~~RlkeEy~alI~y------v~~nK~~d~-dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPe 103 (168)
T 3kpa_A 31 DGDKWTARLKEEYASLITY------VEHNKASDS-HWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPE 103 (168)
T ss_dssp STHHHHHHHHHHHHHHHHH------HHHHHHTTC-CCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCC
T ss_pred CHHHHHHHHHHHHHHHHHH------HHhcccccC-CeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCE
Confidence 3345678999999998642 222222333 355555 9999999999 999999999999999999
Q ss_pred EEEecc-cccccccCCCcEEeeCC
Q psy4609 154 VKCLTK-LWHPNINENGDICLSLL 176 (242)
Q Consensus 154 V~f~t~-i~HPnV~~~G~iCl~~L 176 (242)
|+|.+. ++|||++.+|+|||+++
T Consensus 104 I~Fp~ldgkt~kmYr~GkICLdIh 127 (168)
T 3kpa_A 104 IALPELEGKTVKMYRGGKICMTTH 127 (168)
T ss_dssp CBCGGGTTTCSSEETTTEECCCTT
T ss_pred eecccccCcCccccCCCcEEeccc
Confidence 999995 89999999999999874
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.37 E-value=8.8e-13 Score=106.17 Aligned_cols=103 Identities=19% Similarity=0.284 Sum_probs=81.2
Q ss_pred HHHHHHHHhCCCC---CeEEEecCCCCceeEEEEEcCCCcccCCCEEEE--EEEcCCCCCCCCCeEEEecc------ccc
Q psy4609 94 IKEVQEMEQNLPN---TCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLF--SVSVPEEYNMAPPKVKCLTK------LWH 162 (242)
Q Consensus 94 ~~E~~~l~~~~~~---gi~v~~~~~~~l~~w~~~igp~~tpyegg~f~~--~i~fp~~YP~~pP~V~f~t~------i~H 162 (242)
.+|+..+.+..+. ....-.-...++..|.++|. .+|+|+.|.+ .|.||.+||++||.| |.++ ..|
T Consensus 26 ~~dv~~vl~~yp~L~p~~~~y~G~~~~LL~l~GtIp---v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~ 101 (146)
T 3obq_A 26 VRETVNVITLYKDLKPVLDSYGTGSRELMNLTGTIP---VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTG 101 (146)
T ss_dssp HHHHHHHHHHCTTEEEEEEESSSTTCEEEEEEEEEE---EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCB
T ss_pred HHHHHHHHHhCCCCceEeeeeeCChheEEEEEEEee---eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCC
Confidence 4677766665542 12221112357888888887 5799999995 899999999999999 6665 589
Q ss_pred ccccCCCcEEeeCCCCCCCCCCCCCC-cCCHHHHHHHHHHHhccCC
Q psy4609 163 PNINENGDICLSLLRQNSIDGLGWAP-TRKLKDVIWGLNSLFTDLL 207 (242)
Q Consensus 163 PnV~~~G~iCl~~L~~~~~~~~~W~p-~~~l~~vl~~I~~ll~~~p 207 (242)
||||.+|+||+..|. +|++ ..+|.+++..++++|.++|
T Consensus 102 ~~Vd~~G~i~lpyL~-------~W~~~~snL~~ll~~l~~~F~~ep 140 (146)
T 3obq_A 102 KHVDANGKIYLPYLH-------EWKHPQSDLLGLIQVMIVVFGDEP 140 (146)
T ss_dssp TTBCTTCBBCCHHHH-------TCCTTTCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCEeccccc-------ccCCCCCCHHHHHHHHHHHHhhCC
Confidence 999999999999996 6987 6799999999999998854
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.74 E-value=0.15 Score=38.78 Aligned_cols=66 Identities=15% Similarity=0.266 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEEcCCCc-ccCCCEEEEEEEcCCCCCCCCCeEEEec
Q psy4609 90 DKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEG-YWRGGKFLFSVSVPEEYNMAPPKVKCLT 158 (242)
Q Consensus 90 ~~RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~igp~~t-pyegg~f~~~i~fp~~YP~~pP~V~f~t 158 (242)
......|+..|+.-.+..+.+ . +. ....+.+.+.+..+ .-..-.+.+.|.+|++||..||.|.+.+
T Consensus 12 ~e~q~~EleaL~sIy~d~~~~-~-~~-~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 12 GEEQRNELEALESIYPDSFTV-L-SE-NPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHHCSSSEEE-C-CS-SSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHccCceEE-c-cC-CCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 445678999998877766655 2 21 23556666643321 1223478899999999999999998654
No 57
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.13 Score=39.76 Aligned_cols=67 Identities=9% Similarity=0.146 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCCCeEEEecCC------CCceeEEEEEcCCCcccCCCEEEEEEEcCCCCCCCCCeEEEec
Q psy4609 91 KLLIKEVQEMEQNLPNTCKTKFTNP------NHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLT 158 (242)
Q Consensus 91 ~RL~~E~~~l~~~~~~gi~v~~~~~------~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t 158 (242)
.+-..|+..|+.-.+..+.+ .... .....+.+.+.+..+.-..-.+.+.|.+|++||..||.|.+.+
T Consensus 13 e~q~~EleaL~SIY~d~~~~-~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 13 EIQCNELEAIRSIYMDDFTD-LTKRKSSWDKQPQIIFEITLRSVDKEPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp HHHHHHHHHHHTTSSSSEEC-CSTTSSSSCSSCCSCEEEEEECSSCSSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred HHHHHHHHHHHHHChhhhee-cccccccccCCCCcEEEEEEecCCCCCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 34567888888766655443 2211 1245677777554322123478899999999999999998754
No 58
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.57 E-value=0.23 Score=37.84 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCCC--CeEEEecCCCCceeEEEEEcCCCcccCCCEEEEEEEcCCCCCCCCCeEEEe
Q psy4609 93 LIKEVQEMEQNLPN--TCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCL 157 (242)
Q Consensus 93 L~~E~~~l~~~~~~--gi~v~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~ 157 (242)
...|+..|+.-.+. .+.+.-....+...+.+.+.+....=..-.+.+.|.+|++||..||.|.+.
T Consensus 12 q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 12 VQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMDADIPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp HHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred HHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence 46788888866553 444311111224577777754431111247899999999999999998754
No 59
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=94.56 E-value=0.24 Score=37.99 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEecCCC-----CceeEEEEEcCCCc--ccCCCEEEEEEEcCCCCCCCCCeEEEe
Q psy4609 90 DKLLIKEVQEMEQNLPNTCKTKFTNPN-----HLHEFTIVISPDEG--YWRGGKFLFSVSVPEEYNMAPPKVKCL 157 (242)
Q Consensus 90 ~~RL~~E~~~l~~~~~~gi~v~~~~~~-----~l~~w~~~igp~~t--pyegg~f~~~i~fp~~YP~~pP~V~f~ 157 (242)
......|+..|+.-.+..+.+ ..... ....+.+.+.+.+. .-..-.+.+.|.||++||..||.|.+.
T Consensus 12 ~e~q~~EleaL~SIY~d~~~~-~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 12 SQRQDHELQALEAIYGSDFQD-LRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp HHHHHHHHHHHHHHTSSSEEE-CCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred HHHHHHHHHHHHHHCccccee-ccCcccCccCCCcEEEEEEecCCcCCcccceEEEEEEECCCCCCCCCCcEEEe
Confidence 345678999998777666554 22211 13456666654321 101246899999999999999999874
No 60
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=94.34 E-value=0.36 Score=36.59 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhCCCCCeEEEecCC--CCceeEEEEEcCCCc-cc--CCCEEEEEEEcCCCCCCCCCeEEEec
Q psy4609 92 LLIKEVQEMEQNLPNTCKTKFTNP--NHLHEFTIVISPDEG-YW--RGGKFLFSVSVPEEYNMAPPKVKCLT 158 (242)
Q Consensus 92 RL~~E~~~l~~~~~~gi~v~~~~~--~~l~~w~~~igp~~t-py--egg~f~~~i~fp~~YP~~pP~V~f~t 158 (242)
....|+..|+.-.+..+.+. ... .....+.+.+.+..+ .- ..-.+.+.|.+|++||..+|.|...+
T Consensus 12 ~~~~EleaL~SIY~de~~~~-~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 12 VLPSEVEVLESIYLDELQVI-KGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp HHHHHHHHHHHHSTTTEEEE-CCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEe-cCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence 36789999988777666652 221 234455666644322 11 12478899999999999999998765
No 61
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=90.42 E-value=5.3 Score=31.26 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.8
Q ss_pred EEEEEEEcCCCCCCCCCeEEEec
Q psy4609 136 KFLFSVSVPEEYNMAPPKVKCLT 158 (242)
Q Consensus 136 ~f~~~i~fp~~YP~~pP~V~f~t 158 (242)
.+.+.|.+|++||..+|.|...+
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 79999999999999999998654
No 62
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=87.41 E-value=1.3 Score=36.34 Aligned_cols=84 Identities=13% Similarity=0.241 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhCCCCCeEEEecCCCCceeEEEEEcCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecccccccccCCCcE
Q psy4609 92 LLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDI 171 (242)
Q Consensus 92 RL~~E~~~l~~~~~~gi~v~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnV~~~G~i 171 (242)
+|.+|+.+|-=+. -+. .+ ..+....+.+... .|-...++|.++.+||.+||.+...-|+ |.
T Consensus 5 ~li~Ei~~iGW~~----l~~-id-~~~~~i~l~~~D~----~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~------- 65 (186)
T 3zqs_A 5 SLIEEIGTLGWDK----LVY-AD-TCFSTIKLKAEDA----SGREHLITLKLKAKYPAESPDYFVDFPV--PF------- 65 (186)
T ss_dssp SHHHHHHHHCGGG----EEE-EC-TTSSEEEEEEECT----TSCEEEEEEECCTTTTTSCCEEECCCSS--CC-------
T ss_pred HHHHHHHHhCCce----eee-ec-CCccEEEEEEEeC----CCCeEEEEEEECCCCCCCCCeeEEcCCC--Cc-------
Confidence 4778888873211 111 12 4566677776432 3567889999999999999988765443 11
Q ss_pred EeeCCCCCCCCCCCCCCcCCHHHHHHHHHHHhcc
Q psy4609 172 CLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTD 205 (242)
Q Consensus 172 Cl~~L~~~~~~~~~W~p~~~l~~vl~~I~~ll~~ 205 (242)
.. .|+|..+|.+++...+.++..
T Consensus 66 -----~~------~w~~~ssL~~v~~qF~~~Le~ 88 (186)
T 3zqs_A 66 -----CA------SWTPQSSLISIYSQFLAAIES 88 (186)
T ss_dssp -----CC------CCCTTCCHHHHHHHHHHHHHH
T ss_pred -----cc------ccCCCccHHHHHHHHHHHHHH
Confidence 11 799999999999988888776
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=84.70 E-value=0.87 Score=35.67 Aligned_cols=23 Identities=17% Similarity=0.389 Sum_probs=20.5
Q ss_pred EEEEEEEcCCCCCCCCCeEEEec
Q psy4609 136 KFLFSVSVPEEYNMAPPKVKCLT 158 (242)
Q Consensus 136 ~f~~~i~fp~~YP~~pP~V~f~t 158 (242)
.+.+.|.+|++||..||.|....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~ 96 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRS 96 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEEC
T ss_pred eEEEEEECCCCCCCCCCeEEEEc
Confidence 58899999999999999998764
No 64
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=37.74 E-value=6.9 Score=29.21 Aligned_cols=29 Identities=10% Similarity=-0.081 Sum_probs=0.0
Q ss_pred CCCCcccHHHHHHHHHCHHHHHHHHHHHH
Q psy4609 208 NFDDPLNIEAAEMYQKNKELFRERARCLE 236 (242)
Q Consensus 208 ~~~dP~N~eAa~~~~~d~~~f~~~vr~~~ 236 (242)
....|.+.+.|++|.+++..|...+|-|+
T Consensus 22 ~~~~PQDA~VA~qy~~~~~~f~~TAr~WT 50 (108)
T 2cwb_A 22 TTTEAVDAATAEKVFKQYANDNGVDGEWT 50 (108)
T ss_dssp -----------------------------
T ss_pred ccCCchhHHHHHHHHhchhcccccccccc
Confidence 45669999999999999999999999998
No 65
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=27.87 E-value=38 Score=18.09 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhCCCCCe
Q psy4609 89 RDKLLIKEVQEMEQNLPNTC 108 (242)
Q Consensus 89 ~~~RL~~E~~~l~~~~~~gi 108 (242)
-..||.-|+..++.++|.|.
T Consensus 6 eldrlllelnavqhnppsg~ 25 (26)
T 3u3c_B 6 ELDRLLLELNAVQHNPPSGX 25 (26)
T ss_pred HHHHHHHHHhhhccCCCCCC
Confidence 45688899999999988774
No 66
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=22.60 E-value=1.7e+02 Score=23.38 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=29.0
Q ss_pred CCceeEEEEE-cCCCcccCCCEEEEEEEcCCCCCCCCCeEEEecc
Q psy4609 116 NHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTK 159 (242)
Q Consensus 116 ~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~V~f~t~ 159 (242)
+.-+.|.+.+ ++.+.-...-+=++.+.+.+.||. |...+..+
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~P 72 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAP 72 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSS
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCC
Confidence 5678999999 554433334466788889999985 66666554
No 67
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=21.79 E-value=71 Score=26.28 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=21.7
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeEEEe
Q psy4609 133 RGGKFLFSVSVPEEYNM-----APPKVKCL 157 (242)
Q Consensus 133 egg~f~~~i~fp~~YP~-----~pP~V~f~ 157 (242)
+.|.|.|.-.+|--||. .||.|.|.
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~ 138 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLI 138 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEE
Confidence 45899999999999998 78988875
Done!