RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4609
(242 letters)
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 204 bits (522), Expect = 1e-67
Identities = 103/153 (67%), Positives = 124/153 (81%)
Query: 81 SSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFS 140
S +R+ +RDKLL+KEV E+E NLP TCK F +PN LH F + ++PDEGY++GGKF F
Sbjct: 7 DSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFE 66
Query: 141 VSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLN 200
VP+ YNM PPKVKCLTK+WHPNI E G+ICLSLLR++SIDG GWAPTR LKDV+WGLN
Sbjct: 67 TEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLN 126
Query: 201 SLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
SLFTDLLNFDDPLNIEAAE + ++KE FR +
Sbjct: 127 SLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVD 159
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 179 bits (456), Expect = 3e-57
Identities = 66/173 (38%), Positives = 102/173 (58%), Gaps = 13/173 (7%)
Query: 61 MITLSKKLKMQNEGCDIVDKSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHE 120
MI L + + E +K S+K+ + K++ E+ NLP TC F++P+ L
Sbjct: 3 MIKLFSLKQQKKE----EEKGSSKKASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLN 56
Query: 121 FTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNS 180
F +VI PDEG+++ GKF+FS V + Y PPKVKC T ++HPNI+ G++ L++LR++
Sbjct: 57 FKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILRED- 115
Query: 181 IDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
W P + +I+GL LF + N +DPLN EAAE+ Q N+ LF + +
Sbjct: 116 -----WKPVLTINSIIYGLQYLFLE-PNPEDPLNKEAAEVLQNNRRLFEQNVQ 162
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 170 bits (432), Expect = 5e-54
Identities = 60/143 (41%), Positives = 91/143 (63%), Gaps = 9/143 (6%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
+ K++ E+ NLP TC F++P+ L F +VI PDEG+++ GKF+FS V + Y
Sbjct: 9 LRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHD 66
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKVKC T ++HPNI+ G++CL++LR++ W P + +I+GL LF + N +
Sbjct: 67 PPKVKCETMVYHPNIDLEGNVCLNILRED------WKPVLTINSIIYGLQYLFLE-PNPE 119
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPLN EAAE+ Q N+ LF + +
Sbjct: 120 DPLNKEAAEVLQNNRRLFEQNVQ 142
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 167 bits (425), Expect = 1e-52
Identities = 49/177 (27%), Positives = 90/177 (50%), Gaps = 12/177 (6%)
Query: 61 MITLSKKLKMQNEGCDIVDKSSNKRIFIRDKLLIKEVQEMEQNLPNTCK----TKFTNPN 116
M+ L + K + + + S + L +++ ++ T + +
Sbjct: 3 MLKLRQLQKKKQKENE-NSSSIQPNLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRS 61
Query: 117 HLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLL 176
+ +++ PDEGY+ G F++ E Y + PPKV CL K++HPNI+ G++CL++L
Sbjct: 62 QSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNIL 121
Query: 177 RQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
R++ W+P L+ +I GL LF + N +DPLN +AA++ + ++ F E R
Sbjct: 122 RED------WSPALDLQSIITGLLFLFLE-PNPNDPLNKDAAKLLCEGEKEFAEAVR 171
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 142 bits (361), Expect = 3e-43
Identities = 41/143 (28%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
++KE++++++ P + ++ ++ + ++ PD+ + F +S P EY
Sbjct: 7 MRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFK 66
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PP +K TK++HPN++ENG ICL ++ + W P K V+ LN L N
Sbjct: 67 PPMIKFTTKIYHPNVDENGQICLPIISSEN-----WKPCTKTCQVLEALNVLVNR-PNIR 120
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
+PL ++ A++ +N ELFR+ A
Sbjct: 121 EPLRMDLADLLTQNPELFRKNAE 143
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 133 bits (336), Expect = 2e-39
Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
+ L+KE++E+ + + + +L + +I PD + G F ++ P EY
Sbjct: 5 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFK 64
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPK+ TK++HPNI+E G +CL ++ W P K VI L +L D +
Sbjct: 65 PPKITFKTKIYHPNIDEKGQVCLPVISAE-----NWKPATKTDQVIQSLIALVND-PQPE 118
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
PL + AE Y K+++ F + A
Sbjct: 119 HPLRADLAEEYSKDRKKFCKNAE 141
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 131 bits (330), Expect = 2e-38
Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 15/163 (9%)
Query: 80 KSSNKRIFIRDKLLIKEVQE----MEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWR- 133
SNKRI KLL++EV P++ + + ++ + + + P + +
Sbjct: 7 NISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGG 66
Query: 134 -GGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKL 192
G + SV ++Y PP V+ +T ++ P + G IC ++ W P +
Sbjct: 67 AGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDF------WTPDQHA 120
Query: 193 KDVIWGLNSLFTDLL--NFDDPLNIEAAEMYQKNKELFRERAR 233
DVI + DD +N EA +K + F R R
Sbjct: 121 SDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR 163
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 123 bits (312), Expect = 5e-36
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 16/155 (10%)
Query: 81 SSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLF 139
S KRI +KE+Q ++ + +F + + +H P + GGKF+
Sbjct: 1 SRAKRI-------MKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVV 53
Query: 140 SVSVPEEYNMAPPKVKCLTKLWHPNIN-ENGDICLSLLRQNSIDGLGWAPTRKLKDVIWG 198
+ VP EY PPK++ TK++HPNI+ G ICL +L+ W+P LK +
Sbjct: 54 DIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNA------WSPVITLKSALIS 107
Query: 199 LNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
L +L +DP + E A+ Y +++E F + A
Sbjct: 108 LQALLQS-PEPNDPQDAEVAQHYLRDRESFNKTAA 141
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 121 bits (306), Expect = 5e-35
Identities = 37/151 (24%), Positives = 81/151 (53%), Gaps = 9/151 (5%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNM 149
K L+ E +++ N P N + E+ +I P++ + G F +S P +Y +
Sbjct: 6 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 65
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLG-------WAPTRKLKDVIWGLNSL 202
+PPK++ +++HPNI +G +C+S+L D +G W+P + ++ ++ + S+
Sbjct: 66 SPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSM 125
Query: 203 FTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
+ N + N++A++M++ ++E F + A+
Sbjct: 126 LAE-PNDESGANVDASKMWRDDREQFYKIAK 155
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 120 bits (304), Expect = 9e-35
Identities = 41/144 (28%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNM 149
+L+ KEV + + P+ K F N L + + I P+ + GG F + + +++
Sbjct: 16 RLVYKEVTTLTADPPDGIKV-FPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPA 74
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNF 209
+PPK LTK++HPN+ NG+IC+++L+++ W ++ V+ + L N
Sbjct: 75 SPPKGYFLTKIFHPNVGANGEICVNVLKRD------WTAELGIRHVLLTIKCLLIH-PNP 127
Query: 210 DDPLNIEAAEMYQKNKELFRERAR 233
+ LN EA + +N E + RAR
Sbjct: 128 ESALNEEAGRLLLENYEEYAARAR 151
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 122 bits (308), Expect = 9e-35
Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 16/155 (10%)
Query: 81 SSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLF 139
S KRI +KE+Q ++ + +F + + +H P + GGKF+
Sbjct: 2 SRAKRI-------MKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVV 54
Query: 140 SVSVPEEYNMAPPKVKCLTKLWHPNINE-NGDICLSLLRQNSIDGLGWAPTRKLKDVIWG 198
+ VP EY PPK++ TK++HPNI+ G ICL +LR W+P LK +
Sbjct: 55 DIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNA------WSPVITLKSALIS 108
Query: 199 LNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
L +L +DP + E A+ Y +++E F + A
Sbjct: 109 LQALLQS-PEPNDPQDAEVAQHYLRDRESFNKTAA 142
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 120 bits (304), Expect = 1e-34
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 5/146 (3%)
Query: 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEY 147
R L +E+ + P + + I + G F V +PE Y
Sbjct: 5 RASRLKRELHMLATEPPPGITCWQDKDQ-MDDLRAQILGGANTPYEKGVFKLEVIIPERY 63
Query: 148 NMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLL 207
PP+++ LT ++HPNI+ G ICL +L+ W P+ + V+ + L ++
Sbjct: 64 PFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKG--AWRPSLNIATVLTSIQLLMSE-P 120
Query: 208 NFDDPLNIEAAEMYQKNKELFRERAR 233
N DDPL + + ++ NK F + AR
Sbjct: 121 NPDDPLMADISSEFKYNKPAFLKNAR 146
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 121 bits (305), Expect = 2e-34
Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 16/154 (10%)
Query: 81 SSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLF 139
+S KRI KE+ ++ + P C N ++E+ I P + GG F
Sbjct: 48 TSAKRI-------QKELADITLDPPPNCSAGPKGDN-IYEWRSTILGPPGSVYEGGVFFL 99
Query: 140 SVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGL 199
++ EY PPKV T+++H NIN G ICL +L+ N W+P + V+ +
Sbjct: 100 DITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN------WSPALTISKVLLSI 153
Query: 200 NSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
SL TD N DPL A Y N+ AR
Sbjct: 154 CSLLTD-CNPADPLVGSIATQYMTNRAEHDRMAR 186
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 120 bits (302), Expect = 2e-34
Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 16/154 (10%)
Query: 81 SSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLF 139
S KRI IKE +++ + + ++L F + I P++ + G F
Sbjct: 5 SLPKRI-------IKETEKLVSDPVPGITA-EPHDDNLRYFQVTIEGPEQSPYEDGIFEL 56
Query: 140 SVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGL 199
+ +P++Y M PKV+ LTK++HPNI+ G ICL +L+ N W+P +++ V+ +
Sbjct: 57 ELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTN------WSPALQIRTVLLSI 110
Query: 200 NSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
+L N +DPL + AE + KN++ + +AR
Sbjct: 111 QALLAS-PNPNDPLANDVAEDWIKNEQGAKAKAR 143
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 119 bits (301), Expect = 3e-34
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 16/154 (10%)
Query: 81 SSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLF 139
+RI IKE Q + K + ++ F +VI+ P + + GG F
Sbjct: 5 GLPRRI-------IKETQRLLAEPVPGIKA-EPDESNARYFHVVIAGPQDSPFEGGTFKL 56
Query: 140 SVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGL 199
+ +PEEY MA PKV+ +TK++HPN+++ G ICL +L+ W+P +++ V+ +
Sbjct: 57 ELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK------WSPALQIRTVLLSI 110
Query: 200 NSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
+L + N DDPL + AE ++ N+ E AR
Sbjct: 111 QALLSA-PNPDDPLANDVAEQWKTNEAQAIETAR 143
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 119 bits (300), Expect = 5e-34
Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 16/155 (10%)
Query: 80 KSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFL 138
+ + KRI KE+ ++ ++ P C + + + I P++ + GG F
Sbjct: 20 QGALKRI-------NKELNDLSKDPPTNCSAGPVGDD-MFHWQATIMGPEDSPYSGGVFF 71
Query: 139 FSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWG 198
++ P +Y PPKV TK++HPNIN G ICL +L+ W+P + V+
Sbjct: 72 LNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQ------WSPALTISKVLLS 125
Query: 199 LNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
++SL TD N DDPL E A +Y+ ++ + + AR
Sbjct: 126 ISSLLTD-PNPDDPLVPEIAHLYKSDRMRYDQTAR 159
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 118 bits (298), Expect = 6e-34
Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNM 149
K + KE+Q++ ++ P C + L + I P E ++GG F ++ P +Y
Sbjct: 7 KRIQKELQDLGRDPPAQCSAGPVGDD-LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPF 65
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNF 209
PPKV T+++HPNIN NG ICL +LR W+P + V+ + SL D N
Sbjct: 66 KPPKVAFTTRIYHPNINSNGSICLDILRSQ------WSPALTISKVLLSICSLLCD-PNP 118
Query: 210 DDPLNIEAAEMYQKNKELFRERAR 233
DDPL E A +Y+ ++E + + AR
Sbjct: 119 DDPLVPEIARIYKTDRERYNQLAR 142
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 118 bits (298), Expect = 7e-34
Identities = 45/142 (31%), Positives = 76/142 (53%), Gaps = 9/142 (6%)
Query: 93 LIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNMAP 151
+ KE Q + P P + F I+I+ PD + GG + + +PE+Y M P
Sbjct: 6 ITKETQNLANEPPPGIMA-VPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEP 64
Query: 152 PKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDD 211
PKV+ LTK++HPNI++ G ICL +L+ W+P +++ V+ + +L + DD
Sbjct: 65 PKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLSS-PEPDD 117
Query: 212 PLNIEAAEMYQKNKELFRERAR 233
PL+ + AE ++++K AR
Sbjct: 118 PLDSKVAEHFKQDKNDAEHVAR 139
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 119 bits (299), Expect = 7e-34
Identities = 44/154 (28%), Positives = 87/154 (56%), Gaps = 11/154 (7%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNM 149
LL +++ E+ +N + N L+ + ++I P + + GG F ++ P++Y +
Sbjct: 20 LLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPL 79
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLG-------WAPTRKLKDVIWGLNSL 202
PPK+K +T++WHPN+++NGD+C+S+L + D G W P ++ ++ + S+
Sbjct: 80 RPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISM 139
Query: 203 FTDLLNFDDPLNIEAAEMYQKNKELFRER--ARC 234
D N D P N++AA+ +++++ +R ARC
Sbjct: 140 LAD-PNGDSPANVDAAKEWREDRNGEFKRKVARC 172
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 118 bits (297), Expect = 1e-33
Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 9/142 (6%)
Query: 93 LIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNMAP 151
+ KE+ ++ ++ P C + + + I P++ ++GG F ++ P +Y P
Sbjct: 24 IHKELNDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 82
Query: 152 PKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDD 211
PKV T+++HPNIN NG ICL +LR W+P + V+ + SL D N DD
Sbjct: 83 PKVAFTTRIYHPNINSNGSICLDILRSQ------WSPALTISKVLLSICSLLCD-PNPDD 135
Query: 212 PLNIEAAEMYQKNKELFRERAR 233
PL E A +Y+ ++E + AR
Sbjct: 136 PLVPEIARIYKTDREKYNRIAR 157
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 117 bits (295), Expect = 2e-33
Identities = 35/151 (23%), Positives = 77/151 (50%), Gaps = 9/151 (5%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNM 149
K L+KE+Q++ ++ P + N++ + +I P + + G F + P++Y +
Sbjct: 7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 66
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLG-------WAPTRKLKDVIWGLNSL 202
+PPK+ + HPNI NG++C+S+L D W+P + ++ ++ + S+
Sbjct: 67 SPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSM 126
Query: 203 FTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
++ N + NI+A +++ N+ F + +
Sbjct: 127 LSE-PNIESGANIDACILWRDNRPEFERQVK 156
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 116 bits (292), Expect = 6e-33
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 10/148 (6%)
Query: 91 KLLIKEVQEMEQNLPNTC----KTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPE 145
+ L +E ++ ++ P K L ++ I + W GG + +V P
Sbjct: 7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66
Query: 146 EYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTD 205
EY PPKVK +HPN+ +G ICLS+L + W P LK ++ G+ L
Sbjct: 67 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILN----EDQDWRPAITLKQIVLGVQDLLDS 122
Query: 206 LLNFDDPLNIEAAEMYQKNKELFRERAR 233
N + P A + +NK + ++
Sbjct: 123 -PNPNSPAQEPAWRSFSRNKAEYDKKVL 149
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 115 bits (291), Expect = 1e-32
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 10/148 (6%)
Query: 91 KLLIKEVQEMEQNLPNTC----KTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPE 145
L +E + ++ P +L + I W GG F + +
Sbjct: 10 SRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKD 69
Query: 146 EYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTD 205
+Y +PPK K L+HPN+ +G +CLS+L + W P +K ++ G+ L +
Sbjct: 70 DYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE----EDKDWRPAITIKQILLGIQELLNE 125
Query: 206 LLNFDDPLNIEAAEMYQKNKELFRERAR 233
N P EA +Y +N+ + +R R
Sbjct: 126 -PNIQSPAQAEAYTIYCQNRVEYEKRVR 152
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 115 bits (290), Expect = 1e-32
Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNM 149
K L+++ + ++Q+ P + N++ + VI PD+ W GG F S+ E+Y
Sbjct: 7 KRLMRDFKRLQQDPPAGI-SGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPN 65
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNF 209
PP V+ +++++HPNI +G ICL +L+ W+P + ++ + SL D N
Sbjct: 66 KPPTVRFVSRMFHPNIYADGSICLDILQNQ------WSPIYDVAAILTSIQSLLCD-PNP 118
Query: 210 DDPLNIEAAEMYQKNKELFRERAR 233
+ P N EAA MY ++K + R R
Sbjct: 119 NSPANSEAARMYSESKREYNRRVR 142
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 115 bits (290), Expect = 2e-32
Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 9/148 (6%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNM 149
K L+ E++ +++ + + L+ + + I P Y+ GG F + P +Y
Sbjct: 10 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 69
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLG-------WAPTRKLKDVIWGLNSL 202
+PP + LTK+WHPNI E GD+C+S+L D W PT+ ++ ++ + SL
Sbjct: 70 SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISL 129
Query: 203 FTDLLNFDDPLNIEAAEMYQKNKELFRE 230
+ N P N++A+ MY+K KE +
Sbjct: 130 LNE-PNTFSPANVDASVMYRKWKESKGK 156
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 113 bits (286), Expect = 4e-32
Identities = 37/144 (25%), Positives = 75/144 (52%), Gaps = 10/144 (6%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNM 149
K L +E++ + + T F + ++L ++ + P + + K+ ++ P +Y
Sbjct: 12 KRLQQELRTLLMSGDPGI-TAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPY 70
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNF 209
PP VK T WHPN++++G+ICL +L++N W + ++ ++ L SL + N
Sbjct: 71 KPPVVKFTTPCWHPNVDQSGNICLDILKEN------WTASYDVRTILLSLQSLLGE-PNN 123
Query: 210 DDPLNIEAAEMYQKNKELFRERAR 233
PLN +AA+M+ N+ +++
Sbjct: 124 ASPLNAQAADMW-SNQTEYKKVLH 146
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 114 bits (287), Expect = 5e-32
Identities = 40/144 (27%), Positives = 77/144 (53%), Gaps = 9/144 (6%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNM 149
+ L+++ + M+++ P + P+++ + +I P + + G F + EEY
Sbjct: 7 RRLMRDFKRMKEDAPPGV-SASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPN 65
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNF 209
PP VK L++++HPN+ NG+ICL +L+ W PT + ++ + SLF D N
Sbjct: 66 KPPHVKFLSEMFHPNVYANGEICLDILQNR------WTPTYDVASILTSIQSLFND-PNP 118
Query: 210 DDPLNIEAAEMYQKNKELFRERAR 233
P N+EAA +++ +K + +R +
Sbjct: 119 ASPANVEAATLFKDHKSQYVKRVK 142
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 113 bits (284), Expect = 9e-32
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
Query: 91 KLLIKEVQEMEQNLPNTC----KTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPE 145
L +E ++ ++ P L + + I + W GG + +++ PE
Sbjct: 13 TRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPE 72
Query: 146 EYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTD 205
EY PPK + L+HPN+ +G +CLS+L + GW P +K ++ G+ L D
Sbjct: 73 EYPTRPPKCRFTPPLFHPNVYPSGTVCLSILN----EEEGWKPAITIKQILLGIQDLLDD 128
Query: 206 LLNFDDPLNIEAAEMYQKNKELFRERAR 233
N P EA M++K+K + +R R
Sbjct: 129 -PNIASPAQTEAYTMFKKDKVEYEKRVR 155
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 112 bits (283), Expect = 1e-31
Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 11/144 (7%)
Query: 93 LIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNMAP 151
L ++ + + + + N + +F ++ P+ + GG + V++P++Y A
Sbjct: 4 LTRKQCDFTKLIMAGYDLELNNGS-TQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFAS 62
Query: 152 PKVKCLTKLWHPNINE-NGDICLSLLRQNSIDGLGWAPTRKLKDV-IWGLNSLFTDLLNF 209
P + + KL HPN++E +G +CL ++ Q W P L +V L L T N
Sbjct: 63 PSIGFMNKLLHPNVDEASGSVCLDVINQT------WTPLYSLVNVFEVFLPQLLTY-PNP 115
Query: 210 DDPLNIEAAEMYQKNKELFRERAR 233
DPLN +AA + K+K ++ E+ +
Sbjct: 116 SDPLNSDAASLLMKDKNIYEEKVK 139
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 113 bits (285), Expect = 1e-31
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNM 149
K L +E+ + + F ++L ++ I + ++ S+ P Y
Sbjct: 33 KRLQQELMTLMMSGDKGISA-FPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY 91
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNF 209
P VK LT +HPN++ G+I L +L++ W+ ++ ++ + SL + N
Sbjct: 92 NAPTVKFLTPCYHPNVDTQGNISLDILKEK------WSALYDVRTILLSIQSLLGE-PNI 144
Query: 210 DDPLNIEAAEMYQKNKELFRERAR 233
D PLN AAE++ KN F++ +
Sbjct: 145 DSPLNTHAAELW-KNPTAFKKYLQ 167
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 112 bits (282), Expect = 2e-31
Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 18/157 (11%)
Query: 81 SSNKRIFIRDKLLIKEVQEMEQNLPNTCK--TKFTNPNHLHEFTIVIS-PDEGYWRGGKF 137
+ +RI +E +E+ ++ + + E I+ P + + GG++
Sbjct: 8 IAVQRI-------KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRY 60
Query: 138 LFSVSVPEEYNMAPPKVKCLTKLWHPNINE-NGDICLSLLRQNSIDGLGWAPTRKLKDVI 196
+ +PE Y PPKV+ +TK+WHPNI+ G ICL +L+ WA L+ V+
Sbjct: 61 QLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ------WAAAMTLRTVL 114
Query: 197 WGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
L +L DDP + A Y++N E+F++ AR
Sbjct: 115 LSLQALLAA-AEPDDPQDAVVANQYKQNPEMFKQTAR 150
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 113 bits (285), Expect = 3e-31
Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 10/147 (6%)
Query: 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEY 147
L KE++++E ++ E+ I P+ + GG F ++++P +Y
Sbjct: 24 ELLRLQKELKDIENENVQEIDA-HIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDY 82
Query: 148 NMAPPKVKCLTKLWHPNINEN-GDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDL 206
PPK+K +TK+WHPNI+ G ICL +L+ W+P ++ + + +L +D
Sbjct: 83 PYNPPKIKFVTKIWHPNISSQTGAICLDVLKNE------WSPALTIRTALLSIQALLSD- 135
Query: 207 LNFDDPLNIEAAEMYQKNKELFRERAR 233
DDP + E A+MY++N LF + A
Sbjct: 136 PQPDDPQDAEVAKMYKENHALFVKTAS 162
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 112 bits (281), Expect = 4e-31
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 8/145 (5%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNM 149
LL ++ ++++N T + E+ + I W+G F ++ EYN
Sbjct: 26 LLLHRDFCDLKENNYKGI-TAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNY 84
Query: 150 APPKVKCLTKLWHPNINEN-GDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLN 208
APP VK +T +HPN++ + G C+ L W L ++ L + ++
Sbjct: 85 APPVVKFITIPFHPNVDPHTGQPCIDFLDNPE----KWNTNYTLSSILLALQVMLSN-PV 139
Query: 209 FDDPLNIEAAEMYQKNKELFRERAR 233
++P+N+EAA + K++ L+R R
Sbjct: 140 LENPVNLEAARILVKDESLYRTILR 164
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 110 bits (277), Expect = 1e-30
Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 26/158 (16%)
Query: 81 SSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLF 139
+R+ +V ++ ++ L+EF + P + GG +
Sbjct: 25 PGKRRM-------DTDVIKLIESKHEVTIL-----GGLNEFVVKFYGPQGTPYEGGVWKV 72
Query: 140 SVSVPEEYNMAPPKVKCLTKLWHPNINE-NGDICLSLLRQNSIDGLGWAPTRKLKDVIWG 198
V +P++Y P + + K++HPNI+E +G +CL ++ Q W L ++
Sbjct: 73 RVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQT------WTALYDLTNI--- 123
Query: 199 LNSLFTDLL---NFDDPLNIEAAEMYQKNKELFRERAR 233
S LL N DPLN +AA MY E ++++ +
Sbjct: 124 FESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIK 161
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 112 bits (282), Expect = 2e-30
Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 11/147 (7%)
Query: 91 KLLIKEVQEMEQNLPNTCK--TKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEY 147
+ + +E +E+ ++ + + E I+ P + + GG++ + +PE Y
Sbjct: 60 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 119
Query: 148 NMAPPKVKCLTKLWHPNINE-NGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDL 206
PPKV+ +TK+WHPNI+ G ICL +L+ WA L+ V+ L +L
Sbjct: 120 PFNPPKVRFITKIWHPNISSVTGAICLDILKDQ------WAAAMTLRTVLLSLQALLAA- 172
Query: 207 LNFDDPLNIEAAEMYQKNKELFRERAR 233
DDP + A Y++N E+F++ AR
Sbjct: 173 AEPDDPQDAVVANQYKQNPEMFKQTAR 199
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 110 bits (278), Expect = 2e-30
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 14/155 (9%)
Query: 81 SSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLF 139
+ +RI K KEV + E+ N K + N E I+ P + + GG++
Sbjct: 5 IAVQRI----KREFKEVLKSEETSKNQIKVDLVDEN-FTELRGEIAGPPDTPYEGGRYQL 59
Query: 140 SVSVPEEYNMAPPKVKCLTKLWHPNINE-NGDICLSLLRQNSIDGLGWAPTRKLKDVIWG 198
+ +PE Y PPKV+ +TK+WHPNI+ G ICL +L+ WA L+ V+
Sbjct: 60 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ------WAAAMTLRTVLLS 113
Query: 199 LNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
L +L DDP + A Y++N E+F++ AR
Sbjct: 114 LQALLAA-AEPDDPQDAVVANQYKQNPEMFKQTAR 147
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 110 bits (276), Expect = 3e-30
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 16/161 (9%)
Query: 81 SSNKRI------FIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWR 133
R+ + + + + +H + I+ P +
Sbjct: 32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSA-QIVGGDIHRWRGFIAGPLGTPYE 90
Query: 134 GGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINEN-GDICLSLLRQNSIDGLGWAPTRKL 192
GG F + +P +Y PPK+K +TK+WHPNI+ G ICL +L+ W+P +
Sbjct: 91 GGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHE------WSPALTI 144
Query: 193 KDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
+ + + ++ D DP + E A+M +N LF + A+
Sbjct: 145 RTALLSIQAMLAD-PVPTDPQDAEVAKMMIENHPLFVQTAK 184
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 106 bits (266), Expect = 5e-29
Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 16/144 (11%)
Query: 95 KEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNMAPPK 153
+ + + +T K + + + EF + P+ + G ++ V +P +Y P
Sbjct: 16 RREMDYMRLCNSTRKV-YPSDT-VAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPS 73
Query: 154 VKCLTKLWHPNINE-NGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLL---NF 209
+ ++ HPN++E +G +CL ++ Q W P +L+++ + LL N
Sbjct: 74 IGFCNRILHPNVDERSGSVCLDVINQT------WTPMYQLENI---FDVFLPQLLRYPNP 124
Query: 210 DDPLNIEAAEMYQKNKELFRERAR 233
DPLN++AA + ++ F R
Sbjct: 125 SDPLNVQAAHLLHADRVGFDALLR 148
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 106 bits (267), Expect = 3e-27
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 93 LIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNMAP 151
+ KE+ ++ ++ P C + + + I P++ ++GG F ++ P +Y P
Sbjct: 8 IHKELNDLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 152 PKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDD 211
PKV T+++HPNIN NG I L +LR W+P + V+ + SL D N DD
Sbjct: 67 PKVAFTTRIYHPNINSNGSISLDILRSQ------WSPALTISKVLLSICSLLCD-PNPDD 119
Query: 212 PLNIEAAEMYQKNKELFRERARCLEF 237
PL E A +Y+ ++E + AR
Sbjct: 120 PLVPEIARIYKTDREKYNRIAREWTQ 145
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 101 bits (253), Expect = 5e-27
Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 21/158 (13%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNP-----------NHLHEFTIVIS-PDEGYWRGGKFL 138
++KE + + + L + L ++ +IS P + + +F
Sbjct: 9 SRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFR 68
Query: 139 FSVSVPEEYNMAPPKVK-CLTKLWHPNIN-ENGDICLSLLRQNSIDGLGWAPTRKLKDVI 196
+ VP Y M PPK+ + H N+ G+ICL++L+ W P L +
Sbjct: 69 ILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEE-----WTPVWDLLHCV 123
Query: 197 WGLNSLFTDLLNFDDPLNIEAAEMYQKN-KELFRERAR 233
+ L + D PL+++ + + ++ +
Sbjct: 124 HAVWRLLRE-PVCDSPLDVDIGNIIRCGDMSAYQGIVK 160
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 90.0 bits (224), Expect = 5e-23
Identities = 19/138 (13%), Positives = 46/138 (33%), Gaps = 11/138 (7%)
Query: 89 RDKLLIKEVQEMEQNLPNTCKTKFT---NPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVP 144
R+ L++E+++ E+ + + + ++ I P + S+
Sbjct: 7 RNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCG 66
Query: 145 EEYNMAPPKVKCLTKLWHPNIN-ENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLF 203
Y +PPKV ++K+ P +N G++ W ++ ++ L
Sbjct: 67 PNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRD-----WKRAYTMETLLLDLRKEM 121
Query: 204 TDLLNFDDPLNIEAAEMY 221
+ E +
Sbjct: 122 AT-PANKKLRQPKEGETF 138
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 86.6 bits (215), Expect = 1e-21
Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 17/144 (11%)
Query: 89 RDKLLIKEVQEMEQNLP-NTCKTKFTNPN--HLHEFTIVIS-PDEGYWRGGKFLFSVSVP 144
R L+ E++ ++ + + L ++ I + + ++
Sbjct: 22 RSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCD 81
Query: 145 EEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGL-GWAPTRKLKDVIWGLNSLF 203
+ Y +PP VK TK+ ++ G + + L L W ++ + L SL
Sbjct: 82 DNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNL-----HILKNWNRNYTIETI---LISLR 133
Query: 204 TDLL---NFDDPLNIEAAEMYQKN 224
++L N P E E+Y N
Sbjct: 134 QEMLSSANKRLPQPNE-GEVYSNN 156
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 86.3 bits (214), Expect = 2e-21
Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 23/162 (14%)
Query: 69 KMQNEGCDIVDKSSNKRIFIRDKLLIKEVQEMEQNLPNTC---KTKFTNPNHLHEFTIVI 125
+ G V N R+ ++E++E ++ + + + L +T +I
Sbjct: 13 GLVPRGSTGVKVPRNFRL-------LEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMI 65
Query: 126 S-PDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDI----CLSLLRQNS 180
P + + + +Y APP V+ +TK+ +N + + +S+L +
Sbjct: 66 IGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK-- 123
Query: 181 IDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQ 222
W + +K V+ L L N + Y
Sbjct: 124 -----WQNSYSIKVVLQELRRLMMSKEN-MKLPQPPEGQCYS 159
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 86.7 bits (215), Expect = 2e-21
Identities = 29/168 (17%), Positives = 62/168 (36%), Gaps = 23/168 (13%)
Query: 63 TLSKKLKMQNEGCDIVDKSSNKRIFIRDKLLIKEVQEMEQNLPNTC---KTKFTNPNHLH 119
+ +L+ + C V N R+ ++E++E ++ + + + L
Sbjct: 17 SDEGRLEPRKFHCKGVKVPRNFRL-------LEELEEGQKGVGDGTVSWGLEDDEDMTLT 69
Query: 120 EFTIVIS-PDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDI----CLS 174
+T +I P + + + +Y APP V+ +TK+ +N + + +S
Sbjct: 70 RWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAIS 129
Query: 175 LLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQ 222
+L + W + +K V+ L L N P + Y
Sbjct: 130 VLAK-------WQNSYSIKVVLQELRRLMMSKENMKLP-QPPEGQCYS 169
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 83.9 bits (208), Expect = 1e-20
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNM 149
+ KE+ +N P C T +P+++ + + + + + + P+ Y +
Sbjct: 23 YRIQKELNNFLKNPPINC-TIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPL 81
Query: 150 APPKVKCLTK-LWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTD 205
PP V L K H ++ NGDICLS+L + + P+ + +I + S+ +
Sbjct: 82 KPPIVYFLQKPPKHTHVYSNGDICLSVLGDD------YNPSLSISGLILSIISMLSS 132
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 83.0 bits (206), Expect = 1e-20
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNM 149
+ KE+ N P C T +PN++ + + + + + + P++Y +
Sbjct: 9 YRIQKELHNFLNNPPINC-TLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPL 67
Query: 150 APPKVKCLTK-LWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTD 205
PP V L K H ++ NGDICLSLL + + P+ + ++ + S+ +
Sbjct: 68 KPPIVYFLQKPPKHTHVYSNGDICLSLLGDD------YNPSLSISGLVLSIISMLSS 118
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 80.1 bits (198), Expect = 2e-19
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 91 KLLIKEVQEMEQNLPNTCKTK-FTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYN 148
K L KE+ ++ + P + N + ++ + + + G KF Y
Sbjct: 25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 84
Query: 149 MAPPKVKCLTKL--WHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFT 204
P+V + HP++ NG ICLS+L ++ W+P ++ V + S+ +
Sbjct: 85 FDSPQVMFTGENIPVHPHVYSNGHICLSILTED------WSPALSVQSVCLSIISMLS 136
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 82.4 bits (203), Expect = 1e-18
Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 14/159 (8%)
Query: 89 RDKLLIKEVQEMEQNLPNTCK---TKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVP 144
R + L +E + +LP + + L ++I+ P + + G F F V P
Sbjct: 77 RARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFP 136
Query: 145 EEYNMAPPKVKCLTKLWH-----PNINENGDICLSLLRQNSIDGLG-WAPTRK-LKDVIW 197
++Y +PP V T H PN+ +G +CLS+L W P V+
Sbjct: 137 QDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLV 196
Query: 198 GLNSL-FTDLLNFDDPL--NIEAAEMYQKNKELFRERAR 233
+ SL F++P ++ + R
Sbjct: 197 SVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIR 235
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 76.5 bits (188), Expect = 2e-17
Identities = 20/160 (12%), Positives = 55/160 (34%), Gaps = 23/160 (14%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNP--NHLHEFTIVIS---PDEGYWRGGK--------- 136
L+KE++++ ++ + L+++ + + PD +
Sbjct: 30 DRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIE 89
Query: 137 -FLFSVSVPEEYNMAPPKVKCLTKLWHPN-INENGDICLSLLRQNSIDGLGWAPTRKLKD 194
L + S + + PP V+ + + + G +C+ LL + GW+ ++
Sbjct: 90 YILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQ-----GWSSAYSIES 144
Query: 195 VIWGLNSLFTDLLNFDDPLNIEAAE-MYQKNKELFRERAR 233
VI +N+ + + ++ + +
Sbjct: 145 VIMQINATLVK-GKARVQFGANKNQYNLARAQQSYNSIVQ 183
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 66.3 bits (162), Expect = 1e-13
Identities = 23/169 (13%), Positives = 56/169 (33%), Gaps = 18/169 (10%)
Query: 69 KMQNEGCDIVDKSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-P 127
M + ++ +R+ ++ ++++ P+++ E+ V+ P
Sbjct: 2 SMSSTSSKRAPTTATQRL-------KQDYLRIKKDPVPYI-CAEPLPSNILEWHYVVRGP 53
Query: 128 DEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWA 187
+ + GG + + P E+ PP + +T + N +CLS+ W
Sbjct: 54 EMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSIT---DFHPDTWN 108
Query: 188 PTRKLKDVIWGLNSLFTDLLNFDDPL---NIEAAEMYQKNKELFRERAR 233
P + ++ GL S + + F + +
Sbjct: 109 PAWSVSTILTGLLSFMVE-KGPTLGSIETSDFTKRQLAVQSLAFNLKDK 156
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.002
Identities = 42/256 (16%), Positives = 83/256 (32%), Gaps = 68/256 (26%)
Query: 36 HHRLDYRPHPSRQIFGYGAALWVF----------NMITLSKKLKMQNEGCDIVDKSSNK- 84
HH +D+ + Y L VF + K + E D + S +
Sbjct: 4 HHHMDF--ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 85 ----RIFIRDKLLIKE---VQE-----MEQN---LPNTCKTKFTNPNHLHEFTIVISPDE 129
R+F LL K+ VQ+ + N L + KT+ P+ + I +
Sbjct: 62 SGTLRLF--WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM--MTRMYIEQRD 117
Query: 130 GYWRGGKFL--FSVSVPEEYNMAPPKVK-CLTKLW-HPNINENGDI-----CL--SLLRQ 178
+ + ++VS + Y K++ L +L N+ +G + + +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYL----KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 179 NSI-----DGLGW---APTRKLKDVIWGLNSLFTDL-LNFDD--------PLNIEAAEMY 221
+ + W + V+ L L + N+ L I + +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-- 231
Query: 222 QKNKELFRER--ARCL 235
+ + L + + CL
Sbjct: 232 AELRRLLKSKPYENCL 247
Score = 37.1 bits (85), Expect = 0.005
Identities = 31/252 (12%), Positives = 71/252 (28%), Gaps = 79/252 (31%)
Query: 1 MFWVGSEEDEEEQ--NLLFSPALMSRRANHPNIHTLVHHRLDYRPHPSRQIFGYGAALWV 58
+ W + + N L +L+ ++ + ++ L+ +
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKVKLE------------ 440
Query: 59 FNMITLSKKLKMQNEGCDIVDKSSNKRIFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHL 118
N L + IVD + + F P
Sbjct: 441 -NEYALHRS---------IVDHYNIPKTF--------------------DSDDLIPP--- 467
Query: 119 HEFTIVISPDEGYWRG--GKFLFSVSVPEEYNMAPP----------KVKCLTKLWHPNIN 166
+ Y+ G L ++ PE + K++ + W N
Sbjct: 468 --------YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW----N 515
Query: 167 ENGDICLSLLRQ-----NSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMY 221
+G I L+ L+Q I R + ++ L + +L+ ++ +
Sbjct: 516 ASGSI-LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY-TDLLRIALM 573
Query: 222 QKNKELFRERAR 233
+++ +F E +
Sbjct: 574 AEDEAIFEEAHK 585
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.018
Identities = 49/297 (16%), Positives = 81/297 (27%), Gaps = 130/297 (43%)
Query: 1 MFWVGSE---------------EDEEEQNLLF-SPALMSRRANHPNIHTLVHHRLDYRPH 44
+F++G ED E N SP L + V+ + P
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP- 361
Query: 45 PSRQIF-------------GYGAALWVFNMITLSKKLKMQNEGCDIVDKSSNKRIFIRDK 91
+Q+ G +L+ N +TL K
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLN-LTLRK------------------------- 395
Query: 92 LLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVP--EEYNM 149
K ++Q+ + F+ E + S R FL V+ P +
Sbjct: 396 --AKAPSGLDQS-----RIPFS------ERKLKFS-----NR---FL-PVASPFHSHL-L 432
Query: 150 APPKVKCLTKLWHPNIN-------------ENG-DICLSLLRQ--NSIDGLGWAPTRKLK 193
P L N++ +G D LR SI + ++
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD-----LRVLSGSI-------SERIV 480
Query: 194 DVI------WGLNSLF--TDLLNFDDPLNIEA-AEMYQKNKELFRERARCLEFGEGI 241
D I W + F T +L+F P + +NK+ G G+
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDF-GPGGASGLGVLTHRNKD-----------GTGV 525
Score = 28.1 bits (62), Expect = 3.8
Identities = 33/243 (13%), Positives = 63/243 (25%), Gaps = 94/243 (38%)
Query: 30 NIHTLVHHRLDYRPHPSRQIFGYGAALWVFNMITLSKKLKM-QN--EGCDIVDKSSNKRI 86
+IH L A L N TL K ++ +N + + +K+
Sbjct: 100 DIHALA------------------AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK- 140
Query: 87 FIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI----SPDEGYWRGGKFLFSVS 142
+ L + V E L + I + Y+
Sbjct: 141 --SNSALFRAVGEGNAQL------------------VAIFGGQGNTDDYF---------- 170
Query: 143 VPEE----YNMAPPKVKCLTKLWHPNINENGDICLSLLRQNS---------IDGLGW--A 187
EE Y V L I + + L+R ++ L W
Sbjct: 171 --EELRDLYQTYHVLVGDL-------IKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 188 PTRKLKD-------VIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRERARCL-EFGE 239
P+ + L + L ++ + A++ R + +
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGV-IQLAHY-----VVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 240 GII 242
G++
Sbjct: 276 GLV 278
>1nnv_A Hypothetical protein HI1450; structure 2 function project, S2F,
structural genomics, unknown function; NMR {Haemophilus
influenzae} SCOP: d.17.7.1
Length = 110
Score = 30.0 bits (67), Expect = 0.23
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 3 WVGSEEDEEEQNLLFSPALMSRRANHPNIHTL 34
WVG +++E + +F+ L+S R H +
Sbjct: 76 WVGLVNEQDEMDDVFAKFLISHREEDREFHVI 107
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin
binding, protein transport; 1.40A {Homo sapiens} PDB:
3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A
1kpq_A 1m4p_A 1m4q_A 1s1q_A
Length = 146
Score = 29.9 bits (67), Expect = 0.45
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 15/79 (18%)
Query: 133 RGGKFLFSVS--VPEEYNMAPPKVKC-LTKLW----HPNINENGDICLSLLRQNSIDGLG 185
RG + + + + Y PP T +++ NG I L L +
Sbjct: 65 RGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHE------- 117
Query: 186 WAPTR-KLKDVIWGLNSLF 203
W + L +I + +F
Sbjct: 118 WKHPQSDLLGLIQVMIVVF 136
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit;
metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J
recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10
PDB: 2i7v_A
Length = 459
Score = 28.3 bits (64), Expect = 2.3
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 209 FDDPLNIEAAEMYQKNKELFRERAR 233
+ L + +YQ ++ R
Sbjct: 270 YASSLAKKCMAVYQTYVNAMNDKIR 294
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG,
RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP:
b.145.1.1
Length = 133
Score = 26.3 bits (57), Expect = 5.7
Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 10/124 (8%)
Query: 61 MITLSKKLKMQNEGCDIVDKSSNKRIFIRDKLLIKEVQEMEQNL-PNTCKTKFTNPNHLH 119
+I L+ + E D + I K+ V+ +E + P +F H
Sbjct: 19 IIQLANGELKKVEDLKTEDFIQSAEISNDLKIDSSTVERIEDSHSPGVAVIQFAVGEHRA 78
Query: 120 EFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQN 179
+ ++ + + ++ G+ S E + C +KL GD+C+SL +N
Sbjct: 79 QVSVEVLVEYPFFVFGQGWSSCC--PERTSQLFDLPC-SKL------SVGDVCISLTLKN 129
Query: 180 SIDG 183
+G
Sbjct: 130 LKNG 133
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.434
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,846,283
Number of extensions: 221296
Number of successful extensions: 624
Number of sequences better than 10.0: 1
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 63
Length of query: 242
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 151
Effective length of database: 4,160,982
Effective search space: 628308282
Effective search space used: 628308282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)