RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4609
(242 letters)
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 114 bits (287), Expect = 1e-32
Identities = 40/151 (26%), Positives = 83/151 (54%), Gaps = 9/151 (5%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNM 149
LL K++ +M + + + N ++++ +++ P + + GG F + P +Y
Sbjct: 3 LLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQ 62
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLG-------WAPTRKLKDVIWGLNSL 202
PPK+K ++++WHPNI++ G++C+S+L D G W P ++ ++ + S+
Sbjct: 63 KPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISM 122
Query: 203 FTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
TD NF+ P N++AA+M ++N F+++
Sbjct: 123 LTD-PNFESPANVDAAKMQRENYAEFKKKVA 152
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 110 bits (276), Expect = 3e-31
Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+Q++ ++ P C + H ++ P E ++GG F ++ P +Y
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++HPNIN NG ICL +LR W+P + V+ + SL D N D
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQ------WSPALTISKVLLSICSLLCD-PNPD 116
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL E A +Y+ ++E + + AR
Sbjct: 117 DPLVPEIARIYKTDRERYNQLAR 139
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 109 bits (273), Expect = 8e-31
Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
+ L+++ + M+++ P N + ++I P + + G F + EEY
Sbjct: 6 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 65
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PP VK L++++HPN+ NG+ICL +L+ W PT + ++ + SLF D N
Sbjct: 66 PPHVKFLSEMFHPNVYANGEICLDILQNR------WTPTYDVASILTSIQSLFND-PNPA 118
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
P N+EAA +++ +K + +R +
Sbjct: 119 SPANVEAATLFKDHKSQYVKRVK 141
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 109 bits (273), Expect = 9e-31
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K + KE+ E+ + P C N + ++ P + GG F ++ +Y
Sbjct: 5 KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFK 64
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKV T+++H NIN G ICL +L+ N W+P + V+ + SL TD N
Sbjct: 65 PPKVTFRTRIYHCNINSQGVICLDILKDN------WSPALTISKVLLSICSLLTD-CNPA 117
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL A Y N+ AR
Sbjct: 118 DPLVGSIATQYMTNRAEHDRMAR 140
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 109 bits (273), Expect = 9e-31
Identities = 39/143 (27%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K +IKE +++ + + + N + + P++ + G F + +P++Y M
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PKV+ LTK++HPNI+ G ICL + W+P +++ V+ + +L N +
Sbjct: 66 APKVRFLTKIYHPNIDRLGRICL------DVLKTNWSPALQIRTVLLSIQALLAS-PNPN 118
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL + AE + KN++ + +AR
Sbjct: 119 DPLANDVAEDWIKNEQGAKAKAR 141
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 108 bits (270), Expect = 2e-30
Identities = 41/143 (28%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
+ L+++ ++++++ P T N L I+ P E + G F S+ EEY
Sbjct: 6 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 65
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PP VK ++K++HPN+ +G ICL +L+ W+PT + ++ + SL + N +
Sbjct: 66 PPTVKFISKMFHPNVYADGSICLDILQNR------WSPTYDVAAILTSIQSLLDE-PNPN 118
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
P N AA++YQ+N+ + +R +
Sbjct: 119 SPANSLAAQLYQENRREYEKRVQ 141
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 106 bits (264), Expect = 2e-29
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 7/146 (4%)
Query: 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEY 147
R K ++KE+Q ++ + +F + + +H P + GGKF+ + VP EY
Sbjct: 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61
Query: 148 NMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLL 207
PPK++ TK++HPNI+ + +N W+P LK + L +L
Sbjct: 62 PFKPPKMQFDTKVYHPNISSVTGAICLDILKN-----AWSPVITLKSALISLQALLQS-P 115
Query: 208 NFDDPLNIEAAEMYQKNKELFRERAR 233
+DP + E A+ Y +++E F + A
Sbjct: 116 EPNDPQDAEVAQHYLRDRESFNKTAA 141
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 106 bits (265), Expect = 2e-29
Identities = 60/143 (41%), Positives = 91/143 (63%), Gaps = 9/143 (6%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
+ K++ E+ NLP TC F++P+ L F +VI PDEG+++ GKF+FS V + Y
Sbjct: 6 LRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHD 63
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPKVKC T ++HPNI+ G++CL++LR++ W P + +I+GL LF + N +
Sbjct: 64 PPKVKCETMVYHPNIDLEGNVCLNILRED------WKPVLTINSIIYGLQYLFLE-PNPE 116
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPLN EAAE+ Q N+ LF + +
Sbjct: 117 DPLNKEAAEVLQNNRRLFEQNVQ 139
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 105 bits (262), Expect = 3e-29
Identities = 44/143 (30%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
+ +IKE Q + K + N + ++ P + + GG F + +PEEY MA
Sbjct: 5 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 64
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PKV+ +TK++HPN+++ G ICL +L+ W+P +++ V+ + +L + N D
Sbjct: 65 APKVRFMTKIYHPNVDKLGRICLDILKDK------WSPALQIRTVLLSIQALLSA-PNPD 117
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
DPL + AE ++ N+ E AR
Sbjct: 118 DPLANDVAEQWKTNEAQAIETAR 140
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 103 bits (258), Expect = 1e-28
Identities = 41/141 (29%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 93 LIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPP 152
++KE++++++ P + ++ ++ + ++ PD+ + F +S P EY PP
Sbjct: 5 VVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPP 64
Query: 153 KVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDP 212
+K TK++HPN++ENG ICL ++ W P K V+ LN L N +P
Sbjct: 65 MIKFTTKIYHPNVDENGQICLPIISSE-----NWKPCTKTCQVLEALNVLVNR-PNIREP 118
Query: 213 LNIEAAEMYQKNKELFRERAR 233
L ++ A++ +N ELFR+ A
Sbjct: 119 LRMDLADLLTQNPELFRKNAE 139
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 103 bits (257), Expect = 2e-28
Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
+ L+KE++E+ + + + +L + +I PD + G F ++ P EY
Sbjct: 2 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFK 61
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PPK+ TK++HPNI+E G +CL ++ W P K VI L +L D +
Sbjct: 62 PPKITFKTKIYHPNIDEKGQVCLPVISAE-----NWKPATKTDQVIQSLIALVND-PQPE 115
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
PL + AE Y K+++ F + A
Sbjct: 116 HPLRADLAEEYSKDRKKFCKNAE 138
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 100 bits (250), Expect = 3e-27
Identities = 34/151 (22%), Positives = 76/151 (50%), Gaps = 9/151 (5%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHE-FTIVISPDEGYWRGGKFLFSVSVPEEYNM 149
K L+KE+Q++ ++ P + N++ ++ P + + G F + P++Y +
Sbjct: 6 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 65
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLG-------WAPTRKLKDVIWGLNSL 202
+PPK+ + HPNI NG++C+S+L D W+P + ++ ++ + S+
Sbjct: 66 SPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSM 125
Query: 203 FTDLLNFDDPLNIEAAEMYQKNKELFRERAR 233
++ N + NI+A +++ N+ F + +
Sbjct: 126 LSE-PNIESGANIDACILWRDNRPEFERQVK 155
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 93.2 bits (231), Expect = 8e-25
Identities = 34/122 (27%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 92 LLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNMA 150
LL +++ E+ +N + N L+ + ++I P + + GG F ++ P++Y +
Sbjct: 3 LLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLR 62
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLG-------WAPTRKLKDVIWGLNSLF 203
PPK+K +T++WHPN+++NGD+C+S+L + D G W P ++ ++ + S+
Sbjct: 63 PPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISML 122
Query: 204 TD 205
D
Sbjct: 123 AD 124
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 93.0 bits (230), Expect = 2e-24
Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 8/141 (5%)
Query: 94 IKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPK 153
KEV + E+ N K + N + P + + GG++ + +PE Y PPK
Sbjct: 13 FKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPK 72
Query: 154 VKCLTKLWHPNIN-ENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDP 212
V+ +TK+WHPNI+ G ICL +L+ WA L+ V+ L +L DDP
Sbjct: 73 VRFITKIWHPNISSVTGAICLDILKDQ------WAAAMTLRTVLLSLQALLAA-AEPDDP 125
Query: 213 LNIEAAEMYQKNKELFRERAR 233
+ A Y++N E+F++ AR
Sbjct: 126 QDAVVANQYKQNPEMFKQTAR 146
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 93.0 bits (230), Expect = 2e-24
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 3/145 (2%)
Query: 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYN 148
R L +E+ + P ++ + G F V +PE Y
Sbjct: 3 RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYP 62
Query: 149 MAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLN 208
PP+++ LT ++HPNI+ G ICL +L+ W P+ + V+ + L ++ N
Sbjct: 63 FEPPQIRFLTPIYHPNIDSAGRICLDVLKLP--PKGAWRPSLNIATVLTSIQLLMSE-PN 119
Query: 209 FDDPLNIEAAEMYQKNKELFRERAR 233
DDPL + + ++ NK F + AR
Sbjct: 120 PDDPLMADISSEFKYNKPAFLKNAR 144
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 89.1 bits (220), Expect = 6e-23
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
Query: 91 KLLIKEVQEMEQNLPNTCKTK----FTNPNHLHEFTIVISPDEG-YWRGGKFLFSVSVPE 145
L +E + ++ P +L + I +G W GG F + +
Sbjct: 5 SRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKD 64
Query: 146 EYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTD 205
+Y +PPK K L+HPN+ +G + LS+L + W P +K ++ G+ L +
Sbjct: 65 DYPSSPPKCKFEPPLFHPNVYPSGTVSLSILE----EDKDWRPAITIKQILLGIQELLNE 120
Query: 206 LLNFDDPLNIEAAEMYQKNKELFRERAR 233
N DP EA +Y +N+ + +R R
Sbjct: 121 -PNIQDPAQAEAYTIYCQNRVEYEKRVR 147
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 86.8 bits (214), Expect = 4e-22
Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
K L +E+ + + + N + + ++ S+ P Y
Sbjct: 4 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 63
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
P VK LT +HPN++ G+I L +L++ W+ ++ ++ + SL + N D
Sbjct: 64 APTVKFLTPCYHPNVDTQGNISLDILKEK------WSALYDVRTILLSIQSLLGEP-NID 116
Query: 211 DPLNIEAAEMYQKNKELFRERAR 233
PLN AAE++ KN F++ +
Sbjct: 117 SPLNTHAAELW-KNPTAFKKYLQ 138
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 86.0 bits (212), Expect = 1e-21
Identities = 37/144 (25%), Positives = 75/144 (52%), Gaps = 10/144 (6%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYNM 149
K L +E++ + + T F + ++L ++ + P + + K+ ++ P +Y
Sbjct: 12 KRLQQELRTLLMSGDPGI-TAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPY 70
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNF 209
PP VK T WHPN++++G+ICL +L++N W + ++ ++ L SL + N
Sbjct: 71 KPPVVKFTTPCWHPNVDQSGNICLDILKEN------WTASYDVRTILLSLQSLLGE-PNN 123
Query: 210 DDPLNIEAAEMYQKNKELFRERAR 233
PLN +AA+M+ N+ +++
Sbjct: 124 ASPLNAQAADMW-SNQTEYKKVLH 146
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 85.5 bits (211), Expect = 1e-21
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 11/144 (7%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNM 149
+ + +V ++ ++ K + T L+EF + P + GG + V +P++Y
Sbjct: 6 RRMDTDVVKLIES-----KHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPF 60
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNF 209
P + + K++HPNI+E + + W L ++ N
Sbjct: 61 KSPSIGFMNKIFHPNIDEASGTVCLDVINQT-----WTALYDLTNIFESFLPQLLAYPNP 115
Query: 210 DDPLNIEAAEMYQKNKELFRERAR 233
DPLN +AA MY E ++++ +
Sbjct: 116 IDPLNGDAAAMYLHRPEEYKQKIK 139
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 86.0 bits (212), Expect = 1e-21
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 8/146 (5%)
Query: 89 RDKLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYN 148
+ + + + + + + P + GG F + +P +Y
Sbjct: 15 QLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYP 74
Query: 149 MAPPKVKCLTKLWHPNIN-ENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLL 207
PPK+K +TK+WHPNI+ + G ICL +L+ W+P ++ + + ++ D
Sbjct: 75 YNPPKMKFVTKIWHPNISSQTGAICLDILKHE------WSPALTIRTALLSIQAMLAD-P 127
Query: 208 NFDDPLNIEAAEMYQKNKELFRERAR 233
DP + E A+M +N LF + A+
Sbjct: 128 VPTDPQDAEVAKMMIENHPLFVQTAK 153
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 85.2 bits (210), Expect = 2e-21
Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGY-WRGGKFLFSVSVPEEYNM 149
+L+ KEV + + P+ K F N L + + I EG + GG F + + +++
Sbjct: 9 RLVYKEVTTLTADPPDGIKV-FPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPA 67
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNF 209
+PPK LTK++HPN+ NG+IC+++L+++ W ++ V+ + L N
Sbjct: 68 SPPKGYFLTKIFHPNVGANGEICVNVLKRD------WTAELGIRHVLLTIKCLLIH-PNP 120
Query: 210 DDPLNIEAAEMYQKNKELFRERAR 233
+ LN EA + +N E + RAR
Sbjct: 121 ESALNEEAGRLLLENYEEYAARAR 144
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 83.6 bits (206), Expect = 5e-21
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNM 149
LL ++ ++++N T + E+ + I W+G F ++ EYN
Sbjct: 7 LLLHRDFCDLKENNYKGI-TAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNY 65
Query: 150 APPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNF 209
APP VK +T +HPN++ + + W L ++ L + ++
Sbjct: 66 APPVVKFITIPFHPNVDPHTGQPC---IDFLDNPEKWNTNYTLSSILLALQVMLSNP-VL 121
Query: 210 DDPLNIEAAEMYQKNKELFRERAR 233
++P+N+EAA + K++ L+R R
Sbjct: 122 ENPVNLEAARILVKDESLYRTILR 145
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 81.6 bits (201), Expect = 3e-20
Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 16/141 (11%)
Query: 89 RDKLLIKEVQEMEQNLPN-TCKTKFTNPN--HLHEFTIVIS-PDEGYWRGGKFLFSVSVP 144
R+ L++E++E ++ + + T + L +T +I P + + +
Sbjct: 6 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG 65
Query: 145 EEYNMAPPKVKCLTKLWHPNINENGDI----CLSLLRQNSIDGLGWAPTRKLKDVIWGLN 200
+Y APP V+ +TK+ +N + + +S+L + W + +K V+ L
Sbjct: 66 PKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK-------WQNSYSIKVVLQELR 118
Query: 201 SLFTDLLNFDDPLNIEAAEMY 221
L N P E Y
Sbjct: 119 RLMMSKENMKLPQPPEGQ-CY 138
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 80.9 bits (199), Expect = 7e-20
Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 7/134 (5%)
Query: 101 EQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTK 159
L N+ + + + + EF + P+ + G ++ V +P +Y P + +
Sbjct: 9 YMRLCNSTRKVYPSDT-VAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNR 67
Query: 160 LWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAE 219
+ HPN++E + W P +L+++ N DPLN++AA
Sbjct: 68 ILHPNVDERSGSVCL-----DVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAH 122
Query: 220 MYQKNKELFRERAR 233
+ ++ F R
Sbjct: 123 LLHADRVGFDALLR 136
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 74.4 bits (182), Expect = 2e-17
Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 5/149 (3%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMA 150
+ L ++ ++++ + N L +V P+ + GG + + P E+
Sbjct: 4 QRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFK 63
Query: 151 PPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTDLLNFD 210
PP + +T N +CLS+ W P + ++ GL S +
Sbjct: 64 PPSIYMITPNGRFKC--NTRLCLSI---TDFHPDTWNPAWSVSTILTGLLSFMVEKGPTL 118
Query: 211 DPLNIEAAEMYQKNKELFRERARCLEFGE 239
+ Q + + F E
Sbjct: 119 GSIETSDFTKRQLAVQSLAFNLKDKVFCE 147
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 72.4 bits (177), Expect = 4e-17
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 91 KLLIKEVQEMEQNLPNTCKTKFTN-PNHLHEFTIVI-SPDEGYWRGGKFLFSVSVPEEYN 148
K L KE+ ++ + P + N + ++ + + + G KF Y
Sbjct: 6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 65
Query: 149 MAPPKVKCLTKLW--HPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFT 204
P+V + HP++ NG ICLS+L ++ W+P ++ V + S+ +
Sbjct: 66 FDSPQVMFTGENIPVHPHVYSNGHICLSILTED------WSPALSVQSVCLSIISMLS 117
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 72.4 bits (177), Expect = 4e-17
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Query: 93 LIKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPP 152
+ KE+ N P C N + + + + + P++Y + PP
Sbjct: 3 IQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPP 62
Query: 153 KVKCLTK-LWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFT 204
V L K H ++ NGDICLSLL + + P+ + ++ + S+ +
Sbjct: 63 IVYFLQKPPKHTHVYSNGDICLSLLGDD------YNPSLSISGLVLSIISMLS 109
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 68.1 bits (166), Expect = 3e-15
Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 11/138 (7%)
Query: 89 RDKLLIKEVQEMEQNL-PNTCKTKFTNPN--HLHEFTIVIS-PDEGYWRGGKFLFSVSVP 144
R+ L++E+++ E+ P +C + + + ++ I P + S+
Sbjct: 5 RNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCG 64
Query: 145 EEYNMAPPKVKCLTKLWHPNINE-NGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLF 203
Y +PPKV ++K+ P +N G++ W ++ ++ L
Sbjct: 65 PNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRD-----WKRAYTMETLLLDLRKEM 119
Query: 204 TDLLNFDDPLNIEAAEMY 221
N + E +
Sbjct: 120 ATPANKKLR-QPKEGETF 136
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 61.5 bits (149), Expect = 8e-13
Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 15/120 (12%)
Query: 94 IKEVQEMEQNLPNTCKTKFTNPNHLHEFTIVIS-PDEGYWRGGKFLFSVSV--PEEYNMA 150
V + ++L + + + + ++ +RG + + + + Y
Sbjct: 23 TVNVITLYKDLKPVLDS-YVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYN 81
Query: 151 PPKVKCLTK-----LWHPNINENGDICLSLLRQNSIDGLGWAPTRKLKDVIWGLNSLFTD 205
PP +++ NG I L L + P L +I + +F D
Sbjct: 82 PPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEW------KHPQSDLLGLIQVMIVVFGD 135
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 52.3 bits (125), Expect = 3e-09
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 17/80 (21%)
Query: 137 FLFSVSVPEEYNMAPPKVKCLTKLW-----------HPNINENGDICLSLLRQNSIDGLG 185
+ VP Y + PP + + + I+ NG I L +L
Sbjct: 74 IPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHCW------ 127
Query: 186 WAPTRKLKDVIWGLNSLFTD 205
L V+ L SL +
Sbjct: 128 DPAAMNLIMVVQELMSLLHE 147
>d1nnva_ d.17.7.1 (A:) Hypothetical protein HI1450 {Haemophilus
influenzae [TaxId: 727]}
Length = 107
Score = 32.8 bits (75), Expect = 0.010
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 3 WVGSEEDEEEQNLLFSPALMSRRANHPNIHTL 34
WVG +++E + +F+ L+S R H +
Sbjct: 73 WVGLVNEQDEMDDVFAKFLISHREEDREFHVI 104
>d2j5wa3 b.6.1.3 (A:347-553) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 207
Score = 29.7 bits (66), Expect = 0.21
Identities = 13/73 (17%), Positives = 26/73 (35%)
Query: 103 NLPNTCKTKFTNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWH 162
+ + +PN+ + V F + +VP+E CL K+++
Sbjct: 116 RFNKNNEGTYYSPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYY 175
Query: 163 PNINENGDICLSL 175
++ DI L
Sbjct: 176 SAVDPTKDIFTGL 188
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase)
{Basidomycetos fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 357
Score = 27.7 bits (61), Expect = 1.4
Identities = 6/43 (13%), Positives = 10/43 (23%)
Query: 188 PTRKLKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRE 230
P G L +D DP + + +
Sbjct: 225 PLPLGSGSDTGEMRLQSDFALAHDPRTACIWQGFVNEQAFMAA 267
>d2csba2 a.60.2.4 (A:294-350) Topoisomerase V {Methanopyrus kandleri
[TaxId: 2320]}
Length = 57
Score = 25.0 bits (54), Expect = 1.9
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 154 VKCLTKLW-HPNINENGDICLSLLRQNSIDGLGWAPTRKLKDV 195
V+C KL I E+ +CL+ SI + P R LKDV
Sbjct: 2 VECALKLQDRYGIREDVALCLARAFDGSISMIATTPYRTLKDV 44
>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 162
Score = 26.3 bits (58), Expect = 2.6
Identities = 15/91 (16%), Positives = 22/91 (24%), Gaps = 27/91 (29%)
Query: 20 ALMSRRAN-------------HPNIHTLVHHRLDYRPHPSRQIFGYGAALWVFNM----- 61
A+M RRA P + HH D + I + M
Sbjct: 23 AVMIRRAADPNDTKRGPINAIKPTVEVPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSV 82
Query: 62 -ITLSKKLKM--------QNEGCDIVDKSSN 83
+ L K L + +K
Sbjct: 83 MVELKKPLTKDDVIDIFENTTRVLLFEKEKG 113
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max)
[TaxId: 3847]}
Length = 250
Score = 25.5 bits (55), Expect = 5.6
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 192 LKDVIWGLNSLFTDLLNFDDPLNIEAAEMYQKNKELFRE 230
L GL L +D DP+ + Y +++ F
Sbjct: 195 LSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 233
>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 140
Score = 25.1 bits (54), Expect = 6.2
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 3/101 (2%)
Query: 86 IFIRDKLLIKEVQEMEQNLPNTCKTKFTNPNHLH-EFTIVISPDEGYWRGGKFLFSVSVP 144
+F + LI Q L + + K FTI ++ D + F + +P
Sbjct: 16 MFPGENELIVNDQLAVAELKDCIEKKTMEGRSSKVYFTINMNLDVSDEKMAMFSLACILP 75
Query: 145 EEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQNSIDGLG 185
+Y P++ + L + + L G
Sbjct: 76 FKYPAVLPEITVRSVLLSRSQQT--QLNTDLTAFLQKHCHG 114
>d1sdda1 b.6.1.3 (A:1-180) Coagulation factor V {Cow (Bos taurus)
[TaxId: 9913]}
Length = 180
Score = 25.0 bits (54), Expect = 6.6
Identities = 9/63 (14%), Positives = 21/63 (33%)
Query: 113 TNPNHLHEFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDIC 172
++ + D+ G ++ + + E CLT +++ +N D
Sbjct: 96 EGASYSDHTLPMEKMDDAVAPGQEYTYEWIISEHSGPTHDDPPCLTHIYYSYVNLVEDFN 155
Query: 173 LSL 175
L
Sbjct: 156 SGL 158
>d1oa8a_ b.145.1.1 (A:) Ataxin-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 128
Score = 24.7 bits (53), Expect = 7.1
Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 10/119 (8%)
Query: 61 MITLSKKLKMQNEGCDIVDKSSNKRIFIRDKLLIKEVQE-MEQNLPNTCKTKFTNPNHLH 119
+I L+ + E D + I K+ V+ + + P +F H
Sbjct: 19 IIQLANGELKKVEDLKTEDFIQSAEISNDLKIDSSTVERIEDSHSPGVAVIQFAVGEHRA 78
Query: 120 EFTIVISPDEGYWRGGKFLFSVSVPEEYNMAPPKVKCLTKLWHPNINENGDICLSLLRQ 178
+ ++ + + ++ G+ S E + C +KL GD+C+SL +
Sbjct: 79 QVSVEVLVEYPFFVFGQGWSSCCP--ERTSQLFDLPC-SKL------SVGDVCISLTLK 128
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid
dehydrogenase, PP module {Human (Homo sapiens) [TaxId:
9606]}
Length = 395
Score = 25.2 bits (54), Expect = 9.3
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 198 GLNSLFTDLLNFDDPLNIEAAEMYQ 222
G ++ F D L F P I +Y+
Sbjct: 6 GASAEFIDKLEFIQPNVISGIPIYR 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.434
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 965,634
Number of extensions: 44927
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 41
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)