BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy461
(507 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 108/206 (52%), Gaps = 6/206 (2%)
Query: 39 YSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIF 98
Y+ E + I +S +++ + GN++V+ ++ ++ L+ V N+FI SLA ADL + +
Sbjct: 175 YAADEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLA 234
Query: 99 VLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQR 158
V+P + L+ W FG C+ W + DVLC TASI LC IA+DRY+AIT P Y
Sbjct: 235 VVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLL 294
Query: 159 TIKRVMMMIMYVWXXXXXXXXX-XXXGW-----NDWPEVFEADTPCQLTQQRGYVVYSSL 212
T + ++I+ VW W + + +T C + Y + SS+
Sbjct: 295 TKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSI 354
Query: 213 GSFFIPLAIMTLVYVEIFLATKKRLR 238
SF++PL IM VY +F K++L+
Sbjct: 355 VSFYVPLVIMVFVYSRVFQEAKRQLQ 380
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 423 KERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPII 482
KE +A +TLGIIMG F CWLPFF++ + D + I + W+GY+NSG NP+I
Sbjct: 416 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYI-LLNWIGYVNSGFNPLI 474
Query: 483 YTIFNLDFRKSFKRLL 498
Y + DFR +F+ LL
Sbjct: 475 YC-RSPDFRIAFQELL 489
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 119/225 (52%), Gaps = 7/225 (3%)
Query: 43 EWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPL 102
+WEA ++++ ++ +++ + GN++V+ ++ + + L+ + N FI SLA ADL V + V+P
Sbjct: 9 QWEAGMSLL-MALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPF 67
Query: 103 SLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKR 162
+ G W++G +C++W + DVLC TASI LC IA+DRY AIT P Y T R
Sbjct: 68 GATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRAR 127
Query: 163 VMMMIMYVWXXXXXXXXX--XXXGWNDW-PEV---FEADTPCQLTQQRGYVVYSSLGSFF 216
++I VW W D P+ ++ C R Y + SS+ SF+
Sbjct: 128 AKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFY 187
Query: 217 IPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEV 261
IPL IM V + ++ K+++R +ASK V H K +
Sbjct: 188 IPLLIMIFVALRVYREAKEQIRKIDRASKRKRVMLMREHKALKTL 232
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
Query: 414 EEKQKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGY 473
+++++ L +E +A +TLGIIMGVF CWLPFFL+ + F + + D L WLGY
Sbjct: 215 SKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVF-NRDLVPDWLFVAFNWLGY 273
Query: 474 INSGINPIIYTIFNLDFRKSFKRLL 498
NS +NPIIY + DFRK+FKRLL
Sbjct: 274 ANSAMNPIIYC-RSPDFRKAFKRLL 297
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 9/227 (3%)
Query: 43 EWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPL 102
+WEA ++++ ++ +++ + GN++V+ ++ + + L+ + N FI SLA ADL V + V+P
Sbjct: 9 QWEAGMSLL-MALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPF 67
Query: 103 SLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKR 162
+ G W++G +C++W + DVLC TASI LC IA+DRY AIT P Y T R
Sbjct: 68 GATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRAR 127
Query: 163 VMMMIMYVWXXXXXXXXX--XXXGWNDW-PEV---FEADTPCQLTQQRGYVVYSSLGSFF 216
++I VW W D P+ ++ C R Y + SS+ SF+
Sbjct: 128 AKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFY 187
Query: 217 IPLAIMTLVYVEIFLATKKRLR--DRAKASKLNIVKQTTLHNVQKEV 261
IPL IM V + ++ K+++R DRA K + V H K +
Sbjct: 188 IPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTL 234
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 414 EEKQKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGY 473
+ ++ L +E +A +TLGIIMGVF CWLPFFL+ + F + + D L WLGY
Sbjct: 217 RKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVF-NRDLVPDWLFVAFNWLGY 275
Query: 474 INSGINPIIYTIFNLDFRKSFKRLL 498
NS +NPIIY + DFRK+FKRLL
Sbjct: 276 ANSAMNPIIYC-RSPDFRKAFKRLL 299
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 6/193 (3%)
Query: 51 ICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSG 110
I +S +++ + GN++V+ ++ ++ L+ V N+FI SLA ADL + + V+P + L
Sbjct: 46 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK 105
Query: 111 RWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYV 170
W FG C+ W + DVLC TASI LC IA+DRY+AIT P Y T + ++I+ V
Sbjct: 106 MWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMV 165
Query: 171 WXXXXXXXXX-XXXGW-----NDWPEVFEADTPCQLTQQRGYVVYSSLGSFFIPLAIMTL 224
W W + + +T C + Y + SS+ SF++PL IM
Sbjct: 166 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 225
Query: 225 VYVEIFLATKKRL 237
VY +F K++L
Sbjct: 226 VYSRVFQEAKRQL 238
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 423 KERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPII 482
KE +A +TLGIIMG F CWLPFF++ + D + I + W+GY+NSG NP+I
Sbjct: 403 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYI-LLNWIGYVNSGFNPLI 461
Query: 483 YTIFNLDFRKSFKRLL 498
Y + DFR +F+ LL
Sbjct: 462 YC-RSPDFRIAFQELL 476
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 6/199 (3%)
Query: 51 ICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSG 110
I +S +++ + GN++V+ ++ ++ L+ V N+FI SLA ADL + + V+P + L
Sbjct: 39 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK 98
Query: 111 RWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYV 170
W FG C+ W + DVLC TASI LC IA+DRY+AIT P Y T + ++I+ V
Sbjct: 99 MWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMV 158
Query: 171 WXXXXXXXXX-XXXGW-----NDWPEVFEADTPCQLTQQRGYVVYSSLGSFFIPLAIMTL 224
W W + + +T C + Y + SS+ SF++PL IM
Sbjct: 159 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 218
Query: 225 VYVEIFLATKKRLRDRAKA 243
VY +F K++L+ K+
Sbjct: 219 VYSRVFQEAKRQLQKIDKS 237
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 423 KERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPII 482
KE +A +TLGIIMG F CWLPFF++ + D + I + W+GY+NSG NP+I
Sbjct: 268 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYI-LLNWIGYVNSGFNPLI 326
Query: 483 YTIFNLDFRKSFKRLL 498
Y + DFR +F+ LL
Sbjct: 327 YCR-SPDFRIAFQELL 341
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 6/193 (3%)
Query: 51 ICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSG 110
I +S +++ + GN++V+ ++ ++ L+ V N+FI SLA ADL + + V+P + L
Sbjct: 45 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK 104
Query: 111 RWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYV 170
W FG C+ W + DVLC TASI LC IA+DRY+AIT P Y T + ++I+ V
Sbjct: 105 MWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMV 164
Query: 171 WXXXXXXXXX-XXXGW-----NDWPEVFEADTPCQLTQQRGYVVYSSLGSFFIPLAIMTL 224
W W + + +T C + Y + SS+ SF++PL IM
Sbjct: 165 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 224
Query: 225 VYVEIFLATKKRL 237
VY +F K++L
Sbjct: 225 VYSRVFQEAKRQL 237
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 423 KERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPII 482
KE +A +TLGIIMG F CWLPFF++ + D + I + W+GY+NSG NP+I
Sbjct: 402 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYI-LLNWIGYVNSGFNPLI 460
Query: 483 YTIFNLDFRKSFKRLL 498
Y + DFR +F+ LL
Sbjct: 461 YC-RSPDFRIAFQELL 475
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 6/199 (3%)
Query: 51 ICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSG 110
I +S +++ + GN++V+ ++ ++ L+ V N+FI SLA ADL + + V+P + L
Sbjct: 38 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK 97
Query: 111 RWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYV 170
W FG C+ W + DVLC TASI LC IA+DRY+AIT P Y T + ++I+ V
Sbjct: 98 MWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMV 157
Query: 171 WXXXXXXXXX-XXXGW-----NDWPEVFEADTPCQLTQQRGYVVYSSLGSFFIPLAIMTL 224
W W + + +T C + Y + SS+ SF++PL IM
Sbjct: 158 WIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVF 217
Query: 225 VYVEIFLATKKRLRDRAKA 243
VY +F K++L+ K+
Sbjct: 218 VYSRVFQEAKRQLQKIDKS 236
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 423 KERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPII 482
KE +A +TLGIIMG F CWLPFF++ + D + I + W+GY+NSG NP+I
Sbjct: 267 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYI-LLNWIGYVNSGFNPLI 325
Query: 483 YTIFNLDFRKSFKRLL 498
Y + DFR +F+ LL
Sbjct: 326 YCR-SPDFRIAFQELL 340
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 6/193 (3%)
Query: 51 ICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSG 110
I +S +++ + GN++V+ ++ ++ L+ V N+FI SLA ADL + + V+P + L
Sbjct: 46 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK 105
Query: 111 RWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYV 170
W FG C+ W + DVLC TASI LC IA+DRY+AIT P Y T + ++I+ V
Sbjct: 106 MWTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMV 165
Query: 171 WXXXXXXXXX-XXXGW-----NDWPEVFEADTPCQLTQQRGYVVYSSLGSFFIPLAIMTL 224
W W + + +T C + Y + SS+ SF++PL IM
Sbjct: 166 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 225
Query: 225 VYVEIFLATKKRL 237
VY +F K++L
Sbjct: 226 VYSRVFQEAKRQL 238
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 423 KERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPII 482
KE +A +TLGIIMG F CWLPFF++ + D + I + W+GY+NSG NP+I
Sbjct: 403 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYI-LLNWIGYVNSGFNPLI 461
Query: 483 YTIFNLDFRKSFKRLL 498
Y + DFR +F+ LL
Sbjct: 462 YC-RSPDFRIAFQELL 476
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 6/199 (3%)
Query: 51 ICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSG 110
I +S +++ + GN++V+ ++ ++ L+ V N+FI SLA ADL + + V+P + L
Sbjct: 15 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK 74
Query: 111 RWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYV 170
W FG C+ W + DVLC TASI LC IA+DRY+AIT P Y T + ++I+ V
Sbjct: 75 MWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMV 134
Query: 171 WXXXXXXXXX-XXXGW-----NDWPEVFEADTPCQLTQQRGYVVYSSLGSFFIPLAIMTL 224
W W + + +T C + Y + SS+ SF++PL IM
Sbjct: 135 WIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVF 194
Query: 225 VYVEIFLATKKRLRDRAKA 243
VY +F K++L+ K+
Sbjct: 195 VYSRVFQEAKRQLQKIDKS 213
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 423 KERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPII 482
KE +A +TLGIIMG F CWLPFF++ + D + I + W+GY+NSG NP+I
Sbjct: 244 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYI-LLNWIGYVNSGFNPLI 302
Query: 483 YTIFNLDFRKSFKRLL 498
Y + DFR +F+ LL
Sbjct: 303 YCR-SPDFRIAFQELL 317
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 105/198 (53%), Gaps = 6/198 (3%)
Query: 51 ICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSG 110
I +S +++ + GN++V+ ++ ++ L+ V N+FI SLA ADL + + V+P + L+
Sbjct: 10 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTK 69
Query: 111 RWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYV 170
W FG C+ W + DVLC TASI LC IA+DRY+AIT P Y T + ++I+ V
Sbjct: 70 TWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMV 129
Query: 171 WXXXXXXXXX-XXXGW-----NDWPEVFEADTPCQLTQQRGYVVYSSLGSFFIPLAIMTL 224
W W + + +T C + Y + SS+ SF++PL IM
Sbjct: 130 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 189
Query: 225 VYVEIFLATKKRLRDRAK 242
VY +F K++L+ K
Sbjct: 190 VYSRVFQEAKRQLQKIDK 207
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Query: 387 LKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKIS--LSKERRAARTLGIIMGVFVFCWLP 444
+ S+ V V +V++ ++V ++ + QKI KE +A +TLGIIMG F CWLP
Sbjct: 173 IASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKFCLKEHKALKTLGIIMGTFTLCWLP 232
Query: 445 FFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLL 498
FF++ + D + I + W+GY+NSG NP+IY + DFR +F+ LL
Sbjct: 233 FFIVNIVHVIQDNLIRKEVYI-LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 284
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 101/193 (52%), Gaps = 6/193 (3%)
Query: 51 ICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSG 110
I +S +++ + GN++V+ ++ ++ L+ V N+FI SLA ADL + + V+P L
Sbjct: 14 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMK 73
Query: 111 RWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYV 170
W FG C+ W + DVLC TASI LC IA+DRY+AIT P Y T + ++I+ V
Sbjct: 74 MWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMV 133
Query: 171 WXXXXXXXXX-XXXGW-----NDWPEVFEADTPCQLTQQRGYVVYSSLGSFFIPLAIMTL 224
W W + + +T C + Y + SS+ SF++PL IM
Sbjct: 134 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 193
Query: 225 VYVEIFLATKKRL 237
VY +F K++L
Sbjct: 194 VYSRVFQEAKRQL 206
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 423 KERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPII 482
KE +A +TLGIIMG F CWLPFF++ + D + I + W+GY+NSG NP+I
Sbjct: 371 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYI-LLNWIGYVNSGFNPLI 429
Query: 483 YTIFNLDFRKSFKRLL 498
Y + DFR +F+ LL
Sbjct: 430 YC-RSPDFRIAFQELL 444
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 56 LIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYL---SGRW 112
LI+ + GN +V ++V + L+ N+ +VSLAVADL VA V+P + YL G W
Sbjct: 48 LILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPW--VVYLEVTGGVW 105
Query: 113 IFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQ---QRTIKRVMMMIMY 169
F I C +++T DV+ CTASI NLCAI++DRY A+ P+ Y Q + +RV +MI
Sbjct: 106 NFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITA 165
Query: 170 VWXXXXXXXXXXXXGWNDWPEVFEADTPCQLTQQRGYVVYSSLGSFFIPLAIMTLVYVEI 229
VW G+N + T C ++ +V+YSS+ SF++P + LVY I
Sbjct: 166 VWVLAFAVSCPLLFGFNTTGD----PTVCSISNP-DFVIYSSVVSFYLPFGVTVLVYARI 220
Query: 230 FLATKKRLR 238
++ K+R R
Sbjct: 221 YVVLKQRRR 229
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 57/77 (74%)
Query: 423 KERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPII 482
+E++A + + I++G F+ CWLPFFL +V C TC +S L + TWLGY+NS +NP+I
Sbjct: 395 REKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVI 454
Query: 483 YTIFNLDFRKSFKRLLN 499
YT FN++FRK+F ++L+
Sbjct: 455 YTTFNIEFRKAFLKILS 471
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 103/196 (52%), Gaps = 3/196 (1%)
Query: 45 EAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSL 104
E + ++ +L + TIIGNI+V++S+ + L+ V N+F+ SLA ADL + +F + L
Sbjct: 22 EVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYT 81
Query: 105 IYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVM 164
+Y + G W G ++C +WL D + AS++NL I+ DRY+ +T PL Y +RT K
Sbjct: 82 LYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAG 141
Query: 165 MMIMYVWXXXXXXXXXXXXGWN---DWPEVFEADTPCQLTQQRGYVVYSSLGSFFIPLAI 221
MMI W W V + + Q +++ +F++P+ I
Sbjct: 142 MMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIAAFYLPVII 201
Query: 222 MTLVYVEIFLATKKRL 237
MT++Y I A+K R+
Sbjct: 202 MTVLYWHISRASKSRI 217
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 422 SKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPI 481
S+E++ RT+ I+ F+ W P+ +M + FC C + + + WL YINS INP
Sbjct: 381 SREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPC-IPNTVWTIGYWLCYINSTINPA 439
Query: 482 IYTIFNLDFRKSFKRLL 498
Y + N F+K+FK LL
Sbjct: 440 CYALCNATFKKTFKHLL 456
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 3/195 (1%)
Query: 44 WEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLS 103
W+ + L + TIIGNI+V+++ K L+ V N+F++SLA ADL + + + L
Sbjct: 10 WQVVFIAFLTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLF 69
Query: 104 LIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRV 163
Y + RW G + C +WL+ D + AS++NL I+ DRY++IT PL Y +RT KR
Sbjct: 70 TTYIIMNRWALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRA 129
Query: 164 MMMIMYVWXXXXXXXXXXXXGWNDW---PEVFEADTPCQLTQQRGYVVYSSLGSFFIPLA 220
+MI W W + V + Q + +++ +F++P+
Sbjct: 130 GVMIGLAWVISFVLWAPAILFWQYFVGKRTVPPGECFIQFLSEPTITFGTAIAAFYMPVT 189
Query: 221 IMTLVYVEIFLATKK 235
IMT++Y I+ T+K
Sbjct: 190 IMTILYWRIYKETEK 204
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 402 QAP--STQVVKQFIEEKQKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCC 459
Q P + +V+ F L KE++AA+TL I+ F+ W P+ +M + FCD+ C
Sbjct: 345 QTPNRAKRVITTFRTGTWDAYLIKEKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDS-C 403
Query: 460 MSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLL 498
+ N WL YINS +NP+ Y + N FR +FK LL
Sbjct: 404 IPKTYWNLGYWLCYINSTVNPVCYALCNKTFRTTFKTLL 442
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 419 ISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGI 478
+ +++ER+AA+ LG IM F+ CW+P+F+ ++ + FC CC ++ L F WLGYINS +
Sbjct: 363 LHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCC-NEHLHMFTIWLGYINSTL 421
Query: 479 NPIIYTIFNLDFRKSFKRLLN 499
NP+IY + N +F+K+FKR+L+
Sbjct: 422 NPLIYPLCNENFKKTFKRILH 442
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 101/191 (52%), Gaps = 5/191 (2%)
Query: 50 MICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLS 109
++ LST+ + T+ N++V+ +V + + L V N +IVSL+VADL V V+P++++Y L
Sbjct: 12 VVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLM 71
Query: 110 GRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMY 169
+W G +C WL+ D + TASI ++ + +DRY ++ PL Y + RT R I+
Sbjct: 72 SKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILG 131
Query: 170 VWXXXXXXXXXXXXGWNDWPE--VFEADTPCQ--LTQQRGYVVYSSLGSFFIPLAIMTLV 225
W GWN + + + C+ + V +++ +F++P +M
Sbjct: 132 AW-FLSFLWVIPILGWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWF 190
Query: 226 YVEIFLATKKR 236
Y +I+ A ++
Sbjct: 191 YAKIYKAVRQH 201
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 17/194 (8%)
Query: 60 TIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIIC 119
I+GN++V +V+ L+ V N+F+VSLA AD+ V + +P ++ +S + C
Sbjct: 45 AILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGC 102
Query: 120 KIWLTSDVLCCT-ASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWXXXXXXX 178
+++ VL T +SI +L AIA+DRY AI PL Y T R +I W
Sbjct: 103 -LFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIG 161
Query: 179 XXXXXGWNDWPEVFEADTPCQLTQQ------------RGYVVY-SSLGSFFIPLAIMTLV 225
GWN+ + E Q + Y+VY + +PL +M V
Sbjct: 162 LTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGV 221
Query: 226 YVEIFLATKKRLRD 239
Y+ IFLA +++L D
Sbjct: 222 YLRIFLAARRQLAD 235
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 415 EKQKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITW-LGY 473
E+ + +L KE AA++L II+G+F CWLP ++ FC C + + ++ L +
Sbjct: 340 ERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSH 399
Query: 474 INSGINPIIYTIFNLDFRKSFKRLLNKVSLSRER 507
NS +NP IY +FR++F++++ L ++
Sbjct: 400 TNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQE 433
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 26/221 (11%)
Query: 60 TIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIIC 119
I+GN++V +V+ L+ V N+F+VSLA AD+ V + +P ++ +S + C
Sbjct: 20 AILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGC 77
Query: 120 KIWLTSDVLCCT-ASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWXXXXXXX 178
+++ VL T +SI +L AIA+DRY AI PL Y T R +I W
Sbjct: 78 -LFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIG 136
Query: 179 XXXXXGWNDWPEVFEADTPCQLTQQRG---------------YVVY-SSLGSFFIPLAIM 222
GWN+ + E Q +Q G Y+VY + +PL +M
Sbjct: 137 LTPMLGWNNCGQPKEGK---QHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLM 193
Query: 223 TLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQS 263
VY+ IFLA +++L+ ++TL QKEV +
Sbjct: 194 LGVYLRIFLAARRQLKQMESQPLPGERARSTL---QKEVHA 231
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 415 EKQKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITW-LGY 473
E+ + +L KE AA++L II+G+F CWLP ++ FC C + + ++ L +
Sbjct: 219 ERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSH 278
Query: 474 INSGINPIIYTIFNLDFRKSFKRLLNKVSLSRE 506
NS +NP IY +FR++F++++ L ++
Sbjct: 279 TNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQ 311
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 17/192 (8%)
Query: 60 TIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIIC 119
I+GN++V +V+ L+ V N+F+VSLA AD+ V + +P ++ +S + C
Sbjct: 35 AILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGC 92
Query: 120 KIWLTSDVLCCT-ASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWXXXXXXX 178
+++ VL T +SI +L AIA+DRY AI PL Y T R +I W
Sbjct: 93 -LFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIG 151
Query: 179 XXXXXGWNDWPEVFEADTPCQLTQQR------------GYVVY-SSLGSFFIPLAIMTLV 225
GWN+ + E Q + Y+VY + +PL +M V
Sbjct: 152 LTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGV 211
Query: 226 YVEIFLATKKRL 237
Y+ IFLA +++L
Sbjct: 212 YLRIFLAARRQL 223
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 415 EKQKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITW-LGY 473
+ + +L KE AA++L II+G+F CWLP ++ FC C + + ++ L +
Sbjct: 381 DAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSH 440
Query: 474 INSGINPIIYTIFNLDFRKSFKRLLNKVSLSRE 506
NS +NP IY +FR++F++++ L ++
Sbjct: 441 TNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQ 473
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 100/218 (45%), Gaps = 20/218 (9%)
Query: 60 TIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIIC 119
I+GN++V +V+ L+ V N+F+VS A AD+ V + +P ++ +S + C
Sbjct: 20 AILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGC 77
Query: 120 KIWLTSDVLCCTA-SILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWXXXXXXX 178
+++ VL TA SI +L AIA+DRY AI PL Y T R +I W
Sbjct: 78 -LFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIG 136
Query: 179 XXXXXGWNDWPEVFEADTPCQLTQQ------------RGYVVY-SSLGSFFIPLAIMTLV 225
GWN+ + E Q + Y+VY + +PL +M V
Sbjct: 137 LTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGV 196
Query: 226 YVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQS 263
Y+ IFLA +++L+ ++TL QKEV +
Sbjct: 197 YLRIFLAARRQLKQMESQPLPGERARSTL---QKEVHA 231
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 415 EKQKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITW-LGY 473
E+ + +L KE AA++L II+G+F CWLP ++ FC C + + ++ L +
Sbjct: 219 ERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSH 278
Query: 474 INSGINPIIYTIFNLDFRKSFKRLLNKVSLSRER 507
NS +NP IY +FR++F++++ L ++
Sbjct: 279 TNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQE 312
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 96/217 (44%), Gaps = 18/217 (8%)
Query: 60 TIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIIC 119
I+GN++V +V+ L+ V N+F+VSLA AD+ V + +P ++ +S + C
Sbjct: 20 AILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAIT--ISTGFCAACHGC 77
Query: 120 KIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWXXXXXXXX 179
++ +SI +L AIA+DRY AI PL Y T R +I W
Sbjct: 78 LFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAIGL 137
Query: 180 XXXXGWNDWPEVFEADTPCQLTQQ------------RGYVVY-SSLGSFFIPLAIMTLVY 226
GWN+ + E Q + Y+VY + +PL +M VY
Sbjct: 138 TPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVY 197
Query: 227 VEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQS 263
+ IF A +++L+ ++TL QKEV +
Sbjct: 198 LRIFAAARRQLKQMESQPLPGERARSTL---QKEVHA 231
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 415 EKQKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITW-LGY 473
E+ + +L KE AA++ II G+F CWLP ++ FC C + + ++ L +
Sbjct: 219 ERARSTLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLAH 278
Query: 474 INSGINPIIYTIFNLDFRKSFKRLLNKVSLSRER 507
NS +NP IY +FR++F++++ L ++
Sbjct: 279 TNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQE 312
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 46 AIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLI 105
AI M S + + + GN +V+ + Y ++ N +I +LA+AD +A LP +
Sbjct: 17 AITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALAD-ALATSTLPFQSV 75
Query: 106 YYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRT 159
YL G W FG I+CKI ++ D SI LC +++DRY A+ P+ RT
Sbjct: 76 NYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRT 129
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 425 RRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITW-----LGYINSGIN 479
RR R + +++ VF+ CW P + YV + T + + ++W LGY NS +N
Sbjct: 379 RRITRMVLVVVAVFIVCWTPIHI-YVIIKALIT--IPETTFQTVSWHFCIALGYTNSCLN 435
Query: 480 PIIYTIFNLDFRKSFKRL 497
P++Y + +F++ F+
Sbjct: 436 PVLYAFLDENFKRCFREF 453
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 9/148 (6%)
Query: 24 EEKQYYPSAFFNNIEYSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNF 83
E+ Q P+ +I ++P IIT + ++G ++GN +V+ + Y ++ N
Sbjct: 8 EDAQLEPA----HISPAIP---VIITAVYSVVFVVG-LVGNSLVMFVIIRYTKMKTATNI 59
Query: 84 FIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALD 143
+I +LA+AD V +P YL W FG ++CKI L+ D SI L +++D
Sbjct: 60 YIFNLALADALVTT-TMPFQSTVYLMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVD 118
Query: 144 RYWAITDPLVYAQQRTIKRVMMMIMYVW 171
RY A+ P+ RT + ++ + +W
Sbjct: 119 RYIAVCHPVKALDFRTPLKAKIINICIW 146
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 425 RRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLIN--FITWLGYINSGINPII 482
RR R + +++ VFV CW P + + T + L + F LGY NS +NPI+
Sbjct: 392 RRITRLVLVVVAVFVVCWTPIHIFILVEALGSTSHSTAALSSYYFCIALGYTNSSLNPIL 451
Query: 483 YTIFNLDFRKSFKRLLNKVSLSRER 507
Y + +F++ F+ + + ER
Sbjct: 452 YAFLDENFKRCFRDFCFPLKMRMER 476
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 10/179 (5%)
Query: 75 KPLRIVQNFFIVSLAVADLTVAIF-VLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTAS 133
K L+ N FI++LA +D T ++ PL I +WIFG CK++ + S
Sbjct: 62 KSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMS 121
Query: 134 ILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWXXXXXXXXXXXXGWNDWPEVFE 193
I+ + I++DRY I P+ +++ + +R +MI++VW GW + E
Sbjct: 122 IMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAY--TLE 179
Query: 194 A-------DTPCQLTQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASK 245
D + + R ++ + FF P+ I+ Y I ++ ++ A +K
Sbjct: 180 GVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAK 238
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 12/205 (5%)
Query: 75 KPLRIVQNFFIVSLAVADLTVAIF-VLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTAS 133
K L+ N FI++LA +D T ++ PL I +WIFG CK++ + S
Sbjct: 63 KSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMS 122
Query: 134 ILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWXXXXXXXXXXXXGWNDWPEVFE 193
I+ + I++DRY I P+ +++ + +R +MI++VW GW + E
Sbjct: 123 IMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAY--TLE 180
Query: 194 A-------DTPCQLTQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKL 246
D + + R ++ + FF P+ I+ Y I ++ ++ A +K
Sbjct: 181 GVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKR 240
Query: 247 NIVKQTTLHNVQKEVQSPLEPESIS 271
K+ L Q + + IS
Sbjct: 241 LNAKE--LRKAQAGANAEMRLAKIS 263
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 61 IIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICK 120
++GN++V+ + Y L+ N +I +LA+AD +A LP YL W FG ++CK
Sbjct: 29 LLGNVLVMFGIVRYTKLKTATNIYIFNLALAD-ALATSTLPFQSAKYLMETWPFGELLCK 87
Query: 121 IWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVW 171
L+ D SI L +++DRY A+ P+ RT + ++ + +W
Sbjct: 88 AVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIW 138
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 425 RRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLI----NFITWLGYINSGINP 480
RR R + +++G FV CW P + + D D L+ + LGY NS +NP
Sbjct: 376 RRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDIN-RRDPLVVAALHLCIALGYANSSLNP 434
Query: 481 IIYTIFNLDFRKSFKRL 497
++Y + +F++ F++L
Sbjct: 435 VLYAFLDENFKRCFRQL 451
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 58 IGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGII 117
+G ++GN +V+ + + ++ N +I +LA+AD T+ + LP L G W FG
Sbjct: 137 VGGLLGNCLVMYVILRHTKMKTATNIYIFNLALAD-TLVLLTLPFQGTDILLGFWPFGNA 195
Query: 118 ICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVW 171
+CK + D S L A+++DRY AI P+ RT + + + +W
Sbjct: 196 LCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIW 249
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 425 RRAARTLGIIMGVFVFCWLPF--FLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPII 482
RR R + +++ VFV CW P F++ L + + ++ F T LGY+NS +NPI+
Sbjct: 333 RRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPIL 392
Query: 483 YTIFNLDFRKSFKRLLNKVSLSR 505
Y + +F+ F++ +L R
Sbjct: 393 YAFLDENFKACFRKFCCASALGR 415
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 75/133 (56%)
Query: 38 EYSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAI 97
++ P W+ ++ + +++ +++GN++V+ + +K +R V N+F+V+LA A+ ++A
Sbjct: 24 QFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAA 83
Query: 98 FVLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQ 157
F ++ Y + W +G+ CK + ASI ++ A+A DRY AI PL
Sbjct: 84 FNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRLS 143
Query: 158 RTIKRVMMMIMYV 170
T +V++ +++V
Sbjct: 144 ATATKVVICVIWV 156
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 414 EEKQKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLIN----FIT 469
++ +S +R+ + + +++ F CWLPF + ++ LP+ + + I I
Sbjct: 233 SDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFL-LPYINPDLYLKKFIQQVYLAIM 291
Query: 470 WLGYINSGINPIIYTIFNLDFRKSFKR 496
WL ++ NPIIY N FR FK
Sbjct: 292 WLAMSSTMYNPIIYCCLNDRFRLGFKH 318
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 86/208 (41%), Gaps = 22/208 (10%)
Query: 64 NIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWL 123
N + + +K LR N+ +++LAVADL + +L L G ++FG C +
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEG 115
Query: 124 TSDVLCCTASILNLCAIALDRYWAITDPLV---YAQQRTIKRVMMMIMYVWXXXXXXXXX 180
L ++ +L +A++RY + P+ + + I M + + W
Sbjct: 116 FFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAI----MGVAFTWVMALACAAP 171
Query: 181 XXXGWNDW-PEVFEAD------TPCQLTQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLAT 233
GW+ + PE + TP + T +V+Y + F IPL ++ Y ++
Sbjct: 172 PLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV 231
Query: 234 KKRLRDRAKASKLNIVKQTTLHNVQKEV 261
K+ + +++ T +KEV
Sbjct: 232 KEAAAQQQESA--------TTQKAEKEV 251
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 86/208 (41%), Gaps = 22/208 (10%)
Query: 64 NIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWL 123
N + + +K LR N+ +++LAVADL + +L L G ++FG C +
Sbjct: 55 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEG 114
Query: 124 TSDVLCCTASILNLCAIALDRYWAITDPLV---YAQQRTIKRVMMMIMYVWXXXXXXXXX 180
L ++ +L +A++RY + P+ + + I M + + W
Sbjct: 115 FFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAI----MGVAFTWVMALACAAP 170
Query: 181 XXXGWNDW-PEVFEAD------TPCQLTQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLAT 233
GW+ + PE + TP + T +V+Y + F IPL ++ Y ++
Sbjct: 171 PLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV 230
Query: 234 KKRLRDRAKASKLNIVKQTTLHNVQKEV 261
K+ + +++ T +KEV
Sbjct: 231 KEAAAQQQESA--------TTQKAEKEV 250
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 86/208 (41%), Gaps = 22/208 (10%)
Query: 64 NIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWL 123
N + + +K LR N+ +++LAVADL + +L L G ++FG C +
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLQG 115
Query: 124 TSDVLCCTASILNLCAIALDRYWAITDPLV---YAQQRTIKRVMMMIMYVWXXXXXXXXX 180
L ++ +L +A++RY + P+ + + I M + + W
Sbjct: 116 FFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAI----MGVAFTWVMALACAAP 171
Query: 181 XXXGWNDW-PEVFEAD------TPCQLTQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLAT 233
GW+ + PE + TP + T +V+Y + F IPL ++ Y ++
Sbjct: 172 PLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV 231
Query: 234 KKRLRDRAKASKLNIVKQTTLHNVQKEV 261
K+ + +++ T +KEV
Sbjct: 232 KEAAAQQQESA--------TTQKAEKEV 251
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 409 VKQFIEEKQKISLSK--ERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLIN 466
VK+ ++Q+ + ++ E+ R + I++ F+ CWLP+ + + C +
Sbjct: 231 VKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMT 290
Query: 467 FITWLGYINSGINPIIYTIFNLDFR 491
+ ++ NP+IY + N FR
Sbjct: 291 IPAFFAKTSAVYNPVIYIMMNKQFR 315
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 86/208 (41%), Gaps = 22/208 (10%)
Query: 64 NIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWL 123
N + + +K LR N+ +++LAVADL + +L L G ++FG C +
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEG 115
Query: 124 TSDVLCCTASILNLCAIALDRYWAITDPLV---YAQQRTIKRVMMMIMYVWXXXXXXXXX 180
L ++ +L +A++RY + P+ + + I M + + W
Sbjct: 116 FFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAI----MGVAFTWVMALACAAP 171
Query: 181 XXXGWNDW-PEVFEAD------TPCQLTQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLAT 233
GW+ + PE + TP + T +V+Y + F IPL ++ Y ++
Sbjct: 172 PLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV 231
Query: 234 KKRLRDRAKASKLNIVKQTTLHNVQKEV 261
K+ + +++ T +KEV
Sbjct: 232 KEAAAQQQESA--------TTQKAEKEV 251
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 409 VKQFIEEKQKISLSK--ERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLIN 466
VK+ ++Q+ + ++ E+ R + I++ F+ CWLP+ + + C +
Sbjct: 231 VKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMT 290
Query: 467 FITWLGYINSGINPIIYTIFNLDFR 491
+ ++ NP+IY + N FR
Sbjct: 291 IPAFFAKTSAVYNPVIYIMMNKQFR 315
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 86/208 (41%), Gaps = 22/208 (10%)
Query: 64 NIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWL 123
N + + +K LR N+ +++LAVADL + +L L G ++FG C +
Sbjct: 55 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEG 114
Query: 124 TSDVLCCTASILNLCAIALDRYWAITDPLV---YAQQRTIKRVMMMIMYVWXXXXXXXXX 180
L ++ +L +A++RY + P+ + + I M + + W
Sbjct: 115 FFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAI----MGVAFTWVMALACAAP 170
Query: 181 XXXGWNDW-PEVFEAD------TPCQLTQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLAT 233
GW+ + PE + TP + T +V+Y + F IPL ++ Y ++
Sbjct: 171 PLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV 230
Query: 234 KKRLRDRAKASKLNIVKQTTLHNVQKEV 261
K+ + +++ T +KEV
Sbjct: 231 KEAAAQQQESA--------TTQKAEKEV 250
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 409 VKQFIEEKQKISLSK--ERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLIN 466
VK+ ++Q+ + ++ E+ R + I++ F+ CWLP+ + + C +
Sbjct: 230 VKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMT 289
Query: 467 FITWLGYINSGINPIIYTIFNLDFR 491
+ ++ NP+IY + N FR
Sbjct: 290 IPAFFAKTSAVYNPVIYIMMNKQFR 314
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 86/208 (41%), Gaps = 22/208 (10%)
Query: 64 NIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWL 123
N + + +K LR N+ +++LAVADL + +L L G ++FG C +
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEG 115
Query: 124 TSDVLCCTASILNLCAIALDRYWAITDPLV---YAQQRTIKRVMMMIMYVWXXXXXXXXX 180
L ++ +L +A++RY + P+ + + I M + + W
Sbjct: 116 FFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAI----MGVAFTWVMALACAAP 171
Query: 181 XXXGWNDW-PEVFEAD------TPCQLTQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLAT 233
GW+ + PE + TP + T +V+Y + F IPL ++ Y ++
Sbjct: 172 PLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV 231
Query: 234 KKRLRDRAKASKLNIVKQTTLHNVQKEV 261
K+ + +++ T +KEV
Sbjct: 232 KEAAAQQQESA--------TTQKAEKEV 251
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 409 VKQFIEEKQKISLSK--ERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLIN 466
VK+ ++Q+ + ++ E+ R + I + F+ CWLP+ + + C +
Sbjct: 231 VKEAAAQQQESATTQKAEKEVTRMVIIYVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMT 290
Query: 467 FITWLGYINSGINPIIYTIFNLDFR 491
+ ++ NP+IY + N FR
Sbjct: 291 IPAFFAKTSAVYNPVIYIMMNKQFR 315
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 429 RTLGIIMGVFVFCWLPFFLMYVSLPFCD--TCCMSDRLINFITWLGYINSGINPIIYTIF 486
+T+ I++ VF+ CW P F++ + C TC + R F+ L +NSG NPIIYT+
Sbjct: 421 KTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLV-LAVLNSGTNPIIYTLT 479
Query: 487 NLDFRKSFKRLLNK 500
N + R++F R++ +
Sbjct: 480 NKEMRRAFIRIMGR 493
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 78/178 (43%), Gaps = 8/178 (4%)
Query: 61 IIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICK 120
I+ NI V+++++ K +FI +LA++DL + L LSG + + +
Sbjct: 78 ILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLL---LSGATTYKLTPAQ 134
Query: 121 IWL--TSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWXXXXXXX 178
+L S + +AS+ +L AIA++RY + ++ R+ ++I W
Sbjct: 135 WFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSNNF-RLFLLISACWVISLILG 193
Query: 179 XXXXXGWNDWPEVFEADTPCQLTQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKR 236
GWN + T L + Y+++ + F + L + ++Y I+ + R
Sbjct: 194 GLPIMGWNCISALSSCSTVLPLYHKH-YILFCT-TVFTLLLLSIVILYCRIYSLVRTR 249
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 64 NIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGR-WIFGIIICKIW 122
NIM ++ ++ +++ LA AD+ + + VLP + YY SG W FG +C+ +
Sbjct: 38 NIMAIVVFILKMKVKKPAVVYMLHLATADV-LFVSVLPFKISYYFSGSDWQFGSELCR-F 95
Query: 123 LTSDVLC-CTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVW 171
+T+ C ASIL + I++DR+ A+ P+ RT+ R + +W
Sbjct: 96 VTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIW 145
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 418 KISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSD---------RLINFI 468
K + ++ RA R + ++ +F+ CWLP+ L+ ++ T + + R ++
Sbjct: 203 KAHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDAT 262
Query: 469 TWLGYINSGINPIIYTIFNLDFRKSFKRLL 498
LG+++S +NPIIY +FR F ++L
Sbjct: 263 EILGFLHSCLNPIIYAFIGQNFRHGFLKIL 292
>pdb|1HLL|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 131 TASILNLCAIALDRYWAITDPLVYAQQRTIKR 162
T+SI++LCAI+LDRYW+IT + Y +RT +R
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>pdb|1HOF|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 132 ASILNLCAIALDRYWAITDPLVYAQQRTIKR 162
+SI++LCAI+LDRYW+IT + Y +RT +R
Sbjct: 2 SSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 54 STLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWI 113
S + + I+GN +V++ + K LR + + + + L+VADL I LP + ++ W
Sbjct: 56 SIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAVA-NWY 113
Query: 114 FGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYV 170
FG +CK + +S+ L I+LDRY AI QR K + ++YV
Sbjct: 114 FGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHAT--NSQRPRKLLAEKVVYV 168
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 423 KERRAARTLGIIMGVFVFCWLPFF---------LMYVSLPFCDTCCMSDRLINFITWLGY 473
++R+A +T I++ F CWLP++ L+ + C+ + I+ L +
Sbjct: 407 QKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAF 466
Query: 474 INSGINPIIYTIFNLDFRKSFKRLLNKVS 502
+ +NPI+Y F+ S + L VS
Sbjct: 467 FHCCLNPILYAFLGAKFKTSAQHALTSVS 495
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 54 STLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWI 113
S + + I+GN +V++ + K LR + + + + L+VADL I LP + ++ W
Sbjct: 56 SIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAVA-NWY 113
Query: 114 FGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYV 170
FG +CK + +S+ L I+LDRY AI QR K + ++YV
Sbjct: 114 FGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHAT--NSQRPRKLLAEKVVYV 168
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 423 KERRAARTLGIIMGVFVFCWLPFF---------LMYVSLPFCDTCCMSDRLINFITWLGY 473
++R+A +T I++ F CWLP++ L+ + C+ + I+ L +
Sbjct: 407 QKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAF 466
Query: 474 INSGINPIIYTIFNLDFRKSFKRLL 498
+ +NPI+Y F+ S + L
Sbjct: 467 FHCCLNPILYAFLGAKFKTSAQHAL 491
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 54 STLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWI 113
S + + I+GN +V++ + K LR + + + + L+VADL I LP + ++ W
Sbjct: 56 SIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAVA-NWY 113
Query: 114 FGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYV 170
FG +CK + +S+ L I+LDRY AI QR K + ++YV
Sbjct: 114 FGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHAT--NSQRPRKLLAEKVVYV 168
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 420 SLSKERRAARTLGIIMGVFVFCWLPFF---------LMYVSLPFCDTCCMSDRLINFITW 470
S ++R+A + I++ F CWLP++ L+ + C+ + I+
Sbjct: 401 SGHQKRKALKPTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEA 460
Query: 471 LGYINSGINPIIYTIFNLDFRKSFKRLL 498
L + + +NPI+Y F+ S + L
Sbjct: 461 LAFFHCCLNPILYAFLGAKFKTSAQHAL 488
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 45 EAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQ---NFFIVSLAVADLTVAIFVLP 101
+ ++T I L+ ++GT+ GN + + ++ K L+ +Q ++ + SLA++DL + + +P
Sbjct: 32 KVLVTAIYLALFVVGTV-GNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMP 90
Query: 102 LSLIYYL--SGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRT 159
+ L ++ W FG C+ + C A+ LN+ ++++ RY AI P +
Sbjct: 91 VELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMS 150
Query: 160 IKRVMMMIMYVW 171
R I +W
Sbjct: 151 RSRTKKFISAIW 162
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 17/70 (24%)
Query: 437 VFVFCWLPFFLMYVSLPFCDTCCMSDR-----LINFITW-------LGYINSGINPIIYT 484
FV CWLP+ + + C +SD L +F + L Y +S INPI+Y
Sbjct: 417 AFVVCWLPYHVRRLMF-----CYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYN 471
Query: 485 IFNLDFRKSF 494
+ + +FR+ F
Sbjct: 472 LVSANFRQVF 481
>pdb|1HO9|A Chain A, Best 20 Nmr Conformers Of D130i Mutant T3-I2, A 32 Residue
Peptide From The Alpha 2a Adrenergic Receptor
pdb|1HOD|A Chain A, Nmr Structure Of D130i Mutant T3-I2, A 32 Residue Peptide
From The Alpha 2a Adrenergic Receptor
Length = 32
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 132 ASILNLCAIALDRYWAITDPLVYAQQRTIKR 162
+SI++LCAI+L RYW+IT + Y +RT +R
Sbjct: 2 SSIVHLCAISLIRYWSITQAIEYNLKRTPRR 32
>pdb|2KOE|A Chain A, Human Cannabinoid Receptor 1 - Helix 78 PEPTIDE
Length = 40
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 467 FITWLGYINSGINPIIYTIFNLDFRKSFKRLL 498
F + L +NS +NPIIY + + D R +F+ +
Sbjct: 5 FASMLCLLNSTVNPIIYALRSKDLRHAFRSMF 36
>pdb|2KI9|A Chain A, Human Cannabinoid Receptor-2 Helix 6
Length = 33
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 426 RAARTLGIIMGVFVFCWLPFF-LMYVSL 452
R A+TLG+++ V + CW P LM SL
Sbjct: 3 RLAKTLGLVLAVLLICWFPVLALMAHSL 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,281,523
Number of Sequences: 62578
Number of extensions: 437855
Number of successful extensions: 1172
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1005
Number of HSP's gapped (non-prelim): 89
length of query: 507
length of database: 14,973,337
effective HSP length: 103
effective length of query: 404
effective length of database: 8,527,803
effective search space: 3445232412
effective search space used: 3445232412
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)