Query psy461
Match_columns 507
No_of_seqs 210 out of 1652
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 21:18:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4220|consensus 100.0 2.5E-52 5.5E-57 381.3 18.2 456 40-506 24-493 (503)
2 KOG4219|consensus 100.0 1.8E-46 3.8E-51 344.6 16.8 292 38-502 27-337 (423)
3 PHA03234 DNA packaging protein 100.0 1.2E-41 2.6E-46 327.7 27.9 274 40-501 26-317 (338)
4 PHA03235 DNA packaging protein 100.0 1.8E-39 3.9E-44 319.3 27.7 273 43-501 29-324 (409)
5 PHA02834 chemokine receptor-li 100.0 3E-39 6.5E-44 311.5 23.3 186 44-235 26-218 (323)
6 PHA02638 CC chemokine receptor 100.0 2.3E-37 5E-42 305.9 28.1 274 43-502 95-399 (417)
7 PHA03087 G protein-coupled che 100.0 4.7E-36 1E-40 292.3 25.3 276 43-504 37-327 (335)
8 PF00001 7tm_1: 7 transmembran 100.0 8.8E-34 1.9E-38 265.8 22.1 252 63-483 1-257 (257)
9 KOG2087|consensus 99.9 4.2E-27 9.2E-32 215.0 4.7 180 51-235 29-221 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.9 4.6E-23 9.9E-28 191.3 14.2 252 58-498 2-257 (257)
11 PF10324 7TM_GPCR_Srw: Serpent 99.9 1.1E-20 2.4E-25 182.6 20.0 273 55-501 5-318 (318)
12 PF10328 7TM_GPCR_Srx: Serpent 99.8 8.8E-19 1.9E-23 165.2 22.8 181 55-240 2-191 (274)
13 PF05296 TAS2R: Mammalian tast 99.8 1.3E-15 2.7E-20 144.5 28.1 286 44-502 4-303 (303)
14 PF10323 7TM_GPCR_Srv: Serpent 99.7 5.1E-16 1.1E-20 146.1 19.1 181 57-238 5-195 (283)
15 PF05462 Dicty_CAR: Slime mold 99.7 5.6E-14 1.2E-18 131.5 27.9 148 45-204 5-152 (303)
16 PF10321 7TM_GPCR_Srt: Serpent 99.7 3.3E-14 7.1E-19 133.8 22.9 280 44-505 30-312 (313)
17 PF10317 7TM_GPCR_Srd: Serpent 99.3 3.2E-09 7E-14 100.9 24.7 129 51-185 3-143 (292)
18 PF11710 Git3: G protein-coupl 99.3 6.3E-10 1.4E-14 98.4 18.0 161 75-239 30-200 (201)
19 PF03402 V1R: Vomeronasal orga 99.0 3.6E-10 7.7E-15 103.0 6.3 164 78-243 8-184 (265)
20 PF10292 7TM_GPCR_Srab: Serpen 99.0 4.9E-07 1.1E-11 87.2 28.1 132 47-179 17-155 (324)
21 KOG4193|consensus 99.0 7.6E-08 1.6E-12 98.3 21.8 166 58-239 331-498 (610)
22 PF02118 Srg: Srg family chemo 98.9 1.8E-07 3.9E-12 88.5 18.8 125 55-180 6-141 (275)
23 PF10327 7TM_GPCR_Sri: Serpent 98.8 7.2E-07 1.6E-11 84.9 21.6 71 421-493 232-302 (303)
24 KOG4564|consensus 98.8 7.2E-07 1.6E-11 87.3 19.8 179 51-238 149-339 (473)
25 PF02101 Ocular_alb: Ocular al 98.8 2E-06 4.3E-11 80.5 21.5 142 82-237 68-220 (405)
26 PF10326 7TM_GPCR_Str: Serpent 98.7 1.8E-08 3.9E-13 96.8 4.9 72 421-495 235-307 (307)
27 PF10318 7TM_GPCR_Srh: Serpent 98.6 1.7E-05 3.8E-10 76.0 22.2 136 49-186 6-150 (302)
28 PF10316 7TM_GPCR_Srbc: Serpen 98.5 3E-05 6.5E-10 71.9 21.3 184 47-230 6-195 (273)
29 PF02117 7TM_GPCR_Sra: Serpent 98.4 0.00078 1.7E-08 64.9 28.0 110 44-154 18-136 (328)
30 PF10319 7TM_GPCR_Srj: Serpent 98.4 0.00015 3.2E-09 67.4 21.6 72 420-493 237-309 (310)
31 PF04789 DUF621: Protein of un 98.3 6E-05 1.3E-09 67.4 17.5 187 47-235 13-215 (305)
32 PF03125 Sre: C. elegans Sre G 98.3 0.00067 1.4E-08 66.7 26.9 114 44-157 24-161 (365)
33 PF00002 7tm_2: 7 transmembran 98.0 1.8E-06 4E-11 79.9 1.9 128 53-185 7-134 (242)
34 PF02076 STE3: Pheromone A rec 97.4 0.025 5.5E-07 52.9 18.3 138 60-204 4-144 (283)
35 PF01534 Frizzled: Frizzled/Sm 97.3 0.17 3.7E-06 48.5 23.9 156 45-204 7-175 (328)
36 PF10322 7TM_GPCR_Sru: Serpent 97.2 0.057 1.2E-06 51.2 19.1 121 116-237 100-226 (307)
37 PF11970 Git3_C: G protein-cou 97.2 0.00071 1.5E-08 49.0 4.9 70 421-490 4-74 (76)
38 PF06681 DUF1182: Protein of u 96.3 0.058 1.3E-06 46.5 10.5 99 50-153 44-151 (226)
39 PF02175 7TM_GPCR_Srb: Serpent 95.9 1.2 2.6E-05 39.8 19.6 44 114-157 80-123 (236)
40 PF03383 Serpentine_r_xa: Caen 94.1 0.062 1.3E-06 44.7 3.8 60 124-183 49-108 (153)
41 KOG4289|consensus 92.7 1.5 3.3E-05 48.8 12.1 63 425-495 2337-2399(2531)
42 PF01528 Herpes_glycop: Herpes 68.8 1.2E+02 0.0027 29.7 15.1 36 206-241 301-336 (374)
43 COG1230 CzcD Co/Zn/Cd efflux s 57.8 1.4E+02 0.0031 28.2 10.6 70 52-124 126-196 (296)
44 PF06814 Lung_7-TM_R: Lung sev 51.6 2.2E+02 0.0047 27.0 25.9 27 212-238 187-214 (295)
45 PF04238 DUF420: Protein of un 48.3 80 0.0017 25.9 6.5 41 417-457 27-67 (133)
46 PF09726 Macoilin: Transmembra 46.7 4.1E+02 0.009 28.8 19.0 17 159-175 115-131 (697)
47 PF13853 7tm_4: Olfactory rece 45.9 1.1 2.4E-05 37.4 -4.8 74 164-238 4-89 (144)
48 KOG1056|consensus 43.9 2.3E+02 0.0051 31.2 10.8 73 17-90 527-609 (878)
49 PF09726 Macoilin: Transmembra 41.8 2.3E+02 0.0049 30.7 10.4 26 83-109 78-103 (697)
50 KOG4193|consensus 41.8 4.6E+02 0.0099 27.9 14.0 35 208-242 546-580 (610)
51 KOG4220|consensus 40.9 3.8E+02 0.0083 26.8 15.8 36 467-502 458-493 (503)
52 PF03904 DUF334: Domain of unk 40.7 49 0.0011 29.5 4.4 33 204-236 195-227 (230)
53 PF11446 DUF2897: Protein of u 37.5 42 0.00091 22.6 2.7 23 51-73 6-28 (55)
54 PF09889 DUF2116: Uncharacteri 36.0 86 0.0019 21.5 4.1 22 422-443 33-54 (59)
55 PF15383 TMEM237: Transmembran 35.1 1.5E+02 0.0032 27.4 6.8 43 141-184 156-199 (253)
56 PHA03235 DNA packaging protein 33.5 5E+02 0.011 26.0 19.5 26 216-241 296-321 (409)
57 PF09882 DUF2109: Predicted me 33.0 1.1E+02 0.0024 22.1 4.3 49 57-105 4-52 (78)
58 TIGR02230 ATPase_gene1 F0F1-AT 32.9 1.9E+02 0.0042 22.3 6.0 60 423-482 34-94 (100)
59 KOG4349|consensus 32.6 2.6E+02 0.0056 22.3 10.6 88 43-131 44-132 (143)
60 PF10329 DUF2417: Region of un 29.2 4.4E+02 0.0096 24.0 11.4 14 134-147 142-155 (232)
61 PF14362 DUF4407: Domain of un 29.2 5E+02 0.011 24.6 10.3 20 132-151 52-71 (301)
62 PF05915 DUF872: Eukaryotic pr 28.5 3E+02 0.0066 21.9 7.4 28 43-70 40-67 (115)
63 PF14494 DUF4436: Domain of un 28.3 2.7E+02 0.0058 25.8 7.3 18 166-183 200-217 (256)
64 PF01102 Glycophorin_A: Glycop 27.7 67 0.0015 25.8 2.9 19 60-78 76-94 (122)
65 PRK10929 putative mechanosensi 27.0 1E+03 0.022 27.5 15.5 18 212-229 633-650 (1109)
66 TIGR00927 2A1904 K+-dependent 26.4 3.7E+02 0.0081 30.1 8.8 28 43-70 929-956 (1096)
67 COG2322 Predicted membrane pro 25.7 2.6E+02 0.0057 23.8 6.0 36 417-452 68-103 (177)
68 PF02532 PsbI: Photosystem II 25.1 1E+02 0.0022 18.5 2.6 17 48-64 10-26 (36)
69 COG4736 CcoQ Cbb3-type cytochr 24.1 2.5E+02 0.0054 19.4 4.7 31 213-243 10-40 (60)
70 KOG2575|consensus 23.4 78 0.0017 31.1 3.0 27 423-449 253-279 (510)
71 PF10325 7TM_GPCR_Srz: Serpent 23.1 6E+02 0.013 23.4 17.4 111 123-238 86-198 (267)
72 PRK03557 zinc transporter ZitB 22.7 6.8E+02 0.015 23.9 11.4 43 56-99 127-170 (312)
73 COG4606 CeuB ABC-type enteroch 20.1 7.3E+02 0.016 23.3 8.6 126 54-180 111-238 (321)
74 COG1862 YajC Preprotein transl 20.1 1.9E+02 0.0041 22.2 3.9 28 216-243 13-40 (97)
No 1
>KOG4220|consensus
Probab=100.00 E-value=2.5e-52 Score=381.33 Aligned_cols=456 Identities=27% Similarity=0.418 Sum_probs=277.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhH
Q psy461 40 SVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIIC 119 (507)
Q Consensus 40 ~~~~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C 119 (507)
....++-++.+++..+++++.++||++|++.+.-.++|++..|+||++||++||++|++.+|++..+.+.+.|.+|...|
T Consensus 24 ~~~~~q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~C 103 (503)
T KOG4220|consen 24 RYETWQVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVC 103 (503)
T ss_pred CccceEEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHH
Confidence 34456667788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCc-cccCCCcc
Q psy461 120 KIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPE-VFEADTPC 198 (507)
Q Consensus 120 ~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~-~~~~~~~c 198 (507)
.++..+.++...+|++.++.|++|||+.|.+|+.|+.+.|++++..+|++.|++++++..|.++.|....+ .....+.|
T Consensus 104 dlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC 183 (503)
T KOG4220|consen 104 DLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGEC 183 (503)
T ss_pred HHHHHHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999998887765433 34556678
Q ss_pred ccCCc--chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhcccccccccccccCCCCCCCccccCCC
Q psy461 199 QLTQQ--RGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPESISSENDT 276 (507)
Q Consensus 199 ~~~~~--~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (507)
..++. ........+..|.+|..+|+++|++|++..+++.+..........+.........++..........++..+.
T Consensus 184 ~iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~~p~~~~ 263 (503)
T KOG4220|consen 184 YIQFLSNPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRSSPSEEG 263 (503)
T ss_pred EEEeecCceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccCCCCCCCcccc
Confidence 77653 3345566778899999999999999999999988876655322211111111111100000000000010100
Q ss_pred CCCccccccccccchhhcccCCCCCCCccccccccccCCc-cccccccccchhc--cccCC---CCccceeecCCCcccc
Q psy461 277 KSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSM-TDIQDLSSSSNKI--AARND---NMGEFVHINNNETTFT 350 (507)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~ 350 (507)
.+.+..+.... ..+....+ .....+.....+.+ ....+.....-++ .+..+ ....+.+.+...++..
T Consensus 264 ~~~~~~~~~~~-~~k~ps~~------~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D~~~ 336 (503)
T KOG4220|consen 264 KREPLTNGCIS-NSKAPSLT------PTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVDEEG 336 (503)
T ss_pred ccccCCCCccc-cccCcccC------CccCCCCccccccccccccccccCCccccccccccccceeccCCCCcCCCCccc
Confidence 11111111000 00000000 00000000000000 0000000000000 00000 0000000000001000
Q ss_pred c-cccccccccccccCCCCCCCCCCCCcCCCCCCCCCccccccccccchhhccCCCh----hhHHHHHHHHHhhhhHHHH
Q psy461 351 N-KTISDDISLASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVKSEVSIVVIQAPST----QVVKQFIEEKQKISLSKER 425 (507)
Q Consensus 351 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 425 (507)
. ...+.......+.+++..+....-......+.+...+..+..+ .++ ..+.+. ...+.+.+++++-...+|+
T Consensus 337 ~~~~i~i~~~~~~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~-~~~--~~~~~~kkf~~~~r~q~~k~k~~~~~rEr 413 (503)
T KOG4220|consen 337 LNTLIQIPTDQMLPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGP-VAR--KTGLDYKKFAKRARSQSRKKKKMSLVRER 413 (503)
T ss_pred cccccccccccCCCCCCcccccccccccccCCccCccccccccCc-ccc--ccchhhhhhhhhhhhhhhhhcchhhHHHH
Confidence 0 0011111111011111111000000000000000000000100 000 000000 1111122222233348999
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHhhccccCCccCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHHHhhhhcc
Q psy461 426 RAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLNKVSLSR 505 (507)
Q Consensus 426 r~~k~l~~i~~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~~~~~~~~ 505 (507)
|++|++.+|.+.|++||.||.|+.++..++.++ ....+..+..||.|+||.+||+.|.+.|..||+.+++++.|...++
T Consensus 414 KAAkTLsAILlAFIiTWtPYNImVlv~tFC~~C-iP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~Cr~~~~ 492 (503)
T KOG4220|consen 414 KAAKTLSAILLAFILTWTPYNIMVLVNTFCKNC-IPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLLCRWKKR 492 (503)
T ss_pred HHHHHHHHHHHHHHHHcccceeeeehHhhcccc-cchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhheeeeccc
Confidence 999999999999999999999999999998865 5677888999999999999999999999999999999997766554
Q ss_pred c
Q psy461 506 E 506 (507)
Q Consensus 506 ~ 506 (507)
+
T Consensus 493 ~ 493 (503)
T KOG4220|consen 493 R 493 (503)
T ss_pred c
Confidence 3
No 2
>KOG4219|consensus
Probab=100.00 E-value=1.8e-46 Score=344.64 Aligned_cols=292 Identities=25% Similarity=0.506 Sum_probs=248.5
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccch
Q psy461 38 EYSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGII 117 (507)
Q Consensus 38 ~~~~~~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~ 117 (507)
.+.+|.++.++.+++|.++.+++++||+++++++..+|++|+.+|+||+|||++|++.+++..++.....+...|.+|..
T Consensus 27 ~f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f 106 (423)
T KOG4219|consen 27 LFVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSF 106 (423)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCcccc---C
Q psy461 118 ICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFE---A 194 (507)
Q Consensus 118 ~C~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~---~ 194 (507)
+|++..|+..+...+|++++++||+|||.||.+|++.+ .+++.++++++++|++|++.++|..++......+.. .
T Consensus 107 ~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~ 184 (423)
T KOG4219|consen 107 YCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGES 184 (423)
T ss_pred eeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcc
Confidence 99999999999999999999999999999999998854 899999999999999999999998887664322211 1
Q ss_pred CCccccC---------C-c---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhcccccccccccc
Q psy461 195 DTPCQLT---------Q-Q---RGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEV 261 (507)
Q Consensus 195 ~~~c~~~---------~-~---~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (507)
...|... . . ..|..+..++.+++|++++.++|..|.+.+|..+....+.
T Consensus 185 ~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~------------------ 246 (423)
T KOG4219|consen 185 RVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQ------------------ 246 (423)
T ss_pred eEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchh------------------
Confidence 1123221 1 1 2267778888999999999999999999998864211111
Q ss_pred cCCCCCCCccccCCCCCCccccccccccchhhcccCCCCCCCccccccccccCCccccccccccchhccccCCCCcccee
Q psy461 262 QSPLEPESISSENDTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARNDNMGEFVH 341 (507)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (507)
T Consensus 247 -------------------------------------------------------------------------------- 246 (423)
T KOG4219|consen 247 -------------------------------------------------------------------------------- 246 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCccccccccccccccccccCCCCCCCCCCCCcCCCCCCCCCccccccccccchhhccCCChhhHHHHHHHHHhhhh
Q psy461 342 INNNETTFTNKTISDDISLASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISL 421 (507)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (507)
. ++....
T Consensus 247 ------------------------------------------------------------------------d-~~~~~~ 253 (423)
T KOG4219|consen 247 ------------------------------------------------------------------------D-RKHEQL 253 (423)
T ss_pred ------------------------------------------------------------------------c-hhhHHH
Confidence 0 122345
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHhhccccCC---ccCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHH
Q psy461 422 SKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDT---CCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLL 498 (507)
Q Consensus 422 ~~~~r~~k~l~~i~~~f~i~w~P~~i~~~~~~~~~~---~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~ 498 (507)
+..+|+.||++++++.|.+||+|+.+..++....++ ......++....||+..|+|.||+||+++|++||.++++.|
T Consensus 254 kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~f 333 (423)
T KOG4219|consen 254 KAKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAF 333 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhh
Confidence 677889999999999999999999999888765433 34456778888999999999999999999999999999999
Q ss_pred Hhhh
Q psy461 499 NKVS 502 (507)
Q Consensus 499 ~~~~ 502 (507)
+++-
T Consensus 334 r~cp 337 (423)
T KOG4219|consen 334 RWCP 337 (423)
T ss_pred heee
Confidence 8873
No 3
>PHA03234 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=1.2e-41 Score=327.74 Aligned_cols=274 Identities=16% Similarity=0.198 Sum_probs=208.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccch
Q psy461 40 SVPEWEAIITMICLSTLIIGTIIGNIMVVISVF--TYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGII 117 (507)
Q Consensus 40 ~~~~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~--~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~ 117 (507)
+..+...++..++|.+++++|++||+++++++. +++++|+++|+|++|||++|+++++ ..|..+... .+.|.+|+.
T Consensus 26 ~~~~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~~-~~~w~fG~~ 103 (338)
T PHA03234 26 PTLKKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLNR-EALFNFNQA 103 (338)
T ss_pred hHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hCCccCchh
Confidence 344557788999999999999999999999554 5566789999999999999999976 455555433 457999999
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCc
Q psy461 118 ICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTP 197 (507)
Q Consensus 118 ~C~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~ 197 (507)
.|++..++..+...+|++++++||+|||++|++|.+++. +.++....++++|+++++.++|.++....... ......
T Consensus 104 lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~-~~~~~~ 180 (338)
T PHA03234 104 FCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGK-KGNYGK 180 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeec-CCCCCc
Confidence 999999999999999999999999999999999987642 33444556667799999999998765432211 111234
Q ss_pred cccCCc--chhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhcccccccccccccCCCCCCC
Q psy461 198 CQLTQQ--RGYVVY------SSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPES 269 (507)
Q Consensus 198 c~~~~~--~~~~~~------~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (507)
|...+. ..+..+ ..++.+++|+++|++||.+|.+++++..
T Consensus 181 C~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~-------------------------------- 228 (338)
T PHA03234 181 CNIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALT-------------------------------- 228 (338)
T ss_pred CcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------------------------
Confidence 654432 122211 2233468999999999999988875421
Q ss_pred ccccCCCCCCccccccccccchhhcccCCCCCCCccccccccccCCccccccccccchhccccCCCCccceeecCCCccc
Q psy461 270 ISSENDTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARNDNMGEFVHINNNETTF 349 (507)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (507)
T Consensus 229 -------------------------------------------------------------------------------- 228 (338)
T PHA03234 229 -------------------------------------------------------------------------------- 228 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccCCCCCCCCCCCCcCCCCCCCCCccccccccccchhhccCCChhhHHHHHHHHHhhhhHHHHHHHH
Q psy461 350 TNKTISDDISLASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAAR 429 (507)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k 429 (507)
.++++|++|
T Consensus 229 -----------------------------------------------------------------------~~~~~k~~k 237 (338)
T PHA03234 229 -----------------------------------------------------------------------EKKHKKTLF 237 (338)
T ss_pred -----------------------------------------------------------------------hhhhhhhhh
Confidence 023478999
Q ss_pred HHHHHHHHHHhhchhHHHHHhhcccc-----CCcc---CchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHHHhh
Q psy461 430 TLGIIMGVFVFCWLPFFLMYVSLPFC-----DTCC---MSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLNKV 501 (507)
Q Consensus 430 ~l~~i~~~f~i~w~P~~i~~~~~~~~-----~~~~---~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~~~~ 501 (507)
++++++++|++||+|+.++.++.... .++. .....+.++.+|+++|||+||+||++.+++||+++++++++.
T Consensus 238 ~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~~~ 317 (338)
T PHA03234 238 FIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQDF 317 (338)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999987654321 1111 123446678899999999999999999999999999888654
No 4
>PHA03235 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=1.8e-39 Score=319.33 Aligned_cols=273 Identities=18% Similarity=0.271 Sum_probs=206.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHH
Q psy461 43 EWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPL--RIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICK 120 (507)
Q Consensus 43 ~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~l--r~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~ 120 (507)
....++..+++.+++++|++||+++++++.+.++. ++.+++|++|||++|++. ++.+|+.+... ...|..++..|+
T Consensus 29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~-~~~~~~g~~~Ck 106 (409)
T PHA03235 29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLSN-QGLLSGSVAGCK 106 (409)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHhc-CccccCCCCeeh
Confidence 44667899999999999999999999886543332 356789999999999987 56788776431 122334568999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCC--Ccc---ccCC
Q psy461 121 IWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDW--PEV---FEAD 195 (507)
Q Consensus 121 ~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~--~~~---~~~~ 195 (507)
+..++..++..+|++++++||+|||++|++|.++ ...+++++..+++++|++++++++|++++.... ... ....
T Consensus 107 ~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~-~~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~ 185 (409)
T PHA03235 107 FASLLYYASCTVGFATVALIAADRYRVIHQRTRA-RSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGY 185 (409)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhc-cCcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCc
Confidence 9999999999999999999999999999999765 345688899999999999999999976543211 110 1123
Q ss_pred CccccCCcc--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhcccccccccccccCCCCC
Q psy461 196 TPCQLTQQR--------GYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLEP 267 (507)
Q Consensus 196 ~~c~~~~~~--------~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (507)
..|...+.. .|..+..++.|++|+++|+++|.+|++.++++.+
T Consensus 186 ~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~----------------------------- 236 (409)
T PHA03235 186 ETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY----------------------------- 236 (409)
T ss_pred ceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------------------------
Confidence 346442211 1333455567899999999999999998876421
Q ss_pred CCccccCCCCCCccccccccccchhhcccCCCCCCCccccccccccCCccccccccccchhccccCCCCccceeecCCCc
Q psy461 268 ESISSENDTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARNDNMGEFVHINNNET 347 (507)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (507)
T Consensus 237 -------------------------------------------------------------------------------- 236 (409)
T PHA03235 237 -------------------------------------------------------------------------------- 236 (409)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccccCCCCCCCCCCCCcCCCCCCCCCccccccccccchhhccCCChhhHHHHHHHHHhhhhHHHHHH
Q psy461 348 TFTNKTISDDISLASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRA 427 (507)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 427 (507)
++++|+
T Consensus 237 --------------------------------------------------------------------------~~~~k~ 242 (409)
T PHA03235 237 --------------------------------------------------------------------------KKRSRT 242 (409)
T ss_pred --------------------------------------------------------------------------hcchhh
Confidence 112466
Q ss_pred HHHHHHHHHHHHhhchhHHHHHhhccccC-----Cc---cCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHHH
Q psy461 428 ARTLGIIMGVFVFCWLPFFLMYVSLPFCD-----TC---CMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLN 499 (507)
Q Consensus 428 ~k~l~~i~~~f~i~w~P~~i~~~~~~~~~-----~~---~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~~ 499 (507)
.+++++++++|++||+|+.++.++..+.. +. .....+..++.+++++|+++||+||++++++||+++++.++
T Consensus 243 ~~~v~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~ 322 (409)
T PHA03235 243 LTFVCILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFR 322 (409)
T ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHh
Confidence 78899999999999999999887654321 11 11234566788899999999999999999999999999987
Q ss_pred hh
Q psy461 500 KV 501 (507)
Q Consensus 500 ~~ 501 (507)
+.
T Consensus 323 ~~ 324 (409)
T PHA03235 323 GE 324 (409)
T ss_pred hh
Confidence 64
No 5
>PHA02834 chemokine receptor-like protein; Provisional
Probab=100.00 E-value=3e-39 Score=311.48 Aligned_cols=186 Identities=20% Similarity=0.386 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHHHHH
Q psy461 44 WEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWL 123 (507)
Q Consensus 44 ~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~ 123 (507)
....+..+++++++++|++||+++++++.+++. +++.|+|++|||++|++. ++.+|+.+.... ++|.+|+..|++..
T Consensus 26 ~~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~-~~w~~g~~~C~~~~ 102 (323)
T PHA02834 26 DVNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHNDL-NEWIFGEFMCKLVL 102 (323)
T ss_pred chhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHHc-CCcCCcchHHHhHH
Confidence 345677899999999999999999998877655 457899999999999987 667888765544 57999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCccccCC-
Q psy461 124 TSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQLTQ- 202 (507)
Q Consensus 124 ~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~- 202 (507)
++......+|++++++||+|||++|++|++++. .+.+++..+++++|+++++.++|+++++.... ......|....
T Consensus 103 ~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~--~~~~~~C~~~~~ 179 (323)
T PHA02834 103 GVYFVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVLYYVDN--TDNLKQCIFNDY 179 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHHHHhcc--CCCceEEeccCC
Confidence 999999999999999999999999999998654 35567778888999999999999876543221 11223464321
Q ss_pred --cc-hh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 203 --QR-GY---VVYSSLGSFFIPLAIMTLVYVEIFLATKK 235 (507)
Q Consensus 203 --~~-~~---~~~~~~~~~~ip~~vi~~~y~~I~~~l~~ 235 (507)
.. .+ .....++.+++|+++++++|.+|++.+++
T Consensus 180 ~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~ 218 (323)
T PHA02834 180 HENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKN 218 (323)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 11 11234667899999999999999988765
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=100.00 E-value=2.3e-37 Score=305.95 Aligned_cols=274 Identities=22% Similarity=0.460 Sum_probs=215.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHHHH
Q psy461 43 EWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIW 122 (507)
Q Consensus 43 ~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~ 122 (507)
+.+..+..+++.+++++|++||+++++++.+ |++|+.++++++|||++|++. ++..|+++... .++|.+++..|++.
T Consensus 95 ~~~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~-~l~lPf~i~~~-~~~W~fg~~~Ck~~ 171 (417)
T PHA02638 95 PSISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIF-VIDFPFIIYNE-FDQWIFGDFMCKVI 171 (417)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHH-HHHHHHHHHHH-hccccccccchhhH
Confidence 3356777888999999999999999977654 788999999999999999988 45788877655 46799999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCC------cc--ccC
Q psy461 123 LTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWP------EV--FEA 194 (507)
Q Consensus 123 ~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~------~~--~~~ 194 (507)
.++......++++.+++|++|||++|++|.++++..+++.+..+++++|++++++++|++++.+... .. ...
T Consensus 172 ~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~ 251 (417)
T PHA02638 172 SASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETIS 251 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCcc
Confidence 9999999999999999999999999999999877777788888899999999999999887654321 00 011
Q ss_pred CCccccCCcc-----h-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhcccccccccccccCC
Q psy461 195 DTPCQLTQQR-----G-----YVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSP 264 (507)
Q Consensus 195 ~~~c~~~~~~-----~-----~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (507)
...|...+.. . +.....++.+++|++++++||.+|++++++..+
T Consensus 252 ~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~-------------------------- 305 (417)
T PHA02638 252 NYQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKK-------------------------- 305 (417)
T ss_pred CCeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------------------
Confidence 2356432211 1 112234566799999999999999998865321
Q ss_pred CCCCCccccCCCCCCccccccccccchhhcccCCCCCCCccccccccccCCccccccccccchhccccCCCCccceeecC
Q psy461 265 LEPESISSENDTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARNDNMGEFVHINN 344 (507)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (507)
T Consensus 306 -------------------------------------------------------------------------------- 305 (417)
T PHA02638 306 -------------------------------------------------------------------------------- 305 (417)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccccccccccCCCCCCCCCCCCcCCCCCCCCCccccccccccchhhccCCChhhHHHHHHHHHhhhhHHH
Q psy461 345 NETTFTNKTISDDISLASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKE 424 (507)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (507)
+++
T Consensus 306 -----------------------------------------------------------------------------~~k 308 (417)
T PHA02638 306 -----------------------------------------------------------------------------SKK 308 (417)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 123
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHhhccccC-----------Ccc--CchhHHHHHHHHHhhhcchhhHHHHhhcHHHH
Q psy461 425 RRAARTLGIIMGVFVFCWLPFFLMYVSLPFCD-----------TCC--MSDRLINFITWLGYINSGINPIIYTIFNLDFR 491 (507)
Q Consensus 425 ~r~~k~l~~i~~~f~i~w~P~~i~~~~~~~~~-----------~~~--~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR 491 (507)
+|++|++++++++|++||+|+.++.++..+.. .+. .......++..++++|+|+||+||++.+++||
T Consensus 309 ~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR 388 (417)
T PHA02638 309 TKSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENFR 388 (417)
T ss_pred chhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHH
Confidence 56679999999999999999999887664321 111 12234567788999999999999999999999
Q ss_pred HHHHHHHHhhh
Q psy461 492 KSFKRLLNKVS 502 (507)
Q Consensus 492 ~~~~~l~~~~~ 502 (507)
+++++++++..
T Consensus 389 ~~l~~~~~~~~ 399 (417)
T PHA02638 389 MHLLMIFRNIF 399 (417)
T ss_pred HHHHHHHHHhc
Confidence 99999987664
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=100.00 E-value=4.7e-36 Score=292.32 Aligned_cols=276 Identities=23% Similarity=0.425 Sum_probs=218.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHHHH
Q psy461 43 EWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIW 122 (507)
Q Consensus 43 ~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~ 122 (507)
+....+..+++.+++++|++||+++++++.++ ++|++.++|+.+||++|++.++ ..|..+.......|.+++..|++.
T Consensus 37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~ 114 (335)
T PHA03087 37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIV 114 (335)
T ss_pred cchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHH
Confidence 44567788899999999999999999998888 8899999999999999998865 567666566667899999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCccccCC
Q psy461 123 LTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQLTQ 202 (507)
Q Consensus 123 ~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 202 (507)
.++......+|++++++||+|||++|++|++|+...+.+++..+++++|+++++.++|++........ .....|...+
T Consensus 115 ~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~--~~~~~C~~~~ 192 (335)
T PHA03087 115 SGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKD--HETLICCMFY 192 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeecc--CCCceEEecC
Confidence 99999999999999999999999999999999998999999999999999999999988776543221 2223343332
Q ss_pred c---chhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhcccccccccccccCCCCCCCccccCC
Q psy461 203 Q---RGYV----VYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPESISSEND 275 (507)
Q Consensus 203 ~---~~~~----~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (507)
. ..+. ....++.+++|+++++++|.+|++.++++.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~------------------------------------- 235 (335)
T PHA03087 193 NNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINK------------------------------------- 235 (335)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------------------------------
Confidence 1 1111 1234456799999999999999877655321
Q ss_pred CCCCccccccccccchhhcccCCCCCCCccccccccccCCccccccccccchhccccCCCCccceeecCCCccccccccc
Q psy461 276 TKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARNDNMGEFVHINNNETTFTNKTIS 355 (507)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (507)
T Consensus 236 -------------------------------------------------------------------------------- 235 (335)
T PHA03087 236 -------------------------------------------------------------------------------- 235 (335)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCCCCCCCCCCcCCCCCCCCCccccccccccchhhccCCChhhHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy461 356 DDISLASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAARTLGIIM 435 (507)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~l~~i~ 435 (507)
.++++|++|++++++
T Consensus 236 -----------------------------------------------------------------~~~~~k~~k~l~~iv 250 (335)
T PHA03087 236 -----------------------------------------------------------------SKKNKKAIKLVLIIV 250 (335)
T ss_pred -----------------------------------------------------------------chhcchHHHhHHHHH
Confidence 123467899999999
Q ss_pred HHHHhhchhHHHHHhhcccc-----CCc---cCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHHHhhhhc
Q psy461 436 GVFVFCWLPFFLMYVSLPFC-----DTC---CMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLNKVSLS 504 (507)
Q Consensus 436 ~~f~i~w~P~~i~~~~~~~~-----~~~---~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~~~~~~~ 504 (507)
++|++||+|+.+..++.... ... ........+..+++.+|+++||+||++++++||++++++++....+
T Consensus 251 ~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~~~~~ 327 (335)
T PHA03087 251 ILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLMFTS 327 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHHHhhc
Confidence 99999999998876554221 111 1123344567789999999999999999999999999999766544
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=100.00 E-value=8.8e-34 Score=265.77 Aligned_cols=252 Identities=34% Similarity=0.613 Sum_probs=214.6
Q ss_pred HHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHhHHHHHHHHHHHHHHHH
Q psy461 63 GNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIAL 142 (507)
Q Consensus 63 gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~Iai 142 (507)
||+++++++.++|++|++.++|+++||++|++.++...|..+.....+.|..+...|++..++..++..++.+++++|++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999999988888877889999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCccccCCcc----hhhhHHHHHHHHHH
Q psy461 143 DRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQLTQQR----GYVVYSSLGSFFIP 218 (507)
Q Consensus 143 dRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~----~~~~~~~~~~~~ip 218 (507)
|||++|++|++|++..+++++..+++++|++++++++|+.++.+...........|...... .+..+..++.+++|
T Consensus 81 dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~p 160 (257)
T PF00001_consen 81 DRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFIYFFIVFFILP 160 (257)
T ss_dssp HHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHHHHHHHHTHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999987755433322224568776543 35667777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchhcccccccccccccCCCCCCCccccCCCCCCccccccccccchhhcccCC
Q psy461 219 LAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPESISSENDTKSGKHKNKKRKKTKKKNVQKNN 298 (507)
Q Consensus 219 ~~vi~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (507)
+++++++|++|++.++++.++.....
T Consensus 161 ~~~~~~~~~~i~~~~~~~~~~~~~~~------------------------------------------------------ 186 (257)
T PF00001_consen 161 LIIILICYIRILRKLRRQRKRIKSQS------------------------------------------------------ 186 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTCCHT------------------------------------------------------
T ss_pred eeeeeeeccccccccccccccccccc------------------------------------------------------
Confidence 99999999999999999877543320
Q ss_pred CCCCCccccccccccCCccccccccccchhccccCCCCccceeecCCCccccccccccccccccccCCCCCCCCCCCCcC
Q psy461 299 NNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARNDNMGEFVHINNNETTFTNKTISDDISLASIKSDKKPNNGNGCHVK 378 (507)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (507)
T Consensus 187 -------------------------------------------------------------------------------- 186 (257)
T PF00001_consen 187 -------------------------------------------------------------------------------- 186 (257)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccccccccccchhhccCCChhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhchhHHHHHhhccccCCc
Q psy461 379 TPVPHELNLKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTC 458 (507)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~l~~i~~~f~i~w~P~~i~~~~~~~~~~~ 458 (507)
.+..+++.++++|+++++++++++|++||+|+.+..++....+..
T Consensus 187 -----------------------------------~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~ 231 (257)
T PF00001_consen 187 -----------------------------------SSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSS 231 (257)
T ss_dssp -----------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTS
T ss_pred -----------------------------------ccccccccccccccccccccccccccccCCceeHHHHHHHHcCcc
Confidence 012344567889999999999999999999999998887776554
Q ss_pred c-CchhHHHHHHHHHhhhcchhhHHH
Q psy461 459 C-MSDRLINFITWLGYINSGINPIIY 483 (507)
Q Consensus 459 ~-~~~~~~~~~~~l~~~ns~~NPiIY 483 (507)
. .......+..++.++|+++||+||
T Consensus 232 ~~~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 232 SLISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHhhCcEEC
Confidence 2 467777888999999999999999
No 9
>KOG2087|consensus
Probab=99.93 E-value=4.2e-27 Score=214.96 Aligned_cols=180 Identities=23% Similarity=0.444 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------C-cccccchhHHHH
Q psy461 51 ICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLS-------G-RWIFGIIICKIW 122 (507)
Q Consensus 51 ~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~-------~-~~~~~~~~C~~~ 122 (507)
+.-.++.+++++||++|+......+...+...+++.+||.+|+++++-...+....... . .|. +...|++.
T Consensus 29 i~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~-tg~gC~~a 107 (363)
T KOG2087|consen 29 ISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQ-TGLGCPVA 107 (363)
T ss_pred ehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhh-hcCCCchH
Confidence 34456677889999999999888887778999999999999999988666665554422 1 244 45799999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCcccc--
Q psy461 123 LTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQL-- 200 (507)
Q Consensus 123 ~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~-- 200 (507)
+|+..+....|++.++.+++||++.|++|++-.+....+....++++.|+.+++.++.|+++...|.. ...|-.
T Consensus 108 GflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~~----~~vClPL~ 183 (363)
T KOG2087|consen 108 GFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSYGA----SSVCLPLH 183 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCCcc----cceeeecc
Confidence 99999999999999999999999999999997777666668999999999999999999998665433 344532
Q ss_pred ---CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 201 ---TQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKK 235 (507)
Q Consensus 201 ---~~~~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~ 235 (507)
....+|+...++.+-.+.+++|.++|+++++.+++
T Consensus 184 ~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~ 221 (363)
T KOG2087|consen 184 IEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRK 221 (363)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeec
Confidence 12222566666777799999999999999987655
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.90 E-value=4.6e-23 Score=191.25 Aligned_cols=252 Identities=21% Similarity=0.295 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHhHHHHHHHHHHH
Q psy461 58 IGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNL 137 (507)
Q Consensus 58 ~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l 137 (507)
++|++||+.+++++.++|++|++.++++..+|++|++.++..+|..+..+. ........|-...+...++..+....+
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~~--~~~i~~~~Cf~~~~~~~f~~~~qs~~~ 79 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLFR--DHQITRSECFWQIFFYIFFQCAQSVIM 79 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHHh--heeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999998887877774442 234456689999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCccccCCcc---hhhhHHHHHH
Q psy461 138 CAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQLTQQR---GYVVYSSLGS 214 (507)
Q Consensus 138 ~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~---~~~~~~~~~~ 214 (507)
++|++||++||+.|.+|+...+.+..........+.+....+..++..++ .....|...... .+..+ ...
T Consensus 80 l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~~~~~~~~-----~~~~~C~pp~a~~~~~~~~~-~~~- 152 (257)
T PF10320_consen 80 LAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTVIGFLYRDD-----ETIVICNPPLAFHGTASQIW-SYS- 152 (257)
T ss_pred HHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHhheeEecCC-----cccccCCCccccCccHHHHH-HHH-
Confidence 99999999999999999999988866666666666665555444443332 133456554322 12221 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhcccccccccccccCCCCCCCccccCCCCCCccccccccccchhhc
Q psy461 215 FFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPESISSENDTKSGKHKNKKRKKTKKKNV 294 (507)
Q Consensus 215 ~~ip~~vi~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (507)
.++.-+++++.|+..+..++++.++
T Consensus 153 ~~~inv~tvivY~i~~~~~~~k~~~------------------------------------------------------- 177 (257)
T PF10320_consen 153 NIIINVITVIVYIITIIIFKRKSRS------------------------------------------------------- 177 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-------------------------------------------------------
Confidence 2233344556677777666654332
Q ss_pred ccCCCCCCCccccccccccCCccccccccccchhccccCCCCccceeecCCCccccccccccccccccccCCCCCCCCCC
Q psy461 295 QKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARNDNMGEFVHINNNETTFTNKTISDDISLASIKSDKKPNNGNG 374 (507)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (507)
T Consensus 178 -------------------------------------------------------------------------------- 177 (257)
T PF10320_consen 178 -------------------------------------------------------------------------------- 177 (257)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCCCCCCCccccccccccchhhccCCChhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhchhHHHHHhhccc
Q psy461 375 CHVKTPVPHELNLKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPF 454 (507)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~l~~i~~~f~i~w~P~~i~~~~~~~ 454 (507)
....++|+.|.+.+.++.|+++|.-..+...+...
T Consensus 178 ---------------------------------------------~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~ 212 (257)
T PF10320_consen 178 ---------------------------------------------NSSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLA 212 (257)
T ss_pred ---------------------------------------------cchhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHH
Confidence 12446888999999999999999987776655443
Q ss_pred c-CCccCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHH
Q psy461 455 C-DTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLL 498 (507)
Q Consensus 455 ~-~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~ 498 (507)
. .+......+.....++..++.+.|.+||.++|+|||++++++|
T Consensus 213 ~~~~~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 213 LGLDGETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 2 2333334456667789999999999999999999999999875
No 11
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.87 E-value=1.1e-20 Score=182.56 Aligned_cols=273 Identities=20% Similarity=0.245 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-----cc----ccchhHHHHHH
Q psy461 55 TLIIGTIIGNIMVVISVFTYKPLRI-VQNFFIVSLAVADLTVAIFVLPLSLIYYLSGR-----WI----FGIIICKIWLT 124 (507)
Q Consensus 55 ii~~~gi~gN~lvi~~i~~~~~lr~-~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~-----~~----~~~~~C~~~~~ 124 (507)
+++++|+++|++-++++.| |.+|+ +.|.+++++|++|++..+..++..+.....+. +. .......+...
T Consensus 5 ~~~~~g~~~N~~h~~VLtr-k~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~ 83 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIVLTR-KSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMES 83 (318)
T ss_pred EEeHHHHHHHHHHhhhcCC-hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH
Confidence 4568899999988888855 56676 89999999999999998888887775554321 11 11233445667
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcccccc--cccccchhhhhHHHHHHHHHHHHhhccccccCCCcc--ccCCCcccc
Q psy461 125 SDVLCCTASILNLCAIALDRYWAITDPLVYA--QQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEV--FEADTPCQL 200 (507)
Q Consensus 125 ~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~--~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~--~~~~~~c~~ 200 (507)
+...+...|.|..++||+.|+++|.+|...+ ...+++.+..++.+++++++++..+.++........ ......|..
T Consensus 84 l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~ 163 (318)
T PF10324_consen 84 LSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSG 163 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceee
Confidence 8888899999999999999999999998653 456778888888999999999999877655433111 111223431
Q ss_pred -C-------C----cch-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhcccccccc
Q psy461 201 -T-------Q----QRG-----------YVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNV 257 (507)
Q Consensus 201 -~-------~----~~~-----------~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (507)
+ + ... +.....++.-++|.++..++.+.+++.+|+.++++++..
T Consensus 164 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~------------- 230 (318)
T PF10324_consen 164 FPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLS------------- 230 (318)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhccc-------------
Confidence 0 0 000 111122334689999999999999999999888766651
Q ss_pred cccccCCCCCCCccccCCCCCCccccccccccchhhcccCCCCCCCccccccccccCCccccccccccchhccccCCCCc
Q psy461 258 QKEVQSPLEPESISSENDTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARNDNMG 337 (507)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (507)
T Consensus 231 -------------------------------------------------------------------------------- 230 (318)
T PF10324_consen 231 -------------------------------------------------------------------------------- 230 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeecCCCccccccccccccccccccCCCCCCCCCCCCcCCCCCCCCCccccccccccchhhccCCChhhHHHHHHHHH
Q psy461 338 EFVHINNNETTFTNKTISDDISLASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQ 417 (507)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (507)
T Consensus 231 -------------------------------------------------------------------------------- 230 (318)
T PF10324_consen 231 -------------------------------------------------------------------------------- 230 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhchhHHHHHhhccccCCc----cCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHH
Q psy461 418 KISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTC----CMSDRLINFITWLGYINSGINPIIYTIFNLDFRKS 493 (507)
Q Consensus 418 ~~~~~~~~r~~k~l~~i~~~f~i~w~P~~i~~~~~~~~~~~----~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~ 493 (507)
+.+.+++.+.+++++++++.|+++-+|..+..++.....+. ........+...+..+|+..|++||.+++.+||++
T Consensus 231 ~~~~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t 310 (318)
T PF10324_consen 231 SSKSKKSDRTTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKT 310 (318)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHH
Confidence 00023557889999999999999999999999887754332 22334555777899999999999999999999999
Q ss_pred HHHHHHhh
Q psy461 494 FKRLLNKV 501 (507)
Q Consensus 494 ~~~l~~~~ 501 (507)
++++|+|+
T Consensus 311 ~~~~f~~k 318 (318)
T PF10324_consen 311 VKKLFGCK 318 (318)
T ss_pred HHHHhccC
Confidence 99999874
No 12
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.83 E-value=8.8e-19 Score=165.15 Aligned_cols=181 Identities=24% Similarity=0.315 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHH-HHHHHhHHHHHHH
Q psy461 55 TLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICK-IWLTSDVLCCTAS 133 (507)
Q Consensus 55 ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~-~~~~~~~~~~~~S 133 (507)
+++++|++.|.++++.+.+.+++|++.+++..+.|++|.+.++.......+..+.+.......... +.+.....+...+
T Consensus 2 ~~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~ 81 (274)
T PF10328_consen 2 LISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIG 81 (274)
T ss_pred eeeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999998866555555555444333443344 4478888888899
Q ss_pred HHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccc--------cCCCccccCCcch
Q psy461 134 ILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVF--------EADTPCQLTQQRG 205 (507)
Q Consensus 134 ~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~--------~~~~~c~~~~~~~ 205 (507)
.++.++||++|++||..|.+|.+..+.+.+..+++++|++++....+..+..+....+. .+...|..
T Consensus 82 ~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~~~~~~C~~----- 156 (274)
T PF10328_consen 82 PLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSYPTDPPCGN----- 156 (274)
T ss_pred HHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeecCCCCccch-----
Confidence 99999999999999999999999999999999999999999977766655443322221 11223432
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 206 YVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDR 240 (507)
Q Consensus 206 ~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~ 240 (507)
+..+.......+-.+++.+++..++.++++.+++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~ 191 (274)
T PF10328_consen 157 YSWYFDFYKNFILVIISNILNIITFIKLRKFRKKI 191 (274)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 23333344445556677778888898888877764
No 13
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.75 E-value=1.3e-15 Score=144.46 Aligned_cols=286 Identities=15% Similarity=0.111 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHH
Q psy461 44 WEAIITMICLSTLIIGTIIGNIMVVISVFTY---KPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICK 120 (507)
Q Consensus 44 ~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~---~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~ 120 (507)
....+..++..+..++|++||++++++.... ++.-.+.+..+.+||+++++...+.....+...+.......+..++
T Consensus 4 ~~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (303)
T PF05296_consen 4 SLEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYK 83 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHH
Confidence 3456678899999999999999998887643 2223599999999999999987765555555555554455667899
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccc---cchhhhhHHHHHHHHHHHHhhccccccCCCc---ccc
Q psy461 121 IWLTSDVLCCTASILNLCAIALDRYWAITDPLVYA-QQRT---IKRVMMMIMYVWLLSALISSPPLIGWNDWPE---VFE 193 (507)
Q Consensus 121 ~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~-~~~t---~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~---~~~ 193 (507)
+..++..+....|.|..+++++--++.|+..-+.- .+.. .+-+..++.+.++++++..++....+..... ...
T Consensus 84 ~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~~~~ 163 (303)
T PF05296_consen 84 IIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINNNNTNN 163 (303)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeccccccC
Confidence 99999999999999999999999999998753211 1111 1223335566777777333332222222111 111
Q ss_pred CCCc-cccCC-cch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhcccccccccccccCCCCCCC
Q psy461 194 ADTP-CQLTQ-QRG--YVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPES 269 (507)
Q Consensus 194 ~~~~-c~~~~-~~~--~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (507)
+.+. ..... ... +......+..++|+++++++...+...++||.|+.++.....
T Consensus 164 ~~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~---------------------- 221 (303)
T PF05296_consen 164 SRNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGF---------------------- 221 (303)
T ss_pred CCcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----------------------
Confidence 1111 11111 111 222223467799999999999999999999999987661000
Q ss_pred ccccCCCCCCccccccccccchhhcccCCCCCCCccccccccccCCccccccccccchhccccCCCCccceeecCCCccc
Q psy461 270 ISSENDTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARNDNMGEFVHINNNETTF 349 (507)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (507)
T Consensus 222 -------------------------------------------------------------------------------- 221 (303)
T PF05296_consen 222 -------------------------------------------------------------------------------- 221 (303)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccCCCCCCCCCCCCcCCCCCCCCCccccccccccchhhccCCChhhHHHHHHHHHhhhhHHHHHHHH
Q psy461 350 TNKTISDDISLASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAAR 429 (507)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k 429 (507)
+.-+.+++.|++|
T Consensus 222 -------------------------------------------------------------------~~ps~~aH~~a~k 234 (303)
T PF05296_consen 222 -------------------------------------------------------------------RDPSTEAHIRAIK 234 (303)
T ss_pred -------------------------------------------------------------------CCCCcHHHHHHHH
Confidence 0112478899999
Q ss_pred HHHHHHHHHHhhchhHHHHHhhccccCCccCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHHHhhh
Q psy461 430 TLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLNKVS 502 (507)
Q Consensus 430 ~l~~i~~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~~~~~ 502 (507)
+++...+.|+++++-..+........ ....+..+...+.++++...|+|-.+.|+++|+++++++++.|
T Consensus 235 ~~~sfl~ly~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~~k 303 (303)
T PF05296_consen 235 TMISFLILYIIYFLSLILSFLSFFFP----ENSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWCLK 303 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcC
Confidence 99998888888776654432222221 2234556778899999999999999999999999999998764
No 14
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.71 E-value=5.1e-16 Score=146.06 Aligned_cols=181 Identities=15% Similarity=0.208 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHhhccCC----CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---C-cccccchhHHHHHHHhHH
Q psy461 57 IIGTIIGNIMVVISVFTYKP----LRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLS---G-RWIFGIIICKIWLTSDVL 128 (507)
Q Consensus 57 ~~~gi~gN~lvi~~i~~~~~----lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~---~-~~~~~~~~C~~~~~~~~~ 128 (507)
+++.++..++++..+.+.|+ ++++.+-++++.+++|++..+............ + ....++..-++.......
T Consensus 5 ~~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~ 84 (283)
T PF10323_consen 5 SIVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYY 84 (283)
T ss_pred EeehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHH
Confidence 34556677777777766544 468999999999999999876554444433221 1 112233446777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc-ccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCccccCCc-chh
Q psy461 129 CCTASILNLCAIALDRYWAITDPL-VYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQLTQQ-RGY 206 (507)
Q Consensus 129 ~~~~S~~~l~~IaidRy~aI~~P~-~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~-~~~ 206 (507)
+.......++++|++||.+|++|. ++.+..++.+...++++-|+.++++++|.+...+....... ...-..+.. ...
T Consensus 85 ~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~-~~~~~~d~~~~~~ 163 (283)
T PF10323_consen 85 FLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEE-NMSLFVDPEFIQR 163 (283)
T ss_pred HHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeeccc-ceeeecCHHHHHH
Confidence 888899999999999999999999 78888999999999999999999999996654443211111 111111111 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 207 VVYSSLGSFFIPLAIMTLVYVEIFLATKKRLR 238 (507)
Q Consensus 207 ~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~ 238 (507)
..........+.++..+++|+.++..+||+.|
T Consensus 164 ~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k 195 (283)
T PF10323_consen 164 NFLIAFIFVSVTCVICIVCYGIIFIFIRKRNK 195 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22233344556677888999999999998875
No 15
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.68 E-value=5.6e-14 Score=131.49 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHHHHHH
Q psy461 45 EAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWLT 124 (507)
Q Consensus 45 ~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~ 124 (507)
+.-+..++..+..+++++|-+++++.+++.|++|++.+.++.-++++|++..+..+.... .+....++..|.++++
T Consensus 5 ~~~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~----~~~~~~~s~lC~~Qaf 80 (303)
T PF05462_consen 5 QIRTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTL----SPSAGENSFLCQFQAF 80 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHh----cccCCCCCcchhhHhH
Confidence 344555667777999999999999999999999999999999999999987665433222 1223345678999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCccccCCcc
Q psy461 125 SDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQLTQQR 204 (507)
Q Consensus 125 ~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 204 (507)
+..++..++.+-.++||++=|+.+++... -.++.-+...+++|.++++.++.++... .+...+.+|......
T Consensus 81 liq~f~~as~lWt~~iA~nly~~~~~~~~----~~~k~e~~Y~l~~wGiPli~a~i~l~~~----~~g~~G~WCWI~~~~ 152 (303)
T PF05462_consen 81 LIQFFMLASFLWTLCIAFNLYLTFVKRYD----ELEKLEKYYHLVCWGIPLIPAVIPLIGN----DYGPAGNWCWIKPEW 152 (303)
T ss_pred HHHHhhHHHHHHHHHHHHHhhheeEEcCc----cHHHHHHHHHHHHHHHHHHHHHHHHHcc----CCCCCCCceeecCCC
Confidence 99999999999999999999999886522 1244556688899999999888766432 223445689887653
No 16
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.65 E-value=3.3e-14 Score=133.83 Aligned_cols=280 Identities=16% Similarity=0.097 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-ccccchhHHHH
Q psy461 44 WEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGR-WIFGIIICKIW 122 (507)
Q Consensus 44 ~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~-~~~~~~~C~~~ 122 (507)
..+.+..+.+.+.+++-.+..+.+++++.+++..|.+.+.++.-||+.|++...+.-...-...+.|. .-..+.+=.+.
T Consensus 30 ~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~G~vfC~~P~~~~i~ 109 (313)
T PF10321_consen 30 VKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIFGAVFCSYPRFIYIM 109 (313)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCccccCCchHhhhh
Confidence 35577788888888989999999999998887778899999999999999886544332222223331 11122334456
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHH--HHHHHHHHHhhccccccCCCccccCCCcccc
Q psy461 123 LTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMY--VWLLSALISSPPLIGWNDWPEVFEADTPCQL 200 (507)
Q Consensus 123 ~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~--~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~ 200 (507)
+.+...+..++......+|++|..-+..|......+..++...++.+ +|.+-..+..++..+...+....-+...-..
T Consensus 110 G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns~~~sw~fDP~i~~g 189 (313)
T PF10321_consen 110 GCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNSEYMSWFFDPMIFEG 189 (313)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCCCcceEecCccccCC
Confidence 66777778888889999999999999998766666666665444443 3333333334544433322211111111001
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhcccccccccccccCCCCCCCccccCCCCCCc
Q psy461 201 TQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPESISSENDTKSGK 280 (507)
Q Consensus 201 ~~~~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (507)
.....|........-++-.+++.++|+.+...++++.+....
T Consensus 190 ~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~~s-------------------------------------- 231 (313)
T PF10321_consen 190 KSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYSTS-------------------------------------- 231 (313)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--------------------------------------
Confidence 111123333333333555667788899998888887554311
Q ss_pred cccccccccchhhcccCCCCCCCccccccccccCCccccccccccchhccccCCCCccceeecCCCcccccccccccccc
Q psy461 281 HKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARNDNMGEFVHINNNETTFTNKTISDDISL 360 (507)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (507)
T Consensus 232 -------------------------------------------------------------------------------- 231 (313)
T PF10321_consen 232 -------------------------------------------------------------------------------- 231 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCCCCCcCCCCCCCCCccccccccccchhhccCCChhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Q psy461 361 ASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAARTLGIIMGVFVF 440 (507)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~l~~i~~~f~i 440 (507)
....+++++.....+++.+.+.+
T Consensus 232 ---------------------------------------------------------~~~~k~~~qI~iQs~iIC~f~~i 254 (313)
T PF10321_consen 232 ---------------------------------------------------------SQLSKAQRQIFIQSVIICFFHAI 254 (313)
T ss_pred ---------------------------------------------------------hhhhhhhHHHHHHHHHHHHHHHH
Confidence 11235677888888888888888
Q ss_pred hchhHHHHHhhccccCCccCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHHHhhhhcc
Q psy461 441 CWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLNKVSLSR 505 (507)
Q Consensus 441 ~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~~~~~~~~ 505 (507)
.++-|..+..+. .+.++..+......+++.++|+||..+|+..|++++++++..+.++
T Consensus 255 ~a~iyv~m~f~~-------~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~~k~~r~ 312 (313)
T PF10321_consen 255 AAVIYVYMQFFP-------PPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLGPKKIRK 312 (313)
T ss_pred HHHHHHeeeeec-------ccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHccccccC
Confidence 766554433322 3567777888999999999999999999999999999998555443
No 17
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=99.26 E-value=3.2e-09 Score=100.91 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-----------ccccchh
Q psy461 51 ICLSTLIIGTIIGNIMVVISVFTYKP-LRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGR-----------WIFGIII 118 (507)
Q Consensus 51 ~~~~ii~~~gi~gN~lvi~~i~~~~~-lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~-----------~~~~~~~ 118 (507)
+++.+++.+|++.|+++++.+.++.. .-+...+++.+-|+.|++.++.... ......... ..+++..
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~-~q~R~i~~~~~~~~~~~GpC~~~~~~~ 81 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFL-TQPRIIPNGTSIAVISYGPCRYFGPWF 81 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhccCCCCcEEEEeeecceecCcHH
Confidence 45778899999999998888877643 2347789999999999998764333 222222211 2346788
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccc
Q psy461 119 CKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGW 185 (507)
Q Consensus 119 C~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~ 185 (507)
|.....+...+...+.+.+.+--..||..+.++.. ++++...++++.+..++...+..++..
T Consensus 82 C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~~~~~ 143 (292)
T PF10317_consen 82 CFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFFFFSP 143 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999987622 667777777888888877776655433
No 18
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=99.25 E-value=6.3e-10 Score=98.37 Aligned_cols=161 Identities=22% Similarity=0.227 Sum_probs=109.8
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy461 75 KPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVY 154 (507)
Q Consensus 75 ~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y 154 (507)
++++.-.+-|+++|.++|++-++..+...+..+..+.-..+...|.+++++..+...++.+.+++||+.-|+.|.+|-+.
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~ 109 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWK 109 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 34456667799999999999988766656666665555556789999999999999999999999999999999998221
Q ss_pred cc---------ccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCccccCCcch-hhhHHHHHHHHHHHHHHHH
Q psy461 155 AQ---------QRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQLTQQRG-YVVYSSLGSFFIPLAIMTL 224 (507)
Q Consensus 155 ~~---------~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~-~~~~~~~~~~~ip~~vi~~ 224 (507)
++ ...+..+..+..++|++....+ +... ..+.+.....+|..+.... +.++..-+..++..+++++
T Consensus 110 ~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la---~i~~-~~~~Y~~~g~WCWi~~~~~~~Rl~l~y~~~~~~~~~~i~ 185 (201)
T PF11710_consen 110 RKRSKNVEGGLYPYRYWVWVIWILVPLLLASLA---FIGL-GGPGYGPAGAWCWIPSRYEWYRLWLHYIWRFIIIFAIII 185 (201)
T ss_pred cccccccccceEEeeeeeehHHHHHHHHHHHHH---Hhcc-ccCcccccCcEEEECCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0111222233334444443333 3221 2233456678898877554 3333333444666778888
Q ss_pred HHHHHHHHHHHHHHH
Q psy461 225 VYVEIFLATKKRLRD 239 (507)
Q Consensus 225 ~y~~I~~~l~~~~~~ 239 (507)
.|+.|+..+||+.|+
T Consensus 186 iY~~if~~lrr~~~~ 200 (201)
T PF11710_consen 186 IYIAIFFYLRRRIRR 200 (201)
T ss_pred HHHHHHHHHhhhhcc
Confidence 999999999998774
No 19
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=99.03 E-value=3.6e-10 Score=103.04 Aligned_cols=164 Identities=16% Similarity=0.168 Sum_probs=106.2
Q ss_pred cchhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCcccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccc--cc
Q psy461 78 RIVQNFFIVSLAVADLTVAIF-VLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPL--VY 154 (507)
Q Consensus 78 r~~~~~ll~~LaisDll~~~~-~~p~~i~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~--~y 154 (507)
.+|.++.+.+||++++++.+. .+|.. .. ..+...+++..||+..++..+.-..|+.+.+++++.+.+.|.-.- +.
T Consensus 8 ~kp~dlIl~hLa~aN~lvLl~rGip~~-~~-~~~~~~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItISP~~s~w~ 85 (265)
T PF03402_consen 8 LKPIDLILIHLALANILVLLSRGIPQT-MA-FFGWKFFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITISPSNSRWA 85 (265)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhHHHH-HH-HhhcccCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEecCCchhh
Confidence 459999999999999988553 24432 22 223224689999999999999999999999999998887775211 11
Q ss_pred -ccccccchhhhhHHHHHHHHHHHHhhccccccC---C--CccccCCCccccCCcchh--hhHHHHHHH--HHHHHHHHH
Q psy461 155 -AQQRTIKRVMMMIMYVWLLSALISSPPLIGWND---W--PEVFEADTPCQLTQQRGY--VVYSSLGSF--FIPLAIMTL 224 (507)
Q Consensus 155 -~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~---~--~~~~~~~~~c~~~~~~~~--~~~~~~~~~--~ip~~vi~~ 224 (507)
-+...++.....+...|++.+++.....++... . .........|........ ..+..+..+ ++.+.+|++
T Consensus 86 ~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~~D~~fvgLM~~ 165 (265)
T PF03402_consen 86 ELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFATLLSFRDVLFVGLMIW 165 (265)
T ss_pred hhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhhhHHHhhHHHHHHHHHh
Confidence 122345566777788999988877653332211 1 111122345654332211 222222222 667788899
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy461 225 VYVEIFLATKKRLRDRAKA 243 (507)
Q Consensus 225 ~y~~I~~~l~~~~~~~~~~ 243 (507)
+-+.+...++||++|.+..
T Consensus 166 aSgyMV~~L~RH~q~VqhI 184 (265)
T PF03402_consen 166 ASGYMVFLLYRHHQQVQHI 184 (265)
T ss_pred hhhhheeeeeecccccccC
Confidence 9999999999998875444
No 20
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=99.02 E-value=4.9e-07 Score=87.20 Aligned_cols=132 Identities=13% Similarity=0.025 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh---h--C--cccccchhH
Q psy461 47 IITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYL---S--G--RWIFGIIIC 119 (507)
Q Consensus 47 ~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~---~--~--~~~~~~~~C 119 (507)
-+...+..+++++|++.++..++.+..++.++....+++....++.++.++..+......+. . + +.......|
T Consensus 17 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C 96 (324)
T PF10292_consen 17 RLSLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRC 96 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHH
Confidence 34456678888999999998888888888888889999999999999887755444433222 1 1 223456789
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHh
Q psy461 120 KIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISS 179 (507)
Q Consensus 120 ~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~ 179 (507)
-+.-....++.....++..++++||++|-.+.-+|... ++.....+..+.|+++++...
T Consensus 97 ~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~-~~~~Gi~l~~~qi~is~~~~~ 155 (324)
T PF10292_consen 97 FILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS-GKWLGILLAFFQILISLLILY 155 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC-CccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888754 223333444445666555443
No 21
>KOG4193|consensus
Probab=98.99 E-value=7.6e-08 Score=98.35 Aligned_cols=166 Identities=16% Similarity=0.287 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccc-h-hHHHHHHHhHHHHHHHHH
Q psy461 58 IGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGI-I-ICKIWLTSDVLCCTASIL 135 (507)
Q Consensus 58 ~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~-~-~C~~~~~~~~~~~~~S~~ 135 (507)
.+.+++=.+.+++++-.+++++..+...++|+++=++. - ..++.+.|.... . .|.+.+++..++..++++
T Consensus 331 ~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~-~-------l~fL~~~~~~~~~~~~C~~~a~llhff~LaaF~ 402 (610)
T KOG4193|consen 331 IISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLA-E-------LLFLLGIDRTSTSVVLCIAAAILLHFFFLAAFF 402 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-H-------HHHhcccccccCcccccHHHHHHHHHHHHHHHH
Confidence 33444444455555555566655577777777772111 1 122334444332 2 799999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCccccCCcchhhhHHHHHHH
Q psy461 136 NLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQLTQQRGYVVYSSLGSF 215 (507)
Q Consensus 136 ~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 215 (507)
.+.++++.=|+.++.-+ .....++.....+..|...+++..............+.....|.......+.+. |
T Consensus 403 Wm~leg~hl~~~~v~vf---~~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~~~~~~~~-----F 474 (610)
T KOG4193|consen 403 WMLLEGFHLYLLLVEVF---RSRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDTQNGFIWS-----F 474 (610)
T ss_pred HHHHHHHHHHHHHHHHh---ccccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCceEEecCCceEEE-----E
Confidence 99999999999776533 334445555555699999988777755544433223344444888766554443 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 216 FIPLAIMTLVYVEIFLATKKRLRD 239 (507)
Q Consensus 216 ~ip~~vi~~~y~~I~~~l~~~~~~ 239 (507)
+.|+.+++++++.++..+-++..+
T Consensus 475 ~GPv~~ii~~Ni~~Fv~t~~~l~~ 498 (610)
T KOG4193|consen 475 LGPVTLIILVNIVMFVVTLKKLLR 498 (610)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888887777666555444
No 22
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=98.88 E-value=1.8e-07 Score=88.47 Aligned_cols=125 Identities=13% Similarity=0.126 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCC--C-cchhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-------ccccchhHHHHH
Q psy461 55 TLIIGTIIGNIMVVISVFTYKP--L-RIVQNFFIVSLAVADLTVAIFVLPL-SLIYYLSGR-------WIFGIIICKIWL 123 (507)
Q Consensus 55 ii~~~gi~gN~lvi~~i~~~~~--l-r~~~~~ll~~LaisDll~~~~~~p~-~i~~~~~~~-------~~~~~~~C~~~~ 123 (507)
+-++.+++.++++++++.++++ . +++.+.+...=++.|++.-+...+. .+....... ....+...++..
T Consensus 6 ~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (275)
T PF02118_consen 6 IYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFY 85 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHH
Confidence 4456677888888888887776 3 6677777777777777664433332 222220000 122456778888
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhh
Q psy461 124 TSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSP 180 (507)
Q Consensus 124 ~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~ 180 (507)
++...+..+.......||++|+-+|..|.++.+..++. ...++++++++++....+
T Consensus 86 ~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~-~~~~i~~i~~~p~~~~~~ 141 (275)
T PF02118_consen 86 FLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRY-YWIIIIIIFLLPFSFTWN 141 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhh-hhhheeeeeehhHHHHHH
Confidence 88999999999999999999999999999998877643 334444445555444333
No 23
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=98.84 E-value=7.2e-07 Score=84.86 Aligned_cols=71 Identities=23% Similarity=0.252 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhHHHHHhhccccCCccCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHH
Q psy461 421 LSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKS 493 (507)
Q Consensus 421 ~~~~~r~~k~l~~i~~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~ 493 (507)
.++++++.+.+++-.++..+|-+|..+........ ....+.+..++..+...+|.+|-++-.+.++.||+-
T Consensus 232 y~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~~--~~~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 232 YQKHKEAVRSLIAQFATSSICILPPFIFVVVVIFE--FEDAQVISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheec--CCCcHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 57788999999998889899999988776554442 233466777888889999999999999999999974
No 24
>KOG4564|consensus
Probab=98.79 E-value=7.2e-07 Score=87.32 Aligned_cols=179 Identities=14% Similarity=0.174 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc--------c----cccchh
Q psy461 51 ICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGR--------W----IFGIII 118 (507)
Q Consensus 51 ~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~--------~----~~~~~~ 118 (507)
++|.+-..++++.=++.++++..-|++|-..|++=.||.++=++-++..+.........+. + ..+...
T Consensus 149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 228 (473)
T KOG4564|consen 149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVG 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchh
Confidence 3444444444444444444455556899899999999999998887766555554442221 1 245689
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCcc
Q psy461 119 CKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPC 198 (507)
Q Consensus 119 C~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c 198 (507)
|+...++...+..+..+-+++=.++=|-.|+--+.. .+++....+++.|.+.+++.++-.+..- ..+...|
T Consensus 229 Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~s----er~~~~~y~~iGWG~P~v~v~~Wai~r~-----~~~d~~C 299 (473)
T KOG4564|consen 229 CKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFS----ERRYFWLYLLIGWGVPAVFVVVWAIVRL-----YLEDTGC 299 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecc----CccHHHHHHHHhhCCcHHHhhhHHhHhe-----eeccccc
Confidence 999999999999988888888777776666543221 2466777888899998888777444331 1222257
Q ss_pred ccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 199 QLTQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLR 238 (507)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~ 238 (507)
...........++-...++.+++-.+..+.|++.+-++.|
T Consensus 300 W~~~~~~~~~WIi~gPi~~ai~vNf~flinIvrILv~KLr 339 (473)
T KOG4564|consen 300 WDSNDTGHIWWIIRGPILLAILVNFIFLINIVRILVTKLR 339 (473)
T ss_pred cccCCCcceEEEEeccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7665543333333334455566666667777777666554
No 25
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=98.79 E-value=2e-06 Score=80.46 Aligned_cols=142 Identities=19% Similarity=0.242 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc-----------cccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy461 82 NFFIVSLAVADLTVAIFVLPLSLIYYLSGRW-----------IFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITD 150 (507)
Q Consensus 82 ~~ll~~LaisDll~~~~~~p~~i~~~~~~~~-----------~~~~~~C~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~ 150 (507)
.-.+..||++|++.|+-++.....++-.... ..+..+|........++..++.|-+.+.|+|-|+.+.+
T Consensus 68 ~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~ 147 (405)
T PF02101_consen 68 RRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRR 147 (405)
T ss_pred chhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeec
Confidence 4588899999999988777777766543221 11347999999999999999999999999999998854
Q ss_pred ccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy461 151 PLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQLTQQRGYVVYSSLGSFFIPLAIMTLVYVEIF 230 (507)
Q Consensus 151 P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ip~~vi~~~y~~I~ 230 (507)
- . ........-.++|.++.++..--+.... .++...|....... +-. -+...+|++++++.+=.++
T Consensus 148 ~---a---g~~~~~lYH~~aWgl~~lL~~~Gl~~Ly-----~Ps~~~Ce~~l~~a--lph-YvttY~PlllVlvaNPiLy 213 (405)
T PF02101_consen 148 S---A---GRSTIWLYHMMAWGLPALLCAEGLAMLY-----YPSISRCESGLEHA--LPH-YVTTYIPLLLVLVANPILY 213 (405)
T ss_pred c---C---CCcchhHHHHHHHHHHHHHHHhccceee-----cCCHHhhhhhhhhc--chh-HHHHHHHHHHHHHhccHHH
Confidence 2 1 1123346667889988776654222111 11222354332211 111 1233566666666666555
Q ss_pred HHHHHHH
Q psy461 231 LATKKRL 237 (507)
Q Consensus 231 ~~l~~~~ 237 (507)
++.-+..
T Consensus 214 ~~a~~~V 220 (405)
T PF02101_consen 214 IKAVRAV 220 (405)
T ss_pred HHHHHHH
Confidence 5544433
No 26
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=98.67 E-value=1.8e-08 Score=96.84 Aligned_cols=72 Identities=21% Similarity=0.318 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHH-hhchhHHHHHhhccccCCccCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHH
Q psy461 421 LSKERRAARTLGIIMGVFV-FCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFK 495 (507)
Q Consensus 421 ~~~~~r~~k~l~~i~~~f~-i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~ 495 (507)
++-++|..+.+++=+++=+ +.++|..++.+...+.-+. .....+...+..+.+++||++-.+.-++||++++
T Consensus 235 ~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~~---~~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~ 307 (307)
T PF10326_consen 235 RKLQKQLFKALVIQTIIPFIFMYIPVFIVFILPFFGIDL---GFFSNIISILISLYPAIDPLPVIFIIKDYRKAIK 307 (307)
T ss_pred HHHHHHHHHHHHHHhhhhheeeecchhheeeeeccCCCC---CccccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence 4667788888888776654 5599988888777664332 2334456678889999999999999999999874
No 27
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=98.57 E-value=1.7e-05 Score=76.00 Aligned_cols=136 Identities=14% Similarity=0.142 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCc-chhHHHHH----HHHHHHHHHHHHHHHHHHHHHhhCc----ccccchhH
Q psy461 49 TMICLSTLIIGTIIGNIMVVISVFTYKPLR-IVQNFFIV----SLAVADLTVAIFVLPLSLIYYLSGR----WIFGIIIC 119 (507)
Q Consensus 49 ~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr-~~~~~ll~----~LaisDll~~~~~~p~~i~~~~~~~----~~~~~~~C 119 (507)
+....=++.+++++-|++.++.+.++...+ +.....++ ...+.|+..+.+..|........+. ...-+.-.
T Consensus 6 ~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~ 85 (302)
T PF10318_consen 6 YSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPT 85 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccCh
Confidence 345666777889999999888887763322 23333333 3446788888888887665554432 11112345
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhcccccc
Q psy461 120 KIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWN 186 (507)
Q Consensus 120 ~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~ 186 (507)
.++.++..........++..+=-+||.++....+ +...++.-....+..++++++..+|.++...
T Consensus 86 ~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~--~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~p 150 (302)
T PF10318_consen 86 PIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS--RSLWKKIRIIFIIFNYIIAFLFFIPIYLSIP 150 (302)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc--cccchhhHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 6667777777777777888888999999996533 1222222334445556666667777665443
No 28
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=98.52 E-value=3e-05 Score=71.86 Aligned_cols=184 Identities=17% Similarity=0.079 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--cccc-cchhHHHHH
Q psy461 47 IITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSG--RWIF-GIIICKIWL 123 (507)
Q Consensus 47 ~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~--~~~~-~~~~C~~~~ 123 (507)
.+..++-++...+..+.|..++..+...|+.+++.-.++--..+.|.+.++...+..+...... .... ....--+.+
T Consensus 6 ~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~ 85 (273)
T PF10316_consen 6 IIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIG 85 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehh
Confidence 4455666677788899999999999877774456666777789999999887766655444321 1111 111222233
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhcccccc--CCCccccCCCccccC
Q psy461 124 TSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWN--DWPEVFEADTPCQLT 201 (507)
Q Consensus 124 ~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~--~~~~~~~~~~~c~~~ 201 (507)
+.......+.......||+||.+|+..|..|+....+-....+++.+-..++.-....+..-+ ......|..-.|...
T Consensus 86 ~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~I~~~~~~~~~~d~~vlf~~C~~~i~~p~~C~~~~C~vn 165 (273)
T PF10316_consen 86 WPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPNFIIIIIALSYGLFDQYVLFGFCDFVIDVPPNCVNFGCAVN 165 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCccCCCCc
Confidence 444445567888999999999999999999887665554444444444444443333222222 112334445556665
Q ss_pred C-cchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy461 202 Q-QRGYVVYSSLGSFFIPLAIMTLVYVEIF 230 (507)
Q Consensus 202 ~-~~~~~~~~~~~~~~ip~~vi~~~y~~I~ 230 (507)
. ...|....-.+.+.+-.+..++.-.+++
T Consensus 166 ~Cf~~Yw~~~~~i~~~li~~~S~~L~~KLf 195 (273)
T PF10316_consen 166 QCFRQYWLTSEMIIFSLIIILSILLCIKLF 195 (273)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4 3334444444444444444444445554
No 29
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=98.38 E-value=0.00078 Score=64.85 Aligned_cols=110 Identities=18% Similarity=0.224 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHH---h---hC--cccc
Q psy461 44 WEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQ-NFFIVSLAVADLTVAIFVLPLSLIYY---L---SG--RWIF 114 (507)
Q Consensus 44 ~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~-~~ll~~LaisDll~~~~~~p~~i~~~---~---~~--~~~~ 114 (507)
+.-.+..++..+++++++++....+..+.++.-....+ .+++.+|..+++=- +...-..+..+ + .+ ...+
T Consensus 18 ~~~~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq-~~y~~~~~~~lyrsf~~~~dpC~i~f 96 (328)
T PF02117_consen 18 WNFRINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQ-ISYAIIQIWSLYRSFFYSDDPCSILF 96 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCeeeEe
Confidence 34566677788888889999988888887776666644 55666666665422 21222222111 1 11 2445
Q ss_pred cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy461 115 GIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVY 154 (507)
Q Consensus 115 ~~~~C~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y 154 (507)
....|.....+..++....++..+++.+||.+|-..|-.|
T Consensus 97 ~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~ 136 (328)
T PF02117_consen 97 TSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYY 136 (328)
T ss_pred ecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Confidence 6678999999988888888999999999999999888443
No 30
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=98.37 E-value=0.00015 Score=67.38 Aligned_cols=72 Identities=13% Similarity=0.080 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHHH-HHhhchhHHHHHhhccccCCccCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHH
Q psy461 420 SLSKERRAARTLGIIMGV-FVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKS 493 (507)
Q Consensus 420 ~~~~~~r~~k~l~~i~~~-f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~ 493 (507)
..+.+++..|.+++-+++ .++|..|-.+......++- +...+...+.......-++++|+.-.+.=+.||+.
T Consensus 237 T~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~i--~~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r 309 (310)
T PF10319_consen 237 TKRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFGI--DLGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR 309 (310)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHcC--ChhHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence 356677888888877665 5678899877765444432 24455666666667778999999999999999975
No 31
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=98.34 E-value=6e-05 Score=67.42 Aligned_cols=187 Identities=13% Similarity=0.202 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHH----HHHHHHHHhhCcccccchhHH
Q psy461 47 IITMICLSTLIIGTIIGNI--MVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFV----LPLSLIYYLSGRWIFGIIICK 120 (507)
Q Consensus 47 ~~~~~~~~ii~~~gi~gN~--lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~----~p~~i~~~~~~~~~~~~~~C~ 120 (507)
+.....+++..+++.+.+. +++.++...+-.+-....|+..|.++-++.+.+. +|..+..+...+..-+ ..-.
T Consensus 13 y~vi~~Fv~st~~stlLt~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~~s-~~f~ 91 (305)
T PF04789_consen 13 YFVISLFVLSTIASTLLTGAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFVQS-ELFI 91 (305)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHhcc-chhh
Confidence 3344444555555555554 3344444433333478889999999887776644 4555544443332222 3445
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccC---CCc
Q psy461 121 IWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEA---DTP 197 (507)
Q Consensus 121 ~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~---~~~ 197 (507)
+..+...+++.+-++.=+.||+.|+...-.--...+.....-..+-+..+|++++..-.......-.|...... ...
T Consensus 92 ~~Sy~idf~h~siLfsNlviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~ 171 (305)
T PF04789_consen 92 FMSYLIDFCHYSILFSNLVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLN 171 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEE
Confidence 66777888889999999999999987765322222344456677777889999987766543322111111000 111
Q ss_pred cccC-------CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 198 CQLT-------QQRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKK 235 (507)
Q Consensus 198 c~~~-------~~~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~ 235 (507)
|... ...+....-.++-+.+|+.+.+ .|+.+..++..
T Consensus 172 C~~~~~~v~~~~P~~IqiiE~ilQ~~IPi~Il~-iYiAIIiKI~~ 215 (305)
T PF04789_consen 172 CETCNSVVDISPPRGIQIIEIILQFGIPIFILV-IYIAIIIKIIK 215 (305)
T ss_pred cCCCCeeEeeCCCCchhHHHHHHHHhHHHHHHH-HHHHHHHHHHH
Confidence 4332 2333445666677788866554 58777776553
No 32
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=98.33 E-value=0.00067 Score=66.66 Aligned_cols=114 Identities=17% Similarity=0.128 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHH---HHHHHHHHHHHHHHhhC---------c
Q psy461 44 WEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADL---TVAIFVLPLSLIYYLSG---------R 111 (507)
Q Consensus 44 ~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDl---l~~~~~~p~~i~~~~~~---------~ 111 (507)
+...+..++..++.+++..-....+.++.+.+..+...+++...+...-+ +.-++..|........+ -
T Consensus 24 ~~~~~~~i~e~~l~~~~~~~~~~~~~i~~~~r~FH~N~~~l~~~~~~~w~e~~i~k~~i~~y~~~~~~~~~~~~~~~~~~ 103 (365)
T PF03125_consen 24 WFYIILLIFELILYIICFYFTFKSCYIILKIRQFHRNLNILFIFILLQWFELIIGKILIIPYQIGIITLGDISIGTYIQW 103 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeecCccchhhhhh
Confidence 34555566666666666666666677777777777766666655544432 22233333333222100 0
Q ss_pred ccc------------cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy461 112 WIF------------GIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQ 157 (507)
Q Consensus 112 ~~~------------~~~~C~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~ 157 (507)
|+. +...--+.+++.........+.+.++++||.+|-..--.|.+.
T Consensus 104 ~t~~~~~m~~v~~~~~~~~l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~ 161 (365)
T PF03125_consen 104 WTDDPSEMIPVNSFNDSWPLFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKK 161 (365)
T ss_pred hccCcccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 111 1112223334444444566789999999999999987778754
No 33
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=98.04 E-value=1.8e-06 Score=79.92 Aligned_cols=128 Identities=16% Similarity=0.100 Sum_probs=2.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHhHHHHHH
Q psy461 53 LSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTA 132 (507)
Q Consensus 53 ~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 132 (507)
..+-+.+++++-+++++.+...|++|+..+....+|++++++..+..+.. ......+.....+..|.+.+++...+..+
T Consensus 7 ~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~~~hy~~la 85 (242)
T PF00002_consen 7 SYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAILLHYFFLA 85 (242)
T ss_dssp HHHHHH--------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhhHhHHHHHH
Confidence 33444445555555555555567888877888999999999886643322 21111111111223599999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccc
Q psy461 133 SILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGW 185 (507)
Q Consensus 133 S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~ 185 (507)
+.+-+.+.+++-|..++.+.. ..+++.....+..|.+++++........
T Consensus 86 ~f~Wm~~~~~~l~~~~~~~~~----~~~~~~~~~~~~gwg~P~~iv~i~~~~~ 134 (242)
T PF00002_consen 86 SFFWMLVEAFYLYRLLVKVFN----SSRRRFWWYYLIGWGIPALIVVISVAVN 134 (242)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHhheeEEEeec----ccchhhheeeeeeecCcceeeeeeeeec
Confidence 999999999999999987632 1245566677788999988777655544
No 34
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=97.35 E-value=0.025 Score=52.94 Aligned_cols=138 Identities=13% Similarity=0.102 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhhccCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHhHHHHHHHHHHHH
Q psy461 60 TIIGNIMVVISVFTYKPLR-IVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLC 138 (507)
Q Consensus 60 gi~gN~lvi~~i~~~~~lr-~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~ 138 (507)
+++|.+++++.+..+-+-| .++-.++.-+.+.++...+- .+++.-.. ...-+..|-+...+.......-....+
T Consensus 4 s~i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~IN----aiIW~~n~-~~~~~~wCDI~~kl~~~~~~g~~~a~l 78 (283)
T PF02076_consen 4 SFIAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFIN----AIIWRDND-INWWPVWCDISTKLIIGSSVGIPAASL 78 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHh----hhhcCCCC-CccCceeeeehHHHHHHHHHHHHHHHH
Confidence 4444444444443332334 47778888888888876442 22222111 111227899988777776666544455
Q ss_pred HHHHHHHHHhhcccccc--cccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCccccCCcc
Q psy461 139 AIALDRYWAITDPLVYA--QQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQLTQQR 204 (507)
Q Consensus 139 ~IaidRy~aI~~P~~y~--~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 204 (507)
+|+-.=| .|..+.... ..-.+|+..+=+++++.+.++.+...++..+.... --+..-|......
T Consensus 79 cI~r~L~-~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~-I~e~~GC~~~~~~ 144 (283)
T PF02076_consen 79 CIMRRLY-RIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFD-IVEDVGCYPAIYP 144 (283)
T ss_pred HHHHHHH-HHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccee-EecccCCccCCCC
Confidence 5544333 233332221 11235777778888999998888776665543211 2333346555443
No 35
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=97.31 E-value=0.17 Score=48.45 Aligned_cols=156 Identities=12% Similarity=0.043 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH--hh-C----------c
Q psy461 45 EAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYY--LS-G----------R 111 (507)
Q Consensus 45 ~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~--~~-~----------~ 111 (507)
+.-..-....+...+.++.+++.++.+..+++.-.-...-++-|++.-+++++..+...+... .. + .
T Consensus 7 e~~~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~ 86 (328)
T PF01534_consen 7 EKEFARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQ 86 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEee
Confidence 344445566667777777888877777766553333455666677777777665444433310 00 0 0
Q ss_pred ccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCcc
Q psy461 112 WIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEV 191 (507)
Q Consensus 112 ~~~~~~~C~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~ 191 (507)
...+...|.+...+.+++..++..--+.+++.-|++......... -.+.....-++.|.++.+..+..+.......
T Consensus 87 ~~~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~--i~~~s~yfH~~aW~iP~~~ti~vL~~~~Vdg-- 162 (328)
T PF01534_consen 87 DGLENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEA--IEKKSSYFHLVAWGIPAVLTIAVLALRKVDG-- 162 (328)
T ss_pred cCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcch--hhhhcchhhhHHhhhhHHHHHHHHHhccccc--
Confidence 122457899999999888877777777889999998876543222 2366777788999999887777555443322
Q ss_pred ccCCCccccCCcc
Q psy461 192 FEADTPCQLTQQR 204 (507)
Q Consensus 192 ~~~~~~c~~~~~~ 204 (507)
+.-.+.|..-..+
T Consensus 163 D~ltGiC~Vg~~~ 175 (328)
T PF01534_consen 163 DELTGICFVGNQN 175 (328)
T ss_pred ccccceeEEeCCC
Confidence 2334457665433
No 36
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=97.21 E-value=0.057 Score=51.20 Aligned_cols=121 Identities=12% Similarity=-0.016 Sum_probs=77.3
Q ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCC---c--
Q psy461 116 IIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWP---E-- 190 (507)
Q Consensus 116 ~~~C~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~---~-- 190 (507)
+.+=++..++...+.+.+.+.-++.++=|.+.+..|..+.+ ...+-.+..+-.+.+++++.++|.+...+.-. .
T Consensus 100 n~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~-i~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf 178 (307)
T PF10322_consen 100 NHFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKK-ICRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPF 178 (307)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhH-HHHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCC
Confidence 44567888899999999999999999999999999976533 34455566777788888888888655444210 0
Q ss_pred cccCCCc-cccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 191 VFEADTP-CQLTQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRL 237 (507)
Q Consensus 191 ~~~~~~~-c~~~~~~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~ 237 (507)
..+.... -...+...............-+++++++++.+++++|+.+
T Consensus 179 ~fGAI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k 226 (307)
T PF10322_consen 179 PFGAIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLK 226 (307)
T ss_pred CCCEEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000000 0011111122233334445556677788999999998876
No 37
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=97.21 E-value=0.00071 Score=49.02 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhch-hHHHHHhhccccCCccCchhHHHHHHHHHhhhcchhhHHHHhhcHHH
Q psy461 421 LSKERRAARTLGIIMGVFVFCWL-PFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDF 490 (507)
Q Consensus 421 ~~~~~r~~k~l~~i~~~f~i~w~-P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~f 490 (507)
.++-+|.+|.|++.-++|+++|+ |..+-.+-...........++..++..+..+++++|-++|.++-+..
T Consensus 4 r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw 74 (76)
T PF11970_consen 4 RKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPW 74 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheeeecccC
Confidence 45567889999999999999999 86544433332223344567777888899999999999999876543
No 38
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=96.32 E-value=0.058 Score=46.55 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHh------hC-cccccchhHH
Q psy461 50 MICLSTLIIGTIIGNIMVVISVFTYKPLRI--VQNFFIVSLAVADLTVAIFVLPLSLIYYL------SG-RWIFGIIICK 120 (507)
Q Consensus 50 ~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~--~~~~ll~~LaisDll~~~~~~p~~i~~~~------~~-~~~~~~~~C~ 120 (507)
+..=.++-..+.+.+.++++-+.++|++-. .+.+.. +-+..-++..|+.+...+ .+ +-..+-..|.
T Consensus 44 i~~e~~v~~~s~~~s~~L~ifi~~rk~l~~~~ksTIvF-----aT~g~fvLtlP~~lf~~wl~~~l~~~~ep~ytI~vCS 118 (226)
T PF06681_consen 44 ITVEFIVNTVSWLFSYFLCIFIWRRKNLIRSYKSTIVF-----ATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYTIFVCS 118 (226)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhHHHHHhhcCeEEE-----eeHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeeh
Confidence 444556666677778776666666654211 111211 112222334555443221 12 1223557899
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy461 121 IWLTSDVLCCTASILNLCAIALDRYWAITDPLV 153 (507)
Q Consensus 121 ~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~ 153 (507)
+.-.+...+..++-...+++|++||+.|++-.|
T Consensus 119 flk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 119 FLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred HHHhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 988888777766666677899999999987533
No 39
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=95.89 E-value=1.2 Score=39.79 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=39.1
Q ss_pred ccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy461 114 FGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQ 157 (507)
Q Consensus 114 ~~~~~C~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~ 157 (507)
.++..++.......+....+++.-..+++|||+|....-+|...
T Consensus 80 I~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~ 123 (236)
T PF02175_consen 80 IDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENT 123 (236)
T ss_pred EchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccC
Confidence 45688999999999999999999999999999999988777654
No 40
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=94.11 E-value=0.062 Score=44.66 Aligned_cols=60 Identities=10% Similarity=0.085 Sum_probs=48.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccc
Q psy461 124 TSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLI 183 (507)
Q Consensus 124 ~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~ 183 (507)
.+..++....++...+|+++|-.+|.+|++....+|.++.+..+.+..++.+...+.|++
T Consensus 49 L~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~ 108 (153)
T PF03383_consen 49 LFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYF 108 (153)
T ss_pred eeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 345556667778889999999999999988666899999999998887777776666655
No 41
>KOG4289|consensus
Probab=92.72 E-value=1.5 Score=48.76 Aligned_cols=63 Identities=10% Similarity=0.132 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHhhccccCCccCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHH
Q psy461 425 RRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFK 495 (507)
Q Consensus 425 ~r~~k~l~~i~~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~ 495 (507)
.+..+..++++++.-..|+-.++.. ......+..+...+.++...+--++|+..|.+.|++++
T Consensus 2337 v~~lq~~fl~llllsatwl~~ll~v--------n~~~l~fhyl~a~~~~lqg~~Vlll~cVl~~~~raa~~ 2399 (2531)
T KOG4289|consen 2337 VSVLQHSFLLLLLLSATWLLGLLAV--------NPDPLEFHYLFASIIGLQGPFVLLLWCVLNIEVRAALK 2399 (2531)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHhhhHHHHHHHhhhcHHHHHhhc
Confidence 4466677777777777776543321 11223344455556666667777889999999999988
No 42
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=68.78 E-value=1.2e+02 Score=29.72 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 206 YVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRA 241 (507)
Q Consensus 206 ~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~ 241 (507)
+.....+..-++|++.++..-+|+.|..++|+++..
T Consensus 301 ~~~~i~~~la~i~~i~l~~~vvR~vR~~~~hr~~~~ 336 (374)
T PF01528_consen 301 LHTGIAINLAVIAIICLIMMVVRLVRAFLYHRRRST 336 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 444445555677888888888899999888876533
No 43
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=57.84 E-value=1.4e+02 Score=28.25 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCcccccchhHHHHHH
Q psy461 52 CLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSL-AVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWLT 124 (507)
Q Consensus 52 ~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~L-aisDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~ 124 (507)
.+.++.++|++.|++..+.+.+.+. ...|+=-..| +++|++-.+..+...+...+.+ |...+..+.+...
T Consensus 126 ~ml~va~~GL~vN~~~a~ll~~~~~--~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~~-w~~~Dpi~si~i~ 196 (296)
T COG1230 126 GMLVVAIIGLVVNLVSALLLHKGHE--ENLNMRGAYLHVLGDALGSVGVIIAAIVIRFTG-WSWLDPILSIVIA 196 (296)
T ss_pred chHHHHHHHHHHHHHHHHHhhCCCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccchHHHHHHH
Confidence 4677888999999888887766511 1334333333 3589998887777777666655 4445555544433
No 44
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=51.59 E-value=2.2e+02 Score=26.98 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=16.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy461 212 LGSFFIPL-AIMTLVYVEIFLATKKRLR 238 (507)
Q Consensus 212 ~~~~~ip~-~vi~~~y~~I~~~l~~~~~ 238 (507)
.+++++|+ +...+.+..++..+.+..+
T Consensus 187 ~~~~~~~l~~~~~~~~~wi~~sL~~t~~ 214 (295)
T PF06814_consen 187 FIFFLLPLCILDLFFIVWIFRSLSKTIR 214 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555 4446677777777766433
No 45
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=48.31 E-value=80 Score=25.86 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=30.5
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhchhHHHHHhhccccCC
Q psy461 417 QKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDT 457 (507)
Q Consensus 417 ~~~~~~~~~r~~k~l~~i~~~f~i~w~P~~i~~~~~~~~~~ 457 (507)
++++.+.+++.....+...++|+++++-+....-...+.++
T Consensus 27 r~~~~~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~g~ 67 (133)
T PF04238_consen 27 RRGRIKLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFGGP 67 (133)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence 45567788899999999999999999987766444444433
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=46.69 E-value=4.1e+02 Score=28.78 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=10.3
Q ss_pred ccchhhhhHHHHHHHHH
Q psy461 159 TIKRVMMMIMYVWLLSA 175 (507)
Q Consensus 159 t~~~~~~~i~~~w~~s~ 175 (507)
|-+.+++..+..|++-+
T Consensus 115 ~~~~~~~~~~~~~~~~~ 131 (697)
T PF09726_consen 115 TDRGICLPTVSLWILFV 131 (697)
T ss_pred ccCCccHHHHHHHHHHH
Confidence 44556666667776643
No 47
>PF13853 7tm_4: Olfactory receptor
Probab=45.90 E-value=1.1 Score=37.45 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHHHHhhccc------cccCCCccccCCC-----ccccCCcchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 164 MMMIMYVWLLSALISSPPLI------GWNDWPEVFEADT-----PCQLTQQRGY-VVYSSLGSFFIPLAIMTLVYVEIFL 231 (507)
Q Consensus 164 ~~~i~~~w~~s~~~~~~~~~------~~~~~~~~~~~~~-----~c~~~~~~~~-~~~~~~~~~~ip~~vi~~~y~~I~~ 231 (507)
..++++.|+.+++..++... +.+..+.+.++ . .|.....+.. .........+.|+.+++++|++|+.
T Consensus 4 ~~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~-~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~ 82 (144)
T PF13853_consen 4 LLLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCD-PPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILR 82 (144)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeC-HHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEe
Confidence 34556778877776666432 22222222333 2 2555443333 2333344558899999999999999
Q ss_pred HHHHHHH
Q psy461 232 ATKKRLR 238 (507)
Q Consensus 232 ~l~~~~~ 238 (507)
.+.|...
T Consensus 83 avlki~S 89 (144)
T PF13853_consen 83 AVLKIPS 89 (144)
T ss_pred hhhcccc
Confidence 8887643
No 48
>KOG1056|consensus
Probab=43.90 E-value=2.3e+02 Score=31.23 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=42.8
Q ss_pred ccccccccccccccCCcccc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-------cchhHHHHH
Q psy461 17 DISVCVEEEKQYYPSAFFNN---IEYSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPL-------RIVQNFFIV 86 (507)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~l-------r~~~~~ll~ 86 (507)
|...|.....+.||.+.... .+.+.-.|. -...++.+++.++|++.=++++.++.+.... |.-.++++.
T Consensus 527 d~~tc~~C~~~~wp~~~~tgc~~~~~~yl~W~-~~~~i~~l~lA~LGii~tl~vlv~fvr~~~TpvVkasgreLsyiLL~ 605 (878)
T KOG1056|consen 527 DEFTCSDCQLGQWPNASLTGCFDIPVSYLRWR-SPWSIAPLLLAILGIIATLFVLVLFVRYNDTPVVKASGRELSYILLL 605 (878)
T ss_pred CcceeccCCcCcCCCcccCCccccchhheecc-ccccHHHHHHHHHHHHHHHHhheeEEEecCCceEEecCcEehHHHHH
Confidence 33445555566666653222 222222232 3345778888889999998888888776543 334556666
Q ss_pred HHHH
Q psy461 87 SLAV 90 (507)
Q Consensus 87 ~Lai 90 (507)
++.+
T Consensus 606 gi~l 609 (878)
T KOG1056|consen 606 GIFL 609 (878)
T ss_pred HHHH
Confidence 6544
No 49
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=41.84 E-value=2.3e+02 Score=30.70 Aligned_cols=26 Identities=23% Similarity=0.706 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy461 83 FFIVSLAVADLTVAIFVLPLSLIYYLS 109 (507)
Q Consensus 83 ~ll~~LaisDll~~~~~~p~~i~~~~~ 109 (507)
+|++..+.+|+++ ++++|..+..++.
T Consensus 78 ~~~~~~~~~d~~~-~~~~p~~~~~~~~ 103 (697)
T PF09726_consen 78 FFVCIAFTSDLIC-LFFIPVHWLFFAA 103 (697)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3444455578765 7788888776654
No 50
>KOG4193|consensus
Probab=41.76 E-value=4.6e+02 Score=27.91 Aligned_cols=35 Identities=9% Similarity=-0.097 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy461 208 VYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAK 242 (507)
Q Consensus 208 ~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~ 242 (507)
.|.+.++-.+-.+.|.+.|+..-.++|+..++...
T Consensus 546 ~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~ 580 (610)
T KOG4193|consen 546 AYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLC 580 (610)
T ss_pred HHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhc
Confidence 33444444555556666666666666665555433
No 51
>KOG4220|consensus
Probab=40.88 E-value=3.8e+02 Score=26.75 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=20.6
Q ss_pred HHHHHHhhhcchhhHHHHhhcHHHHHHHHHHHHhhh
Q psy461 467 FITWLGYINSGINPIIYTIFNLDFRKSFKRLLNKVS 502 (507)
Q Consensus 467 ~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~~~~~ 502 (507)
++..=..+|+.+=++--.-+.+-||+-+.--+++.+
T Consensus 458 LCYINSTiNP~CYALCNatFrkTfk~lL~Cr~~~~~ 493 (503)
T KOG4220|consen 458 LCYINSTINPLCYALCNATFRKTFKRLLLCRWKKRR 493 (503)
T ss_pred eeeecccccHHHHHHHhHHHHHHHHHhheeeecccc
Confidence 334444555555666666666667666665555444
No 52
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=40.69 E-value=49 Score=29.47 Aligned_cols=33 Identities=6% Similarity=0.282 Sum_probs=22.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 204 RGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKR 236 (507)
Q Consensus 204 ~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~ 236 (507)
..+..+...+.|.+|.++-+...+.++-++|.+
T Consensus 195 e~~~~~lwyi~Y~vPY~~~ig~~i~l~~~~~~~ 227 (230)
T PF03904_consen 195 ESFWTYLWYIAYLVPYIFAIGLFIYLYEWIRAK 227 (230)
T ss_pred HhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 346666777888999888666666666666553
No 53
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=37.50 E-value=42 Score=22.62 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q psy461 51 ICLSTLIIGTIIGNIMVVISVFT 73 (507)
Q Consensus 51 ~~~~ii~~~gi~gN~lvi~~i~~ 73 (507)
.+.+++.+.-++||++++---.+
T Consensus 6 wlIIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 6 WLIIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred hHHHHHHHHHHHhHHHHHHHhcc
Confidence 34444555567899776654433
No 54
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=35.98 E-value=86 Score=21.51 Aligned_cols=22 Identities=18% Similarity=0.378 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhch
Q psy461 422 SKERRAARTLGIIMGVFVFCWL 443 (507)
Q Consensus 422 ~~~~r~~k~l~~i~~~f~i~w~ 443 (507)
++.+|...+++++.+++++-|+
T Consensus 33 k~~~~~~~i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 33 KRMRKTQYIFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555443
No 55
>PF15383 TMEM237: Transmembrane protein 237
Probab=35.10 E-value=1.5e+02 Score=27.40 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=25.9
Q ss_pred HHHHHHHhhccc-ccccccccchhhhhHHHHHHHHHHHHhhcccc
Q psy461 141 ALDRYWAITDPL-VYAQQRTIKRVMMMIMYVWLLSALISSPPLIG 184 (507)
Q Consensus 141 aidRy~aI~~P~-~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~ 184 (507)
++|||- +.+.. ...+........++.+++|+++++..+.....
T Consensus 156 afDr~d-l~~~~~~~~r~~~~~~~~~lai~ly~~~lvlsls~~~~ 199 (253)
T PF15383_consen 156 AFDRYD-LAHFSMAHLRGFLKLDPGALAILLYFIALVLSLSCQMT 199 (253)
T ss_pred hhhhHH-hhcccHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHH
Confidence 467764 33332 22334445556677778899988888775443
No 56
>PHA03235 DNA packaging protein UL33; Provisional
Probab=33.47 E-value=5e+02 Score=25.96 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 216 FIPLAIMTLVYVEIFLATKKRLRDRA 241 (507)
Q Consensus 216 ~ip~~vi~~~y~~I~~~l~~~~~~~~ 241 (507)
.+-.++--+.|+..-+..|+..++.-
T Consensus 296 ~~ns~lNPiIY~~~~~~FRk~~~~~l 321 (409)
T PHA03235 296 NLHCLLNPILYAFLGNDFLKRFRQCF 321 (409)
T ss_pred HHHHhHhHHHHHHhhHHHHHHHHHHH
Confidence 44456667778887777777765543
No 57
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=33.03 E-value=1.1e+02 Score=22.14 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 57 IIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLI 105 (507)
Q Consensus 57 ~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~ 105 (507)
.++|+++=...+-++..+.+.++-.++-.+|-+++-++...+--|+.+.
T Consensus 4 ~i~g~Iai~~~iR~~~~~~r~~KL~yLnv~~F~iaalIaL~i~~P~g~i 52 (78)
T PF09882_consen 4 IIIGIIAILMAIRIFLTKSRARKLLYLNVINFAIAALIALYIKSPMGAI 52 (78)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHhhhHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4456666666677777777777777888888888888776665665554
No 58
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=32.87 E-value=1.9e+02 Score=22.30 Aligned_cols=60 Identities=13% Similarity=-0.022 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHhhccccCCccC-chhHHHHHHHHHhhhcchhhHH
Q psy461 423 KERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCM-SDRLINFITWLGYINSGINPII 482 (507)
Q Consensus 423 ~~~r~~k~l~~i~~~f~i~w~P~~i~~~~~~~~~~~~~-~~~~~~~~~~l~~~ns~~NPiI 482 (507)
.++...+.+.++..+=+..-+|.++..++-.+.+.... ...+.....++..+-.+.|-+.
T Consensus 34 ~~~~~~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~w~ 94 (100)
T TIGR02230 34 ATRSIWEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNAWH 94 (100)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777766667777777666555443211 2234444556677777777643
No 59
>KOG4349|consensus
Probab=32.56 E-value=2.6e+02 Score=22.29 Aligned_cols=88 Identities=11% Similarity=0.033 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCcccccchhHHH
Q psy461 43 EWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAV-ADLTVAIFVLPLSLIYYLSGRWIFGIIICKI 121 (507)
Q Consensus 43 ~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~Lai-sDll~~~~~~p~~i~~~~~~~~~~~~~~C~~ 121 (507)
+.+.-++...+.-..++-+.+-++.++.+.++|--| -..+.++-+.+ .-+..++...-.................|.+
T Consensus 44 Emwy~vFLWal~Ss~fih~~A~ilalFTLRkHkygr-F~si~iliMgfi~P~~~Gi~tS~viA~~~~As~~~ms~~y~~i 122 (143)
T KOG4349|consen 44 EMWYSVFLWALLSSMFIHLGATILALFTLRKHKYGR-FISIPILIMGFIIPFVFGIPTSMVLALAMYASKNAVSTWYCAI 122 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccce-eeehHHHHHHHHHHHHhcchHHHHHHHHHHHccCCccHHHHHH
Confidence 333333444444455566777767777775544433 22233322222 2222222111111112222334556788888
Q ss_pred HHHHhHHHHH
Q psy461 122 WLTSDVLCCT 131 (507)
Q Consensus 122 ~~~~~~~~~~ 131 (507)
.+..+.++..
T Consensus 123 ~G~~QT~~i~ 132 (143)
T KOG4349|consen 123 MGIIQTLLIF 132 (143)
T ss_pred HHHHHHHHHH
Confidence 8887775544
No 60
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=29.22 E-value=4.4e+02 Score=23.98 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHH
Q psy461 134 ILNLCAIALDRYWA 147 (507)
Q Consensus 134 ~~~l~~IaidRy~a 147 (507)
...+..+..||++.
T Consensus 142 l~~l~~~~~D~~v~ 155 (232)
T PF10329_consen 142 LSSLWGILADRYVE 155 (232)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455677899886
No 61
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=29.16 E-value=5e+02 Score=24.59 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q psy461 132 ASILNLCAIALDRYWAITDP 151 (507)
Q Consensus 132 ~S~~~l~~IaidRy~aI~~P 151 (507)
.-+|.++.+.+||++...-.
T Consensus 52 glvwgl~I~~lDR~ivss~~ 71 (301)
T PF14362_consen 52 GLVWGLVIFNLDRFIVSSIR 71 (301)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 35678888999999988654
No 62
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=28.49 E-value=3e+02 Score=21.86 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 43 EWEAIITMICLSTLIIGTIIGNIMVVIS 70 (507)
Q Consensus 43 ~~~~~~~~~~~~ii~~~gi~gN~lvi~~ 70 (507)
.|-.+++++++.++..+.++..+++..-
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l~~~~ 67 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLLLFFG 67 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3666777777777777766666554443
No 63
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=28.27 E-value=2.7e+02 Score=25.84 Aligned_cols=18 Identities=33% Similarity=0.672 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHhhccc
Q psy461 166 MIMYVWLLSALISSPPLI 183 (507)
Q Consensus 166 ~i~~~w~~s~~~~~~~~~ 183 (507)
.-.+.|..++++++|++-
T Consensus 200 ~~~l~w~aA~LFAlp~lR 217 (256)
T PF14494_consen 200 PPMLTWMAAMLFALPPLR 217 (256)
T ss_pred cchHHHHHHHHHhhhhHh
Confidence 446999999999999764
No 64
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.65 E-value=67 Score=25.80 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhhccCCCc
Q psy461 60 TIIGNIMVVISVFTYKPLR 78 (507)
Q Consensus 60 gi~gN~lvi~~i~~~~~lr 78 (507)
|++|=+++|+.++|+++.+
T Consensus 76 GvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 76 GVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3444434444443433333
No 65
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=27.04 E-value=1e+03 Score=27.52 Aligned_cols=18 Identities=17% Similarity=0.275 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy461 212 LGSFFIPLAIMTLVYVEI 229 (507)
Q Consensus 212 ~~~~~ip~~vi~~~y~~I 229 (507)
-+++++.++++.+++..+
T Consensus 633 r~~~i~~~~~l~~~~~~~ 650 (1109)
T PRK10929 633 RLCFILLCGALSLVTLSL 650 (1109)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445455555555443
No 66
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=26.35 E-value=3.7e+02 Score=30.07 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 43 EWEAIITMICLSTLIIGTIIGNIMVVIS 70 (507)
Q Consensus 43 ~~~~~~~~~~~~ii~~~gi~gN~lvi~~ 70 (507)
.+..++.+.|+.-++.+++++-+++-++
T Consensus 929 ~~~k~y~ltFi~SIiwIsi~SyilV~~a 956 (1096)
T TIGR00927 929 EARKFFVITFLGSIMWIAMFSYLMVWWA 956 (1096)
T ss_pred cccceeeehHHHHHHHHHHHHHHHHHHH
Confidence 3334444555666666677776554443
No 67
>COG2322 Predicted membrane protein [Function unknown]
Probab=25.66 E-value=2.6e+02 Score=23.76 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=28.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhchhHHHHHhhc
Q psy461 417 QKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSL 452 (507)
Q Consensus 417 ~~~~~~~~~r~~k~l~~i~~~f~i~w~P~~i~~~~~ 452 (507)
++.+.++++++..+-...+++|+++++-.....--.
T Consensus 68 krg~i~~Hk~aMltA~~l~l~FlvlYltr~~l~~~t 103 (177)
T COG2322 68 KRGNIEKHKRAMLTAFTLALVFLVLYLTRHGLGGET 103 (177)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344678889999999999999999998876654333
No 68
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=25.11 E-value=1e+02 Score=18.47 Aligned_cols=17 Identities=24% Similarity=0.342 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy461 48 ITMICLSTLIIGTIIGN 64 (507)
Q Consensus 48 ~~~~~~~ii~~~gi~gN 64 (507)
...++++.++++|++.|
T Consensus 10 ~vV~ffv~LFifGflsn 26 (36)
T PF02532_consen 10 TVVIFFVSLFIFGFLSN 26 (36)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHhccccCC
Confidence 34455555666666655
No 69
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.14 E-value=2.5e+02 Score=19.38 Aligned_cols=31 Identities=10% Similarity=0.150 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy461 213 GSFFIPLAIMTLVYVEIFLATKKRLRDRAKA 243 (507)
Q Consensus 213 ~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~ 243 (507)
...+..+.+.++.++.|+...|+++|.....
T Consensus 10 a~a~~t~~~~l~fiavi~~ayr~~~K~~~d~ 40 (60)
T COG4736 10 ADAWGTIAFTLFFIAVIYFAYRPGKKGEFDE 40 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 3344445555666677777777776665544
No 70
>KOG2575|consensus
Probab=23.45 E-value=78 Score=31.06 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHH
Q psy461 423 KERRAARTLGIIMGVFVFCWLPFFLMY 449 (507)
Q Consensus 423 ~~~r~~k~l~~i~~~f~i~w~P~~i~~ 449 (507)
.-.+.++.-++++++|.++|+|+....
T Consensus 253 ~f~ri~~ia~~Vv~TF~iiw~P~~~~~ 279 (510)
T KOG2575|consen 253 SFARIIKIALAVVGTFVIIWLPFLLSG 279 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 357889999999999999999986543
No 71
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=23.07 E-value=6e+02 Score=23.41 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=53.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccc--cccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCcccc
Q psy461 123 LTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQ--RTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQL 200 (507)
Q Consensus 123 ~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~--~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~ 200 (507)
.+...+...+--+.+.++|+.|++.--.|-. .+. .+.+.....+.....+.++..+........... .+.... .
T Consensus 86 ~~~l~i~~~v~~lllsLLAIqRFllyFfP~~-Ek~v~~~~k~~~~~I~~lY~~~~~k~i~~~~~~~~~~~--~~~~~~-~ 161 (267)
T PF10325_consen 86 IFILYIITQVFHLLLSLLAIQRFLLYFFPSS-EKYVNFSQKNIKKIIWFLYIFFILKDIVFFIWYFISFN--NESTEE-I 161 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cccchh-h
Confidence 3344444455567889999999999998852 222 344444445555554444433222211111000 000000 0
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 201 TQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLR 238 (507)
Q Consensus 201 ~~~~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~ 238 (507)
+....+.....+.. -+-+.+..++|+-|+..+||.+.
T Consensus 162 ~~~~~~~~~~~~~~-~~ll~~S~lLYIPI~isirK~~~ 198 (267)
T PF10325_consen 162 ETFSYIYVIFYIIL-NILLFLSALLYIPIFISIRKLSH 198 (267)
T ss_pred hHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhhc
Confidence 11111111111121 23345566789999998888764
No 72
>PRK03557 zinc transporter ZitB; Provisional
Probab=22.69 E-value=6.8e+02 Score=23.90 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhHHHH-HHHHHHHHHHHHHH
Q psy461 56 LIIGTIIGNIMVVISVFTYKPLRIVQNFFI-VSLAVADLTVAIFV 99 (507)
Q Consensus 56 i~~~gi~gN~lvi~~i~~~~~lr~~~~~ll-~~LaisDll~~~~~ 99 (507)
+.++|++.|.+..+...+.++.++. ++-- .-=...|.+..+..
T Consensus 127 v~~~~~~~~~~~~~~~~~~~~~~s~-~l~a~~~h~~~D~l~s~~v 170 (312)
T PRK03557 127 IAVAGLLANILSFWLLHHGSEEKNL-NVRAAALHVLGDLLGSVGA 170 (312)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCH-HHHHHHHHHHHHHHHHHHH
Confidence 4456677776555444333222222 2211 11234676665543
No 73
>COG4606 CeuB ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
Probab=20.13 E-value=7.3e+02 Score=23.27 Aligned_cols=126 Identities=10% Similarity=0.122 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCcccccchhHHHHHHHhHHHHH
Q psy461 54 STLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYL--SGRWIFGIIICKIWLTSDVLCCT 131 (507)
Q Consensus 54 ~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~--~~~~~~~~~~C~~~~~~~~~~~~ 131 (507)
.+..++++.|+ ++...+.++-++|..-.+-++.+-....+.++.....+=...+ .+.|.-++..-...+-.......
T Consensus 111 lvA~v~al~Gt-~~F~~~l~ri~~k~~i~VPLiGIm~Ggvi~sitTFiAy~~dllQ~l~~W~~G~Fs~v~~GrYElL~i~ 189 (321)
T COG4606 111 LVAFVFALAGT-LLFMMILRRIKLKDVLFVPLIGIMFGGVISSITTFIAYRFDLLQSLGAWLQGDFSGVLRGRYELLWIS 189 (321)
T ss_pred HHHHHHHHHHH-HHHHHHHHhccccceEeehhHHHHHHhHHHHHHHHHHHHHHHHHHhhHHhcCchHhhhccceeehHHH
Confidence 34455677777 4455566777778877777888777766654432222222221 14566655333332222222222
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhh
Q psy461 132 ASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSP 180 (507)
Q Consensus 132 ~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~ 180 (507)
.-...++....||+-..=.---......-.+-..+..+..+++++.++.
T Consensus 190 ~~l~i~ay~~AdrfTi~GmGedfs~NLGLnY~~v~~igl~iValitsvV 238 (321)
T COG4606 190 IPLAILAYLFADRFTIAGMGEDFSVNLGLNYNRVVNIGLFIVALITSVV 238 (321)
T ss_pred HHHHHHHHHHhhheeeeccchhhhhhcCccHHHHHHHHHHHHHHHhceE
Confidence 3334445555677644322111112222334445555555666655544
No 74
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=20.08 E-value=1.9e+02 Score=22.21 Aligned_cols=28 Identities=18% Similarity=0.408 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy461 216 FIPLAIMTLVYVEIFLATKKRLRDRAKA 243 (507)
Q Consensus 216 ~ip~~vi~~~y~~I~~~l~~~~~~~~~~ 243 (507)
+..++++.+.|..++|--+|+.+.+.+.
T Consensus 13 l~~vl~~~ifyFli~RPQrKr~K~~~~m 40 (97)
T COG1862 13 LPLVLIFAIFYFLIIRPQRKRMKEHQEL 40 (97)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3334555667777777666666555544
Done!