Query psy461
Match_columns 507
No_of_seqs 210 out of 1652
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 21:18:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4grv_A Neurotensin receptor ty 100.0 7.8E-52 2.7E-56 425.7 6.7 203 40-242 26-241 (510)
2 2rh1_A Beta-2-adrenergic recep 100.0 9.7E-45 3.3E-49 372.4 30.9 198 43-240 37-240 (500)
3 3vw7_A Proteinase-activated re 100.0 1.9E-45 6.7E-50 376.6 21.2 201 41-242 15-224 (484)
4 3uon_A Human M2 muscarinic ace 100.0 5.7E-45 1.9E-49 371.3 23.9 200 44-243 21-223 (467)
5 3eml_A Human adenosine A2A rec 100.0 9.3E-44 3.2E-48 364.4 27.8 197 45-243 20-229 (488)
6 4eiy_A Adenosine receptor A2A/ 100.0 7.5E-45 2.6E-49 368.3 19.0 391 40-506 25-432 (447)
7 3pbl_A D(3) dopamine receptor, 100.0 7.7E-44 2.6E-48 364.4 24.9 190 45-239 37-230 (481)
8 3rze_A Histamine H1 receptor, 100.0 3.9E-44 1.3E-48 363.6 22.2 201 43-243 5-208 (452)
9 1u19_A Rhodopsin; G protein-co 100.0 1.7E-43 5.8E-48 346.3 25.0 292 37-504 29-328 (349)
10 3v2y_A Sphingosine 1-phosphate 100.0 7.9E-43 2.7E-47 359.7 30.9 193 39-237 56-250 (520)
11 4dkl_A MU-type opioid receptor 100.0 2.6E-43 8.8E-48 358.7 24.6 198 43-243 14-218 (464)
12 3odu_A C-X-C chemokine recepto 100.0 1.2E-44 4E-49 372.5 13.6 204 36-243 38-246 (502)
13 2z73_A Rhodopsin; visual pigme 100.0 8.8E-42 3E-46 345.9 31.9 298 40-500 28-332 (448)
14 2ks9_A Substance-P receptor; w 100.0 3.3E-42 1.1E-46 339.4 27.2 292 38-504 24-326 (364)
15 4amj_A Beta-1 adrenergic recep 100.0 8.8E-43 3E-47 336.0 22.4 295 41-505 6-306 (315)
16 2lnl_A C-X-C chemokine recepto 100.0 1.7E-41 5.7E-46 324.4 26.4 273 43-501 8-295 (296)
17 3sn6_R Lysozyme, beta-2 adrene 100.0 1.3E-41 4.4E-46 350.5 25.5 313 41-504 177-495 (514)
18 4ea3_A Fusion protein of nocic 100.0 5.8E-41 2E-45 338.3 25.1 287 41-505 120-415 (434)
19 2koe_A Human cannabinoid recep 98.6 2.5E-09 8.7E-14 67.1 -0.6 37 464-500 2-38 (40)
20 1hll_A Alpha-2A adrenergic rec 98.5 5E-08 1.7E-12 57.6 2.1 31 132-162 2-32 (32)
21 2ki9_A Cannabinoid receptor 2; 98.0 1.1E-06 3.8E-11 51.9 0.1 30 425-454 2-31 (33)
22 2lot_A Apelin receptor; membra 95.9 0.00064 2.2E-08 46.1 -1.6 30 48-77 30-59 (64)
23 2z73_A Rhodopsin; visual pigme 91.0 10 0.00035 36.8 17.5 29 472-500 308-336 (448)
24 3uon_A Human M2 muscarinic ace 84.0 6.5 0.00022 38.3 11.1 84 422-506 381-464 (467)
25 4eiy_A Adenosine receptor A2A/ 81.4 39 0.0013 32.4 17.0 82 425-506 347-428 (447)
26 2ket_A Cathelicidin-6; antimic 73.9 2.6 9E-05 21.5 2.2 15 488-502 4-18 (27)
27 3sn6_R Lysozyme, beta-2 adrene 55.0 1.6E+02 0.0055 28.8 14.8 29 476-505 464-492 (514)
28 3rze_A Histamine H1 receptor, 50.2 28 0.00095 33.5 6.7 85 420-505 364-448 (452)
29 3eml_A Human adenosine A2A rec 33.4 3.2E+02 0.011 26.0 17.0 88 419-506 385-473 (488)
30 3pbl_A D(3) dopamine receptor, 32.3 3.3E+02 0.011 25.8 14.7 25 216-240 445-469 (481)
31 4dkl_A MU-type opioid receptor 28.3 3.8E+02 0.013 25.2 14.9 84 420-503 374-459 (464)
32 2rdd_B UPF0092 membrane protei 26.8 98 0.0034 17.9 4.0 24 216-239 6-30 (37)
33 3arc_I Photosystem II reaction 25.8 46 0.0016 19.3 2.1 17 48-64 10-26 (38)
No 1
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=100.00 E-value=7.8e-52 Score=425.73 Aligned_cols=203 Identities=19% Similarity=0.331 Sum_probs=168.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--Ccccc
Q psy461 40 SVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLR---IVQNFFIVSLAVADLTVAIFVLPLSLIYYLS--GRWIF 114 (507)
Q Consensus 40 ~~~~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr---~~~~~ll~~LaisDll~~~~~~p~~i~~~~~--~~~~~ 114 (507)
+...+..++..++|++++++|++||+++++++.+.+++| +++|+|++|||++|++++++.+|+.+...+. +.|.+
T Consensus 26 ~~~~~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~ 105 (510)
T 4grv_A 26 NTDIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAF 105 (510)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSS
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEh
Confidence 345567888899999999999999999999999876554 7889999999999999999999999887654 56999
Q ss_pred cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCcc---
Q psy461 115 GIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEV--- 191 (507)
Q Consensus 115 ~~~~C~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~--- 191 (507)
|+.+|++..++..++..+|++++++||+|||+||++|++|+..+|++++..+++++|++++++++|++++++.....
T Consensus 106 g~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~ 185 (510)
T 4grv_A 106 GDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADG 185 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877643222
Q ss_pred -ccCCCccccCC----cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy461 192 -FEADTPCQLTQ----QRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAK 242 (507)
Q Consensus 192 -~~~~~~c~~~~----~~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~ 242 (507)
......|.... ...|..+..++.|++|+++|+++|++|++.++++.+....
T Consensus 186 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~~~~~ 241 (510)
T 4grv_A 186 THPGGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIFEM 241 (510)
T ss_dssp CCGGGEEEEECSCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCTHHHH
T ss_pred CCCCccccccccccchhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 11222354433 2335566667788999999999999999999987655443
No 2
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=100.00 E-value=9.7e-45 Score=372.42 Aligned_cols=198 Identities=35% Similarity=0.663 Sum_probs=168.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHHHH
Q psy461 43 EWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIW 122 (507)
Q Consensus 43 ~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~ 122 (507)
+.+.++..+++++++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|+.+...+.+.|.++...|++.
T Consensus 37 ~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~~~~C~~~ 116 (500)
T 2rh1_A 37 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW 116 (500)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCcchhhHH
Confidence 45667788999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHh-hccccccCCCcc---cc-CCCc
Q psy461 123 LTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISS-PPLIGWNDWPEV---FE-ADTP 197 (507)
Q Consensus 123 ~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~-~~~~~~~~~~~~---~~-~~~~ 197 (507)
.++..++..+|++++++||+|||++|++|++|+..++++++..+++++|++++++++ |.++.+...... .+ ....
T Consensus 117 ~~~~~~~~~~Si~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~p~~~~~~~~~~~~~~~c~~~~~ 196 (500)
T 2rh1_A 117 TSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEET 196 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHeeccCcCCeeecccceeehhhHHHHHHHHHHhcchheeeecccccCcceeccccc
Confidence 999999999999999999999999999999999999999999999999999999986 444443322110 00 0112
Q ss_pred c-ccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 198 C-QLTQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDR 240 (507)
Q Consensus 198 c-~~~~~~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~ 240 (507)
| .......|.++..++.+++|+++++++|++|++.++++.++.
T Consensus 197 ~~~~~~~~~y~~~~~~~~~~iPl~ii~~~Y~~I~~~l~~~~~~~ 240 (500)
T 2rh1_A 197 CCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIF 240 (500)
T ss_dssp CCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCSHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 233345566777778889999999999999999999987663
No 3
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.9e-45 Score=376.55 Aligned_cols=201 Identities=23% Similarity=0.356 Sum_probs=164.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CcccccchhH
Q psy461 41 VPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLS-GRWIFGIIIC 119 (507)
Q Consensus 41 ~~~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~-~~~~~~~~~C 119 (507)
.+++..++..+++++++++|++||+++++++.+++++|+++|+|++|||++|++++++ +|..+...+. +.|.++...|
T Consensus 15 ~~~~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~-~~~~~~~~~~~~~~~~~~~~C 93 (484)
T 3vw7_A 15 TSSWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSV-LPFKISYYFSGSDWQFGSELC 93 (484)
T ss_dssp TCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTT-HHHHHHHHHTTSCCCSCHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcccchhHH
Confidence 3466778889999999999999999999999999999999999999999999999765 5555555444 5899999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCccc
Q psy461 120 KIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQ 199 (507)
Q Consensus 120 ~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~ 199 (507)
++..++..++..+|++++++||+|||++|++|++|+..++++++..+++++|++++++++|+++++..+.........|.
T Consensus 94 ~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~C~ 173 (484)
T 3vw7_A 94 RFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQTIQVPGLGITTCH 173 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHTSCCEEEETTTTEEEES
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHheEEEcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999887765432222333465
Q ss_pred cCCcc----h----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy461 200 LTQQR----G----YVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAK 242 (507)
Q Consensus 200 ~~~~~----~----~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~ 242 (507)
..+.. . |..+..++.+++|+++++++|++|++.++++.++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~l~~~~~~~~~ 224 (484)
T 3vw7_A 174 DVLSETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSANIFEM 224 (484)
T ss_dssp SSCSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred ccCCccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhHHHHh
Confidence 43321 1 4455567788999999999999999999987765443
No 4
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=100.00 E-value=5.7e-45 Score=371.34 Aligned_cols=200 Identities=33% Similarity=0.621 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHHHHH
Q psy461 44 WEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWL 123 (507)
Q Consensus 44 ~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~ 123 (507)
...++..+++++++++|++||+++++++.+++++|+++++|+++||++|++++++.+|..+.....+.|.++...|++..
T Consensus 21 ~~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~ 100 (467)
T 3uon_A 21 FEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWL 100 (467)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchHhHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCc-cccCCCccccCC
Q psy461 124 TSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPE-VFEADTPCQLTQ 202 (507)
Q Consensus 124 ~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~-~~~~~~~c~~~~ 202 (507)
++..++..+|++++++||+|||++|++|++|+..++++++..+++++|++++++++|+++++..+.. .......|....
T Consensus 101 ~~~~~~~~~s~~~l~~isidRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 180 (467)
T 3uon_A 101 ALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQF 180 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCSSCCCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCcceeec
Confidence 9999999999999999999999999999999999999999999999999999999998877553211 123344576543
Q ss_pred --cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy461 203 --QRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKA 243 (507)
Q Consensus 203 --~~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~ 243 (507)
...|..+..++.+++|+++++++|++|++.++++.++....
T Consensus 181 ~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~ 223 (467)
T 3uon_A 181 FSNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEML 223 (467)
T ss_dssp GGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 34456667778889999999999999999999887665544
No 5
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=100.00 E-value=9.3e-44 Score=364.37 Aligned_cols=197 Identities=28% Similarity=0.450 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHHHHHH
Q psy461 45 EAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWLT 124 (507)
Q Consensus 45 ~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~~~ 124 (507)
...+..+++++++++|++||+++++++.+++++|+++++|+++||++|++++++.+|+.+.... .|.++...|++..+
T Consensus 20 ~~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~--~~~~~~~~C~~~~~ 97 (488)
T 3eml_A 20 GSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST--GFCAACHGCLFIAC 97 (488)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHTT--CCEECHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccccchHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999998876543 67888899999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCcc---ccCCCccccC
Q psy461 125 SDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEV---FEADTPCQLT 201 (507)
Q Consensus 125 ~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~---~~~~~~c~~~ 201 (507)
+..++..+|++++++||+|||++|++|++|+..++++++..+++++|++++++++|+++++..+... ......|...
T Consensus 98 ~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 177 (488)
T 3eml_A 98 FVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEG 177 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCGGGSTTTSCHHHHHHHHHHHHHHHHHHHTTGGGTCCSSCC-------CCSSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhheeEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999887754332 1122334432
Q ss_pred C----------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy461 202 Q----------QRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKA 243 (507)
Q Consensus 202 ~----------~~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~ 243 (507)
. ...+..+..++.+++|+++++++|++|++.++++.++....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~y~~I~~~l~~~~~~~~~~ 229 (488)
T 3eml_A 178 QVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEML 229 (488)
T ss_dssp CEECCHHHHSCHHHHHTTTHHHHTHHHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred cceeeccccccchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 2 12234445677789999999999999999999887665544
No 6
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=100.00 E-value=7.5e-45 Score=368.31 Aligned_cols=391 Identities=23% Similarity=0.367 Sum_probs=249.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhH
Q psy461 40 SVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIIC 119 (507)
Q Consensus 40 ~~~~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C 119 (507)
..+.....+..+++++++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|..+... ..|..+...|
T Consensus 25 ~~~~~~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~--~~~~~~~~~C 102 (447)
T 4eiy_A 25 APPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGC 102 (447)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH--TTCEEEHHHH
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccCccHH
Confidence 34556778889999999999999999999999999999999999999999999999999999887644 3577788999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccc---cCCC
Q psy461 120 KIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVF---EADT 196 (507)
Q Consensus 120 ~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~---~~~~ 196 (507)
++..++..++..+|++++++||+|||++|++|++|+..++++++..+++++|++++++++|+++++..+.... ....
T Consensus 103 ~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~Wi~s~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (447)
T 4eiy_A 103 LFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQ 182 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHHHHHHHHHHHHHHTGGGGTCSSTTSCCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHeEEecccccchhhhHHHHHHHHhHHHHHHHHHHHhhhheeccccccCccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998776543211 1111
Q ss_pred ccccC-------C---cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhcccccccccccccCCCC
Q psy461 197 PCQLT-------Q---QRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLE 266 (507)
Q Consensus 197 ~c~~~-------~---~~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (507)
.|... . ...+..+..++.+++|+++++++|++|++.++++.++.....+............ .
T Consensus 183 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~ 254 (447)
T 4eiy_A 183 GCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKA--------D 254 (447)
T ss_dssp TCCTTEEECCHHHHSCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------C
T ss_pred cccccchhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhccCcCcCCcc--------c
Confidence 23221 1 1112223344567999999999999999999999887654322111100000000 0
Q ss_pred CCCccccCCCCCCccccccccccchhhcccCCCCCCCcccccccc-ccCCccc--cccccccchhccccCCCCccceeec
Q psy461 267 PESISSENDTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLI-NEDSMTD--IQDLSSSSNKIAARNDNMGEFVHIN 343 (507)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (507)
...+...............+.............. ..+.... ....++.........
T Consensus 255 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 313 (447)
T 4eiy_A 255 -----------NAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLAN---------- 313 (447)
T ss_dssp -----------SHHHHHHHHHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred -----------cchhhhccchhhhccCCCCCCCCCCCCcCCCCCCcccccccCCCCCCCCccchhhhhcc----------
Confidence 0000000000000000000000000000000000 0000000 000000000000000
Q ss_pred CCCccccccccccccccccccCCCCCCCCCCCCcCCCCCCCCCccccccccccchhhccCCChhhHHHHHHHHHhhhhHH
Q psy461 344 NNETTFTNKTISDDISLASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSK 423 (507)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (507)
.+...............+....+...++.++..++
T Consensus 314 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (447)
T 4eiy_A 314 ---------------------------------------------EGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQK 348 (447)
T ss_dssp ---------------------------------------------TTCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------cCCcCcccchhhhhcccccchhhccccchhHHHHH
Confidence 00000000000000000111111223344455678
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHhhccccCC-ccCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHHHhhh
Q psy461 424 ERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDT-CCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLNKVS 502 (507)
Q Consensus 424 ~~r~~k~l~~i~~~f~i~w~P~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~~~~~ 502 (507)
++|++||+++++++|++||+|+.++.++..+.++ ......+..++.+|+++|+++||+||+++|++||++++++++|.+
T Consensus 349 ~~r~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~~~ 428 (447)
T 4eiy_A 349 EVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHV 428 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhhhheeccHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHhccchhhhHhccHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999888776554 345566778889999999999999999999999999999999887
Q ss_pred hccc
Q psy461 503 LSRE 506 (507)
Q Consensus 503 ~~~~ 506 (507)
++++
T Consensus 429 ~r~~ 432 (447)
T 4eiy_A 429 LRQQ 432 (447)
T ss_dssp ----
T ss_pred hccC
Confidence 7654
No 7
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=100.00 E-value=7.7e-44 Score=364.41 Aligned_cols=190 Identities=38% Similarity=0.721 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CcccccchhHHHHH
Q psy461 45 EAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLS-GRWIFGIIICKIWL 123 (507)
Q Consensus 45 ~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~-~~~~~~~~~C~~~~ 123 (507)
...+..+++++++++|++||+++++++.+++++|+++|+|+++||++|++++++.+|..+...+. +.|.++...|++..
T Consensus 37 ~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~ 116 (481)
T 3pbl_A 37 PHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFV 116 (481)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcchhhhHH
Confidence 45667788999999999999999999999999999999999999999999999999998877766 67999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhccccc---ccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCcccc
Q psy461 124 TSDVLCCTASILNLCAIALDRYWAITDPLVY---AQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQL 200 (507)
Q Consensus 124 ~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y---~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~ 200 (507)
++..++..+|++++++||+|||++|++|++| ....+.+++..+++++|++++++++|+++++... .....|..
T Consensus 117 ~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~----~~~~~C~~ 192 (481)
T 3pbl_A 117 TLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTT----GDPTVCSI 192 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCCC----SSTTCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHheeccc----CCCCcccc
Confidence 9999999999999999999999999999999 5678889999999999999999999998876643 33445766
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 201 TQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRD 239 (507)
Q Consensus 201 ~~~~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~ 239 (507)
... .|..+..++.+++|+++++++|++|++.++++.++
T Consensus 193 ~~~-~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~ 230 (481)
T 3pbl_A 193 SNP-DFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRK 230 (481)
T ss_dssp CCH-HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred cCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 543 36667778889999999999999999999876543
No 8
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=100.00 E-value=3.9e-44 Score=363.63 Aligned_cols=201 Identities=28% Similarity=0.486 Sum_probs=169.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHHHH
Q psy461 43 EWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIW 122 (507)
Q Consensus 43 ~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~ 122 (507)
+...++..+++++++++|++||+++++++.+++++|+++|+|+++||++|++.+++.+|..+...+.+.|.++...|++.
T Consensus 5 ~~~~~~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~ 84 (452)
T 3rze_A 5 SPQLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFW 84 (452)
T ss_dssp ----CGGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhHhHH
Confidence 34556678899999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCc-cccCCCccccC
Q psy461 123 LTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPE-VFEADTPCQLT 201 (507)
Q Consensus 123 ~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~-~~~~~~~c~~~ 201 (507)
.++..++..+|++++++||+|||++|++|++|+..++++++..+++++|++++++++|.+........ .......|...
T Consensus 85 ~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~C~~~ 164 (452)
T 3rze_A 85 LSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIPILGWNHFMQQTSVRREDKCETD 164 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTTTSSHHHHHHHHHHHHHHHGGGHHHHHCCCC-------CCSSSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheeCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCeecCC
Confidence 99999999999999999999999999999999999999999999999999999998885433222111 12234456544
Q ss_pred C--cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy461 202 Q--QRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKA 243 (507)
Q Consensus 202 ~--~~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~ 243 (507)
. ...|..+..++.+++|+++++++|++|++.++++.++....
T Consensus 165 ~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~ 208 (452)
T 3rze_A 165 FYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEML 208 (452)
T ss_dssp CTTCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSCCCCCHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHh
Confidence 3 34466677778889999999999999999998876664443
No 9
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=100.00 E-value=1.7e-43 Score=346.30 Aligned_cols=292 Identities=20% Similarity=0.385 Sum_probs=240.2
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccc
Q psy461 37 IEYSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGI 116 (507)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~ 116 (507)
.....+++...+..+++.+++++|++||+++++++.+++++|+++|+|+++||++|++.+++.+|..+.....+.|.++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~ 108 (349)
T 1u19_A 29 QYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGP 108 (349)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCCh
Confidence 33445677788899999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCC
Q psy461 117 IICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADT 196 (507)
Q Consensus 117 ~~C~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~ 196 (507)
..|++..++..++..+|++++++||+|||++|++|++|+. ++++++..+++++|++++++++|+++++..+.. .....
T Consensus 109 ~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~-~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~-~~~~~ 186 (349)
T 1u19_A 109 TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPLVGWSRYIP-EGMQC 186 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCC-CCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEE-ETTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccee-eccchhHHHHHHHHHHHHHHHHHHHHheeeeec-cCCce
Confidence 9999999999999999999999999999999999999876 788999999999999999999999887754422 12233
Q ss_pred ccccCC--------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhcccccccccccccCCCCCC
Q psy461 197 PCQLTQ--------QRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPE 268 (507)
Q Consensus 197 ~c~~~~--------~~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (507)
.|...+ ...|..+..++.+++|+++++++|++|++.++++.++..
T Consensus 187 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~--------------------------- 239 (349)
T 1u19_A 187 SCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQ--------------------------- 239 (349)
T ss_dssp EEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSC---------------------------
T ss_pred eecccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc---------------------------
Confidence 454432 223445556667799999999999999876654311000
Q ss_pred CccccCCCCCCccccccccccchhhcccCCCCCCCccccccccccCCccccccccccchhccccCCCCccceeecCCCcc
Q psy461 269 SISSENDTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARNDNMGEFVHINNNETT 348 (507)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (507)
T Consensus 240 -------------------------------------------------------------------------------- 239 (349)
T 1u19_A 240 -------------------------------------------------------------------------------- 239 (349)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccCCCCCCCCCCCCcCCCCCCCCCccccccccccchhhccCCChhhHHHHHHHHHhhhhHHHHHHH
Q psy461 349 FTNKTISDDISLASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAA 428 (507)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 428 (507)
.+....++++|++
T Consensus 240 -------------------------------------------------------------------~~~~~~~~~~~~~ 252 (349)
T 1u19_A 240 -------------------------------------------------------------------ESATTQKAEKEVT 252 (349)
T ss_dssp -------------------------------------------------------------------SSSHHHHHHHHHH
T ss_pred -------------------------------------------------------------------cchhhHHHHHHHH
Confidence 0001135667899
Q ss_pred HHHHHHHHHHHhhchhHHHHHhhccccCCccCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHHHhhhhc
Q psy461 429 RTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLNKVSLS 504 (507)
Q Consensus 429 k~l~~i~~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~~~~~~~ 504 (507)
|++++++++|++||+|+.+..++.....+......+..+..++.++|+++||+||+++|++||++++++++|.+++
T Consensus 253 ~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nPiiY~~~~~~fR~~~~~~~~c~~~~ 328 (349)
T 1u19_A 253 RMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNP 328 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhheecCCcccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHhcccCCC
Confidence 9999999999999999999887766554444555677788899999999999999999999999999999766543
No 10
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=100.00 E-value=7.9e-43 Score=359.71 Aligned_cols=193 Identities=20% Similarity=0.305 Sum_probs=161.7
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchh
Q psy461 39 YSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIII 118 (507)
Q Consensus 39 ~~~~~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~ 118 (507)
.+.++....+..+++++++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|..+.. ....|.++...
T Consensus 56 ~~~~~~~~~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~-~~~~~~~~~~~ 134 (520)
T 3v2y_A 56 SADKENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS-GATTYKLTPAQ 134 (520)
T ss_dssp GGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGGTTSCHHH
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cccceeeCccc
Confidence 34455556888999999999999999999999999999999999999999999999999888877766 55678889999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCcc
Q psy461 119 CKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPC 198 (507)
Q Consensus 119 C~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c 198 (507)
|++..++..++..+|++++++||+|||+||+ |++|+..++++++..+++++|++++++++|+++++..+ ++...|
T Consensus 135 c~~~~~~~~~~~~~S~~~l~~isidRy~aI~-p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~----~~~~~C 209 (520)
T 3v2y_A 135 WFLREGSMFVALSASVFSLLAIAIERYITML-KMKLHNGSNNFRLFLLISACWVISLILGGLPIMGWNCI----SALSSC 209 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C-------CCHHHHHHHHHHHHHHHHHHHTTTTTCBCT----TCGGGB
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhEEe-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHeeccc----cCCCcc
Confidence 9999999999999999999999999999999 99999999999999999999999999999999988765 334467
Q ss_pred ccCC--cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 199 QLTQ--QRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRL 237 (507)
Q Consensus 199 ~~~~--~~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~ 237 (507)
...+ ...++.+..++.|++|+++++++|++|++.++++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~lPl~ii~~~Y~~I~~~l~~~~ 250 (520)
T 3v2y_A 210 STVLPLYHKHYILFCTTVFTLLLLSIVILYCRIYSLVRTRN 250 (520)
T ss_dssp CSSSTTBBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6654 22333444556789999999999999999999886
No 11
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=100.00 E-value=2.6e-43 Score=358.73 Aligned_cols=198 Identities=27% Similarity=0.435 Sum_probs=170.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHHHH
Q psy461 43 EWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIW 122 (507)
Q Consensus 43 ~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~ 122 (507)
....++..+++++++++|++||+++++++.+++++|+++|+|+++||++|++++++ +|+.+...+.+.|.++...|++.
T Consensus 14 ~~~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~~~~~~~~~C~~~ 92 (464)
T 4dkl_A 14 MVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLMGTWPFGNILCKIV 92 (464)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCCSCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcccccchhhhH
Confidence 34568888999999999999999999999999999999999999999999999876 99999888889999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCccccCC
Q psy461 123 LTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQLTQ 202 (507)
Q Consensus 123 ~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 202 (507)
.++..++..+|++++++||+|||++|++|++|+..++++++..+++++|++++++++|+++..... .......|...+
T Consensus 93 ~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~--~~~~~~~c~~~~ 170 (464)
T 4dkl_A 93 ISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTK--YRQGSIDCTLTF 170 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHSBCCE--EETTEEECCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHhHHhHHHHHHHHHHHHHHHHHheeec--ccCCCceEEeec
Confidence 999999999999999999999999999999999999999999999999999999999988754432 223334454433
Q ss_pred c-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy461 203 Q-------RGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKA 243 (507)
Q Consensus 203 ~-------~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~ 243 (507)
. ..|..+..++.+++|+++++++|++|++.++++.++....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~l~~~~~~~~~~ 218 (464)
T 4dkl_A 171 SHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRNIFEML 218 (464)
T ss_dssp SSSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCCCCSHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhh
Confidence 2 2244556667789999999999999999998876655444
No 12
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=100.00 E-value=1.2e-44 Score=372.51 Aligned_cols=204 Identities=20% Similarity=0.269 Sum_probs=173.1
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccccc
Q psy461 36 NIEYSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFG 115 (507)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~ 115 (507)
....+...+..++..+++++++++|++||+++++++.+++++|+++|+|++|||++|++++ +.+|+.+..... .|.++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~-~~~p~~~~~~~~-~~~~~ 115 (502)
T 3odu_A 38 CFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAVA-NWYFG 115 (502)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHHT-CCCSH
T ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-CCcCC
Confidence 4445566778899999999999999999999999999999999999999999999999995 678888776654 69999
Q ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCC
Q psy461 116 IIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEAD 195 (507)
Q Consensus 116 ~~~C~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~ 195 (507)
...|++..++..++..+|++++++||+|||++|++|++|+..++++++..+++++|++++++++|+++...... .+..
T Consensus 116 ~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~--~~~~ 193 (502)
T 3odu_A 116 NFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSE--ADDR 193 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHTHHHHHTHHHHHHTTHHHHHHEEEEE--CSSS
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheecccccccccchhHHHHhhhHHHHHHHHHHHHHHHheeeec--cCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999887655322 2334
Q ss_pred CccccCCc-----chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy461 196 TPCQLTQQ-----RGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKA 243 (507)
Q Consensus 196 ~~c~~~~~-----~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~ 243 (507)
..|...+. ..|.++..++.+++|+++++++|++|++.++++.++....
T Consensus 194 ~~C~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~ 246 (502)
T 3odu_A 194 YICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEM 246 (502)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHGGGCSCCHHHH
T ss_pred eEEeecCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhh
Confidence 45654332 2244455667789999999999999999999876665443
No 13
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=100.00 E-value=8.8e-42 Score=345.90 Aligned_cols=298 Identities=23% Similarity=0.386 Sum_probs=245.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCcccccchh
Q psy461 40 SVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFV-LPLSLIYYLSGRWIFGIII 118 (507)
Q Consensus 40 ~~~~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~-~p~~i~~~~~~~~~~~~~~ 118 (507)
..++....+..+++.+++++|++||+++++++.+++++|++.++|+++||++|++.+++. +|..+.....+.|.++...
T Consensus 28 ~~~~~~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~~~ 107 (448)
T 2z73_A 28 QVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAA 107 (448)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCHHH
Confidence 445667788889999999999999999999999999999999999999999999998875 8888888888899999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCcc
Q psy461 119 CKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPC 198 (507)
Q Consensus 119 C~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c 198 (507)
|++..++..++..+|++++++||+|||++|++|++|+..++++++..+++++|++++++++++++.++.+.. ......|
T Consensus 108 C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~-~~~~~~c 186 (448)
T 2z73_A 108 CKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTL-EGVLCNC 186 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTCCCCCHHHHHHHHHHHHHHHHHHHSGGGGTSSCEEE-CTTSSSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceechhHHHHHHHHHHHHHHHHHHHHHhceeeeee-cCCceeE
Confidence 999999999999999999999999999999999999999999999999999999999999998887764322 2233345
Q ss_pred ccCC------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhcccccccccccccCCCCCCCccc
Q psy461 199 QLTQ------QRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPESISS 272 (507)
Q Consensus 199 ~~~~------~~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (507)
...+ ...+..+..++.+++|+++++++|++|++.++++.++..+..+... .
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~-----~------------------ 243 (448)
T 2z73_A 187 SFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLN-----A------------------ 243 (448)
T ss_dssp EECCSCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTC-----C------------------
T ss_pred ecccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----h------------------
Confidence 4432 1224444555667999999999999999999998887665410000 0
Q ss_pred cCCCCCCccccccccccchhhcccCCCCCCCccccccccccCCccccccccccchhccccCCCCccceeecCCCcccccc
Q psy461 273 ENDTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARNDNMGEFVHINNNETTFTNK 352 (507)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (507)
T Consensus 244 -------------------------------------------------------------------------------- 243 (448)
T 2z73_A 244 -------------------------------------------------------------------------------- 243 (448)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCCCCCCCCCCCcCCCCCCCCCccccccccccchhhccCCChhhHHHHHHHHHhhhhHHHHHHHHHHH
Q psy461 353 TISDDISLASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAARTLG 432 (507)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~l~ 432 (507)
...++.....++++|++|+++
T Consensus 244 -----------------------------------------------------------~~~~~~~~~~~~~~k~~~~l~ 264 (448)
T 2z73_A 244 -----------------------------------------------------------KELRKAQAGANAEMRLAKISI 264 (448)
T ss_dssp -----------------------------------------------------------TTHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------HHHHhhhccccHHHHHHHHHH
Confidence 001122233467889999999
Q ss_pred HHHHHHHhhchhHHHHHhhccccCCccCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHHHh
Q psy461 433 IIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLNK 500 (507)
Q Consensus 433 ~i~~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~~~ 500 (507)
+++++|++||+|+.++.++..+.........+..+..++.++|+++||+||+++|++||+++++++++
T Consensus 265 ~iv~~F~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~ 332 (448)
T 2z73_A 265 VIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPW 332 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHGGGSHHHHHHHHCHHHHHHHHHHCGG
T ss_pred HHHHHHHHHhHHHHHHHHHHHhCCcccCChHHHHHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999998887665444445566777889999999999999999999999999999964
No 14
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=100.00 E-value=3.3e-42 Score=339.35 Aligned_cols=292 Identities=22% Similarity=0.469 Sum_probs=234.8
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccch
Q psy461 38 EYSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGII 117 (507)
Q Consensus 38 ~~~~~~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~ 117 (507)
+...+++...+..+++.+++++|++||+++++++.+++++|+++|+|+++||++|++.+++.+|..+.....+.|.+++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~ 103 (364)
T 2ks9_A 24 QFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLF 103 (364)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHH
T ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHH
Confidence 34456677777789999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCc
Q psy461 118 ICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTP 197 (507)
Q Consensus 118 ~C~~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~ 197 (507)
.|++..++..++..+|++++++||+|||++|++|++|+ .+++++..+++++|++++++++|.++..... .......
T Consensus 104 ~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~--~~~~~~~~~i~~~W~~s~~~~~p~~~~~~~~--~~~~~~~ 179 (364)
T 2ks9_A 104 YCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPR--LSATATKVVICVIWVLALLLAFPQGYYSTTE--TMPSRVV 179 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTS--CCHHHHHHHHHHHHHHHHHHHTTTTTTSCCC--BCTTCSS
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccchHHHHHHHHHHHHHHHHhHHHHHhhhe--ecCCCCE
Confidence 99999999999999999999999999999999999875 6888999999999999999999876543321 1233444
Q ss_pred cccCCc--------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhcccccccccccccCCCCCCC
Q psy461 198 CQLTQQ--------RGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPES 269 (507)
Q Consensus 198 c~~~~~--------~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (507)
|...+. ..|.....++.+++|+++++++|.+|++.++++.++....
T Consensus 180 C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~i~~~l~~~~~~~~~~-------------------------- 233 (364)
T 2ks9_A 180 CMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSS-------------------------- 233 (364)
T ss_dssp BCCCCSCCCTTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSCSCCCSSSSS--------------------------
T ss_pred EeecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc--------------------------
Confidence 654321 2345556667789999999999999988665321000000
Q ss_pred ccccCCCCCCccccccccccchhhcccCCCCCCCccccccccccCCccccccccccchhccccCCCCccceeecCCCccc
Q psy461 270 ISSENDTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARNDNMGEFVHINNNETTF 349 (507)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (507)
T Consensus 234 -------------------------------------------------------------------------------- 233 (364)
T 2ks9_A 234 -------------------------------------------------------------------------------- 233 (364)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccCCCCCCCCCCCCcCCCCCCCCCccccccccccchhhccCCChhhHHHHHHHHHhhhhHHHHHHHH
Q psy461 350 TNKTISDDISLASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAAR 429 (507)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k 429 (507)
.+.+++.++++|++|
T Consensus 234 -----------------------------------------------------------------~~~~~~~~~~~k~~~ 248 (364)
T 2ks9_A 234 -----------------------------------------------------------------DRYHEQVSAKRKVVK 248 (364)
T ss_dssp -----------------------------------------------------------------SCSSHHHHHHHHHHH
T ss_pred -----------------------------------------------------------------hhhhhhHHhhhhHHH
Confidence 000112356789999
Q ss_pred HHHHHHHHHHhhchhHHHHHhhccccCCc---cCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHHHhhhhc
Q psy461 430 TLGIIMGVFVFCWLPFFLMYVSLPFCDTC---CMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLNKVSLS 504 (507)
Q Consensus 430 ~l~~i~~~f~i~w~P~~i~~~~~~~~~~~---~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~~~~~~~ 504 (507)
++++++++|++||+|+.+..++..+..+. .....++.+..+++++|+++||+||+++|++||++++++++|+++.
T Consensus 249 ~~~~v~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~~~ 326 (364)
T 2ks9_A 249 MMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPFI 326 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCC
Confidence 99999999999999999988876654332 2234566678889999999999999999999999999999875543
No 15
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=100.00 E-value=8.8e-43 Score=336.03 Aligned_cols=295 Identities=38% Similarity=0.682 Sum_probs=236.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHH
Q psy461 41 VPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICK 120 (507)
Q Consensus 41 ~~~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~ 120 (507)
.++....+..+++.+++++|++||+++++++.+++++|+++|+|++|||++|++.+++.+|..+.....+.|.+++..|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~ 85 (315)
T 4amj_A 6 LSQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCE 85 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCSCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCeeccccHHH
Confidence 34556788889999999999999999999999999999999999999999999999889999999888899999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccc------cC
Q psy461 121 IWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVF------EA 194 (507)
Q Consensus 121 ~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~------~~ 194 (507)
+..++..++..+|++++++||+|||++|++|++|+..++++++..+++++|++++++++++++......... ..
T Consensus 86 ~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 165 (315)
T 4amj_A 86 LWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQD 165 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhHHHhhhHHHHHHHHHHHHHHHHHhccccCCCccccccc
Confidence 999999999999999999999999999999999999999999999999999999999988776543322110 11
Q ss_pred CCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhcccccccccccccCCCCCCCccccC
Q psy461 195 DTPCQLTQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPESISSEN 274 (507)
Q Consensus 195 ~~~c~~~~~~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (507)
...|.......|.....++.+++|+++++++|.+|++.++++.++.....+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~~~~~~~~~~~~~~----------------------------- 216 (315)
T 4amj_A 166 PGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASK----------------------------- 216 (315)
T ss_dssp TTCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTC--------------------------------------
T ss_pred cccchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc-----------------------------
Confidence 112233344556666666778999999999999999999877654332200
Q ss_pred CCCCCccccccccccchhhcccCCCCCCCccccccccccCCccccccccccchhccccCCCCccceeecCCCcccccccc
Q psy461 275 DTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARNDNMGEFVHINNNETTFTNKTI 354 (507)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (507)
T Consensus 217 -------------------------------------------------------------------------------- 216 (315)
T 4amj_A 217 -------------------------------------------------------------------------------- 216 (315)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCCCCCCCCCCcCCCCCCCCCccccccccccchhhccCCChhhHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy461 355 SDDISLASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAARTLGII 434 (507)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~l~~i 434 (507)
++.++...++++|++|+++++
T Consensus 217 -----------------------------------------------------------~~~~~~~~~~~~k~~~~~~~~ 237 (315)
T 4amj_A 217 -----------------------------------------------------------RKTSRVMLMREHKALKTLGII 237 (315)
T ss_dssp --------------------------------------------------------------CHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------cccchhhhhhhhhHHHHHHHH
Confidence 011122345788999999999
Q ss_pred HHHHHhhchhHHHHHhhccccCCccCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHHHhhhhcc
Q psy461 435 MGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLNKVSLSR 505 (507)
Q Consensus 435 ~~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~~~~~~~~ 505 (507)
+++|++||+|+.+..++..+..+ .....+..+..++.++|+++||+||+ +|++||++++++++|.+.++
T Consensus 238 ~~~f~i~~~P~~i~~~~~~~~~~-~~~~~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~~~~~l~~~~~~~ 306 (315)
T 4amj_A 238 MGVFTLCWLPFFLVNIVNVFNRD-LVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFPRKAD 306 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-SSCHHHHHHHHHHHHHGGGTHHHHGG-GSHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhccccHHHHc-CcHHHHHHHHHHhCCCCcch
Confidence 99999999999999888766543 34466777888899999999999999 99999999999998766544
No 16
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=100.00 E-value=1.7e-41 Score=324.42 Aligned_cols=273 Identities=24% Similarity=0.423 Sum_probs=219.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHHHH
Q psy461 43 EWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIW 122 (507)
Q Consensus 43 ~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~~~ 122 (507)
+....+..++|.+++++|++||+++++++.++|++|+++|+|++|||++|+++++ .+|..+.... ..|..++..|++.
T Consensus 8 ~~~~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l-~~p~~~~~~~-~~~~~~~~~c~~~ 85 (296)
T 2lnl_A 8 TLNKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFAL-TLPIWAASKV-NGWIFGTFLCKVV 85 (296)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHH-HHHHHHHHHH-SSSCCSSHHHHHH
T ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHH-hhhHHHhhcc-CCCccchhHHHHH
Confidence 4456788899999999999999999999999999999999999999999999976 5676665554 5699999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCcccc--
Q psy461 123 LTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQL-- 200 (507)
Q Consensus 123 ~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~-- 200 (507)
.++..++..+|++++++||+|||++|++|++|+...+ +++..+++++|+++++.++|+.+++..+.........+..
T Consensus 86 ~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~~-~~~~~~~~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 164 (296)
T 2lnl_A 86 SLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKR-HLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNSSPVCYEVLG 164 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSSSCCHH-HHHHHHHHHHHHHHHHHHHHHHHTSSCCCCCTTSCCCCSCCS
T ss_pred hhhhhhhHHHHHHHHHHHHhhhhhhhhhccccchhhh-hhhHheehHHHHHHHHHhcchhhcceeecCCCCCceeeeecc
Confidence 9999999999999999999999999999999876554 6677788899999999999988877654332222111111
Q ss_pred ----CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhcccccccccccccCCCCCCCccccCCC
Q psy461 201 ----TQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPESISSENDT 276 (507)
Q Consensus 201 ----~~~~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (507)
.....+..+...+.+++|+.++.++|.++.+.++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~---------------------------------------- 204 (296)
T 2lnl_A 165 NDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKA---------------------------------------- 204 (296)
T ss_dssp CCTTTTTTHHHHTTTHHHHHHHHHHHHHHHHHHTTTSSSC----------------------------------------
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------
Confidence 112335555667788999999999999875432110
Q ss_pred CCCccccccccccchhhcccCCCCCCCccccccccccCCccccccccccchhccccCCCCccceeecCCCcccccccccc
Q psy461 277 KSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARNDNMGEFVHINNNETTFTNKTISD 356 (507)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (507)
T Consensus 205 -------------------------------------------------------------------------------- 204 (296)
T 2lnl_A 205 -------------------------------------------------------------------------------- 204 (296)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCCCCCCCcCCCCCCCCCccccccccccchhhccCCChhhHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy461 357 DISLASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAARTLGIIMG 436 (507)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~l~~i~~ 436 (507)
..++++|++|+++++++
T Consensus 205 ---------------------------------------------------------------~~~~~~k~~~~~~~v~~ 221 (296)
T 2lnl_A 205 ---------------------------------------------------------------HMGQKHRAMRVIFAVVL 221 (296)
T ss_dssp ---------------------------------------------------------------CCHHHHTHHHHHHHHHH
T ss_pred ---------------------------------------------------------------hhhhhhhHHHHHHHhhh
Confidence 12456789999999999
Q ss_pred HHHhhchhHHHHHhhccccCCcc---------CchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHHHhh
Q psy461 437 VFVFCWLPFFLMYVSLPFCDTCC---------MSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLNKV 501 (507)
Q Consensus 437 ~f~i~w~P~~i~~~~~~~~~~~~---------~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~~~~ 501 (507)
+|++||+|+.+..++..+..... ....++.++.+++++||++||+||+++|++||++++++++|+
T Consensus 222 ~f~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~ll~cr 295 (296)
T 2lnl_A 222 IFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMH 295 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSSCSCHHHHHHHTTHHHHHHHHHGGGGGTHHHHHHHHHCSHHHHHHHHHHHHC
T ss_pred heeeeehHHHHHHHHHHHhccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence 99999999999988766543321 123456678899999999999999999999999999999874
No 17
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=100.00 E-value=1.3e-41 Score=350.53 Aligned_cols=313 Identities=35% Similarity=0.646 Sum_probs=239.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHH
Q psy461 41 VPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICK 120 (507)
Q Consensus 41 ~~~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~ 120 (507)
.++...++..+++.+++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|..+...+.+.|.++...|+
T Consensus 177 ~~~~~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~ 256 (514)
T 3sn6_R 177 ADEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCE 256 (514)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCCSCSHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCeeCCcchhh
Confidence 34456678889999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccc-cccCCCcc-----ccC
Q psy461 121 IWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLI-GWNDWPEV-----FEA 194 (507)
Q Consensus 121 ~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~-~~~~~~~~-----~~~ 194 (507)
+..++..++..+|++++++||+|||++|++|++|+..++++++..+++++|++++++++++++ .+...... ...
T Consensus 257 ~~~~l~~~~~~~S~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~Wi~s~l~~~~p~~~~~~~~~~~~~~~c~~~ 336 (514)
T 3sn6_R 257 FWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAE 336 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCCHHHHHHHHHHHHHHHHHTTHHHHHTTTTC---CHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccchhccchHHHHHHHHHHHHHHHHHhhhhhccceecccCcccceeec
Confidence 999999999999999999999999999999999999999999999999999999998866554 33222111 011
Q ss_pred CCccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhcccccccccccccCCCCCCCccccC
Q psy461 195 DTPCQLTQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPESISSEN 274 (507)
Q Consensus 195 ~~~c~~~~~~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (507)
...|.......|..+..++.+++|+++++++|++|++.++++.++................ +
T Consensus 337 ~~~~~~~~~~~y~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~------------~------ 398 (514)
T 3sn6_R 337 ETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQV------------E------ 398 (514)
T ss_dssp SSCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------------------
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccc------------c------
Confidence 1112233345567777788899999999999999999999988876654110000000000 0
Q ss_pred CCCCCccccccccccchhhcccCCCCCCCccccccccccCCccccccccccchhccccCCCCccceeecCCCcccccccc
Q psy461 275 DTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARNDNMGEFVHINNNETTFTNKTI 354 (507)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (507)
T Consensus 399 -------------------------------------------------------------------------------- 398 (514)
T 3sn6_R 399 -------------------------------------------------------------------------------- 398 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCCCCCCCCCCcCCCCCCCCCccccccccccchhhccCCChhhHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy461 355 SDDISLASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAARTLGII 434 (507)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~l~~i 434 (507)
. ........++..+..++++|++++++++
T Consensus 399 ---------------~------------------------------------~~~~~~~~~~~~~~~~~~~r~~~~l~~i 427 (514)
T 3sn6_R 399 ---------------Q------------------------------------DGRTGHGLRRSSKFCLKEHKALKTLGII 427 (514)
T ss_dssp ------------------------------------------------------------------CHHHHHHHHHHHHH
T ss_pred ---------------c------------------------------------cccccccccchhhhhHHHHHHHHHHHHH
Confidence 0 0000000112233356789999999999
Q ss_pred HHHHHhhchhHHHHHhhccccCCccCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHHHhhhhc
Q psy461 435 MGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLNKVSLS 504 (507)
Q Consensus 435 ~~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~~~~~~~ 504 (507)
+++|++||+|+.++.++..+.+ ......+..+..++.++|+++||+||+ ++++||+++++++||.+..
T Consensus 428 v~~F~lcwlP~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~ns~~NPiIY~-~~~~fR~~~~~~l~~~~~~ 495 (514)
T 3sn6_R 428 MGTFTLCWLPFFIVNIVHVIQD-NLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSS 495 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTTCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHcc-cccchHHHHHHHHHHHHHHhhhHHhhc-CCHHHHHHHHHHhCcCccc
Confidence 9999999999999988776643 334566777888999999999999999 9999999999999776544
No 18
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=100.00 E-value=5.8e-41 Score=338.26 Aligned_cols=287 Identities=23% Similarity=0.415 Sum_probs=220.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccchhHH
Q psy461 41 VPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICK 120 (507)
Q Consensus 41 ~~~~~~~~~~~~~~ii~~~gi~gN~lvi~~i~~~~~lr~~~~~ll~~LaisDll~~~~~~p~~i~~~~~~~~~~~~~~C~ 120 (507)
.+....++..+++++++++|++||+++++++.+++++|+++|+|+++||++|+++ ++.+|..+.....+.|.++...|+
T Consensus 120 ~~~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~ll~~LAvsDll~-~~~~p~~~~~~~~~~~~~~~~~C~ 198 (434)
T 4ea3_A 120 LPLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPFQGTDILLGFWPFGNALCK 198 (434)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHTSCTTHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHeeeeeeecCccCchhHHHHHHHHHHHHHH-HHHhHHHHHHHHhcCCcCcccHHH
Confidence 3556778888999999999999999999999999999999999999999999998 667899998888899999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhhhHHHHHHHHHHHHhhccccccCCCccccCCCcccc
Q psy461 121 IWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQL 200 (507)
Q Consensus 121 ~~~~~~~~~~~~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~ 200 (507)
+..++..++..+|++++++||+|||++|++|++|+..++++++..+++++|++++++++|.++...... ......|..
T Consensus 199 ~~~~~~~~~~~~S~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~--~~~~~~c~~ 276 (434)
T 4ea3_A 199 TVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQV--EDEEIECLV 276 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHEEECC--CSSCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhEEEcccccccccchhhhHHhhhhhhhHHHHHHhhHheeeeeEe--ecCceeEEE
Confidence 999999999999999999999999999999999999999999999999999999999998776543221 122334544
Q ss_pred CCc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhcccccccccccccCCCCCCCcccc
Q psy461 201 TQQ-------RGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPESISSE 273 (507)
Q Consensus 201 ~~~-------~~~~~~~~~~~~~ip~~vi~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (507)
... ..+..+..++.+++|+++++++|++|++.++++.++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~--------------------------------- 323 (434)
T 4ea3_A 277 EIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRLLS--------------------------------- 323 (434)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCSSCS---------------------------------
T ss_pred ecCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---------------------------------
Confidence 321 2244556667789999999999999998775421100
Q ss_pred CCCCCCccccccccccchhhcccCCCCCCCccccccccccCCccccccccccchhccccCCCCccceeecCCCccccccc
Q psy461 274 NDTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARNDNMGEFVHINNNETTFTNKT 353 (507)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (507)
T Consensus 324 -------------------------------------------------------------------------------- 323 (434)
T 4ea3_A 324 -------------------------------------------------------------------------------- 323 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCCCCCCCCCCcCCCCCCCCCccccccccccchhhccCCChhhHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy461 354 ISDDISLASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAARTLGI 433 (507)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~l~~ 433 (507)
....+.++++|+++++++
T Consensus 324 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 341 (434)
T 4ea3_A 324 --------------------------------------------------------------GSREKDRNLRRITRLVLV 341 (434)
T ss_dssp --------------------------------------------------------------SCHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------------cchhhHHHHhHHHHHHHH
Confidence 001123567899999999
Q ss_pred HHHHHHhhchhHHHHHhhccccCCc--cCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHHHhhhhcc
Q psy461 434 IMGVFVFCWLPFFLMYVSLPFCDTC--CMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLNKVSLSR 505 (507)
Q Consensus 434 i~~~f~i~w~P~~i~~~~~~~~~~~--~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~~~~~~~~ 505 (507)
++++|++||+|+.++.++..+.... .....+..++.++.++|+++||+||+++|++||+++++++||.++++
T Consensus 342 vv~~F~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~~~~~fR~~~~~~~~~~~~~~ 415 (434)
T 4ea3_A 342 VVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRKFCCASALGR 415 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC
Confidence 9999999999999998876554322 22234455677789999999999999999999999999998766554
No 19
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=98.64 E-value=2.5e-09 Score=67.12 Aligned_cols=37 Identities=32% Similarity=0.674 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHHHh
Q psy461 464 LINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLNK 500 (507)
Q Consensus 464 ~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~~~ 500 (507)
++.++.+++++|+++||+||++++++||+++++++++
T Consensus 2 ~~~~~~~l~~~ns~lNPiIY~~~~~~fr~~~~~~~~~ 38 (40)
T 2koe_A 2 VFAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFPS 38 (40)
T ss_dssp HHHHHHHHHHHHHHSSTTTTBTTBHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhhh
Confidence 3567888999999999999999999999999998755
No 20
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Probab=98.48 E-value=5e-08 Score=57.64 Aligned_cols=31 Identities=55% Similarity=1.051 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccccch
Q psy461 132 ASILNLCAIALDRYWAITDPLVYAQQRTIKR 162 (507)
Q Consensus 132 ~S~~~l~~IaidRy~aI~~P~~y~~~~t~~~ 162 (507)
+|++++++||+|||++|++|++|...+++++
T Consensus 2 ~Si~~L~~is~dRy~aI~~Pl~~~~~~t~~~ 32 (32)
T 1hll_A 2 SSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32 (32)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHGGGSSCCCCC
T ss_pred cHHHHHHHHHHHHHHHhhhhhhcccccCCCC
Confidence 6889999999999999999999988777653
No 21
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=97.95 E-value=1.1e-06 Score=51.94 Aligned_cols=30 Identities=30% Similarity=0.768 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHhhccc
Q psy461 425 RRAARTLGIIMGVFVFCWLPFFLMYVSLPF 454 (507)
Q Consensus 425 ~r~~k~l~~i~~~f~i~w~P~~i~~~~~~~ 454 (507)
+|++|+++++++.|++||+|+.+..++..+
T Consensus 2 ~k~~k~l~~vv~~F~icW~P~~i~~~~~~~ 31 (33)
T 2ki9_A 2 VRLAKTLGLVLAVLLICWFPVLALMAHSLA 31 (33)
T ss_dssp CSSSSHHHHHHHHHTTTSSHHHHHHTTTTC
T ss_pred chhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 578899999999999999999998877543
No 22
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A
Probab=95.90 E-value=0.00064 Score=46.15 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy461 48 ITMICLSTLIIGTIIGNIMVVISVFTYKPL 77 (507)
Q Consensus 48 ~~~~~~~ii~~~gi~gN~lvi~~i~~~~~l 77 (507)
+..++|++++++|++||+++++++.++|.-
T Consensus 30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~~ 59 (64)
T 2lot_A 30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKGH 59 (64)
T ss_dssp SSHHHHHHTTTTTTTSSSSHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHhhhhhheeeeeEeccc
Confidence 567889999999999999999999887653
No 23
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=91.00 E-value=10 Score=36.84 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=15.0
Q ss_pred HhhhcchhhHHHHhhcHHHHHHHHHHHHh
Q psy461 472 GYINSGINPIIYTIFNLDFRKSFKRLLNK 500 (507)
Q Consensus 472 ~~~ns~~NPiIY~~~n~~fR~~~~~l~~~ 500 (507)
..+|.++--+.---+.+.+|+.++.+++|
T Consensus 308 s~~NPiIY~~~~~~fR~~~~~~~~~~~~~ 336 (448)
T 2z73_A 308 AIHNPMIYSVSHPKFREAISQTFPWVLTC 336 (448)
T ss_dssp GGSHHHHHHHHCHHHHHHHHHHCGGGGST
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHHHHh
Confidence 44455554444445555666655554443
No 24
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=84.04 E-value=6.5 Score=38.33 Aligned_cols=84 Identities=35% Similarity=0.660 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHhhccccCCccCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHHHhh
Q psy461 422 SKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLNKV 501 (507)
Q Consensus 422 ~~~~r~~k~l~~i~~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~~~~ 501 (507)
++|+|++||+++++++|++||+|+.++.++..+.+. .....+..++.+|+++|+++||+||+++|++||++++++|+|.
T Consensus 381 ~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~-~~~~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c~ 459 (467)
T 3uon_A 381 SREKKVTRTILAILLAFIITWAPYNVMVLINTFCAP-CIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLMCH 459 (467)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCST-TSCHHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHHHHHHCC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHHHHHHHhhh
Confidence 578999999999999999999999999988877653 3457788899999999999999999999999999999999777
Q ss_pred hhccc
Q psy461 502 SLSRE 506 (507)
Q Consensus 502 ~~~~~ 506 (507)
+++++
T Consensus 460 ~~~~~ 464 (467)
T 3uon_A 460 YKNIG 464 (467)
T ss_dssp -----
T ss_pred ccCCC
Confidence 66553
No 25
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=81.37 E-value=39 Score=32.36 Aligned_cols=82 Identities=11% Similarity=0.118 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHhhccccCCccCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHHHhhhhc
Q psy461 425 RRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLNKVSLS 504 (507)
Q Consensus 425 ~r~~k~l~~i~~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~~~~~~~ 504 (507)
++-.|..-.++++.++..+-+.=..++...................+..+-..+|+.+-.+.--=+-+.+++-+++..++
T Consensus 347 ~~~~r~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~ 426 (447)
T 4eiy_A 347 QKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRS 426 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhheeccHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHhccchhhhHhccHHHHHHHHHHHHH
Confidence 44445555555555554333333333332211121112222333444555556777777777778889999999887665
Q ss_pred cc
Q psy461 505 RE 506 (507)
Q Consensus 505 ~~ 506 (507)
+.
T Consensus 427 ~~ 428 (447)
T 4eiy_A 427 HV 428 (447)
T ss_dssp TC
T ss_pred HH
Confidence 43
No 26
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=73.92 E-value=2.6 Score=21.46 Aligned_cols=15 Identities=53% Similarity=0.877 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhh
Q psy461 488 LDFRKSFKRLLNKVS 502 (507)
Q Consensus 488 ~~fR~~~~~l~~~~~ 502 (507)
++||+.++++|++..
T Consensus 4 krfrkkfkklfkkls 18 (27)
T 2ket_A 4 KRFRKKFKKLFKKLS 18 (27)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcC
Confidence 689999999998763
No 27
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=55.01 E-value=1.6e+02 Score=28.77 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=14.7
Q ss_pred cchhhHHHHhhcHHHHHHHHHHHHhhhhcc
Q psy461 476 SGINPIIYTIFNLDFRKSFKRLLNKVSLSR 505 (507)
Q Consensus 476 s~~NPiIY~~~n~~fR~~~~~l~~~~~~~~ 505 (507)
..+|+.+-.+.-- +.+.+++-+++..+++
T Consensus 464 ~~~ns~~NPiIY~-~~~~fR~~~~~~l~~~ 492 (514)
T 3sn6_R 464 GYVNSGFNPLIYC-RSPDFRIAFQELLCLR 492 (514)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHTTCC--
T ss_pred HHHHHhhhHHhhc-CCHHHHHHHHHHhCcC
Confidence 3445555555555 5566666665554443
No 28
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=50.17 E-value=28 Score=33.49 Aligned_cols=85 Identities=44% Similarity=1.040 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhchhHHHHHhhccccCCccCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHHHH
Q psy461 420 SLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLN 499 (507)
Q Consensus 420 ~~~~~~r~~k~l~~i~~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l~~ 499 (507)
..++++|++||+++++++|++||+|+.++.++..+.+. .....+..++.+|.++|+++||+||+++|++||++++++++
T Consensus 364 ~~~~~~k~~k~l~~vv~~f~icwlP~~i~~l~~~~~~~-~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~ 442 (452)
T 3rze_A 364 HMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKN-CCNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILH 442 (452)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-CSCTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHhcccchhhhhccHHHHHHHHHHHH
Confidence 45688999999999999999999999999888776554 33456677889999999999999999999999999999998
Q ss_pred hhhhcc
Q psy461 500 KVSLSR 505 (507)
Q Consensus 500 ~~~~~~ 505 (507)
|+++++
T Consensus 443 ~~~~~~ 448 (452)
T 3rze_A 443 IRSGEN 448 (452)
T ss_dssp C-----
T ss_pred hccccc
Confidence 877665
No 29
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=33.41 E-value=3.2e+02 Score=25.97 Aligned_cols=88 Identities=32% Similarity=0.614 Sum_probs=76.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhchhHHHHHhhccccCC-ccCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHH
Q psy461 419 ISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDT-CCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRL 497 (507)
Q Consensus 419 ~~~~~~~r~~k~l~~i~~~f~i~w~P~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l 497 (507)
...++++|++||+++++++|++||+|+.++.++..+..+ ......+..++.+|+++|+++||+||+++|++||++++++
T Consensus 385 ~~~~~~~r~~~~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~l 464 (488)
T 3eml_A 385 STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKI 464 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCccccccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHHHHHH
Confidence 345788999999999999999999999999888877654 3456667778899999999999999999999999999999
Q ss_pred HHhhhhccc
Q psy461 498 LNKVSLSRE 506 (507)
Q Consensus 498 ~~~~~~~~~ 506 (507)
|+|.+++++
T Consensus 465 ~~~~~~~~~ 473 (488)
T 3eml_A 465 IRSHVLRQQ 473 (488)
T ss_dssp HHHTTSCC-
T ss_pred HhhcccccC
Confidence 998877654
No 30
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=32.35 E-value=3.3e+02 Score=25.84 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy461 216 FIPLAIMTLVYVEIFLATKKRLRDR 240 (507)
Q Consensus 216 ~ip~~vi~~~y~~I~~~l~~~~~~~ 240 (507)
.+-.++-.+.|+..-...|+..++.
T Consensus 445 ~~ns~~NPiIY~~~~~~fR~~~~~l 469 (481)
T 3pbl_A 445 YVNSALNPVIYTTFNIEFRKAFLKI 469 (481)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHhhccchHHHHHcCHHHHHHHHHH
Confidence 4445555666766666666655543
No 31
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=28.28 E-value=3.8e+02 Score=25.20 Aligned_cols=84 Identities=24% Similarity=0.531 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhchhHHHHHhhccccC--CccCchhHHHHHHHHHhhhcchhhHHHHhhcHHHHHHHHHH
Q psy461 420 SLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCD--TCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRL 497 (507)
Q Consensus 420 ~~~~~~r~~k~l~~i~~~f~i~w~P~~i~~~~~~~~~--~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~n~~fR~~~~~l 497 (507)
+.++|+|++||+++++++|++||+|++++.++..+.. .......++.++.+|+++|+++||+||+++|++||++++++
T Consensus 374 ~~~~~~r~~k~l~~v~~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~l 453 (464)
T 4dkl_A 374 KDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREF 453 (464)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccchhHHHHHHHHHHhhhchhHHHHHHhhHHHHHHHHHH
Confidence 3467899999999999999999999999988876543 23334555667888999999999999999999999999998
Q ss_pred HHhhhh
Q psy461 498 LNKVSL 503 (507)
Q Consensus 498 ~~~~~~ 503 (507)
+++...
T Consensus 454 c~~~~~ 459 (464)
T 4dkl_A 454 CIPTSS 459 (464)
T ss_dssp HC----
T ss_pred hccccc
Confidence 655433
No 32
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=26.80 E-value=98 Score=17.92 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=11.7
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHH
Q psy461 216 FIPLAIM-TLVYVEIFLATKKRLRD 239 (507)
Q Consensus 216 ~ip~~vi-~~~y~~I~~~l~~~~~~ 239 (507)
++|++++ .+.|..+++--+|+.+.
T Consensus 6 ~l~~v~~~~ifYFl~iRPQ~Kr~K~ 30 (37)
T 2rdd_B 6 ILMLVVFGLIFYFMILRPQQKRTKE 30 (37)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444443 45566665544444443
No 33
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=25.80 E-value=46 Score=19.29 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy461 48 ITMICLSTLIIGTIIGN 64 (507)
Q Consensus 48 ~~~~~~~ii~~~gi~gN 64 (507)
...++++.++++|++.|
T Consensus 10 ~vV~ffvsLFiFGfLsn 26 (38)
T 3arc_I 10 IVVTFFVLLFVFGFLSG 26 (38)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHccccCC
Confidence 34455666666777665
Done!