RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy461
(507 letters)
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 399 bits (1027), Expect = e-135
Identities = 109/465 (23%), Positives = 190/465 (40%), Gaps = 35/465 (7%)
Query: 42 PEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLP 101
+E + ++ +L + TIIGNI+V++S+ + L+ V N+F+ SLA ADL + +F +
Sbjct: 19 KTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMN 78
Query: 102 LSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIK 161
L +Y + G W G ++C +WL D + AS++NL I+ DRY+ +T PL Y +RT K
Sbjct: 79 LYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTK 138
Query: 162 RVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTP---CQLTQQRGYVVYSSLGSFFIP 218
MMI W+LS ++ +P ++ W V + Q +++ +F++P
Sbjct: 139 MAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIAAFYLP 198
Query: 219 LAIMTLVYVEIFLATKKRLRDRA-----KASKLNIVKQTTLHNVQKEVQSPLEPESISSE 273
+ IMT++Y I A+K R+ + +L I K T + + S+++
Sbjct: 199 VIIMTVLYWHISRASKSRINIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAA 258
Query: 274 NDTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARN 333
K +K N + ++ +R +L N L +
Sbjct: 259 KSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINM 318
Query: 334 DNMGEFVHINNNETTFTNKTISDDISLASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVK 393
+ + A + + N K +
Sbjct: 319 VFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTW---- 374
Query: 394 SEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLP 453
S+E++ RT+ I+ F+ W P+ +M +
Sbjct: 375 ----------------------DAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINT 412
Query: 454 FCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLL 498
FC C+ + + WL YINS INP Y + N F+K+FK LL
Sbjct: 413 FCA-PCIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLL 456
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 391 bits (1005), Expect = e-132
Identities = 124/472 (26%), Positives = 211/472 (44%), Gaps = 28/472 (5%)
Query: 31 SAFFNNIEYSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAV 90
+ N + + LI+ + GN +V ++V + L+ N+ +VSLAV
Sbjct: 23 TCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAV 82
Query: 91 ADLTVAIFVLPLSLIYYLSG-RWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAIT 149
ADL VA V+P + ++G W F I C +++T DV+ CTASI NLCAI++DRY A+
Sbjct: 83 ADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVV 142
Query: 150 DPLVYAQ---QRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQLTQQRGY 206
P+ Y Q + +RV +MI VW+L+ +S P L G+N + T C ++ +
Sbjct: 143 MPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTGD----PTVCSISN-PDF 197
Query: 207 VVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLE 266
V+YSS+ SF++P + LVY I++ K+R R K ++ ++ E
Sbjct: 198 VIYSSVVSFYLPFGVTVLVYARIYVVLKQRRR------KNIFEMLRIDEGLRLKIYKDTE 251
Query: 267 PESISSENDTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSS 326
+ K K + +N N L N+D ++ + ++
Sbjct: 252 GYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNA 311
Query: 327 NKIAARNDNMGEFVHINNNETTFTNKTISDDISLASIKSDKKPNNGNGCHVKTPVPHELN 386
+ N +T + + +K + ++ +
Sbjct: 312 KLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWY--- 368
Query: 387 LKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAARTLGIIMGVFVFCWLPFF 446
+ +A + +E++A + + I++G F+ CWLPFF
Sbjct: 369 ----------NQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFF 418
Query: 447 LMYVSLPFCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLL 498
L +V C TC +S L + TWLGY+NS +NP+IYT FN++FRK+F ++L
Sbjct: 419 LTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKIL 470
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 391 bits (1006), Expect = e-132
Identities = 113/470 (24%), Positives = 186/470 (39%), Gaps = 29/470 (6%)
Query: 35 NNIEYSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLT 94
+++ E + I +S +++ + GN++V+ ++ ++ L+ V N+FI SLA ADL
Sbjct: 29 HDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLV 88
Query: 95 VAIFVLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVY 154
+ + V+P + L W FG C+ W + DVLC TASI LC IA+DRY+AIT P Y
Sbjct: 89 MGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY 148
Query: 155 AQQRTIKRVMMMIMYVWLLSALISSPPLI-GWNDWP-----EVFEADTPCQLTQQRGYVV 208
T + ++I+ VW++S L S P+ W + +T C + Y +
Sbjct: 149 QSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAI 208
Query: 209 YSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPE 268
SS+ SF++PL IM VY +F K++L + ++ + E
Sbjct: 209 ASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRI----------DEGLRLKIYKDTE 258
Query: 269 SISSENDTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNK 328
+ + + N N + D N
Sbjct: 259 GYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNA 318
Query: 329 IAARNDNMGEFVHINNNETTFTNKTISDDISLASIKSDKKPNNGNGCHVKTPVPHELNLK 388
+ + V + + + + V N
Sbjct: 319 KLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQT 378
Query: 389 STSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAARTLGIIMGVFVFCWLPFFLM 448
+A + KE +A +TLGIIMG F CWLPFF++
Sbjct: 379 PN-----------RAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIV 427
Query: 449 YVSLPFCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLL 498
+ D + + + W+GY+NSG NP+IY + DFR +F+ LL
Sbjct: 428 NIVHVIQD-NLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELL 475
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 389 bits (1000), Expect = e-132
Identities = 107/463 (23%), Positives = 199/463 (42%), Gaps = 27/463 (5%)
Query: 40 SVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFV 99
++ + + ++ LST+ + T+ N++V+ +V + + L V N +IVSL+VADL V V
Sbjct: 2 TMASPQLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVV 61
Query: 100 LPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRT 159
+P++++Y L +W G +C WL+ D + TASI ++ + +DRY ++ PL Y + RT
Sbjct: 62 MPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRT 121
Query: 160 IKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTP----CQLTQQRGYVVYSSLGSF 215
R I+ W LS L P++GWN + + + V +++ +F
Sbjct: 122 KTRASATILGAWFLSFLW-VIPILGWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINF 180
Query: 216 FIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPESISSEND 275
++P +M Y +I+ A ++ ++ E + + +++
Sbjct: 181 YLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLK--IYKDTEGYYTIGIGHLLTKSP 238
Query: 276 TKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARNDN 335
+ + + + N + F + V + L + + A
Sbjct: 239 SLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRA 298
Query: 336 MGEFVHINNNETTFTNKTISDDISLASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVKSE 395
+ ET T S + + N
Sbjct: 299 ALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNR------------ 346
Query: 396 VSIVVIQAPSTQVVKQFIEEKQKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFC 455
A + + +++ER+AA+ LG IM F+ CW+P+F+ ++ + FC
Sbjct: 347 -------AKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFC 399
Query: 456 DTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLL 498
CC ++ L F WLGYINS +NP+IY + N +F+K+FKR+L
Sbjct: 400 KNCC-NEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRIL 441
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 380 bits (977), Expect = e-128
Identities = 96/482 (19%), Positives = 183/482 (37%), Gaps = 36/482 (7%)
Query: 40 SVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFV 99
+ P + + + + + I+GN++V +V+ L+ V N+F+VSLA AD+ V +
Sbjct: 15 APPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLA 74
Query: 100 LPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRT 159
+P ++ +S + C ++ +SI +L AIA+DRY AI PL Y T
Sbjct: 75 IPFAI--TISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVT 132
Query: 160 IKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQ-------------LTQQRGY 206
R +I W+LS I P++GWN+ + E Q +
Sbjct: 133 GTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYM 192
Query: 207 VVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLE 266
V ++ +PL +M VY+ IFLA +++L + + L+
Sbjct: 193 VYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEML--------------RIDEGLRLK 238
Query: 267 PESISSENDTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSS 326
+ T H K + + N+ + + + L +
Sbjct: 239 IYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVI------TKDEAEKLFNQD 292
Query: 327 NKIAARNDNMGEFVHINNNETTFTNKTISDDISLASIKSDKKPNNGNGCHVKTPVPHELN 386
A R + + + ++ ++ + ++ E
Sbjct: 293 VDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 352
Query: 387 LKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAARTLGIIMGVFVFCWLPFF 446
+ + + + + +L KE AA++L II+G+F CWLP
Sbjct: 353 VNLAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLH 412
Query: 447 LMYVSLPFCDTCCMSDR-LINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLNKVSLSR 505
++ FC C + L+ L + NS +NP IY +FR++F++++ L +
Sbjct: 413 IINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ 472
Query: 506 ER 507
+
Sbjct: 473 QE 474
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 307 bits (786), Expect = 6e-99
Identities = 78/462 (16%), Positives = 163/462 (35%), Gaps = 34/462 (7%)
Query: 42 PEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFVLP 101
E +T + + I+ NI V+++++ K +FI +LA++DL +
Sbjct: 59 KENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTA 118
Query: 102 LSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRTIK 161
L + + + S + +AS+ +L AIA++RY +
Sbjct: 119 NLL-LSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMK-LHNGSNNF 176
Query: 162 RVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQLTQQRGYVVYSSLGSFFIPLAI 221
R+ ++I W++S ++ P++GWN + T + Y+++ + F + L
Sbjct: 177 RLFLLISACWVISLILGGLPIMGWNCISALSSCST-VLPLYHKHYILFCTT-VFTLLLLS 234
Query: 222 MTLVYVEIFLATKK----RLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPESISSENDTK 277
+ ++Y I+ + + + +L I K T + + S+++
Sbjct: 235 IVILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSEL 294
Query: 278 SGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAARNDNMG 337
K +K N + ++ +R +L N L + NM
Sbjct: 295 DKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALI---NMV 351
Query: 338 EFVHINNNETTFTNKTISDDISLASIKSDKKPNNGNGCHVKTPVPHELNLKSTSVKSEVS 397
+ S + + T +++
Sbjct: 352 FQMGETGVA--------------GFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAK-- 395
Query: 398 IVVIQAPSTQVVKQFIEEKQKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDT 457
+ + S+ +T+ I++ VF+ CW P F++ + C
Sbjct: 396 ------RVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKV 449
Query: 458 C-CMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLL 498
C + L +NSG NPIIYT+ N + R++F R++
Sbjct: 450 KTCDILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIM 491
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 276 bits (706), Expect = 7e-88
Identities = 63/296 (21%), Positives = 119/296 (40%), Gaps = 15/296 (5%)
Query: 27 QYYPSAFFNNIEYSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIV 86
+ + ++ + + P + + + + + I+GN++V +V+ L+ V N+F+V
Sbjct: 12 CLVFADYKDDDDGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVV 71
Query: 87 SLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYW 146
SLA AD+ V + +P ++ +S + C ++ +SI +L AIA+DRY
Sbjct: 72 SLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYI 129
Query: 147 AITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQ------- 199
AI PL Y T R +I W+LS I P++GWN+ + E Q
Sbjct: 130 AIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQV 189
Query: 200 ------LTQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTT 253
+ V ++ +PL +M VY+ IFLA +++L D +
Sbjct: 190 ACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKV 249
Query: 254 LHNVQKEVQSPLEPESISSENDTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPV 309
+ Q + + K K+ K+ + + + +
Sbjct: 250 IEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQI 305
Score = 118 bits (296), Expect = 5e-29
Identities = 42/197 (21%), Positives = 73/197 (37%), Gaps = 2/197 (1%)
Query: 313 EDSMTDIQDLSSSSNKIAARNDNMGEFVHINNNETTFTNKTISDDISLASIKSDKKPNNG 372
ED+ + D K + T + + K
Sbjct: 237 EDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRH 296
Query: 373 NGCHVKTPVPHELNLKSTSVKSEVSIVVIQAPSTQV-VKQFIEEKQKISLSKERRAARTL 431
+ + L L + E Q +T+ Q E+ + +L KE AA++L
Sbjct: 297 GFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVHAAKSL 356
Query: 432 GIIMGVFVFCWLPFFLMYVSLPFCDTCC-MSDRLINFITWLGYINSGINPIIYTIFNLDF 490
II+G+F CWLP ++ FC C L+ L + NS +NP IY +F
Sbjct: 357 AIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREF 416
Query: 491 RKSFKRLLNKVSLSRER 507
R++F++++ L ++
Sbjct: 417 RQTFRKIIRSHVLRQQE 433
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 271 bits (694), Expect = 3e-85
Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 6/249 (2%)
Query: 38 EYSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAI 97
Y+ E + I +S +++ + GN++V+ ++ ++ L+ V N+FI SLA ADL + +
Sbjct: 174 AYAADEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGL 233
Query: 98 FVLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQ 157
V+P + L+ W FG C+ W + DVLC TASI LC IA+DRY+AIT P Y
Sbjct: 234 AVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSL 293
Query: 158 RTIKRVMMMIMYVWLLSALISSPPLI-GWN-----DWPEVFEADTPCQLTQQRGYVVYSS 211
T + ++I+ VW++S L S P+ W + + +T C + Y + SS
Sbjct: 294 LTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASS 353
Query: 212 LGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPESIS 271
+ SF++PL IM VY +F K++L+ K+ V+ + L S
Sbjct: 354 IVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKF 413
Query: 272 SENDTKSGK 280
+ K+ K
Sbjct: 414 CLKEHKALK 422
Score = 114 bits (287), Expect = 1e-27
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 407 QVVKQFIEEKQKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLIN 466
+ KE +A +TLGIIMG F CWLPFF++ + D + +
Sbjct: 400 DGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQD-NLIRKEVYI 458
Query: 467 FITWLGYINSGINPIIYTIFNLDFRKSFKRLL 498
+ W+GY+NSG NP+IY + DFR +F+ LL
Sbjct: 459 LLNWIGYVNSGFNPLIYC-RSPDFRIAFQELL 489
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 255 bits (654), Expect = 1e-81
Identities = 74/221 (33%), Positives = 124/221 (56%), Gaps = 7/221 (3%)
Query: 36 NIEYSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTV 95
E +WEA ++++ ++ +++ + GN++V+ ++ + + L+ + N FI SLA ADL V
Sbjct: 2 GAELLSQQWEAGMSLL-MALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVV 60
Query: 96 AIFVLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYA 155
+ V+P + G W++G +C++W + DVLC TASI LC IA+DRY AIT P Y
Sbjct: 61 GLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQ 120
Query: 156 QQRTIKRVMMMIMYVWLLSALISSPPLI-GWN-----DWPEVFEADTPCQLTQQRGYVVY 209
T R ++I VW +SAL+S P++ W + ++ C R Y +
Sbjct: 121 SLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIA 180
Query: 210 SSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVK 250
SS+ SF+IPL IM V + ++ K+++R +ASK +
Sbjct: 181 SSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSR 221
Score = 110 bits (277), Expect = 3e-27
Identities = 42/82 (51%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 417 QKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINS 476
++ L +E +A +TLGIIMGVF CWLPFFL+ + F + D L WLGY NS
Sbjct: 220 SRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNR-DLVPDWLFVAFNWLGYANS 278
Query: 477 GINPIIYTIFNLDFRKSFKRLL 498
+NPIIY + DFRK+FKRLL
Sbjct: 279 AMNPIIYC-RSPDFRKAFKRLL 299
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 201 bits (513), Expect = 3e-59
Identities = 95/481 (19%), Positives = 177/481 (36%), Gaps = 41/481 (8%)
Query: 40 SVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIFV 99
S AI M S + + + GN +V+ + Y ++ N +I +LA+AD +A
Sbjct: 11 SPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADA-LATST 69
Query: 100 LPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQRT 159
LP + YL G W FG I+CKI ++ D SI LC +++DRY A+ P+ RT
Sbjct: 70 LPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRT 129
Query: 160 IKRVMMMIMYVWLLSALISSPPLIGW-----NDWPEVFEADTPCQLTQQRGYVVYSSLGS 214
+ ++ + W+LS+ I P + + + + + + +
Sbjct: 130 PRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFA 189
Query: 215 FFIPLAIMTLVYVEIFLATKK-----RLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPES 269
F +P+ I+T+ Y + L K + + +L I K T + + S
Sbjct: 190 FIMPVLIITVCYGLMILRLKSVRNIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLTKSPS 249
Query: 270 ISSENDTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDL-SSSSNK 328
+++ K +K N + ++ +R +L N L +
Sbjct: 250 LNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAA 309
Query: 329 IAARNDNMGEFVHINNNETTFTNKTISDDISLASIKSDKKPNNGNGCHVKTPVPHELNLK 388
+ MGE FTN + +
Sbjct: 310 LINMVFQMGE-----TGVAGFTN----------------SLRMLQQKRWDEAAVNLAKSR 348
Query: 389 STSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAARTLGIIMGVFVFCWLPFFLM 448
+ + VI T + +++ RR R + +++ VF+ CW P +
Sbjct: 349 WYNQTPNRAKRVITTFRTGTWDAYEKDRNL------RRITRMVLVVVAVFIVCWTPIHIY 402
Query: 449 YV--SLPFCDTCCMSDRLINFITWLGYINSGINPIIYTIFNLDFRKSFKRLLNKVSLSRE 506
+ +L +F LGY NS +NP++Y + +F++ F+ S + E
Sbjct: 403 VIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFCIPTSSTIE 462
Query: 507 R 507
+
Sbjct: 463 Q 463
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 167 bits (424), Expect = 1e-46
Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 7/228 (3%)
Query: 39 YSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIF 98
VP+ I + I GN +V+ K L+ N FI++LA +D T ++
Sbjct: 27 DQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLV 86
Query: 99 -VLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQ 157
PL I +WIFG CK++ + SI+ + I++DRY I P+ +++
Sbjct: 87 NGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKK 146
Query: 158 RTIKRVMMMIMYVWLLSALISSPPLIGWND-WPEVFEA----DTPCQLTQQRGYVVYSSL 212
+ +R +MI++VWL S L + P+ GW E D + + R ++ +
Sbjct: 147 MSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFI 206
Query: 213 GSFFIPLAIMTLVYVEIFLATKKRLRD-RAKASKLNIVKQTTLHNVQK 259
FF P+ I+ Y I ++ ++ A A +LN +
Sbjct: 207 LGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGAN 254
Score = 64.6 bits (157), Expect = 3e-11
Identities = 15/83 (18%), Positives = 36/83 (43%)
Query: 416 KQKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYIN 475
K + + E R A+ +I+ F+ W P+ ++ + F ++ +
Sbjct: 248 KAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKAS 307
Query: 476 SGINPIIYTIFNLDFRKSFKRLL 498
+ NP+IY++ + FR++ +
Sbjct: 308 AIHNPMIYSVSHPKFREAISQTF 330
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 164 bits (416), Expect = 2e-46
Identities = 46/211 (21%), Positives = 91/211 (43%), Gaps = 20/211 (9%)
Query: 39 YSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAIF 98
Y W+ + + LI+ N + + +K LR N+ +++LAVADL +
Sbjct: 31 YLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG 90
Query: 99 VLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQR 158
+L L G ++FG C + L ++ +L +A++RY + P+ +
Sbjct: 91 GFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPM-SNFRF 149
Query: 159 TIKRVMMMIMYVWLLSALISSPPLIGWN-------------DWPEVFEADTPCQLTQQRG 205
+M + + W+++ ++PPL+GW+ D+ TP + T
Sbjct: 150 GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYY------TPHEETNNES 203
Query: 206 YVVYSSLGSFFIPLAIMTLVYVEIFLATKKR 236
+V+Y + F IPL ++ Y ++ K+
Sbjct: 204 FVIYMFVVHFIIPLIVIFFCYGQLVFTVKEA 234
Score = 56.2 bits (136), Expect = 8e-09
Identities = 16/82 (19%), Positives = 31/82 (37%)
Query: 417 QKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINS 476
+ E+ R + I++ F+ CWLP+ + + + + ++
Sbjct: 241 SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSA 300
Query: 477 GINPIIYTIFNLDFRKSFKRLL 498
NP+IY + N FR L
Sbjct: 301 VYNPVIYIMMNKQFRNCMVTTL 322
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 155 bits (395), Expect = 4e-43
Identities = 47/216 (21%), Positives = 100/216 (46%), Gaps = 24/216 (11%)
Query: 38 EYSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAVADLTVAI 97
++ P W+ ++ + +++ +++GN++V+ + +K +R V N+F+V+LA A+ ++A
Sbjct: 24 QFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAA 83
Query: 98 FVLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAITDPLVYAQQ 157
F ++ Y + W +G+ CK + ASI ++ A+A DRY AI PL +
Sbjct: 84 FNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPL--QPR 141
Query: 158 RTIKRVMMMIMYVWLLSALISSPPLIGWN------------DWPEVFEADTPCQLTQQRG 205
+ ++I +W+L+ L++ P +WPE ++
Sbjct: 142 LSATATKVVICVIWVLALLLAFPQGYYSTTETMPSRVVCMIEWPEHPNK------IYEKV 195
Query: 206 YVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRA 241
Y + ++ +F+PL ++ Y + L
Sbjct: 196 YHICVTVLIYFLPLLVIGYAYTVVG----ITLWASE 227
Score = 69.7 bits (171), Expect = 4e-13
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 415 EKQKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLIN---FITWL 471
++ +S +R+ + + +++ F CWLPF + ++ + + I WL
Sbjct: 234 DRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWL 293
Query: 472 GYINSGINPIIYTIFNLDFRKSFKRLL 498
++ NPIIY N FR FK
Sbjct: 294 AMSSTMYNPIIYCCLNDRFRLGFKHAF 320
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 139 bits (352), Expect = 1e-36
Identities = 48/235 (20%), Positives = 100/235 (42%), Gaps = 15/235 (6%)
Query: 29 YPSAFFNNIEYSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSL 88
+ + +P + + + +G ++GN +V+ + + ++ N +I +L
Sbjct: 108 RNAYIQKYLGAFLPLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNL 167
Query: 89 AVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAI 148
A+AD V + LP L G W FG +CK + D S L A+++DRY AI
Sbjct: 168 ALADTLV-LLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAI 226
Query: 149 TDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLI----GWNDWPEVFEADTP-CQLTQQ 203
P+ RT + + + +W L++++ P I D + P Q
Sbjct: 227 CHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEIECLVEIPTPQDYWG 286
Query: 204 RGYVVYSSLGSFFIPLAIMTLVYVEI---------FLATKKRLRDRAKASKLNIV 249
+ + L SF +P+ ++++ Y + ++++ R+ + ++L +V
Sbjct: 287 PVFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRLLSGSREKDRNLRRITRLVLV 341
Score = 86.0 bits (213), Expect = 3e-18
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 416 KQKISLSKERRAARTLGIIMGVFVFCWLPF--FLMYVSLPFCDTCCMSDRLINFITWLGY 473
+ RR R + +++ VFV CW P F++ L + + ++ F T LGY
Sbjct: 324 GSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGY 383
Query: 474 INSGINPIIYTIFNLDFRKSFKRLLNKVSLSRE 506
+NS +NPI+Y + +F+ F++ +L R
Sbjct: 384 VNSCLNPILYAFLDENFKACFRKFCCASALGRP 416
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 126 bits (317), Expect = 2e-31
Identities = 43/233 (18%), Positives = 87/233 (37%), Gaps = 9/233 (3%)
Query: 28 YYPSAFFNNIEYSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVS 87
Y S + I S + + I+GN +V++ + K LR + + + +
Sbjct: 30 DYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLH 89
Query: 88 LAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWA 147
L+VADL + LP W FG +CK + +S+ L I+LDRY A
Sbjct: 90 LSVADLLF-VITLPF-WAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLA 147
Query: 148 ITDPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGWNDWPEVFEADTPCQL-----TQ 202
I + R + ++ + VW+ + L++ P I + + E + C
Sbjct: 148 IVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFI-FANVSEA-DDRYICDRFYPNDLW 205
Query: 203 QRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLH 255
+ + +P ++ Y I + + +++ + ++
Sbjct: 206 VVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIY 258
Score = 58.8 bits (142), Expect = 2e-09
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 422 SKERRAARTLGIIMGVFVFCWLPFFLM---------YVSLPFCDTCCMSDRLINFITWLG 472
++R+A +T I++ F CWLP+++ + C+ + I+ L
Sbjct: 406 HQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALA 465
Query: 473 YINSGINPIIYTIFNLDFRKSFKRLLNK 500
+ + +NPI+Y F+ S + L
Sbjct: 466 FFHCCLNPILYAFLGAKFKTSAQHALTS 493
Score = 31.4 bits (71), Expect = 0.84
Identities = 12/95 (12%), Positives = 27/95 (28%), Gaps = 2/95 (2%)
Query: 412 FIEEKQKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWL 471
I K S S R + ++ + + + ++ +
Sbjct: 231 IIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAI 290
Query: 472 GYINSGINPI--IYTIFNLDFRKSFKRLLNKVSLS 504
G +G+ +FN D + + +L L
Sbjct: 291 GRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLK 325
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 64.0 bits (156), Expect = 1e-13
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 131 TASILNLCAIALDRYWAITDPLVYAQQRTIKR 162
T+SI++LCAI+LDRYW+IT + Y +RT +R
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 6e-04
Identities = 75/491 (15%), Positives = 140/491 (28%), Gaps = 166/491 (33%)
Query: 70 SVFTYKPLRIVQNFFIVSLAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWLTSDVL- 128
VF + +Q + + A+ +L A VL I + G G K W+ DV
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVL----IDGVLG---SG----KTWVALDVCL 172
Query: 129 -------------------CCTA-SIL----NLCAIA-------LDRYWAITDPLVYAQQ 157
C + ++L L D I + Q
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 158 RTIKRVMMMIMYVWLLSALISSPPLI---GWNDWPEVFEA-DTPCQLTQQRGYVVYSSLG 213
++R++ Y + L L+ N + + A + C+
Sbjct: 233 E-LRRLLKSKPYE---NCL-----LVLLNVQN--AKAWNAFNLSCK-------------- 267
Query: 214 SFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIVKQTTLHNVQKEVQSPLEPESISSE 273
L+ T R + L+ T H L P+ E
Sbjct: 268 ---------ILL------TT----RFKQVTDFLSAATTT--HISLDHHSMTLTPD----E 302
Query: 274 NDTKSGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSSNKIAA-- 331
+ K+ + + + ++ + N P + S+ IA
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTN----------PRRL---SI------------IAESI 337
Query: 332 -----RNDNMGEFVHINNNETTFTNKTISDDISLASIKSDKKPNNGNGCHVKTPV-PHEL 385
DN + H+N ++ T I + SL + +P + V P
Sbjct: 338 RDGLATWDN---WKHVNCDKLT---TII--ESSLNVL----EPAEYRKMFDRLSVFP--- 382
Query: 386 NLKSTSVKSEVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAARTLGIIMGVFVFCWLP- 444
S + + + ++ V + + K SL +++ T+ I
Sbjct: 383 --PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 445 -------FFLMYVSLP--FCDTCCMSDRLINFITW-LGYINSGINPI-IYTIFN---LDF 490
+ + ++P F + L + +G+ I T+F LDF
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 491 RKSFKRLLNKV 501
R F L K+
Sbjct: 501 R--F--LEQKI 507
Score = 30.2 bits (67), Expect = 2.1
Identities = 28/194 (14%), Positives = 54/194 (27%), Gaps = 61/194 (31%)
Query: 10 GVENFTADISVCVE-----EEKQYYPS-AFFN---NIEYSVPE--W--------EAIITM 50
+ T I + E ++ + + F +I + W ++
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 51 ICLSTLII-----GTI-IGNIMVVIS-------------VFTYKPLRIVQN--------- 82
+ +L+ TI I +I + + V Y + +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 83 ----FFIVS-LAVADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNL 137
I L + + + + +L R++ KI S + SILN
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRM---VFLDFRFLEQ----KIRHDSTAWNASGSILNT 523
Query: 138 CAIALDRYWA-ITD 150
L Y I D
Sbjct: 524 L-QQLKFYKPYICD 536
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.015
Identities = 45/286 (15%), Positives = 84/286 (29%), Gaps = 84/286 (29%)
Query: 30 PSAFFNNIEYSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLA 89
+ +I S P +I + L + +V + + P + +
Sbjct: 227 DKDYLLSIPISCP-------LIGVIQL------AHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 90 VADLTVAIFVLPLSLIYYLSGRW-IFGIIICKI--WLTSDVLCC--TASILNLCAIALDR 144
L A+ + + W F + + K L + C +L L+
Sbjct: 274 SQGLVTAVAIA-------ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 145 YW-----------AITDPLVYAQ-QRTIKRVMMMI-----MYVWLL----SALISSPP-- 181
+I++ L Q Q + + + + + L+ + ++S PP
Sbjct: 327 SLENNEGVPSPMLSISN-LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 182 LIGWNDWPEVFEADTPCQLTQQRGYVVYSSLGSFFIPLAIMTLVYVEIFL---------- 231
L G N +A P L Q R IP + L + FL
Sbjct: 386 LYGLNLTLRKAKA--PSGLDQSR------------IPFSERKLKFSNRFLPVASPFHSHL 431
Query: 232 ---ATKKRLRDRA------KASKLNI-VKQT-TLHNVQKEVQSPLE 266
A+ +D A + I V T +++ S E
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Score = 33.9 bits (77), Expect = 0.18
Identities = 50/300 (16%), Positives = 86/300 (28%), Gaps = 118/300 (39%)
Query: 171 WLLSALISSPPLIGWNDWPEVFEADTPCQLTQQRGYVVYSSL-----GSFFIPLAIMTLV 225
+LLS IS PLIG + Q YVV + L G L T
Sbjct: 230 YLLSIPISC-PLIG---------------VIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 226 YVEIFLA-------TKKRLRDRAKASKLNIVKQTTLHNVQKEV-QSPLEPESISSENDTK 277
+ A + + + + + ++ + + + L P
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKA-ITVLFFIGVR-CYEAYPNTSLPPS--------- 322
Query: 278 SGKHKNKKRKKTKKKNVQKNNNNNNNSFLRPVLINEDSMTDIQDLSSSS--NKIAARNDN 335
++ + NN P M I +L+ + + N +
Sbjct: 323 ---------------ILEDSLENNEGV---P-----SPMLSISNLTQEQVQDYVNKTNSH 359
Query: 336 MGEFVHINNNETTFTNKTISDDISLASIKSDKKPNNGNGCHVKT-PVPHELNLKSTSVKS 394
+ K + ISL NG V + P P L + +++
Sbjct: 360 LPA------------GKQVE--ISLV---------NGAKNLVVSGP-PQSLYGLNLTLRK 395
Query: 395 EVSIVVIQAPSTQVVKQFIEEKQKISLSKERRAARTLGIIMGVFVFCWLPFFLMYVSLPF 454
+APS ++ +I S+ R L F +LP V+ PF
Sbjct: 396 ------AKAPSGL-------DQSRIPFSE-----RKL-----KFSNRFLP-----VASPF 427
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.4 bits (78), Expect = 0.048
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 25/66 (37%)
Query: 266 EPESIS----------SENDTKSGKHK--------------NKKRKKTKKKNVQKNNNNN 301
EPESI E D S + N+++ + +KN + NN
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN-KINNRIA 141
Query: 302 NNSFLR 307
+ +F +
Sbjct: 142 DKAFYQ 147
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane
protein; NMR {Synthetic}
Length = 33
Score = 30.8 bits (69), Expect = 0.071
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 426 RAARTLGIIMGVFVFCWLPFF-LMYVSL 452
R A+TLG+++ V + CW P LM SL
Sbjct: 3 RLAKTLGLVLAVLLICWFPVLALMAHSL 30
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1,
membrane protein, signaling protein; NMR {Homo sapiens}
Length = 40
Score = 29.3 bits (65), Expect = 0.27
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 467 FITWLGYINSGINPIIYTIFNLDFRKSFKRLLN 499
F + L +NS +NPIIY + + D R +F+ +
Sbjct: 5 FASMLCLLNSTVNPIIYALRSKDLRHAFRSMFP 37
>2wdq_D Succinate dehydrogenase hydrophobic membrane ANCH subunit;
succinate dehydrogenase activity, cell inner membrane,
trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia
coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D*
2wp9_D* 2wu2_D* 2ws3_D* 2wu5_D*
Length = 115
Score = 27.5 bits (61), Expect = 4.4
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 31 SAFFNNIEYSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLAV 90
FF + + + T++ L +++I IG V+ LR++ IV V
Sbjct: 49 IGFFASA------FTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALV 102
Query: 91 ADLTVAIFVL 100
+ V+
Sbjct: 103 VYVIYGFVVV 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.403
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,345,899
Number of extensions: 427534
Number of successful extensions: 866
Number of sequences better than 10.0: 1
Number of HSP's gapped: 804
Number of HSP's successfully gapped: 43
Length of query: 507
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 409
Effective length of database: 3,965,535
Effective search space: 1621903815
Effective search space used: 1621903815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.9 bits)