RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy461
         (507 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 86.6 bits (213), Expect = 4e-19
 Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 8/208 (3%)

Query: 30  PSAFFNNIEYSVPEWEAIITMICLSTLIIGTIIGNIMVVISVFTYKPLRIVQNFFIVSLA 89
            S F     Y    W+  +    +  LI+     N + +     +K LR   N+ +++LA
Sbjct: 21  RSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLA 80

Query: 90  VADLTVAIFVLPLSLIYYLSGRWIFGIIICKIWLTSDVLCCTASILNLCAIALDRYWAIT 149
           VADL +       +L   L G ++FG   C +      L    ++ +L  +A++RY  + 
Sbjct: 81  VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVC 140

Query: 150 DPLVYAQQRTIKRVMMMIMYVWLLSALISSPPLIGW-------NDWPEVFEADTPCQLTQ 202
            P+    +      +M + + W+++   ++PPL+GW              +  TP + T 
Sbjct: 141 KPMSN-FRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETN 199

Query: 203 QRGYVVYSSLGSFFIPLAIMTLVYVEIF 230
              +V+Y  +  F IPL ++   Y ++ 
Sbjct: 200 NESFVIYMFVVHFIIPLIVIFFCYGQLV 227



 Score = 74.2 bits (181), Expect = 4e-15
 Identities = 16/77 (20%), Positives = 30/77 (38%)

Query: 422 SKERRAARTLGIIMGVFVFCWLPFFLMYVSLPFCDTCCMSDRLINFITWLGYINSGINPI 481
             E+   R + I++  F+ CWLP+  +   +            +    +    ++  NP+
Sbjct: 245 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPV 304

Query: 482 IYTIFNLDFRKSFKRLL 498
           IY + N  FR      L
Sbjct: 305 IYIMMNKQFRNCMVTTL 321


>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 222

 Score = 30.3 bits (68), Expect = 0.41
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 266 EPESISSENDTKSGKHKNKKRKKTKKKNVQKNNNNNNNSF 305
           +P S S+E   KSGK   K+  +T+ K  +K  +    SF
Sbjct: 150 DPSSKSTEIKWKSGKDMTKRSSQTQNKASRKRQHEEPESF 189


>d1d02a_ c.52.1.8 (A:) Restriction endonuclease MunI {Mycoplasma,
           unidentified species [TaxId: 2093]}
          Length = 197

 Score = 28.8 bits (64), Expect = 1.3
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 225 VYVEIFLATKKRLRDRAKASKLNIVKQTTL-HNVQKEVQSPLEPESISSENDTKSGKHKN 283
           V+  +F  TK  L ++ K  K N+  Q  L  +V KE+ +PL   S +    + +   +N
Sbjct: 25  VFNAVFEGTKYVLYEKPKHLK-NLYAQVVLPDDVIKEIFNPLIDLSTTQWGVSPAFAIEN 83

Query: 284 KKRKKT 289
            +  K 
Sbjct: 84  TETHKI 89


>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
           thermophilus [TaxId: 274]}
          Length = 1504

 Score = 29.4 bits (65), Expect = 1.3
 Identities = 23/175 (13%), Positives = 56/175 (32%), Gaps = 23/175 (13%)

Query: 225 VYVEIFLATKKRLRDRAKASKLNIVKQT-TLHNVQKEVQSPLEPESISSENDTKSGKHKN 283
           VY  + +   + +    ++  ++       +  + KE+      + +  E    S   + 
Sbjct: 430 VYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRA 489

Query: 284 KKRKKTKKKNVQKNNNNNNNSF-----------LRPVLINEDSMTDIQDLSSSSNKIAAR 332
           K RK+ +      ++ N                LRP++  +       DL+    ++  R
Sbjct: 490 KARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINR 549

Query: 333 NDNM------GEFVHINNNETTFTNKTISDDISLASIKSDKKPNNGNGCHVKTPV 381
           N+ +      G    I  NE     + +      A + + ++           P+
Sbjct: 550 NNRLKKLLAQGAPEIIIRNEKRMLQEAVD-----ALLDNGRRGAPVTNPGSDRPL 599


>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B
           (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 95

 Score = 25.8 bits (56), Expect = 4.6
 Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 190 EVFEADTPCQLTQQRGYVVYSSLGSFFIPLAIMTLVYVEIFLATKKRLRDRAKASKLNIV 249
           ++   +T   L ++    + S  G    P+A   L+Y        K L D     +  I 
Sbjct: 16  DIDPEETVKALKEK----IESEKGKDAFPVAGQKLIY------AGKILNDDTALKEYKID 65

Query: 250 KQTTLHNVQKEVQSPLEPESISSEN 274
           ++  +  +  + ++   P   + E+
Sbjct: 66  EKNFVVVMVTKPKAVSTPAPATLEH 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,818,386
Number of extensions: 83861
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 8
Length of query: 507
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 418
Effective length of database: 1,185,626
Effective search space: 495591668
Effective search space used: 495591668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.3 bits)