Query psy4612
Match_columns 112
No_of_seqs 59 out of 61
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 21:22:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09775 Keratin_assoc: Kerati 100.0 1.5E-60 3.2E-65 353.7 8.5 109 1-109 23-131 (131)
2 KOG4615|consensus 100.0 2.2E-32 4.7E-37 198.7 6.3 92 2-97 24-115 (122)
3 PF02687 FtsX: FtsX-like perme 75.6 18 0.0004 23.2 7.8 79 2-90 42-120 (121)
4 COG0577 SalY ABC-type antimicr 72.4 15 0.00034 27.4 5.9 35 3-37 332-366 (419)
5 PF13664 DUF4149: Domain of un 71.8 22 0.00047 23.6 6.1 66 20-86 6-88 (101)
6 TIGR03434 ADOP Acidobacterial 69.5 28 0.00061 30.6 7.8 79 2-91 316-395 (803)
7 COG4705 Uncharacterized membra 59.6 15 0.00033 30.5 4.1 43 20-65 142-185 (258)
8 COG2389 Uncharacterized metal- 59.4 18 0.00038 28.8 4.2 53 19-71 92-153 (179)
9 PF03219 TLC: TLC ATP/ADP tran 54.4 74 0.0016 28.0 7.6 43 18-67 157-199 (491)
10 PF04971 Lysis_S: Lysis protei 49.5 18 0.00039 24.7 2.5 29 6-37 26-54 (68)
11 PF10011 DUF2254: Predicted me 45.1 54 0.0012 27.4 5.2 27 4-30 85-111 (371)
12 PF01448 ELM2: ELM2 domain; I 44.1 7.7 0.00017 23.8 0.0 12 42-54 4-15 (55)
13 PF11522 Pik1: Yeast phosphati 43.5 25 0.00054 22.7 2.3 29 32-60 10-47 (51)
14 PRK10814 outer membrane-specif 38.7 2.1E+02 0.0046 23.1 7.9 25 5-29 312-336 (399)
15 PF11174 DUF2970: Protein of u 37.1 66 0.0014 20.8 3.6 28 9-36 27-54 (56)
16 PF08183 SpoV: Stage V sporula 34.9 44 0.00095 19.2 2.2 17 12-28 7-23 (26)
17 KOG0474|consensus 33.8 78 0.0017 30.1 4.8 52 14-81 343-394 (762)
18 PF10779 XhlA: Haemolysin XhlA 33.0 50 0.0011 21.5 2.6 16 13-28 54-69 (71)
19 TIGR02212 lolCE lipoprotein re 32.6 2.6E+02 0.0056 22.3 8.5 28 2-29 311-338 (411)
20 TIGR00769 AAA ADP/ATP carrier 32.2 3.5E+02 0.0076 23.7 8.3 20 48-67 165-184 (472)
21 TIGR03053 PS_I_psaM photosyste 31.2 55 0.0012 18.9 2.2 19 51-69 4-22 (29)
22 PF09335 SNARE_assoc: SNARE as 30.2 83 0.0018 20.8 3.4 24 12-35 4-27 (123)
23 PRK10535 macrolide transporter 30.0 1.7E+02 0.0038 26.0 6.2 34 3-36 568-601 (648)
24 PF11821 DUF3341: Protein of u 29.9 2.5E+02 0.0055 21.7 6.4 72 12-95 53-126 (173)
25 PF09988 DUF2227: Uncharacteri 29.6 1.3E+02 0.0029 23.2 4.8 21 51-71 134-154 (169)
26 PF05934 MCLC: Mid-1-related c 28.5 80 0.0017 29.1 3.9 49 40-91 175-235 (549)
27 PF14880 COX14: Cytochrome oxi 28.4 45 0.00097 21.3 1.7 21 65-85 11-31 (59)
28 PF13974 YebO: YebO-like prote 26.6 50 0.0011 23.1 1.8 19 75-93 7-25 (80)
29 PRK04989 psbM photosystem II r 26.5 72 0.0016 19.4 2.3 16 18-33 6-21 (35)
30 PF14946 DUF4501: Domain of un 26.4 79 0.0017 25.2 3.1 33 51-91 87-119 (180)
31 PRK14740 kdbF potassium-transp 26.3 1.3E+02 0.0028 17.7 3.2 22 12-33 2-23 (29)
32 COG4325 Predicted membrane pro 26.2 1.6E+02 0.0035 26.6 5.2 39 2-42 115-153 (464)
33 TIGR03038 PS_II_psbM photosyst 25.9 83 0.0018 18.9 2.4 17 17-33 5-21 (33)
34 PRK10720 uracil transporter; P 25.0 1.7E+02 0.0037 24.9 5.1 44 12-62 85-131 (428)
35 TIGR00835 agcS amino acid carr 24.9 2.4E+02 0.0051 24.7 6.0 38 48-85 166-203 (425)
36 PF01235 Na_Ala_symp: Sodium:a 24.8 3.4E+02 0.0073 23.8 6.9 39 48-86 139-177 (416)
37 PF07694 5TM-5TMR_LYT: 5TMR of 24.7 2.6E+02 0.0056 19.8 5.5 56 12-71 48-103 (169)
38 PF11286 DUF3087: Protein of u 24.4 2.9E+02 0.0062 21.6 5.8 50 3-60 10-63 (165)
39 PF07331 TctB: Tripartite tric 24.0 2.5E+02 0.0054 19.3 5.1 28 34-62 22-49 (141)
40 PRK11878 psaM photosystem I re 23.8 86 0.0019 18.8 2.2 20 51-70 8-27 (34)
41 PF07869 DUF1656: Protein of u 23.7 69 0.0015 20.4 2.0 25 49-73 9-33 (58)
42 PF01034 Syndecan: Syndecan do 23.1 31 0.00067 23.3 0.3 40 60-101 12-51 (64)
43 PRK11026 ftsX cell division AB 22.6 3.9E+02 0.0085 21.8 6.6 23 3-25 225-247 (309)
44 PF07907 YibE_F: YibE/F-like p 22.4 3.3E+02 0.0071 21.9 6.0 26 70-95 53-78 (244)
45 CHL00190 psaM photosystem I su 22.4 99 0.0021 18.1 2.2 19 51-69 5-23 (30)
46 PF04226 Transgly_assoc: Trans 22.3 2E+02 0.0043 17.6 4.2 12 16-27 5-16 (48)
47 CHL00080 psbM photosystem II p 22.1 99 0.0021 18.7 2.3 15 19-33 7-21 (34)
48 PRK15432 autoinducer 2 ABC tra 22.0 2.3E+02 0.005 23.6 5.2 11 60-70 300-310 (344)
49 COG5547 Small integral membran 21.7 1.1E+02 0.0024 20.7 2.6 19 14-32 9-27 (62)
50 PF07465 PsaM: Photosystem I p 21.0 1.1E+02 0.0025 17.7 2.3 19 51-69 4-22 (29)
51 PF13813 MBOAT_2: Membrane bou 20.9 71 0.0015 20.9 1.6 20 52-71 47-66 (83)
52 COG1115 AlsT Na+/alanine sympo 20.5 2.2E+02 0.0049 25.5 5.1 39 48-86 183-221 (452)
53 PF05151 PsbM: Photosystem II 20.3 1.2E+02 0.0027 17.9 2.4 16 18-33 6-21 (31)
54 PRK14127 cell division protein 20.3 49 0.0011 24.1 0.8 16 29-44 90-105 (109)
No 1
>PF09775 Keratin_assoc: Keratinocyte-associated protein 2; InterPro: IPR018614 Members of this family comprise various keratinocyte-associated proteins. The function of these proteins is not known.
Probab=100.00 E-value=1.5e-60 Score=353.68 Aligned_cols=109 Identities=58% Similarity=1.035 Sum_probs=103.1
Q ss_pred CccchhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHHHHhhccchhhhhHHHHHH
Q psy4612 1 MQMYRQWLSSSQLNTILGGLLGSLFFVFSLTGLGNLESTIFGKNFQTKLFPEVILCMLGAVMAAGMVHRVCATSCIMFSI 80 (112)
Q Consensus 1 mqm~~~~l~sS~~~ti~GGflgS~lF~~~LTavgN~e~~~fG~~fq~k~fpEv~lcl~ia~~as~~VHRVC~TTc~lFSl 80 (112)
|||||+||++||++||+|||+|||+|+|+|||+||+|+.+||+|||+||||||++||++|++|||+|||||+|||+|||+
T Consensus 23 mq~~k~~l~sS~~~ti~GGflgS~lF~~~LTavgN~e~~~fg~~~q~k~fpeV~~~l~ia~~as~~VHRVc~TTc~lFS~ 102 (131)
T PF09775_consen 23 MQMYKPWLASSQLLTILGGFLGSLLFIFLLTAVGNLEMLLFGKGFQAKLFPEVLLCLFIALIASGTVHRVCITTCFLFSL 102 (131)
T ss_pred HHHhHHHhccchHHHHHHHHHHHHHHHHHHHHhcchHHhhcCccccccchHHHHHHHHHHHHHHccchhhHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccceeecccccccccCCCcC
Q psy4612 81 IDLYYMNRISQKVHVQPIIQASQPTGGKK 109 (112)
Q Consensus 81 ~~lYyinkiS~~~y~~~~~~~~~~~~~~k 109 (112)
++|||+||||||+|+.+++++.+++||||
T Consensus 103 ~~LYylnkiS~k~y~~~~~~~~~~~~kkk 131 (131)
T PF09775_consen 103 VALYYLNKISQKTYSSPVPVPTPVSKKKK 131 (131)
T ss_pred HHHHHHHHHHHHhhCCCccccccccccCC
Confidence 99999999999999887777766554443
No 2
>KOG4615|consensus
Probab=99.97 E-value=2.2e-32 Score=198.67 Aligned_cols=92 Identities=45% Similarity=0.682 Sum_probs=87.8
Q ss_pred ccchhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHHHHhhccchhhhhHHHHHHH
Q psy4612 2 QMYRQWLSSSQLNTILGGLLGSLFFVFSLTGLGNLESTIFGKNFQTKLFPEVILCMLGAVMAAGMVHRVCATSCIMFSII 81 (112)
Q Consensus 2 qm~~~~l~sS~~~ti~GGflgS~lF~~~LTavgN~e~~~fG~~fq~k~fpEv~lcl~ia~~as~~VHRVC~TTc~lFSl~ 81 (112)
++|+..|+|||+.||+|||-+|++|+|+||++||+|+.. |...+| ..|+++..+|++|+|+|||||+||||+||..
T Consensus 24 eiyrgklasselftilggftssllflfsltfignfqess---giksgw-gavilaeiialiaagtvhrvcittcflfsag 99 (122)
T KOG4615|consen 24 EIYRGKLASSELFTILGGFTSSLLFLFSLTFIGNFQESS---GIKSGW-GAVILAEIIALIAAGTVHRVCITTCFLFSAG 99 (122)
T ss_pred HHHhccchhhHHHHHHhhhHHHHHHHHHHHhhccccccc---Ccccch-hHHHHHHHHHHHhcCceeehhhHHHHHhcch
Confidence 589999999999999999999999999999999999976 788999 8999999999999999999999999999999
Q ss_pred HHHHHhhcccceeecc
Q psy4612 82 DLYYMNRISQKVHVQP 97 (112)
Q Consensus 82 ~lYyinkiS~~~y~~~ 97 (112)
.||++||||..+.+.+
T Consensus 100 llyevnkisgymlskt 115 (122)
T KOG4615|consen 100 LLYEVNKISGYMLSKT 115 (122)
T ss_pred Hhhhhhhhhceeeecc
Confidence 9999999999887654
No 3
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=75.62 E-value=18 Score=23.15 Aligned_cols=79 Identities=24% Similarity=0.338 Sum_probs=43.1
Q ss_pred ccchhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHHHHhhccchhhhhHHHHHHH
Q psy4612 2 QMYRQWLSSSQLNTILGGLLGSLFFVFSLTGLGNLESTIFGKNFQTKLFPEVILCMLGAVMAAGMVHRVCATSCIMFSII 81 (112)
Q Consensus 2 qm~~~~l~sS~~~ti~GGflgS~lF~~~LTavgN~e~~~fG~~fq~k~fpEv~lcl~ia~~as~~VHRVC~TTc~lFSl~ 81 (112)
|+.+..+...-+..+.|..+|..+.....-...|.-....+.+.....-|+.++-..+ ++...+++.+..
T Consensus 42 ~i~~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~~ 111 (121)
T PF02687_consen 42 QIRKMFLYEALLIALIGILIGILLGILLIIFLINFLSKFFGDSFPFTISPWSFLIVFI----------IILLISIIASLI 111 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeCHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3445556666667777777776666666666666544333333333332222222221 344456677777
Q ss_pred HHHHHhhcc
Q psy4612 82 DLYYMNRIS 90 (112)
Q Consensus 82 ~lYyinkiS 90 (112)
..+.+.|++
T Consensus 112 ~~~~~~k~~ 120 (121)
T PF02687_consen 112 PIRRILKIN 120 (121)
T ss_pred HHHHHHCCC
Confidence 777776654
No 4
>COG0577 SalY ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=72.43 E-value=15 Score=27.41 Aligned_cols=35 Identities=29% Similarity=0.275 Sum_probs=27.6
Q ss_pred cchhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhh
Q psy4612 3 MYRQWLSSSQLNTILGGLLGSLFFVFSLTGLGNLE 37 (112)
Q Consensus 3 m~~~~l~sS~~~ti~GGflgS~lF~~~LTavgN~e 37 (112)
+...++..+-..+++||++|..+.++....+....
T Consensus 332 i~~~~~~e~~~~~~~g~~~g~~~~~~~~~~i~~~~ 366 (419)
T COG0577 332 ILLQFLLEALILGLIGGLLGILLGLGLSLLLALLL 366 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888899999999999987777776664
No 5
>PF13664 DUF4149: Domain of unknown function (DUF4149)
Probab=71.81 E-value=22 Score=23.62 Aligned_cols=66 Identities=21% Similarity=0.375 Sum_probs=38.9
Q ss_pred HHHHHHH---HHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHHHHhhccc--------------hhhhhHHHHHHHH
Q psy4612 20 LLGSLFF---VFSLTGLGNLESTIFGKNFQTKLFPEVILCMLGAVMAAGMVHR--------------VCATSCIMFSIID 82 (112)
Q Consensus 20 flgS~lF---~~~LTavgN~e~~~fG~~fq~k~fpEv~lcl~ia~~as~~VHR--------------VC~TTc~lFSl~~ 82 (112)
.+|+.+| +..-+...|+.+..+| ..|.++||--.....+........++ .+...+++.++..
T Consensus 6 w~G~~~~~~fvvap~lF~~L~~~~ag-~i~~~lFp~y~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (101)
T PF13664_consen 6 WLGSMVFFTFVVAPVLFKALPRQQAG-KIQGKLFPKYFYLGLACAAVLLLTSLALHKGSGNANRWQLLLLLVMLLLTLLN 84 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444444 5556777888888877 58889998765444444433333333 5555555555555
Q ss_pred HHHH
Q psy4612 83 LYYM 86 (112)
Q Consensus 83 lYyi 86 (112)
.+|+
T Consensus 85 ~~~l 88 (101)
T PF13664_consen 85 AFYL 88 (101)
T ss_pred HHHH
Confidence 4443
No 6
>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Probab=69.49 E-value=28 Score=30.58 Aligned_cols=79 Identities=22% Similarity=0.254 Sum_probs=42.4
Q ss_pred ccchhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHH-HHHHHHHHHHhhccchhhhhHHHHHH
Q psy4612 2 QMYRQWLSSSQLNTILGGLLGSLFFVFSLTGLGNLESTIFGKNFQTKLFPEVI-LCMLGAVMAAGMVHRVCATSCIMFSI 80 (112)
Q Consensus 2 qm~~~~l~sS~~~ti~GGflgS~lF~~~LTavgN~e~~~fG~~fq~k~fpEv~-lcl~ia~~as~~VHRVC~TTc~lFSl 80 (112)
|+.+..+..+-+..++|+.+|-++-.+..-.++++-..-++......+-|..+ +++.++ +-+++++++
T Consensus 316 ~i~~~~l~E~~~l~~~~~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~ 384 (803)
T TIGR03434 316 RLVRQLLTESLLLALAGGALGLLLAYWGLRLLLALLPASLPRLAEISLDGRVLLFALALS-----------LLTGLLFGL 384 (803)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccceecccCHHHHHHHHHHH-----------HHHHHHHHH
Confidence 45566777778888889888887666655555443111111100112223322 222222 225567777
Q ss_pred HHHHHHhhccc
Q psy4612 81 IDLYYMNRISQ 91 (112)
Q Consensus 81 ~~lYyinkiS~ 91 (112)
.-.+.+.|++-
T Consensus 385 ~p~~~~~~~~p 395 (803)
T TIGR03434 385 APALQATRSDL 395 (803)
T ss_pred HHHHHHhCcCH
Confidence 77787777663
No 7
>COG4705 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=59.58 E-value=15 Score=30.50 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH-HhhhhhhhhhhccccccchhhHHHHHHHHHHHHHh
Q psy4612 20 LLGSLFFVFSL-TGLGNLESTIFGKNFQTKLFPEVILCMLGAVMAAG 65 (112)
Q Consensus 20 flgS~lF~~~L-TavgN~e~~~fG~~fq~k~fpEv~lcl~ia~~as~ 65 (112)
|=+..+|-++| ||.|.+-.+.+|-|||.+- ++++.+||++|++
T Consensus 142 YW~AIl~s~sLGTA~GD~ltes~glgy~~g~---lv~~~vIaliaaa 185 (258)
T COG4705 142 YWLAILFSNSLGTAAGDFLTESLGLGYIQGA---LVFAGVIALIAAA 185 (258)
T ss_pred HHHHHHHhcchhhhhHHHHHhhcCchhhhhh---HHHHHHHHHHHHH
Confidence 44566777766 8999999999999999985 6888899998764
No 8
>COG2389 Uncharacterized metal-binding protein [General function prediction only]
Probab=59.35 E-value=18 Score=28.85 Aligned_cols=53 Identities=23% Similarity=0.292 Sum_probs=32.8
Q ss_pred HHHHHHHHHH---HHHhhhhhhhhh-hccccccch-----hhHHHHHHHHHHHHHhhccchh
Q psy4612 19 GLLGSLFFVF---SLTGLGNLESTI-FGKNFQTKL-----FPEVILCMLGAVMAAGMVHRVC 71 (112)
Q Consensus 19 GflgS~lF~~---~LTavgN~e~~~-fG~~fq~k~-----fpEv~lcl~ia~~as~~VHRVC 71 (112)
=|+||++|++ .++.+.-+...= =+-|++--- --|.++.++..+.+|.+-|-|+
T Consensus 92 ~YL~s~l~l~~~~I~~vv~~l~~~~l~~l~~~ip~~~~~~~~~~ll~l~~Gl~vs~~~H~vs 153 (179)
T COG2389 92 LYLGSILFLLYFAILGVVSKLGKLPLTLLSFDIPRINLFLKSEELLFLFAGLEVSAMLHIVS 153 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999998 556554332210 011111100 0178999999999999999775
No 9
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=54.45 E-value=74 Score=28.01 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHHHHhhc
Q psy4612 18 GGLLGSLFFVFSLTGLGNLESTIFGKNFQTKLFPEVILCMLGAVMAAGMV 67 (112)
Q Consensus 18 GGflgS~lF~~~LTavgN~e~~~fG~~fq~k~fpEv~lcl~ia~~as~~V 67 (112)
|-.+=|++|--+.--+-|.|+.= +++|=+-+.--+++++||.+
T Consensus 157 gsvvlSlLFW~fAN~itt~~eAK-------RfYpl~g~ganigli~sG~~ 199 (491)
T PF03219_consen 157 GSVVLSLLFWGFANEITTVEEAK-------RFYPLFGLGANIGLIFSGQL 199 (491)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 33444455544444444555543 56787777777777776654
No 10
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=49.54 E-value=18 Score=24.75 Aligned_cols=29 Identities=45% Similarity=0.570 Sum_probs=20.0
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHHHHhhhhhh
Q psy4612 6 QWLSSSQLNTILGGLLGSLFFVFSLTGLGNLE 37 (112)
Q Consensus 6 ~~l~sS~~~ti~GGflgS~lF~~~LTavgN~e 37 (112)
+++..+||.-| |.+||++| =+||++-|+.
T Consensus 26 d~~sp~qW~aI--Gvi~gi~~-~~lt~ltN~Y 54 (68)
T PF04971_consen 26 DQFSPSQWAAI--GVIGGIFF-GLLTYLTNLY 54 (68)
T ss_pred hccCcccchhH--HHHHHHHH-HHHHHHhHhh
Confidence 56677788865 56666554 4578888874
No 11
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=45.13 E-value=54 Score=27.41 Aligned_cols=27 Identities=15% Similarity=0.534 Sum_probs=19.4
Q ss_pred chhhhhhhchHHHHHHHHHHHHHHHHH
Q psy4612 4 YRQWLSSSQLNTILGGLLGSLFFVFSL 30 (112)
Q Consensus 4 ~~~~l~sS~~~ti~GGflgS~lF~~~L 30 (112)
.+.++.+.-....+|-|+|+.+|-++.
T Consensus 85 l~~f~~d~~~q~vLg~Figtfvy~l~~ 111 (371)
T PF10011_consen 85 LRNFMRDRVTQVVLGTFIGTFVYSLLV 111 (371)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 455666677778899999997765443
No 12
>PF01448 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex []. The domain is usually found to the N terminus of a myb-like DNA binding domain and a GATA binding domain. ELM2, in some instances, is also found associated with the ARID DNA binding domain IPR001606 from INTERPRO. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Probab=44.07 E-value=7.7 Score=23.85 Aligned_cols=12 Identities=33% Similarity=0.974 Sum_probs=10.1
Q ss_pred ccccccchhhHHH
Q psy4612 42 GKNFQTKLFPEVI 54 (112)
Q Consensus 42 G~~fq~k~fpEv~ 54 (112)
|..|||.+ ||..
T Consensus 4 G~~yQA~I-P~~~ 15 (55)
T PF01448_consen 4 GPEYQAEI-PELL 15 (55)
T ss_pred CCccCCcC-CCCc
Confidence 89999998 8854
No 13
>PF11522 Pik1: Yeast phosphatidylinositol-4-OH kinase Pik1; InterPro: IPR021601 Pik1 is a regulator of membrane traffic and participates in the mating-pheromone signal-transduction cascade. The protein is localised to the nucleus and cytoplasm in the Golgi. Pik1 is thought to have an actin-independent role in membrane transport []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2JU0_B.
Probab=43.47 E-value=25 Score=22.68 Aligned_cols=29 Identities=21% Similarity=0.583 Sum_probs=18.3
Q ss_pred hhhhhhhhhhccc---------cccchhhHHHHHHHHH
Q psy4612 32 GLGNLESTIFGKN---------FQTKLFPEVILCMLGA 60 (112)
Q Consensus 32 avgN~e~~~fG~~---------fq~k~fpEv~lcl~ia 60 (112)
.++++|..+|+.+ |+-.+.|..++|=.++
T Consensus 10 v~NklQ~ilFn~~~~~~~~~~k~~ENv~PalVL~s~v~ 47 (51)
T PF11522_consen 10 VINKLQHILFNTSSSDISKQQKFRENVLPALVLCSAVL 47 (51)
T ss_dssp HHHHHT--SS-SS-----TT--SS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccccccccccccccchHHHHHHHHH
Confidence 4788999999988 4556678888775544
No 14
>PRK10814 outer membrane-specific lipoprotein transporter subunit LolC; Provisional
Probab=38.66 E-value=2.1e+02 Score=23.14 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=15.6
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHH
Q psy4612 5 RQWLSSSQLNTILGGLLGSLFFVFS 29 (112)
Q Consensus 5 ~~~l~sS~~~ti~GGflgS~lF~~~ 29 (112)
+-.+..+-+..++||.+|.++=.++
T Consensus 312 ~~~~~E~~~~~~~G~~~G~~lg~~l 336 (399)
T PRK10814 312 MVFMVQGASAGIIGALLGALLGALL 336 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555677778888777664433
No 15
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=37.13 E-value=66 Score=20.80 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=23.5
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHhhhhh
Q psy4612 9 SSSQLNTILGGLLGSLFFVFSLTGLGNL 36 (112)
Q Consensus 9 ~sS~~~ti~GGflgS~lF~~~LTavgN~ 36 (112)
..+.+.-|+.|.++..+|+..|-.+=|+
T Consensus 27 ~~~p~~~Ii~gii~~~~fV~~Lv~lV~~ 54 (56)
T PF11174_consen 27 QGSPVHFIIVGIILAALFVAGLVLLVNL 54 (56)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999998776553
No 16
>PF08183 SpoV: Stage V sporulation protein family; InterPro: IPR012609 This family consists of the stage V sporulation (SpoV) proteins of Bacillus subtilis which includes SpoVM. SpoVM is an small, 26 residue-long protein that is produced in the mother cell chamber of the sporangium during the process of sporulation in B. subtilis. SpoVM forms an amphipathic alpha-helix and is recruited to the polar septum shortly after the sporangium undergoes asymmetric division. The function of SpoVM depends on proper subcellular localisation [].
Probab=34.85 E-value=44 Score=19.16 Aligned_cols=17 Identities=41% Similarity=0.893 Sum_probs=13.4
Q ss_pred chHHHHHHHHHHHHHHH
Q psy4612 12 QLNTILGGLLGSLFFVF 28 (112)
Q Consensus 12 ~~~ti~GGflgS~lF~~ 28 (112)
++.-.+||+++.+||-|
T Consensus 7 KLpkf~Gg~v~~~L~sf 23 (26)
T PF08183_consen 7 KLPKFLGGVVRALLFSF 23 (26)
T ss_pred echHHHhHHHHHHHHHH
Confidence 34567899999999865
No 17
>KOG0474|consensus
Probab=33.77 E-value=78 Score=30.12 Aligned_cols=52 Identities=29% Similarity=0.502 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHHHHhhccchhhhhHHHHHHH
Q psy4612 14 NTILGGLLGSLFFVFSLTGLGNLESTIFGKNFQTKLFPEVILCMLGAVMAAGMVHRVCATSCIMFSII 81 (112)
Q Consensus 14 ~ti~GGflgS~lF~~~LTavgN~e~~~fG~~fq~k~fpEv~lcl~ia~~as~~VHRVC~TTc~lFSl~ 81 (112)
.-++||.|||+.=-+ |+....|=++++.+=.-.|+.|+.+|+ +|+|+.|-+.
T Consensus 343 iGViGGlLGalfN~L------n~~~~~~r~~~~k~k~~kvlea~~Vs~----------~ts~~af~l~ 394 (762)
T KOG0474|consen 343 IGVIGGLLGALFNYL------NLKKVLRRYNYEKGKIGKVLEALLVSL----------VTSVLAFGLP 394 (762)
T ss_pred eehhhhhHHHHHHHH------HHHHHHHHHhccCchHHHHHHHHHHHH----------HHHHHHhhhH
Confidence 346899999975333 445555555555444468888888885 5778888877
No 18
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=33.02 E-value=50 Score=21.46 Aligned_cols=16 Identities=19% Similarity=0.694 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHH
Q psy4612 13 LNTILGGLLGSLFFVF 28 (112)
Q Consensus 13 ~~ti~GGflgS~lF~~ 28 (112)
++++.|++++.++.++
T Consensus 54 ~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 54 WRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5788888888876554
No 19
>TIGR02212 lolCE lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC.
Probab=32.58 E-value=2.6e+02 Score=22.31 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=19.3
Q ss_pred ccchhhhhhhchHHHHHHHHHHHHHHHH
Q psy4612 2 QMYRQWLSSSQLNTILGGLLGSLFFVFS 29 (112)
Q Consensus 2 qm~~~~l~sS~~~ti~GGflgS~lF~~~ 29 (112)
|+.+-.+..+-+.+++||.+|.++=.++
T Consensus 311 ~I~~~~l~E~~~l~l~g~~~G~~lg~~~ 338 (411)
T TIGR02212 311 QIMRIFIVQGLLIGVIGTLLGVILGVLL 338 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567777788889888886654443
No 20
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=32.16 E-value=3.5e+02 Score=23.74 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=13.8
Q ss_pred chhhHHHHHHHHHHHHHhhc
Q psy4612 48 KLFPEVILCMLGAVMAAGMV 67 (112)
Q Consensus 48 k~fpEv~lcl~ia~~as~~V 67 (112)
++||=+-+.--++++++|.+
T Consensus 165 Rfy~l~~~ganlg~i~sg~~ 184 (472)
T TIGR00769 165 RFYALFGLGANVALIFSGRT 184 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66777777667777777644
No 21
>TIGR03053 PS_I_psaM photosystem I reaction center subunit XII. Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. The seed alignment for this model includes sequences from Pfam model pfam07465 and additional sequences, as from Prochlorococcus.
Probab=31.15 E-value=55 Score=18.91 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHhhccc
Q psy4612 51 PEVILCMLGAVMAAGMVHR 69 (112)
Q Consensus 51 pEv~lcl~ia~~as~~VHR 69 (112)
.+|++||++|++++-.--|
T Consensus 4 ~Qi~iaL~~Al~~~iLA~r 22 (29)
T TIGR03053 4 SQIFIALVIALIAGILALR 22 (29)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3788999999987754433
No 22
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=30.23 E-value=83 Score=20.77 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=14.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhh
Q psy4612 12 QLNTILGGLLGSLFFVFSLTGLGN 35 (112)
Q Consensus 12 ~~~ti~GGflgS~lF~~~LTavgN 35 (112)
++.++.+|++.+..-.++++.+|+
T Consensus 4 ~~~~~~~g~~~g~~~~~~~~~~g~ 27 (123)
T PF09335_consen 4 SILLIAAGALFGPWLGFLIATLGA 27 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666555555555555
No 23
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=29.96 E-value=1.7e+02 Score=26.04 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=26.2
Q ss_pred cchhhhhhhchHHHHHHHHHHHHHHHHHHhhhhh
Q psy4612 3 MYRQWLSSSQLNTILGGLLGSLFFVFSLTGLGNL 36 (112)
Q Consensus 3 m~~~~l~sS~~~ti~GGflgS~lF~~~LTavgN~ 36 (112)
+...+|..|-+.+++||.+|.++=+.....++++
T Consensus 568 I~~qFL~Es~~l~~~GGiiGi~lg~~~~~~~~~~ 601 (648)
T PRK10535 568 VLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLF 601 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999998877666666543
No 24
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=29.91 E-value=2.5e+02 Score=21.68 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhh--hhhhhhccccccchhhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHhhc
Q psy4612 12 QLNTILGGLLGSLFFVFSLTGLGN--LESTIFGKNFQTKLFPEVILCMLGAVMAAGMVHRVCATSCIMFSIIDLYYMNRI 89 (112)
Q Consensus 12 ~~~ti~GGflgS~lF~~~LTavgN--~e~~~fG~~fq~k~fpEv~lcl~ia~~as~~VHRVC~TTc~lFSl~~lYyinki 89 (112)
.+.+++||..|...-+++....+. .-..+-||.+. .|-+=|.+.-=++...|+ +..+++.+.+||+
T Consensus 53 ~~~~l~~Gl~G~~~~~~l~~~t~~~dyP~~iGGKP~~-S~Pafipi~FEltVL~aa-----------~~~~~g~l~~~~L 120 (173)
T PF11821_consen 53 PWIALVGGLTGFATAFLLQWYTNAVDYPLNIGGKPLF-SWPAFIPITFELTVLFAA-----------LGTVLGMLILNGL 120 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccceecCCCCCC-CCcccchHHHHHHHHHHH-----------HHHHHHHHHHcCC
Confidence 578899999988776665555444 35677788777 463444443333433332 4455677788998
Q ss_pred ccceee
Q psy4612 90 SQKVHV 95 (112)
Q Consensus 90 S~~~y~ 95 (112)
....+.
T Consensus 121 p~~~~p 126 (173)
T PF11821_consen 121 PRLYHP 126 (173)
T ss_pred CCCCCC
Confidence 887663
No 25
>PF09988 DUF2227: Uncharacterized metal-binding protein (DUF2227); InterPro: IPR019250 This entry represents hypothetical bacterial proteins that possess metal binding properties; however, their exact function has not yet been determined.
Probab=29.61 E-value=1.3e+02 Score=23.19 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHhhccchh
Q psy4612 51 PEVILCMLGAVMAAGMVHRVC 71 (112)
Q Consensus 51 pEv~lcl~ia~~as~~VHRVC 71 (112)
||.+++.++.+.+|++.|=++
T Consensus 134 ~~~~~a~~~Gl~l~~~~H~i~ 154 (169)
T PF09988_consen 134 PEELLAFLIGLELGAWLHLIS 154 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999553
No 26
>PF05934 MCLC: Mid-1-related chloride channel (MCLC); InterPro: IPR009231 This entry consists of several Chloride channel CLIC-like proteins, which function as a chloride channel when incorporated in the planar lipid bilayer [].
Probab=28.55 E-value=80 Score=29.07 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=29.6
Q ss_pred hhccccccchhhHHHHH-HHHHHHHH----------hhccchhhhhHHHHHHHHH-HHHhhccc
Q psy4612 40 IFGKNFQTKLFPEVILC-MLGAVMAA----------GMVHRVCATSCIMFSIIDL-YYMNRISQ 91 (112)
Q Consensus 40 ~fG~~fq~k~fpEv~lc-l~ia~~as----------~~VHRVC~TTc~lFSl~~l-YyinkiS~ 91 (112)
.||=+-.+.+ .|++| +.|.+++| .-.+|+ .-+||++|+++= +|+-|+..
T Consensus 175 ~fGVD~~t~l--~v~l~lL~IV~iVAteLwt~V~W~~Ql~R~-fvisFLiS~~WNWiyLYK~Af 235 (549)
T PF05934_consen 175 TFGVDPYTVL--MVLLCLLCIVAIVATELWTYVSWFTQLRRM-FVISFLISFGWNWIYLYKEAF 235 (549)
T ss_pred ccCCchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4566666654 77777 33333333 234777 567999999874 35555543
No 27
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=28.44 E-value=45 Score=21.27 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=17.2
Q ss_pred hhccchhhhhHHHHHHHHHHH
Q psy4612 65 GMVHRVCATSCIMFSIIDLYY 85 (112)
Q Consensus 65 ~~VHRVC~TTc~lFSl~~lYy 85 (112)
=.+||.-+.+|+.|++.+-+.
T Consensus 11 D~~HR~tV~~Lig~T~~~g~~ 31 (59)
T PF14880_consen 11 DIAHRTTVLGLIGFTVYGGGL 31 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999977654
No 28
>PF13974 YebO: YebO-like protein
Probab=26.58 E-value=50 Score=23.13 Aligned_cols=19 Identities=21% Similarity=0.567 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhcccce
Q psy4612 75 CIMFSIIDLYYMNRISQKV 93 (112)
Q Consensus 75 c~lFSl~~lYyinkiS~~~ 93 (112)
.++.+++..||+||-|...
T Consensus 7 ~~lv~livWFFVnRaSvRA 25 (80)
T PF13974_consen 7 VLLVGLIVWFFVNRASVRA 25 (80)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 4578899999999999653
No 29
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=26.54 E-value=72 Score=19.36 Aligned_cols=16 Identities=38% Similarity=0.521 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhh
Q psy4612 18 GGLLGSLFFVFSLTGL 33 (112)
Q Consensus 18 GGflgS~lF~~~LTav 33 (112)
-||+.++||++.=|++
T Consensus 6 lgfiAt~Lfi~iPt~F 21 (35)
T PRK04989 6 LGFVASLLFVLVPTVF 21 (35)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5899999999877664
No 30
>PF14946 DUF4501: Domain of unknown function (DUF4501)
Probab=26.38 E-value=79 Score=25.25 Aligned_cols=33 Identities=18% Similarity=0.471 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHhhccc
Q psy4612 51 PEVILCMLGAVMAAGMVHRVCATSCIMFSIIDLYYMNRISQ 91 (112)
Q Consensus 51 pEv~lcl~ia~~as~~VHRVC~TTc~lFSl~~lYyinkiS~ 91 (112)
|.|..+|++--+ -|+.++|+|+...||+.|-|.
T Consensus 87 P~vAASL~LgTf--------fIS~~LilSvA~FFYLKrs~k 119 (180)
T PF14946_consen 87 PQVAASLFLGTF--------FISLGLILSVASFFYLKRSSK 119 (180)
T ss_pred hhHHHHHHHHHH--------HHHHHHHHHHhhheeeccccc
Confidence 888888877554 367789999999999976554
No 31
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=26.34 E-value=1.3e+02 Score=17.65 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhh
Q psy4612 12 QLNTILGGLLGSLFFVFSLTGL 33 (112)
Q Consensus 12 ~~~ti~GGflgS~lF~~~LTav 33 (112)
.|+.-++|.+...||+-++-|+
T Consensus 2 ~~~~wls~a~a~~Lf~YLv~AL 23 (29)
T PRK14740 2 TVLDWLSLALATGLFVYLLVAL 23 (29)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999998876
No 32
>COG4325 Predicted membrane protein [Function unknown]
Probab=26.17 E-value=1.6e+02 Score=26.62 Aligned_cols=39 Identities=26% Similarity=0.374 Sum_probs=27.6
Q ss_pred ccchhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q psy4612 2 QMYRQWLSSSQLNTILGGLLGSLFFVFSLTGLGNLESTIFG 42 (112)
Q Consensus 2 qm~~~~l~sS~~~ti~GGflgS~lF~~~LTavgN~e~~~fG 42 (112)
+|-+.++.++-..+.+|-|+|. |+++|+.+--+-+.--|
T Consensus 115 Rll~~fmrd~~nqvvLa~Flct--Fvysl~vlrtvg~e~d~ 153 (464)
T COG4325 115 RLLRTFLRDVPNQVVLAIFLCT--FVYSLGVLRTVGEERDG 153 (464)
T ss_pred HHHHHHhhcCchHHHHHHHHHH--HHHHHHHHHHhhhccCc
Confidence 3456777888888999999997 56666666665555434
No 33
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=25.91 E-value=83 Score=18.88 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy4612 17 LGGLLGSLFFVFSLTGL 33 (112)
Q Consensus 17 ~GGflgS~lF~~~LTav 33 (112)
..||+.++||++.=|++
T Consensus 5 ~l~fiAt~Lfi~iPt~F 21 (33)
T TIGR03038 5 ILGFIATLLFILVPTVF 21 (33)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46999999999877764
No 34
>PRK10720 uracil transporter; Provisional
Probab=24.95 E-value=1.7e+02 Score=24.94 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhh---hhhhhhccccccchhhHHHHHHHHHHH
Q psy4612 12 QLNTILGGLLGSLFFVFSLTGLGN---LESTIFGKNFQTKLFPEVILCMLGAVM 62 (112)
Q Consensus 12 ~~~ti~GGflgS~lF~~~LTavgN---~e~~~fG~~fq~k~fpEv~lcl~ia~~ 62 (112)
.|.+.+|+.+-|-++.++|+.+.. .|... ++||.++...+++++
T Consensus 85 ~~~~~lgav~v~Glv~ills~~~~~~g~~~l~-------~~fPp~v~G~~i~lI 131 (428)
T PRK10720 85 GYEVALGGFIMCGVLFCLVALIVKKAGTGWLD-------VLFPPAAMGAIVAVI 131 (428)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HhCChHHHHHHHHHH
Confidence 466778887766666666666421 22333 567777766666554
No 35
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=24.93 E-value=2.4e+02 Score=24.69 Aligned_cols=38 Identities=26% Similarity=0.524 Sum_probs=30.7
Q ss_pred chhhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHH
Q psy4612 48 KLFPEVILCMLGAVMAAGMVHRVCATSCIMFSIIDLYY 85 (112)
Q Consensus 48 k~fpEv~lcl~ia~~as~~VHRVC~TTc~lFSl~~lYy 85 (112)
.|..-+++++..+.+..|-++||.--+..+..+.++.|
T Consensus 166 ~~v~~i~l~~l~~~vi~GGik~Ia~v~~~lvP~m~~~Y 203 (425)
T TIGR00835 166 KLVTGIVLTVLTALIIFGGLKRIAKISSVVVPFMALLY 203 (425)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 46667777888888899999999999888888766655
No 36
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=24.79 E-value=3.4e+02 Score=23.78 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=31.7
Q ss_pred chhhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHH
Q psy4612 48 KLFPEVILCMLGAVMAAGMVHRVCATSCIMFSIIDLYYM 86 (112)
Q Consensus 48 k~fpEv~lcl~ia~~as~~VHRVC~TTc~lFSl~~lYyi 86 (112)
.|.-.+++...+++++-|-+||+.-.+..+=.+.++-|+
T Consensus 139 ~~~~gi~l~~l~~~vi~GGikrI~~v~~~lVP~Ma~~Yi 177 (416)
T PF01235_consen 139 PWITGIILAILVALVIFGGIKRIAKVSEKLVPFMAILYI 177 (416)
T ss_pred HHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHH
Confidence 566788888889999999999999988877776665554
No 37
>PF07694 5TM-5TMR_LYT: 5TMR of 5TMR-LYT; InterPro: IPR011620 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the transmembrane region of the 5TM-Lyt (5TM Receptors of the LytS-YhcK type) histidine kinase []. The two-component regulatory system LytS/LytT probably regulates genes involved in cell wall metabolism. ; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0007047 cellular cell wall organization, 0016021 integral to membrane
Probab=24.68 E-value=2.6e+02 Score=19.77 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHHHHhhccchh
Q psy4612 12 QLNTILGGLLGSLFFVFSLTGLGNLESTIFGKNFQTKLFPEVILCMLGAVMAAGMVHRVC 71 (112)
Q Consensus 12 ~~~ti~GGflgS~lF~~~LTavgN~e~~~fG~~fq~k~fpEv~lcl~ia~~as~~VHRVC 71 (112)
.+..+++|+.|..+--+..+.+..+.+..+|. .+ .+|-.+..+.+ .+.++.++|..
T Consensus 48 ~i~iil~~lygG~~~~li~~~i~~~~R~~~gg--~~-~~~~~i~~~~~-~i~~~l~~~~~ 103 (169)
T PF07694_consen 48 FIPIILAGLYGGPISGLIAGLIIGIYRFLLGG--PT-AIPAFIIIILI-GILAGLISRFF 103 (169)
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHHHHHhcC--ch-HHHHHHHHHHH-HHHHHHHHHHH
Confidence 45677888888888888888888888888886 22 22444444333 33445554433
No 38
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=24.41 E-value=2.9e+02 Score=21.65 Aligned_cols=50 Identities=34% Similarity=0.385 Sum_probs=30.9
Q ss_pred cchhhhhhhchHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc----ccccchhhHHHHHHHHH
Q psy4612 3 MYRQWLSSSQLNTILGGLLGSLFFVFSLTGLGNLESTIFGK----NFQTKLFPEVILCMLGA 60 (112)
Q Consensus 3 m~~~~l~sS~~~ti~GGflgS~lF~~~LTavgN~e~~~fG~----~fq~k~fpEv~lcl~ia 60 (112)
.||+.++-+-+.-+.+=.+.|+.|=-+|+++ ||. +|.-.+ -.|++++++.
T Consensus 10 ~YRk~~n~v~~~~v~~lai~sl~~s~llI~l-------Fg~~~~~nf~~Nl-lGVil~~~~~ 63 (165)
T PF11286_consen 10 RYRKHLNRVIVACVASLAILSLAFSQLLIAL-------FGGESGGNFHWNL-LGVILGLLLT 63 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCCCCCceeeeH-HHHHHHHHHH
Confidence 4777777666665555556666665555543 555 888888 4666655443
No 39
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=23.99 E-value=2.5e+02 Score=19.30 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=15.3
Q ss_pred hhhhhhhhccccccchhhHHHHHHHHHHH
Q psy4612 34 GNLESTIFGKNFQTKLFPEVILCMLGAVM 62 (112)
Q Consensus 34 gN~e~~~fG~~fq~k~fpEv~lcl~ia~~ 62 (112)
.+++..-.+ +.+++.||-++..+.+.+.
T Consensus 22 ~~~~~~~~~-~~gp~~fP~~l~~~l~~~~ 49 (141)
T PF07331_consen 22 FQIPSFPSG-SPGPGFFPRLLGILLLILS 49 (141)
T ss_pred HcCCccccC-CCCChHHHHHHHHHHHHHH
Confidence 444443333 5667777776665555443
No 40
>PRK11878 psaM photosystem I reaction center subunit XII; Reviewed
Probab=23.79 E-value=86 Score=18.78 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHhhccch
Q psy4612 51 PEVILCMLGAVMAAGMVHRV 70 (112)
Q Consensus 51 pEv~lcl~ia~~as~~VHRV 70 (112)
.+|++||++|++++-.--|-
T Consensus 8 ~Qi~iaL~~Al~~giLA~RL 27 (34)
T PRK11878 8 TQVFVALVVALHAGVLALRL 27 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47899999999887554443
No 41
>PF07869 DUF1656: Protein of unknown function (DUF1656); InterPro: IPR012451 The proteins in this entry have no known function and belong to the AaeX family.
Probab=23.67 E-value=69 Score=20.37 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHHhhccchhhh
Q psy4612 49 LFPEVILCMLGAVMAAGMVHRVCAT 73 (112)
Q Consensus 49 ~fpEv~lcl~ia~~as~~VHRVC~T 73 (112)
++|-.+++..+|.+....+||+-.=
T Consensus 9 y~P~ll~~~~~A~~l~~~l~~ll~r 33 (58)
T PF07869_consen 9 YFPPLLVYALLALLLTLLLRRLLAR 33 (58)
T ss_pred eHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999887543
No 42
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=23.11 E-value=31 Score=23.30 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=2.9
Q ss_pred HHHHHhhccchhhhhHHHHHHHHHHHHhhcccceeecccccc
Q psy4612 60 AVMAAGMVHRVCATSCIMFSIIDLYYMNRISQKVHVQPIIQA 101 (112)
Q Consensus 60 a~~as~~VHRVC~TTc~lFSl~~lYyinkiS~~~y~~~~~~~ 101 (112)
|.+++|.| |++-.+++.=+..+|.+-|-..-.|+...+.+
T Consensus 12 aavIaG~V--vgll~ailLIlf~iyR~rkkdEGSY~l~e~K~ 51 (64)
T PF01034_consen 12 AAVIAGGV--VGLLFAILLILFLIYRMRKKDEGSYDLDEPKP 51 (64)
T ss_dssp ---------------------------S------SS--S---
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCCccCCCCCc
Confidence 44445555 34444555557888988888888886555444
No 43
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=22.57 E-value=3.9e+02 Score=21.85 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=16.0
Q ss_pred cchhhhhhhchHHHHHHHHHHHH
Q psy4612 3 MYRQWLSSSQLNTILGGLLGSLF 25 (112)
Q Consensus 3 m~~~~l~sS~~~ti~GGflgS~l 25 (112)
+.++++...-+..++||.+|..+
T Consensus 225 I~~~fl~eg~~~g~~G~~~g~~l 247 (309)
T PRK11026 225 ILRPFLYGGALLGFSGALLSLIL 247 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777778888877654
No 44
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=22.45 E-value=3.3e+02 Score=21.89 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=21.9
Q ss_pred hhhhhHHHHHHHHHHHHhhcccceee
Q psy4612 70 VCATSCIMFSIIDLYYMNRISQKVHV 95 (112)
Q Consensus 70 VC~TTc~lFSl~~lYyinkiS~~~y~ 95 (112)
+++-.|++++.+.+|++|..++|+..
T Consensus 53 v~~i~~~~~~~vtl~lv~G~n~kt~~ 78 (244)
T PF07907_consen 53 VTIIAAILITAVTLFLVNGFNKKTLA 78 (244)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 67778889999999999999888763
No 45
>CHL00190 psaM photosystem I subunit XII; Provisional
Probab=22.40 E-value=99 Score=18.08 Aligned_cols=19 Identities=11% Similarity=0.273 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHhhccc
Q psy4612 51 PEVILCMLGAVMAAGMVHR 69 (112)
Q Consensus 51 pEv~lcl~ia~~as~~VHR 69 (112)
.+|+++|++|++++-.--|
T Consensus 5 ~Qi~iAL~~Al~~~iLA~r 23 (30)
T CHL00190 5 SQIFIALFLALTTGILAIR 23 (30)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4788899999887755444
No 46
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=22.34 E-value=2e+02 Score=17.64 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHH
Q psy4612 16 ILGGLLGSLFFV 27 (112)
Q Consensus 16 i~GGflgS~lF~ 27 (112)
|.|+++|.|++=
T Consensus 5 iiGa~vGg~l~~ 16 (48)
T PF04226_consen 5 IIGAFVGGWLFG 16 (48)
T ss_pred hHHHHHHHHHHH
Confidence 567777777643
No 47
>CHL00080 psbM photosystem II protein M
Probab=22.11 E-value=99 Score=18.69 Aligned_cols=15 Identities=13% Similarity=0.487 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhh
Q psy4612 19 GLLGSLFFVFSLTGL 33 (112)
Q Consensus 19 GflgS~lF~~~LTav 33 (112)
||+.++||+..=|++
T Consensus 7 gfiAt~LFi~iPt~F 21 (34)
T CHL00080 7 AFIATALFILVPTAF 21 (34)
T ss_pred HHHHHHHHHHHHHHH
Confidence 799999999877764
No 48
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=21.96 E-value=2.3e+02 Score=23.64 Aligned_cols=11 Identities=9% Similarity=0.187 Sum_probs=5.6
Q ss_pred HHHHHhhccch
Q psy4612 60 AVMAAGMVHRV 70 (112)
Q Consensus 60 a~~as~~VHRV 70 (112)
+++.....+|-
T Consensus 300 vl~~~~~~~~~ 310 (344)
T PRK15432 300 VLVFDGRLRCA 310 (344)
T ss_pred hhhHHHHHHHh
Confidence 33445555555
No 49
>COG5547 Small integral membrane protein [Function unknown]
Probab=21.71 E-value=1.1e+02 Score=20.69 Aligned_cols=19 Identities=42% Similarity=0.637 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy4612 14 NTILGGLLGSLFFVFSLTG 32 (112)
Q Consensus 14 ~ti~GGflgS~lF~~~LTa 32 (112)
..|.||.+|-++=++++|+
T Consensus 9 ypIIgglvglliAili~t~ 27 (62)
T COG5547 9 YPIIGGLVGLLIAILILTF 27 (62)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 4689999999998888875
No 50
>PF07465 PsaM: Photosystem I protein M (PsaM); InterPro: IPR010010 Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction centre. PsaM forms part of the photosystem I complex and its binding is stabilised by PsaI []. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0030094 plasma membrane-derived photosystem I; PDB: 3PCQ_M 1JB0_M.
Probab=21.01 E-value=1.1e+02 Score=17.65 Aligned_cols=19 Identities=11% Similarity=0.328 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHhhccc
Q psy4612 51 PEVILCMLGAVMAAGMVHR 69 (112)
Q Consensus 51 pEv~lcl~ia~~as~~VHR 69 (112)
.+|+++|++|++++-.--|
T Consensus 4 ~Qi~iAL~~Al~~~iLA~r 22 (29)
T PF07465_consen 4 SQIFIALVIALITGILALR 22 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3688888888887654433
No 51
>PF13813 MBOAT_2: Membrane bound O-acyl transferase family
Probab=20.88 E-value=71 Score=20.91 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhccchh
Q psy4612 52 EVILCMLGAVMAAGMVHRVC 71 (112)
Q Consensus 52 Ev~lcl~ia~~as~~VHRVC 71 (112)
+=.+.+++|+.+||.+|-..
T Consensus 47 ~r~~~l~~aF~~SGl~H~~~ 66 (83)
T PF13813_consen 47 SRYLQLFGAFLISGLMHEAG 66 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66778899999999999764
No 52
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=20.54 E-value=2.2e+02 Score=25.53 Aligned_cols=39 Identities=21% Similarity=0.446 Sum_probs=34.6
Q ss_pred chhhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHH
Q psy4612 48 KLFPEVILCMLGAVMAAGMVHRVCATSCIMFSIIDLYYM 86 (112)
Q Consensus 48 k~fpEv~lcl~ia~~as~~VHRVC~TTc~lFSl~~lYyi 86 (112)
+|...++++++.+++.-|-+||+.--+..+=...++.|+
T Consensus 183 ~~~~gi~la~l~~~VI~GGi~rIa~v~~~vVPfMA~~Yi 221 (452)
T COG1115 183 PLVTGIVLALLVALVIFGGIKRIAKVSSKVVPFMAILYV 221 (452)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999988888777775
No 53
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=20.31 E-value=1.2e+02 Score=17.89 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhh
Q psy4612 18 GGLLGSLFFVFSLTGL 33 (112)
Q Consensus 18 GGflgS~lF~~~LTav 33 (112)
.||+.+.||++.=|++
T Consensus 6 l~fiAtaLfi~iPt~F 21 (31)
T PF05151_consen 6 LAFIATALFILIPTAF 21 (31)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 5899999999887764
No 54
>PRK14127 cell division protein GpsB; Provisional
Probab=20.28 E-value=49 Score=24.07 Aligned_cols=16 Identities=44% Similarity=0.717 Sum_probs=13.3
Q ss_pred HHHhhhhhhhhhhccc
Q psy4612 29 SLTGLGNLESTIFGKN 44 (112)
Q Consensus 29 ~LTavgN~e~~~fG~~ 44 (112)
+|-=++|||..+||+.
T Consensus 90 iLKRls~LEk~VFg~~ 105 (109)
T PRK14127 90 ILKRLSNLEKHVFGSQ 105 (109)
T ss_pred HHHHHHHHHHHHhccc
Confidence 4667899999999974
Done!