Query psy4612
Match_columns 112
No_of_seqs 59 out of 61
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 21:22:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ls2_A High affinity copper up 44.5 6.7 0.00023 21.2 0.0 17 17-33 4-20 (26)
2 3qe7_A Uracil permease; uracil 25.4 1.1E+02 0.0037 25.0 5.2 43 13-62 87-132 (429)
3 1jb0_M Photosystem 1 reaction 24.1 57 0.0019 18.4 2.3 19 51-69 6-24 (31)
4 3arc_M Photosystem II reaction 22.5 64 0.0022 18.8 2.4 16 18-33 6-21 (36)
5 2l2t_A Receptor tyrosine-prote 18.4 1.2E+02 0.0039 18.1 3.0 22 10-31 6-27 (44)
6 2jwa_A Receptor tyrosine-prote 16.9 1.5E+02 0.0051 17.7 3.2 20 10-29 8-27 (44)
7 1m5n_Q PTHRP, PTH-RP, parathyr 16.4 66 0.0023 17.9 1.4 9 103-111 18-26 (28)
8 2knc_A Integrin alpha-IIB; tra 13.8 2E+02 0.0067 17.8 3.3 23 11-33 10-32 (54)
9 2knc_B Integrin beta-3; transm 12.2 1.9E+02 0.0065 18.6 3.0 19 12-30 9-27 (79)
10 2ks1_B Epidermal growth factor 12.0 84 0.0029 18.6 1.1 21 11-31 8-28 (44)
No 1
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=44.49 E-value=6.7 Score=21.20 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy4612 17 LGGLLGSLFFVFSLTGL 33 (112)
Q Consensus 17 ~GGflgS~lF~~~LTav 33 (112)
.|||++|.+-+|+|++.
T Consensus 4 ~~~~v~Sci~ifll~~~ 20 (26)
T 2ls2_A 4 AGEMAGAFVAVFLLAMF 20 (26)
Confidence 58999999999988764
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=25.37 E-value=1.1e+02 Score=24.96 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhh-hhh--hhhhhccccccchhhHHHHHHHHHHH
Q psy4612 13 LNTILGGLLGSLFFVFSLTGL-GNL--ESTIFGKNFQTKLFPEVILCMLGAVM 62 (112)
Q Consensus 13 ~~ti~GGflgS~lF~~~LTav-gN~--e~~~fG~~fq~k~fpEv~lcl~ia~~ 62 (112)
|..++|+.+.+-++.+++... +.+ +... |+||.++...++++|
T Consensus 87 ~~~~~gavi~aGli~ill~~~~~~~g~~~l~-------~~~PpvviG~~i~~I 132 (429)
T 3qe7_A 87 YEVALGGFIMCGVLFCLVSFIVKKAGTGWLD-------VLFPPAAMGAIVAVI 132 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSHHHH-------HHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHCCCeeeHHHHHHH
Confidence 566777777666666666553 333 3333 567777777666655
No 3
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=24.15 E-value=57 Score=18.36 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHhhccc
Q psy4612 51 PEVILCMLGAVMAAGMVHR 69 (112)
Q Consensus 51 pEv~lcl~ia~~as~~VHR 69 (112)
.+|+++|++|++++-.--|
T Consensus 6 ~Qi~iAL~~Al~~~iLA~r 24 (31)
T 1jb0_M 6 TQVYVALVIALLPAVLAFR 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4788999999887755444
No 4
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=22.50 E-value=64 Score=18.82 Aligned_cols=16 Identities=25% Similarity=0.440 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhh
Q psy4612 18 GGLLGSLFFVFSLTGL 33 (112)
Q Consensus 18 GGflgS~lF~~~LTav 33 (112)
.||+.++||++.=|++
T Consensus 6 l~fiAt~Lfi~iPt~F 21 (36)
T 3arc_M 6 LGLIATALFVLVPSVF 21 (36)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5899999999877664
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=18.43 E-value=1.2e+02 Score=18.11 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=17.1
Q ss_pred hhchHHHHHHHHHHHHHHHHHH
Q psy4612 10 SSQLNTILGGLLGSLFFVFSLT 31 (112)
Q Consensus 10 sS~~~ti~GGflgS~lF~~~LT 31 (112)
+|+...|.||-+|.++-++.+.
T Consensus 6 ~s~~~aIA~gVVgGv~~v~ii~ 27 (44)
T 2l2t_A 6 HARTPLIAAGVIGGLFILVIVG 27 (44)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEeehHHHHHHHHHH
Confidence 6788889999999877765544
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=16.95 E-value=1.5e+02 Score=17.66 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=14.0
Q ss_pred hhchHHHHHHHHHHHHHHHH
Q psy4612 10 SSQLNTILGGLLGSLFFVFS 29 (112)
Q Consensus 10 sS~~~ti~GGflgS~lF~~~ 29 (112)
+|+...|.||-+|=++++..
T Consensus 8 ~~~~~~Ia~~vVGvll~vi~ 27 (44)
T 2jwa_A 8 ASPLTSIISAVVGILLVVVL 27 (44)
T ss_dssp CCSHHHHHHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHHHH
Confidence 57788899999994444333
No 7
>1m5n_Q PTHRP, PTH-RP, parathyroid hormone-related protein; all helical protein, heat repeats, protein transport; 2.90A {Homo sapiens}
Probab=16.43 E-value=66 Score=17.88 Aligned_cols=9 Identities=44% Similarity=0.582 Sum_probs=3.8
Q ss_pred ccCCCcCCC
Q psy4612 103 QPTGGKKKK 111 (112)
Q Consensus 103 ~~~~~~kk~ 111 (112)
...+|+||+
T Consensus 18 k~~~KkKk~ 26 (28)
T 1m5n_Q 18 KTPGKKKKG 26 (28)
T ss_dssp CSSCCCCCC
T ss_pred ccccccccC
Confidence 334444443
No 8
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=13.82 E-value=2e+02 Score=17.77 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=17.6
Q ss_pred hchHHHHHHHHHHHHHHHHHHhh
Q psy4612 11 SQLNTILGGLLGSLFFVFSLTGL 33 (112)
Q Consensus 11 S~~~ti~GGflgS~lF~~~LTav 33 (112)
..+..|+++.+|.++.+.+++++
T Consensus 10 vp~wiIi~svl~GLllL~li~~~ 32 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLA 32 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888877777664
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=12.19 E-value=1.9e+02 Score=18.62 Aligned_cols=19 Identities=11% Similarity=0.308 Sum_probs=12.3
Q ss_pred chHHHHHHHHHHHHHHHHH
Q psy4612 12 QLNTILGGLLGSLFFVFSL 30 (112)
Q Consensus 12 ~~~ti~GGflgS~lF~~~L 30 (112)
.+..|+||-+|+++.+-++
T Consensus 9 n~~~Iv~gvi~gilliGll 27 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLA 27 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHH
Confidence 4566777877776655444
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=11.96 E-value=84 Score=18.61 Aligned_cols=21 Identities=19% Similarity=0.621 Sum_probs=14.8
Q ss_pred hchHHHHHHHHHHHHHHHHHH
Q psy4612 11 SQLNTILGGLLGSLFFVFSLT 31 (112)
Q Consensus 11 S~~~ti~GGflgS~lF~~~LT 31 (112)
|....|.+|-+|.++.+..+.
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~ 28 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVA 28 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHH
T ss_pred CCcceEEeehhHHHHHHHHHH
Confidence 666678888888777765544
Done!