Query psy4612
Match_columns 112
No_of_seqs 59 out of 61
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 21:22:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4612.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4612hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtm1 f.23.35.1 (M:1-36) Pho 25.2 25 0.0018 19.2 2.4 14 19-32 7-20 (36)
2 d3d31c1 f.58.1.1 (C:13-260) Su 16.4 1.4E+02 0.0099 19.4 7.4 19 71-89 59-77 (248)
3 d1rk8b_ d.232.1.1 (B:) Mago na 9.2 58 0.0043 22.3 1.4 11 74-84 128-138 (141)
4 d2jmfa1 b.72.1.1 (A:521-553) U 8.5 17 0.0012 19.0 -1.4 12 83-94 17-28 (33)
5 d1xrda1 f.3.1.1 (A:1-52) Light 7.5 1.2E+02 0.0084 17.5 2.1 23 53-75 13-36 (52)
6 d1i5hw_ b.72.1.1 (W:) Ubiquiti 6.6 40 0.0029 18.9 -0.4 12 83-94 26-37 (50)
7 d1eg3a3 b.72.1.1 (A:47-84) Dys 6.1 29 0.0021 19.2 -1.2 11 83-93 25-35 (38)
8 d2r6gf2 f.58.1.1 (F:261-504) M 5.9 3.6E+02 0.027 17.3 5.5 13 34-46 2-14 (244)
9 d2gvha1 d.38.1.1 (A:9-143) Pro 5.4 1.1E+02 0.0083 19.0 1.3 18 12-29 22-39 (135)
10 d1tx9a1 a.84.1.1 (A:7-144) Sca 5.3 1.8E+02 0.013 19.3 2.3 21 57-77 70-90 (138)
No 1
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=25.18 E-value=25 Score=19.23 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHh
Q psy4612 19 GLLGSLFFVFSLTG 32 (112)
Q Consensus 19 GflgS~lF~~~LTa 32 (112)
||+.+.||++.=|.
T Consensus 7 g~iAt~LFilvPt~ 20 (36)
T d2axtm1 7 GLIATALFVLVPSV 20 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 79999999876554
No 2
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=16.37 E-value=1.4e+02 Score=19.36 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=14.7
Q ss_pred hhhhHHHHHHHHHHHHhhc
Q psy4612 71 CATSCIMFSIIDLYYMNRI 89 (112)
Q Consensus 71 C~TTc~lFSl~~lYyinki 89 (112)
+.-.|+++++..-|+++|.
T Consensus 59 s~~i~~~lg~~~a~~~~~~ 77 (248)
T d3d31c1 59 ATLLALLLGAPTGYILARF 77 (248)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3446788999999999874
No 3
>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=9.17 E-value=58 Score=22.27 Aligned_cols=11 Identities=45% Similarity=1.026 Sum_probs=7.9
Q ss_pred hHHHHHHHHHH
Q psy4612 74 SCIMFSIIDLY 84 (112)
Q Consensus 74 Tc~lFSl~~lY 84 (112)
-|++||++.|-
T Consensus 128 kclvfsLi~lH 138 (141)
T d1rk8b_ 128 KCLVFSLIGLH 138 (141)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 47888887763
No 4
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=8.52 E-value=17 Score=18.99 Aligned_cols=12 Identities=0% Similarity=0.418 Sum_probs=8.8
Q ss_pred HHHHhhccccee
Q psy4612 83 LYYMNRISQKVH 94 (112)
Q Consensus 83 lYyinkiS~~~y 94 (112)
.||+|.+.+.+.
T Consensus 17 ~Yyinh~t~~T~ 28 (33)
T d2jmfa1 17 RFFVDHNTRRTT 28 (33)
T ss_dssp EEEEETTTCCEE
T ss_pred EEEEECCCCcEe
Confidence 488888877653
No 5
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=7.53 E-value=1.2e+02 Score=17.48 Aligned_cols=23 Identities=9% Similarity=0.150 Sum_probs=12.5
Q ss_pred HHHHHHHHHH-HHhhccchhhhhH
Q psy4612 53 VILCMLGAVM-AAGMVHRVCATSC 75 (112)
Q Consensus 53 v~lcl~ia~~-as~~VHRVC~TTc 75 (112)
+++++.+-++ .|-+||=++..|-
T Consensus 13 ~lva~~~fL~~LAl~IHfiLLSt~ 36 (52)
T d1xrda1 13 ALVGLATFLFVLALLIHFILLSTE 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 3444444443 5667777766553
No 6
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.58 E-value=40 Score=18.85 Aligned_cols=12 Identities=17% Similarity=0.562 Sum_probs=9.8
Q ss_pred HHHHhhccccee
Q psy4612 83 LYYMNRISQKVH 94 (112)
Q Consensus 83 lYyinkiS~~~y 94 (112)
.||+|+..+.+-
T Consensus 26 ~YY~nh~t~~T~ 37 (50)
T d1i5hw_ 26 VFFINHNIKKTQ 37 (50)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCCEe
Confidence 589998888776
No 7
>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.10 E-value=29 Score=19.16 Aligned_cols=11 Identities=36% Similarity=0.661 Sum_probs=7.0
Q ss_pred HHHHhhcccce
Q psy4612 83 LYYMNRISQKV 93 (112)
Q Consensus 83 lYyinkiS~~~ 93 (112)
-||||.-++++
T Consensus 25 PYYINH~~e~T 35 (38)
T d1eg3a3 25 PYYINHETQTT 35 (38)
T ss_dssp EEEEETTTTEE
T ss_pred CeEeecccccc
Confidence 37777766654
No 8
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.91 E-value=3.6e+02 Score=17.34 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=6.2
Q ss_pred hhhhhhhhccccc
Q psy4612 34 GNLESTIFGKNFQ 46 (112)
Q Consensus 34 gN~e~~~fG~~fq 46 (112)
.|+++..-.++++
T Consensus 2 ~NY~~~f~d~~~~ 14 (244)
T d2r6gf2 2 KNFTRVFTDEGIQ 14 (244)
T ss_dssp TTTSGGGTCTTTS
T ss_pred ccHHHHHcCccHH
Confidence 3555544444443
No 9
>d2gvha1 d.38.1.1 (A:9-143) Probable acyl-CoA hydrolase AGR_L_2016 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=5.39 E-value=1.1e+02 Score=18.98 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=13.0
Q ss_pred chHHHHHHHHHHHHHHHH
Q psy4612 12 QLNTILGGLLGSLFFVFS 29 (112)
Q Consensus 12 ~~~ti~GGflgS~lF~~~ 29 (112)
..++++||.+-+|+--..
T Consensus 22 ~~G~l~GG~ll~~~D~~a 39 (135)
T d2gvha1 22 HHGTLFGGTGLALMDRVA 39 (135)
T ss_dssp HHHHHTTHHHHHHHHHHH
T ss_pred cCCcChHHHHHHHHHHHH
Confidence 346889999888876543
No 10
>d1tx9a1 a.84.1.1 (A:7-144) Scaffolding protein gpD of bacteriophage procapsid {Bacteriophage phi-X174 [TaxId: 10847]}
Probab=5.26 E-value=1.8e+02 Score=19.28 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHhhccchhhhhHHH
Q psy4612 57 MLGAVMAAGMVHRVCATSCIM 77 (112)
Q Consensus 57 l~ia~~as~~VHRVC~TTc~l 77 (112)
.+||..++.-||.|-+-|.-|
T Consensus 70 efiaaviayyvhpvn~qtacl 90 (138)
T d1tx9a1 70 EFIAAVIAYYVHPVNIQTACL 90 (138)
T ss_dssp HHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHhccchhhhhhhe
Done!