RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4612
(112 letters)
>gnl|CDD|118307 pfam09775, Keratin_assoc, Keratinocyte-associated protein 2.
Members of this family comprise various
keratinocyte-associated proteins. Their exact function
has not, as yet, been determined.
Length = 131
Score = 145 bits (367), Expect = 2e-46
Identities = 64/109 (58%), Positives = 84/109 (77%)
Query: 1 MQMYRQWLSSSQLNTILGGLLGSLFFVFSLTGLGNLESTIFGKNFQTKLFPEVILCMLGA 60
MQMYR L+SS+L TI GG LGSL F+FSLT +GNLE +FGK FQTKLFPEV+LC++ A
Sbjct: 23 MQMYRGQLASSELMTIFGGFLGSLLFIFSLTAIGNLEEVLFGKGFQTKLFPEVVLCLIIA 82
Query: 61 VMAAGMVHRVCATSCIMFSIIDLYYMNRISQKVHVQPIIQASQPTGGKK 109
++AAGMVHRVC T+C++FS++ LYY+N+ISQKV+ + K+
Sbjct: 83 LIAAGMVHRVCITTCLIFSVVALYYVNKISQKVYQSGAPLPKPASKKKR 131
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 29.5 bits (67), Expect = 0.33
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 6 QWLSSSQLN--TILGGLLGSLFFVFSLTGLGNLESTIFGKNFQTKLFPEVILCM--LGAV 61
+LSS+ L L L +++ F L G G+L T+F F L PE + LG+
Sbjct: 223 AFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDL--TLFAGLFVLILAPEFFQPLRDLGSF 280
Query: 62 MAAGM 66
A
Sbjct: 281 FHAAA 285
>gnl|CDD|179420 PRK02399, PRK02399, hypothetical protein; Provisional.
Length = 406
Score = 29.1 bits (66), Expect = 0.44
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 15/59 (25%)
Query: 62 MAAGMVHRVCATSCI--MFSIIDLYYMNRISQKV-------------HVQPIIQASQPT 105
MA+G V S I M+S+ D+ +NRIS++V QP +P
Sbjct: 130 MASGDVSPYVGASDIAMMYSVTDIAGLNRISRQVLSNAAGAIAGMVKFEQPAPSDDKPL 188
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 27.7 bits (62), Expect = 1.2
Identities = 7/19 (36%), Positives = 15/19 (78%)
Query: 81 IDLYYMNRISQKVHVQPII 99
+D+ M R+S++V++ P+I
Sbjct: 151 LDIEAMKRLSKRVNLIPVI 169
>gnl|CDD|217799 pfam03929, PepSY_TM, PepSY-associated TM helix. This alignment
represents a conserved TM helix found in family of
bacterial proteins. The previous DUF337 alignment
covered the whole (or most) of the protein. Analysis
with dotter (E Sonnhammer) indicated that the same
region was represented multiple times within the old
alignment.
Length = 27
Score = 24.6 bits (55), Expect = 2.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 12 QLNTILGGLLGSLFFVFSLTGL 33
L+ LG L L + +LTGL
Sbjct: 3 DLHRWLGLLAALLLLLLALTGL 24
>gnl|CDD|219178 pfam06792, UPF0261, Uncharacterized protein family (UPF0261).
Length = 403
Score = 26.3 bits (59), Expect = 3.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 62 MAAGMVHRVCATSCI--MFSIIDLYYMNRISQKV 93
+A+G V S I M S++D+ +NRIS+ V
Sbjct: 128 VASGDVSPYVGASDITMMPSVVDVAGLNRISRAV 161
>gnl|CDD|201420 pfam00735, Septin, Septin. Members of this family include CDC3,
CDC10, CDC11 and CDC12/Septin. Members of this family
bind GTP. As regards the septins, these are polypeptides
of 30-65kDa with three characteristic GTPase motifs
(G-1, G-3 and G-4) that are similar to those of the Ras
family. The G-4 motif is strictly conserved with a
unique septin consensus of AKAD. Most septins are
thought to have at least one coiled-coil region, which
in some cases is necessary for intermolecular
interactions that allow septins to polymerise to form
rod-shaped complexes. In turn, these are arranged into
tandem arrays to form filaments. They are
multifunctional proteins, with roles in cytokinesis,
sporulation, germ cell development, exocytosis and
apoptosis.
Length = 280
Score = 26.1 bits (58), Expect = 3.9
Identities = 6/19 (31%), Positives = 15/19 (78%)
Query: 81 IDLYYMNRISQKVHVQPII 99
+D+ +M ++ +KV++ P+I
Sbjct: 130 LDVEFMKKLHEKVNIIPVI 148
>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family. Septins are a
conserved family of GTP-binding proteins associated with
diverse processes in dividing and non-dividing cells.
They were first discovered in the budding yeast S.
cerevisiae as a set of genes (CDC3, CDC10, CDC11 and
CDC12) required for normal bud morphology. Septins are
also present in metazoan cells, where they are required
for cytokinesis in some systems, and implicated in a
variety of other processes involving organization of the
cell cortex and exocytosis. In humans, 12 septin genes
generate dozens of polypeptides, many of which comprise
heterooligomeric complexes. Since septin mutants are
commonly defective in cytokinesis and formation of the
neck formation of the neck filaments/septin rings,
septins have been considered to be the primary
constituents of the neck filaments. Septins belong to
the GTPase superfamily for their conserved GTPase motifs
and enzymatic activities.
Length = 275
Score = 26.0 bits (58), Expect = 4.2
Identities = 7/19 (36%), Positives = 16/19 (84%)
Query: 81 IDLYYMNRISQKVHVQPII 99
+D+ +M ++S+KV++ P+I
Sbjct: 131 LDIEFMKKLSKKVNIIPVI 149
>gnl|CDD|223650 COG0577, SalY, ABC-type antimicrobial peptide transport system,
permease component [Defense mechanisms].
Length = 419
Score = 26.2 bits (57), Expect = 4.2
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 2 QMYRQWLSSSQLNTILGGLLGSLFFVFSLTGLGNL--ESTIFGKNFQTKLFPEVILCMLG 59
++ Q+L + + ++GGLLG L + L L S F L P +IL L
Sbjct: 331 EILLQFLLEALILGLIGGLLGILLGLGLSLLLALLLIASLFFLLALPILLSPLLILLALI 390
Query: 60 AVMAAGMV 67
+ G++
Sbjct: 391 VALLVGVI 398
>gnl|CDD|180755 PRK06926, PRK06926, flagellar motor protein MotP; Reviewed.
Length = 271
Score = 25.4 bits (56), Expect = 7.7
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 16 ILGGLLGSLFFVFSLTGLGNLESTIFGKNFQTK 48
+ GGL +LF FS L + + FQ++
Sbjct: 44 VTGGLCAALFISFSPKDLKLAPR-VLKQAFQSQ 75
>gnl|CDD|215724 pfam00110, wnt, wnt family. Wnt genes have been identified in
vertebrates and invertebrates but not in plants,
unicellular eukaryotes or prokaryotes. In humans, 19
WNT proteins are known. Because of their insolubility
little is known about Wnt protein structure, but all
have 23 or 24 Cys residues whose spacing is highly
conserved. Signal transduction by Wnt proteins
(including the Wnt/beta-catenin, the Wnt/Ca++, and the
Wnt/polarity pathway) is mediated by receptors of the
Frizzled and LDL-receptor-related protein (LRP)
families.
Length = 308
Score = 25.3 bits (56), Expect = 9.7
Identities = 7/16 (43%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 60 AVMAAGMVHRVCATSC 75
A+ +AG+VH V +C
Sbjct: 73 AISSAGVVHAV-TRAC 87
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.138 0.412
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,499,545
Number of extensions: 455515
Number of successful extensions: 790
Number of sequences better than 10.0: 1
Number of HSP's gapped: 786
Number of HSP's successfully gapped: 65
Length of query: 112
Length of database: 10,937,602
Length adjustment: 76
Effective length of query: 36
Effective length of database: 7,566,698
Effective search space: 272401128
Effective search space used: 272401128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.0 bits)