RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4612
         (112 letters)



>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
           homodimer, ligase; HET: FYA; 2.50A {Thermus
           thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A
           1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A*
           2amc_A*
          Length = 350

 Score = 26.4 bits (59), Expect = 2.4
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 15/45 (33%)

Query: 39  TIFGKNFQTKL----FP------EV-ILCMLGA----VMAAGMVH 68
            +FG + + +     FP      +  +    G     +  AGMVH
Sbjct: 243 ALFGPDSKVRFQPVYFPFVEPGAQFAVWWPEGGKWLELGGAGMVH 287


>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR,
           AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans}
          Length = 348

 Score = 26.0 bits (58), Expect = 2.8
 Identities = 6/18 (33%), Positives = 8/18 (44%), Gaps = 3/18 (16%)

Query: 81  IDLYYMNRISQKVHVQPI 98
           IDL  ++    K    PI
Sbjct: 140 IDLEQIHWPDDKT---PI 154


>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation,
           tRNA-binding, DNA-binding domain, four-helix
           aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
           3.02A {Escherichia coli}
          Length = 327

 Score = 25.6 bits (57), Expect = 4.2
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 14/43 (32%)

Query: 40  IFGKNFQTKL----FP------EV-ILCMLGA---VMAAGMVH 68
            F ++ Q +     FP      EV ++   G    V+  GMVH
Sbjct: 234 FFEEDLQIRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVH 276


>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel,
           oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1
           PDB: 1pz0_A*
          Length = 312

 Score = 25.2 bits (56), Expect = 6.4
 Identities = 5/18 (27%), Positives = 9/18 (50%), Gaps = 3/18 (16%)

Query: 81  IDLYYMNRISQKVHVQPI 98
           IDL+Y++   +     P 
Sbjct: 119 IDLFYIHFPDEHT---PK 133


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,585,068
Number of extensions: 77915
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 12
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.4 bits)