BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4613
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 2 PVIHVPNQLVGAP--IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
P + +V A + VTL C + +P+ W +D G+ + + E E + IF
Sbjct: 195 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD-GEPIENEE----EDDEKHIF 249
Query: 60 -DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
D LTI+ + K D Y CIA+N GE ++SI L
Sbjct: 250 SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
D+ EC V P W+++ GD+VI S+ +++ S L I + K D G
Sbjct: 329 DIEFECAVSGKPVPTVNWMKN-GDVVIPSDYFQIVGGSN--------LRILGVVKSDEGF 379
Query: 78 YKCIAKNSLGEVESSIRL 95
Y+C+A+N G +SS +L
Sbjct: 380 YQCVAENEAGNAQSSAQL 397
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
D LEC V YP W+R + + + S++Y + S L I +T D G+
Sbjct: 238 DAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS--------NLLISNVTDDDSGT 289
Query: 78 YKCI 81
Y C+
Sbjct: 290 YTCV 293
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
V L+C V P +W ++Q D+ + SR + L I ++ D G Y
Sbjct: 139 VLLKCEVIGDPMPTIHWQKNQQDL------NPIPGDSRVVVLPSGALQISRLQPGDSGVY 192
Query: 79 KCIAKN 84
+C A+N
Sbjct: 193 RCSARN 198
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFK-MRLTIKKIT 71
A + VTL C + +P+ W +D G+ + + E S F++ L IKK+
Sbjct: 25 ANLSQSVTLACDADGFPEPTMTWTKD-GEPIEQEDNEEKYS-----FNYDGSELIIKKVD 78
Query: 72 KYDLGSYKCIAKNSLGEVESSIRL 95
K D Y CIA+N GE +++I L
Sbjct: 79 KSDEAEYICIAENKAGEQDATIHL 102
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
PVI P + V A ++ T C VE+YP+ W R++ + + RY SI +
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRY-------SIREN 60
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLG 87
LTI + D G Y C A N +G
Sbjct: 61 GQLLTILSVEDSDDGIYCCTANNGVG 86
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 21 LECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80
L C PK W++ + +S +ES S L I + K D G Y+C
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGS---------LRIHNVQKEDAGQYRC 170
Query: 81 IAKNSLGEVESSI 93
+AKNSLG S +
Sbjct: 171 VAKNSLGTAYSKL 183
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 20/96 (20%)
Query: 7 PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMR-- 64
P + V A I +TL+C V+ P+ W ++ + RS +KM+
Sbjct: 11 PLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKL-------------RSAPAYKMQFK 57
Query: 65 -----LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I K+ D+G Y C A+NS+G V SS L
Sbjct: 58 NNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVL 93
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
HPV L GA DV LEC ++ P W +D+ ++ S ++Y++ S +
Sbjct: 392 HPV----ETLKGA----DVHLECELQGTPPFQVSWHKDKRELR-SGKKYKIMS-----EN 437
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLG 87
F + I + D+G Y+C A N +G
Sbjct: 438 FLTSIHILNVDSADIGEYQCKASNDVG 464
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 20 TLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79
T +C+V W +D + + Y++ ++ + LT+ K+TK D G Y
Sbjct: 216 TFKCHVTGTAPIKITWAKDNRE-IRPGGNYKM-----TLVENTATLTVLKVTKGDAGQYT 269
Query: 80 CIAKNSLGEVESSIRL 95
C A N G+ S +L
Sbjct: 270 CYASNVAGKDSCSAQL 285
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 15 IDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKY 73
+ +V L+ +E A P S+ W +D+G++V S+ + S S +I L +
Sbjct: 491 VGEEVQLQATIEGAEPISV-AWFKDKGEIVRESDNIWI-SYSENI----ATLQFSRAEPA 544
Query: 74 DLGSYKCIAKNSLGEVE 90
+ G Y C KN G E
Sbjct: 545 NAGKYTCQIKNEAGTQE 561
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 65 LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I + + +G Y C A N LG SS +L
Sbjct: 159 LQILQTDQSHVGQYNCSASNPLGTASSSAKL 189
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P P Q V + T E ++ +P W RD VIS+ IS S D
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRD--GQVISTSTLPGVQISFS--DG 61
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ +LTI +TK + G Y A N G+ S+ L
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAEL 95
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P P Q V + T E ++ +P W RD VIS+ IS S D
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRD--GQVISTSTLPGVQISFS--DG 61
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ +LTI +TK + G Y A N G+ S+ L
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAEL 95
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
D+ LEC P W + GD+ ++E +F L I +++ D G
Sbjct: 239 DLLLECIASGVPTPDIAWYKKGGDLPSDKAKFE---------NFNKALRITNVSEEDSGE 289
Query: 78 YKCIAKNSLGEVESSIRL 95
Y C+A N +G + +I +
Sbjct: 290 YFCLASNKMGSIRHTISV 307
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 21 LECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80
L C + P W R G +I S +Y++ S R+ LT+ + D G Y C
Sbjct: 27 LSCQIVGRPLPDIKWYRF-GKELIQSRKYKMSSDGRT-----HTLTVMTEEQEDEGVYTC 80
Query: 81 IAKNSLGEVESSIRL 95
IA N +GEVE+S +L
Sbjct: 81 IATNEVGEVETSSKL 95
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSER--YEVESISRSIFD 60
+I P LV + TL C VE P+ W +D G+ V ++E+ + V+ ++F
Sbjct: 12 IIEHPTDLV-VKKNEPATLNCKVEGKPEPTIEWFKD-GEPVSTNEKKSHRVQFKDGALFF 69
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91
++ T++ + D G Y C+AKN +G+ S
Sbjct: 70 YR---TMQGKKEQDGGEYWCVAKNRVGQAVS 97
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 14 PIDTDVT------LECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLT 66
P DT V LEC + P+ W++D G + + + SR L
Sbjct: 115 PKDTRVAKGETALLECGPPKGIPEPTLIWIKD-GVPLDDLKAMSFGASSRVRIVDGGNLL 173
Query: 67 IKKITKYDLGSYKCIAKNSLGEVESS 92
I + D G+YKCIA+N +G ESS
Sbjct: 174 ISNVEPIDEGNYKCIAQNLVGTRESS 199
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSER--YEVESISRSIFD 60
+I P LV + TL C VE P+ W +D G+ V ++E+ + V+ ++F
Sbjct: 12 IIEHPTDLV-VKKNEPATLNCKVEGKPEPTIEWFKD-GEPVSTNEKKSHRVQFKDGALFF 69
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91
++ T++ + D G Y C+AKN +G+ S
Sbjct: 70 YR---TMQGKKEQDGGEYWCVAKNRVGQAVS 97
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 14 PIDTDVT------LECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLT 66
P DT V LEC + P+ W++D G + + + SR L
Sbjct: 115 PKDTRVAKGETALLECGPPKGIPEPTLIWIKD-GVPLDDLKAMSFGASSRVRIVDGGNLL 173
Query: 67 IKKITKYDLGSYKCIAKNSLGEVESS 92
I + D G+YKCIA+N +G ESS
Sbjct: 174 ISNVEPIDEGNYKCIAQNLVGTRESS 199
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 15 IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYD 74
++ V EC PK W+++ GD +++ +R ++E + L I + D
Sbjct: 309 MEESVFWECKANGRPKPTYRWLKN-GDPLLTRDRIQIEQGT---------LNITIVNLSD 358
Query: 75 LGSYKCIAKNSLGEVESSIRL 95
G Y+C+A+N G + SS L
Sbjct: 359 AGMYQCVAENKHGVIFSSAEL 379
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTI 67
+ V A T V LEC+ P W R G + + R++ I L I
Sbjct: 213 ETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI----------LEI 262
Query: 68 KKITKYDLGSYKCIAKNSLGE 88
+ D GSY+C+A+NS G+
Sbjct: 263 PNFQQEDAGSYECVAENSRGK 283
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 14 PIDTD---VTLECYVEAYPKSINYWVRDQGDMVISSE-RYEVESISRSIFDFKMRLTIKK 69
P+D++ V L C V+ PK W + D+ I + RY S+ D + +
Sbjct: 18 PLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRY-------SVVDGSLLINNPN 70
Query: 70 ITKYDLGSYKCIAKNSLGEVES 91
T+ D G+Y+CIA NS G + S
Sbjct: 71 KTQ-DAGTYQCIATNSFGTIVS 91
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 65 LTIKKITKYDLGSYKCIAKNSL 86
L I K+ K D+G+Y C+ N++
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTV 180
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 15 IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYD 74
++ V EC PK W+++ GD +++ +R ++E + L I + D
Sbjct: 308 MEESVFWECKANGRPKPTYRWLKN-GDPLLTRDRIQIEQGT---------LNITIVNLSD 357
Query: 75 LGSYKCIAKNSLGEVESSIRL 95
G Y+C+A+N G + SS L
Sbjct: 358 AGMYQCVAENKHGVIFSSAEL 378
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTI 67
+ V A T V LEC+ P W R G + + R++ I L I
Sbjct: 212 ETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI----------LEI 261
Query: 68 KKITKYDLGSYKCIAKNSLGE 88
+ D GSY+C+A+NS G+
Sbjct: 262 PNFQQEDAGSYECVAENSRGK 282
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 14 PIDTD---VTLECYVEAYPKSINYWVRDQGDMVISSE-RYEVESISRSIFDFKMRLTIKK 69
P+D++ V L C V+ PK W + D+ I + RY S+ D + +
Sbjct: 17 PLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRY-------SVVDGSLLINNPN 69
Query: 70 ITKYDLGSYKCIAKNSLGEVES 91
T+ D G+Y+CIA NS G + S
Sbjct: 70 KTQ-DAGTYQCIATNSFGTIVS 90
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 65 LTIKKITKYDLGSYKCIAKNSL 86
L I K+ K D+G+Y C+ N++
Sbjct: 158 LYIAKVEKSDVGNYTCVVTNTV 179
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
V L+C P W D G + +++RY+V D L I + D G Y
Sbjct: 447 VFLKCVAGGNPTPEISWELD-GKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLY 505
Query: 79 KCIAKNSLGEVESSIRL 95
KCIAK+ +G E S +L
Sbjct: 506 KCIAKSKVGVAEHSAKL 522
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 4 IHVPNQLVGAPID------TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRS 57
++VP + + P D +D +EC + +PK W + GD + Y+ S +
Sbjct: 711 VYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGD---TPGEYKDLKKSDN 767
Query: 58 IFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSI 93
I + L + I K + G Y C A N +G S++
Sbjct: 768 IRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAV 803
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
+ + L C + YP + W + + + R + ++ + L IK D G
Sbjct: 264 STMALLCPAQGYPVPVFRWYK----FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 319
Query: 77 SYKCIAKNSLG 87
Y C+ NS+G
Sbjct: 320 KYLCVVNNSVG 330
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 2 PVIHVPNQLVGAPID--TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
P I +P + A + ++T C P+ W R+ G ++ +E+Y ++ +
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN-GKLIEENEKYILKGSN---- 57
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
LT++ I D G Y C A N GE E L
Sbjct: 58 ---TELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 90
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
A I +D+ C P+ W+RD G + S R EV L K+
Sbjct: 306 ADIGSDLRWSCVASGKPRPAVRWLRD-GQPLASQNRIEVSG---------GELRFSKLVL 355
Query: 73 YDLGSYKCIAKNSLGEVESSIRL 95
D G Y+C+A+N G V +S L
Sbjct: 356 EDSGMYQCVAENKHGTVYASAEL 378
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSE-RYEVESISRSIFDFKMRLTIKKITKYDLGS 77
VTL C A P + W + ++ + + RY + + I + + D GS
Sbjct: 25 VTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISN--------PVKAKDAGS 76
Query: 78 YKCIAKNSLGEV---ESSIRL 95
Y+C+A N+ G V E+S+R
Sbjct: 77 YQCVATNARGTVVSREASLRF 97
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 2 PVIHVPNQLVGAPID--TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
P I +P + A + ++T C P+ W R+ G ++ +E+Y ++ +
Sbjct: 97 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN-GKLIEENEKYILKGSN---- 151
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90
LT++ I D G Y C A N GE E
Sbjct: 152 ---TELTVRNIINSDGGPYVCRATNKAGEDE 179
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 2 PVIHVPNQLVGAPID--TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
P I +P + A + ++T C P+ W R+ G ++ +E+Y ++ +
Sbjct: 193 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN-GKLIEENEKYILKGSN---- 247
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90
LT++ I D G Y C A N GE E
Sbjct: 248 ---TELTVRNIINSDGGPYVCRATNKAGEDE 275
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 23 CYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA 82
C P+SI+ W QG+ +IS++R V+ + RLTI D G Y+C A
Sbjct: 26 CTAIGEPESID-WYNPQGEKIISTQRVVVQKEG-----VRSRLTIYNANIEDAGIYRCQA 79
Query: 83 KNSLGEVESS 92
++ G+ + +
Sbjct: 80 TDAKGQTQEA 89
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
V + C P YW+++Q + +S+ RY ++ F L I+ + D G Y
Sbjct: 130 VLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD------GF---LQIENSREEDQGKY 180
Query: 79 KCIAKNSLG-EVESSIRLY 96
+C+A+NS+G E + LY
Sbjct: 181 ECVAENSMGTEHSKATNLY 199
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
V + C P YW+++Q + +S+ RY ++ F L I+ + D G Y
Sbjct: 128 VLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD------GF---LQIENSREEDQGKY 178
Query: 79 KCIAKNSLG-EVESSIRLY 96
+C+A+NS+G E + LY
Sbjct: 179 ECVAENSMGTEHSKATNLY 197
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
PVI Q D+ P+ W +D G + +Y++ F
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKD-GKAITQGGKYKLSEDKGGFF-- 63
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I K D G Y C KNS G V SS +L
Sbjct: 64 ---LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
VT C V PK YW +D + S+ Y +I R + D L T D G+Y
Sbjct: 25 VTFTCRVAGNPKPKIYWFKDGKQISPKSDHY---TIQRDL-DGTCSLHTTASTLDDDGNY 80
Query: 79 KCIAKNSLGEVESSIRL 95
+A N G V + RL
Sbjct: 81 TIMAANPQGRVSCTGRL 97
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 21 LECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80
+C VE YP W +D + V S ++++ LTI ++ D Y C
Sbjct: 61 FDCKVEGYPDPEVMWFKDD-NPVKESRHFQIDYDEEG----NCSLTISEVCGDDDAKYTC 115
Query: 81 IAKNSLGEVESSIRL 95
A NSLGE + L
Sbjct: 116 KAVNSLGEATCTAEL 130
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
VT C V PK YW +D + S+ Y +I R + D L T D G+Y
Sbjct: 26 VTFTCRVAGNPKPKIYWFKDGKQISPKSDHY---TIQRDL-DGTCSLHTTASTLDDDGNY 81
Query: 79 KCIAKNSLGEVESSIRL 95
+A N G + + RL
Sbjct: 82 TIMAANPQGRISCTGRL 98
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 21 LECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80
+C VE YP W +D + V S ++++ LTI ++ D Y C
Sbjct: 61 FDCKVEGYPDPEVMWFKDD-NPVKESRHFQIDYDEEG----NCSLTISEVCGDDDAKYTC 115
Query: 81 IAKNSLGEVESSIRL 95
A NSLGE + L
Sbjct: 116 KAVNSLGEATCTAEL 130
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGD---MVISSERYEVESISRSIF 59
+H V P + V L C + W DQGD +V + + R F
Sbjct: 6 TVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF 65
Query: 60 DFKMRLTIKKITKYDLGSYKCI----AKNSLGEVE 90
+T K +T+ D G+Y C+ NS GEV+
Sbjct: 66 -LPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVK 99
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
HPV L GA DV LEC ++ P W +D+ ++ S ++Y++ S +
Sbjct: 200 HPV----ETLKGA----DVHLECELQGTPPFQVSWHKDKRELR-SGKKYKIMS-----EN 245
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLG 87
F + I + D+G Y+C A N +G
Sbjct: 246 FLTSIHILNVDSADIGEYQCKASNDVG 272
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 20 TLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79
T +C+V W +D + + Y++ ++ + LT+ K+TK D G Y
Sbjct: 24 TFKCHVTGTAPIKITWAKDNRE-IRPGGNYKM-----TLVENTATLTVLKVTKGDAGQYT 77
Query: 80 CIAKNSLGEVESSIRL 95
C A N G+ S +L
Sbjct: 78 CYASNVAGKDSCSAQL 93
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
Length = 104
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGD---MVISSERYEVESISRSIF 59
+H V P + V L C + W DQGD +V + + R F
Sbjct: 5 TVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF 64
Query: 60 DFKMRLTIKKITKYDLGSYKCI----AKNSLGEVE 90
+T K +T+ D G+Y C+ NS GEV+
Sbjct: 65 -LPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVK 98
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
HPV L GA DV LEC ++ P W +D+ ++ S ++Y++ S +
Sbjct: 200 HPV----ETLKGA----DVHLECELQGTPPFQVSWHKDKRELR-SGKKYKIMS-----EN 245
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLG 87
F + I + D+G Y+C A N +G
Sbjct: 246 FLTSIHILNVDSADIGEYQCKASNDVG 272
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 20 TLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79
T +C+V W +D + + Y++ ++ + LT+ K+TK D G Y
Sbjct: 24 TFKCHVTGTAPIKITWAKDNRE-IRPGGNYKM-----TLVENTATLTVLKVTKGDAGQYT 77
Query: 80 CIAKNSLGEVESSIRL 95
C A N G+ S +L
Sbjct: 78 CYASNVAGKDSCSAQL 93
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 23 CYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA 82
C P+SI+ W QG+ +IS++R V+ + RLTI D G Y+C A
Sbjct: 24 CTAIGEPESID-WYNPQGEKIISTQRVVVQKEG-----VRSRLTIYNANIEDAGIYRCQA 77
Query: 83 KNSLGEVESS 92
++ G+ + +
Sbjct: 78 TDAKGQTQEA 87
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 23 CYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA 82
C P+SI+ W QG+ +IS++R V+ + RLTI D G Y+C A
Sbjct: 22 CTAIGEPESID-WYNPQGEKIISTQRVVVQK-----EGVRSRLTIYNANIEDAGIYRCQA 75
Query: 83 KNSLGEVESS 92
++ G+ + +
Sbjct: 76 TDAKGQTQEA 85
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169
Of Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
++ TL C V +PK I W R +++ +Y ++ +L I +T D
Sbjct: 20 SNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH----QLIIASVTDDDAT 75
Query: 77 SYKCIAKNSLGEVESSIRL 95
Y+ A N G V + L
Sbjct: 76 VYQVRATNQGGSVSGTASL 94
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
++ TL C V +PK I W R +++ +Y ++ +L I +T D
Sbjct: 18 SNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH----QLIIASVTDDDAT 73
Query: 77 SYKCIAKNSLGEVESSIRL 95
Y+ A N G V + L
Sbjct: 74 VYQVRATNQGGSVSGTASL 92
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
V + C V AYP + W RD G ++ SS ++ + + L + ++ D G+
Sbjct: 35 QVNITCEVFAYPSATISWFRD-GQLLPSSNYSNIKIYNTPSASY---LEVTPDSENDFGN 90
Query: 78 YKCIAKNSLGE 88
Y C A N +G+
Sbjct: 91 YNCTAVNRIGQ 101
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
++ TL C V +PK I W R +++ +Y ++ +L I +T D
Sbjct: 20 SNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH----QLIIASVTDDDAT 75
Query: 77 SYKCIAKNSLGEVESSIRL 95
Y+ A N G V + L
Sbjct: 76 VYQVRATNQGGSVSGTASL 94
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 21 LECYVEAYPKSINYWVRDQGDM----VISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
+E V P +W+ + + +I E Y+ IS F K T Y+ G
Sbjct: 25 IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFN------KPTHYNNG 78
Query: 77 SYKCIAKNSLGEVESSIR 94
+Y IAKN LG +I
Sbjct: 79 NYTLIAKNPLGTANQTIN 96
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 33.1 bits (74), Expect = 0.044, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
A I +++ C P+ W+R+ G+ + S R EV L K++
Sbjct: 305 ADIGSNLRWGCAAAGKPRPTVRWLRN-GEPLASQNRVEV---------LAGDLRFSKLSL 354
Query: 73 YDLGSYKCIAKNSLGEVESSIRL 95
D G Y+C+A+N G + +S L
Sbjct: 355 EDSGMYQCVAENKHGTIYASAEL 377
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 12/75 (16%)
Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
A + VTLEC+ P W + G S+S + L I ++
Sbjct: 218 ALVGQQVTLECFAFGNPVPRIKWRKVDG------------SLSPQWTTAEPTLQIPSVSF 265
Query: 73 YDLGSYKCIAKNSLG 87
D G+Y+C A+NS G
Sbjct: 266 EDEGTYECEAENSKG 280
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Lar In
Complex With Sucrose Octasulphate
Length = 214
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 23 CYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA 82
C PK W++ +SS+R+EV +R+ ++ + D Y+C A
Sbjct: 28 CQATGEPKPRITWMKK--GKKVSSQRFEVIEFDDGAGSV-LRIQPLRVQR-DEAIYECTA 83
Query: 83 KNSLGEVESSIRL 95
NSLGE+ +S +L
Sbjct: 84 TNSLGEINTSAKL 96
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 23 CYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA 82
C PK W++ +SS+R+EV +R+ ++ + D Y+C A
Sbjct: 29 CQATGEPKPRITWMKK--GKKVSSQRFEVIEFDDGAGSV-LRIQPLRVQR-DEAIYECTA 84
Query: 83 KNSLGEVESSIRL 95
NSLGE+ +S +L
Sbjct: 85 TNSLGEINTSAKL 97
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
V LEC + A P +W R+ + +++R + + ++ L IK + K D G Y
Sbjct: 33 VKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTG----RVTLLIKDVNKKDAGWY 88
Query: 79 KCIAKNSLGEVESSIRL 95
A N G + RL
Sbjct: 89 TVSAVNEAGVTTCNTRL 105
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKIT 71
G PI+ + C V++ P + +W RD+ +V+ ++ ++ KM L I +
Sbjct: 115 GNPIN----ISCDVKSNPPASIHWRRDK--LVLPAKN--TTNLKTYSTGRKMILEIAPTS 166
Query: 72 KYDLGSYKCIAKNSLG 87
D G Y C A N +G
Sbjct: 167 DNDFGRYNCTATNHIG 182
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKIT 71
G PI+ + C V++ P + +W RD+ +V+ ++ ++ KM L I +
Sbjct: 115 GNPIN----ISCDVKSNPPASIHWRRDK--LVLPAKN--TTNLKTYSTGRKMILEIAPTS 166
Query: 72 KYDLGSYKCIAKNSLG 87
D G Y C A N +G
Sbjct: 167 DNDFGRYNCTATNHIG 182
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human
Apep-1
Length = 99
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
DV + V+ PK + W+R++ + R+ E+ RL I + D G
Sbjct: 22 DVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEG-----GLCRLRILAAERGDAGF 76
Query: 78 YKCIAKNSLGEVESSIRL 95
Y C A N G + RL
Sbjct: 77 YTCKAVNEYGARQCEARL 94
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVES---ISRSIFDFKMRLTIKKITKYDL 75
TL C E P W + G + +++ + S + S F +R+ + ++ D
Sbjct: 27 ATLNCKAEGRPTPTIEWYK--GGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDE 84
Query: 76 GSYKCIAKNSLGEVES 91
G Y C+A+N LGE S
Sbjct: 85 GVYVCVARNYLGEAVS 100
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVES---ISRSIFDFKMRLTIKKITKYDL 75
TL C E P W + G + +++ + S + S F +R+ + ++ D
Sbjct: 27 ATLNCKAEGRPTPTIEWYK--GGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDE 84
Query: 76 GSYKCIAKNSLGEVES 91
G Y C+A+N LGE S
Sbjct: 85 GVYVCVARNYLGEAVS 100
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 14/84 (16%)
Query: 11 VGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKK 69
VG P +EC +P+ W +D + ER + +L I
Sbjct: 125 VGEP----AVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRG---------GKLMITY 171
Query: 70 ITKYDLGSYKCIAKNSLGEVESSI 93
K D G Y C+ N +GE ES +
Sbjct: 172 TRKSDAGKYVCVGTNMVGERESEV 195
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.4 bits (67), Expect = 0.23, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 10 LVGAPIDTDVT------LECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKM 63
+V P D +VT L+C S+N+ + M S R + + +F
Sbjct: 315 IVEPPTDLNVTEGMAAELKCRTGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNFT- 373
Query: 64 RLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+T D G Y C+ NS G +S L
Sbjct: 374 -----NVTVQDTGQYTCMVTNSAGNTTASATL 400
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 23 CYVEAYPKSIN----YWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
C +E Y +S + VR + +SE+YE+ + D L +K ITK D G+Y
Sbjct: 23 CKIENYDQSTQVTWYFGVR----QLENSEKYEI-----TYEDGVAILYVKDITKLDDGTY 73
Query: 79 KCIAKNSLGEVESSIRLY 96
+C N GE S L+
Sbjct: 74 RCKVVNDYGEDSSYAELF 91
>pdb|2L7J|A Chain A, Solution Structure Of The Third Immunoglobulin-Like
Domain Of Nectin-1
Length = 95
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 17 TDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDL 75
TDV L C +A P + Y W G + VE+ +R++F F+ +T Y L
Sbjct: 23 TDVKLTCKADANPPATEYHWTTLNGSLPKG-----VEAQNRTLF-FRGPIT------YSL 70
Query: 76 -GSYKCIAKNSLG 87
G+Y C A N +G
Sbjct: 71 AGTYICEATNPIG 83
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 21 LECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80
C + P W+R +G ++ +S R++V + +K I + D G+Y
Sbjct: 28 FSCDTDGEPVPTVTWLR-KGQVLSTSARHQVTTT-----KYKSTFEISSVQASDEGNYSV 81
Query: 81 IAKNSLGEVESSIRL 95
+ +NS G+ E+ L
Sbjct: 82 VVENSEGKQEAEFTL 96
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 40 GDMVISSERYEVESISRSIFDFKMRLTIKKITKYD 74
GD+ ++S R E+ + S SI D MR+ ++K T D
Sbjct: 84 GDITVTSARREIVAFSNSISDNSMRILMRKGTLID 118
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 21 LECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80
C + P W+R +G ++ +S R++V + +K I + D G+Y
Sbjct: 34 FSCDTDGEPVPTVTWLR-KGQVLSTSARHQVTTT-----KYKSTFEISSVQASDEGNYSV 87
Query: 81 IAKNSLGEVESSIRL 95
+ +NS G+ E+ L
Sbjct: 88 VVENSEGKQEAEFTL 102
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
P I VP+ + I L C + P S W +D G +++++ + + S F
Sbjct: 108 PTISVPSSVT---IGNRAVLTCSEHDGSPPSEYSWFKD-GISMLTADAKKTRAFMNSSFT 163
Query: 61 FKMR---LTIKKITKYDLGSYKCIAKNSLG 87
+ L +T +D G Y C A+N G
Sbjct: 164 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYG 193
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
D L+C V P W+ + I R E+ L I+ D G+
Sbjct: 28 DFVLQCSVRGTPVPRITWLLN--GQPIQYARSTCEA-------GVAELHIQDALPEDHGT 78
Query: 78 YKCIAKNSLGEVESS 92
Y C+A+N+LG+V S
Sbjct: 79 YTCLAENALGQVSCS 93
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 15 IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYD 74
+D L+C P + W+++ R ++ + L IK + D
Sbjct: 22 VDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE--------QGTLQIKNLRISD 73
Query: 75 LGSYKCIAKNSLGEVESSIRL 95
G+Y C+A +S GE S L
Sbjct: 74 TGTYTCVATSSSGETSWSAVL 94
>pdb|3HG1|E Chain E, Germline-Governed Recognition Of A Cancer Epitope By An
Immunodominant Human T Cell Receptor
Length = 244
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 7 PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ------------GDMVISSERYEVESI 54
P LV P+ + ++LEC VE YW R G ISSE + S
Sbjct: 8 PATLV-QPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSA 66
Query: 55 SRSIFDFKMRLTIKKITKYDLGSYKCI-AKNSLGEVE 90
SR D + L+ KK+ D G Y C ++ LG E
Sbjct: 67 SRPQ-DRQFILSSKKLLLSDSGFYLCAWSETGLGTGE 102
>pdb|2Q87|A Chain A, The Crystal Structure Of The Human Irp60 Ectodomain
pdb|2Q87|B Chain B, The Crystal Structure Of The Human Irp60 Ectodomain
pdb|2Q87|C Chain C, The Crystal Structure Of The Human Irp60 Ectodomain
Length = 110
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 9 QLVGAPIDTDVTLECYVEAYPKSIN-YWVRDQG----DMVI-----SSERYEVESISRSI 58
+ V P+ ++++C E +++N YW R D ++ + +R SI S
Sbjct: 4 RTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSP 63
Query: 59 FDFKMRLTIKKITKYDLGSYKC 80
+ +T++ +T+ D G+Y C
Sbjct: 64 ANLSFTVTLENLTEEDAGTYWC 85
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 65 LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L + + D G+Y C+AKN GE +++L
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQL 94
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTI 67
+Q + + + +L C ++YP W + + + R + ++ + L I
Sbjct: 222 HQFIDVELASSYSLLCMAQSYPTPSFRWYK----FIEGTTRKQAVVLNDRVKQVSGTLII 277
Query: 68 KKITKYDLGSYKCIAKNSLG 87
K D G Y C+ NS+G
Sbjct: 278 KDAVVEDSGKYLCVVNNSVG 297
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
V L C E + +WV +Q V S R ++ + +R+ LT+ +T+ D+G Y
Sbjct: 307 VALTCEPEIQNTTYLWWVNNQSLPV--SPRLQLSNDNRT-------LTLLSVTRNDVGPY 357
Query: 79 KCIAKNSL 86
+C +N L
Sbjct: 358 ECGIQNEL 365
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
V C E + +WV +Q V S R ++ + +R+ LT+ +T+ D SY
Sbjct: 129 VAFTCEPETQDATYLWWVNNQSLPV--SPRLQLSNGNRT-------LTLFNVTRNDTASY 179
Query: 79 KCIAKNSLGEVES 91
KC +N + S
Sbjct: 180 KCETQNPVSARRS 192
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homo1
Length = 118
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTI 67
NQ V +D L C P W +D +++S++ ++ + + L I
Sbjct: 17 NQTVA--VDGTFVLSCVATGSPVPTILWRKD--GVLVSTQDSRIKQLENGV------LQI 66
Query: 68 KKITKYDLGSYKCIAKNSLGEV 89
+ D G Y CIA GE
Sbjct: 67 RYAKLGDTGRYTCIASTPSGEA 88
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.5 bits (62), Expect = 0.90, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 14/93 (15%)
Query: 10 LVGAPIDTDVT------LECYVEAYPKSINYWVRDQGD-MVISSERYEVESISRSIFDFK 62
+V P D +VT L+C S++ W+ G M + + + +S +F
Sbjct: 344 IVEPPADLNVTEGMAAELKCRASTSLTSVS-WITPNGTVMTHGAYKVRIAVLSDGTLNFT 402
Query: 63 MRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+T D G Y C+ NS+G +S L
Sbjct: 403 ------NVTVQDTGMYTCMVSNSVGNTTASATL 429
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 23 CYVEAYPKSINYWVRDQGDMVISSERYEV---ESISRSIFDFKMRLTIKKI-TKYDLGSY 78
C P+ W ++ +S++R+EV + S S+ L I+ + T D Y
Sbjct: 28 CQATGDPRPKIVW--NKKGKKVSNQRFEVIEFDDGSGSV------LRIQPLRTPRDEAIY 79
Query: 79 KCIAKNSLGEVESSIRL 95
+C+A N++GE+ S RL
Sbjct: 80 ECVASNNVGEISVSTRL 96
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESI-SRSIFD 60
P I + QL T+ C P W +D + S+ ++ + S SI
Sbjct: 109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESI-- 166
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLG 87
L I++ + D G Y+C+A NS G
Sbjct: 167 --GALQIEQSEESDQGKYECVATNSAG 191
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 15 IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYD 74
I + + C P W +D +V E + D LTI+++ K D
Sbjct: 680 IGESIEVSCTASGNPPPQIMWFKDNETLV--------EDSGIVLKDGNRNLTIRRVRKED 731
Query: 75 LGSYKCIAKNSLG 87
G Y C A + LG
Sbjct: 732 EGLYTCQACSVLG 744
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 35 WVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85
W +Q S +R EV S +F LTI K+ D G+YKC + +
Sbjct: 63 WPNNQSG---SEQRVEVTECSDGLF--CKTLTIPKVIGNDTGAYKCFYRET 108
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 15 IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYD 74
I + + C P W +D +V E + D LTI+++ K D
Sbjct: 24 IGESIEVSCTASGNPPPQIMWFKDNETLV--------EDSGIVLKDGNRNLTIRRVRKED 75
Query: 75 LGSYKCIAKNSLG 87
G Y C A + LG
Sbjct: 76 EGLYTCQACSVLG 88
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 23 CYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKI-TKYDLGSYKCI 81
C PK W ++ ++S+R+E S L I+ + T D Y+C+
Sbjct: 28 CQATGDPKPRVTW--NKKGKKVNSQRFETIEFDESAGAV---LRIQPLRTPRDENVYECV 82
Query: 82 AKNSLGEVESSIRL 95
A+NS+GE+ +L
Sbjct: 83 AQNSVGEITVHAKL 96
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 23 CYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKI-TKYDLGSYKCI 81
C PK W ++ ++S+R+E S L I+ + T D Y+C+
Sbjct: 28 CQATGDPKPRVTW--NKKGKKVNSQRFETIEFDESAGAV---LRIQPLRTPRDENVYECV 82
Query: 82 AKNSLGEVESSIRL 95
A+NS+GE+ +L
Sbjct: 83 AQNSVGEITVHAKL 96
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 65 LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I+ +T D G Y CIA N G+ S+ L
Sbjct: 68 LIIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 65 LTIKKITKYDLGSYKCIAKNSLG 87
L I+ +T D G Y C+A NS+G
Sbjct: 181 LYIRNVTFEDAGEYTCLAGNSIG 203
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 65 LTIKKITKYDLGSYKCIAKNSLG 87
L I+ +T D G Y C+A NS+G
Sbjct: 181 LYIRNVTFEDAGEYTCLAGNSIG 203
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 65 LTIKKITKYDLGSYKCIAKNSLG 87
L I+ +T D G Y C+A NS+G
Sbjct: 180 LYIRNVTFEDAGEYTCLAGNSIG 202
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 65 LTIKKITKYDLGSYKCIAKNSLG 87
L I+ +T D G Y C+A NS+G
Sbjct: 181 LYIRNVTFEDAGEYTCLAGNSIG 203
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 65 LTIKKITKYDLGSYKCIAKNSLG 87
L I+ +T D G Y C+A NS+G
Sbjct: 181 LYIRNVTFEDAGEYTCLAGNSIG 203
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 65 LTIKKITKYDLGSYKCIAKNSLG 87
L I+ +T D G Y C+A NS+G
Sbjct: 179 LYIRNVTFEDAGEYTCLAGNSIG 201
>pdb|2JJW|A Chain A, Structure Of Human Signal Regulatory Protein (Sirp)
Gamma
Length = 127
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query: 7 PNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQG---DMVISSERYEVESIS------- 55
P +L+ + TL C V + P W R G +++ + + ++
Sbjct: 9 PEKLLLVTVGKTATLHCTVTSLLPVGPVLWFRGVGPGRELIYNQKEGHFPRVTTVSDLTK 68
Query: 56 RSIFDFKMRLTIKKITKYDLGSYKCI 81
R+ DF +R I IT D+G+Y C+
Sbjct: 69 RNNMDFSIR--ISSITPADVGTYYCV 92
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 33 NYWVRDQGDMVISSERYEVESI-SRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88
+ WV D+ + + R VE+ RSIF T++ K D G Y KN +GE
Sbjct: 78 DEWVFDKKLLCETEGRVRVETTKDRSIF------TVEGAEKEDEGVYTVTVKNPVGE 128
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
++L C + +P W + + + R + ++ + L IK D G Y
Sbjct: 236 ISLLCPAQGFPAPSFRWYK----FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKY 291
Query: 79 KCIAKNSLG 87
C+ NS+G
Sbjct: 292 LCVVNNSVG 300
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIK 68
+L+ P V C P W+++ + R E + + L ++
Sbjct: 23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREF-----RGEHRIGGIKLRHQQWSLVME 77
Query: 69 KITKYDLGSYKCIAKNSLGEVESSIRL 95
+ D G+Y C+ +N G + + L
Sbjct: 78 SVVPSDRGNYTCVVENKFGSIRQTYTL 104
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
++L C + +P W + + + R + ++ + L IK D G Y
Sbjct: 230 ISLLCPAQGFPAPSFRWYK----FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKY 285
Query: 79 KCIAKNSLG 87
C+ NS+G
Sbjct: 286 LCVVNNSVG 294
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 65 LTIKKITKYDLGSYKCIAKNSLG 87
L++ +T D G Y C+A NS+G
Sbjct: 293 LSLHNVTFEDAGEYTCLAGNSIG 315
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 13/91 (14%)
Query: 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRD----QGDMVISSERYEVESISRSIFDFKMR 64
+L+ P V C P W+++ +G+ I + + S
Sbjct: 131 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWS--------- 181
Query: 65 LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L ++ + D G+Y C+ +N G + + L
Sbjct: 182 LVMESVVPSDRGNYTCVVENKFGSIRQTYTL 212
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From
Human Advanced Glycosylation End Product-Specific
Receptor
Length = 96
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 16/73 (21%)
Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
AP T VTL C V A P +W++D L + +I
Sbjct: 23 APGGT-VTLTCEVPAQPSPQIHWMKDG---------------VPLPLPPSPVLILPEIGP 66
Query: 73 YDLGSYKCIAKNS 85
D G+Y C+A +S
Sbjct: 67 QDQGTYSCVATHS 79
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 16/73 (21%)
Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
AP T VTL C V A P +W++D L + +I
Sbjct: 16 APGGT-VTLTCEVPAQPSPQIHWMKDG---------------VPLPLPPSPVLILPEIGP 59
Query: 73 YDLGSYKCIAKNS 85
D G+Y C+A +S
Sbjct: 60 QDQGTYSCVATHS 72
>pdb|3CSP|A Chain A, Crystal Structure Of The Dm2 Mutant Of Myelin
Oligodendrocyte Glycoprotein
Length = 139
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 37 RDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+DQ R E + SI + K+ L I+ + D G Y C +++ + E+++ L
Sbjct: 59 KDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDAEYQEEAAVEL 117
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of
Human Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 23 CYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKI-TKYDLGSYKCI 81
C PK W ++ ++S+R+E S L I+ + T D Y+C+
Sbjct: 28 CQATGDPKPRVTW--NKKGKKVNSQRFETIEFDESA---GAVLRIQPLRTPRDENVYECV 82
Query: 82 AKNSLGEVESSIRL 95
A+NS+GE+ +L
Sbjct: 83 AQNSVGEITVHAKL 96
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 15 IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYD 74
+ +VTLEC+ P W + M ++E IS S L I I D
Sbjct: 127 MGQNVTLECFALGNPVPDIRWRKVLEPMPSTAE------ISTS----GAVLKIFNIQLED 176
Query: 75 LGSYKCIAKNSLGEVESSIRLY 96
G Y+C A+N G+ + R+Y
Sbjct: 177 EGIYECEAENIRGKDKHQARIY 198
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 29 PKSINYWVRDQGDMVISSE---RYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85
PKS W +D +S+E R EVES K ++T K + DLG Y C ++
Sbjct: 30 PKSEFSWSKD----YVSTEDSPRLEVESKGN-----KTKMTFKDLGMDDLGIYSCDVTDT 80
Query: 86 LG 87
G
Sbjct: 81 DG 82
>pdb|2W00|A Chain A, Crystal Structure Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2W00|B Chain B, Crystal Structure Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
Length = 1038
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 32 INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
+NY V D ++ Y++ + R ++ K T K +K + G Y
Sbjct: 258 VNYSVFDSSQTLLVXRPYQIAATERILWKIKSSFTAKNWSKPESGGY 304
>pdb|1PKO|A Chain A, Myelin Oligodendrocyte Glycoprotein (Mog)
Length = 139
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 37 RDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+DQ R E + SI + K+ L I+ + D G Y C ++ + E+++ L
Sbjct: 59 KDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 117
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
T+ C P W +D + S+ ++ + L I+ + D G Y
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSG------GLQIESSEETDQGKY 179
Query: 79 KCIAKNSLG 87
+C+A NS G
Sbjct: 180 ECVASNSAG 188
>pdb|1WAF|A Chain A, Dna Polymerase From Bacteriophage Rb69
pdb|1WAF|B Chain B, Dna Polymerase From Bacteriophage Rb69
pdb|1CLQ|A Chain A, Crystal Structure Of A Replication Fork Dna Polymerase
Editing Complex At 2.7 A Resolution
pdb|1IH7|A Chain A, High-Resolution Structure Of Apo Rb69 Dna Polymerase
pdb|1WAJ|A Chain A, Dna Polymerase From Bacteriophage Rb69
pdb|3UIQ|A Chain A, Rb69 Dna Polymerase Ternary Complex Containing Dupnpp
Length = 903
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 502 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 557
>pdb|3SUN|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Dttp
Opposite 2ap (At Rich Sequence)
Length = 895
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 502 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 557
>pdb|2DTU|A Chain A, Crystal Structure Of The Beta Hairpin Loop Deletion
Variant Of Rb69 Gp43 In Complex With Dna Containing An
Abasic Site Analog
pdb|2DTU|B Chain B, Crystal Structure Of The Beta Hairpin Loop Deletion
Variant Of Rb69 Gp43 In Complex With Dna Containing An
Abasic Site Analog
pdb|2DTU|C Chain C, Crystal Structure Of The Beta Hairpin Loop Deletion
Variant Of Rb69 Gp43 In Complex With Dna Containing An
Abasic Site Analog
pdb|2DTU|D Chain D, Crystal Structure Of The Beta Hairpin Loop Deletion
Variant Of Rb69 Gp43 In Complex With Dna Containing An
Abasic Site Analog
Length = 896
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 495 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 550
>pdb|3SPZ|A Chain A, Dna Polymerase(L415aL561AS565GY567A) TERNARY COMPLEX WITH
DUPCPP Opposite Da (Ca2+)
pdb|4FJ5|A Chain A, Rb69 Dna Polymerase Ternary Complex With Datp/dt
pdb|4FJ7|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dgtp/dt
pdb|4FJ8|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dctp/dt
pdb|4FJ9|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dttp/dt
pdb|4FJG|A Chain A, Rb69 Dna Polymerase Ternary Complex With Datp/dc
pdb|4FJH|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dgtp/dc
pdb|4FJI|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dctp/dc
pdb|4FJJ|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dttp/dc
pdb|4FJK|A Chain A, Rb69 Dna Polymerase Ternary Complex With Datp/da
pdb|4FJL|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dgtp/da
pdb|4FJN|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dttp/da
pdb|4FJX|A Chain A, Rb69 Dna Polymerase Ternary Complex With Datp/dg
pdb|4FK0|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dctp/dg
pdb|4FK2|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dttp/dg
pdb|4FK4|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dgtp/dg
Length = 903
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 502 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 557
>pdb|1IG9|A Chain A, Structure Of The Replicating Complex Of A Pol Alpha Family
Dna Polymerase
pdb|1Q9X|A Chain A, Crystal Structure Of Enterobacteria Phage Rb69 Gp43 Dna
Polymerase Complexed With Tetrahydrofuran Containing Dna
pdb|1Q9X|B Chain B, Crystal Structure Of Enterobacteria Phage Rb69 Gp43 Dna
Polymerase Complexed With Tetrahydrofuran Containing Dna
pdb|1Q9X|C Chain C, Crystal Structure Of Enterobacteria Phage Rb69 Gp43 Dna
Polymerase Complexed With Tetrahydrofuran Containing Dna
pdb|1Q9X|D Chain D, Crystal Structure Of Enterobacteria Phage Rb69 Gp43 Dna
Polymerase Complexed With Tetrahydrofuran Containing Dna
pdb|2ATQ|A Chain A, Rb69 Single-Stranded Dna Binding Protein-Dna Polymerase
Fusion
pdb|2OYQ|A Chain A, Crystal Structure Of Rb69 Gp43 In Complex With Dna With 5-
Nimp Opposite An Abasic Site Analog
pdb|2OYQ|B Chain B, Crystal Structure Of Rb69 Gp43 In Complex With Dna With 5-
Nimp Opposite An Abasic Site Analog
pdb|2OYQ|C Chain C, Crystal Structure Of Rb69 Gp43 In Complex With Dna With 5-
Nimp Opposite An Abasic Site Analog
pdb|2OYQ|D Chain D, Crystal Structure Of Rb69 Gp43 In Complex With Dna With 5-
Nimp Opposite An Abasic Site Analog
pdb|2OZM|A Chain A, Crystal Structure Of Rb69 Gp43 In Complex With Dna With 5-
Nitp Opposite An Abasic Site Analog
pdb|2OZS|A Chain A, Crystal Structure Of Rb69 Gp43 In Complex With Dna With
Datp Opposite Dtmp
pdb|3NCI|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dctp Opposite Dg
At 1.8 Angstrom Resolution
pdb|4DU1|A Chain A, Rb69 Dna Polymerase Ternary Complex With Datp Opposite Dt
pdb|4DU3|A Chain A, Rb69 Dna Polymerase Ternary Complex With Ddtp Opposite Dt
With 3- Deaza-Adenine At The N-1 Position Of Template
Strand
pdb|4DU4|A Chain A, Rb69 Dna Polymerase Ternary Complex With Datp Opposite Dt
With 3- Deaza-Adenine At The N-3 Position Of Primer
Strand
Length = 903
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 502 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 557
>pdb|3SQ2|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dttp Opposite 2ap
(At Rich Sequence)
pdb|3SQ4|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dttp Opposite 2ap
(Gc Rich Sequence)
Length = 902
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 502 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 557
>pdb|3SCX|A Chain A, Rb69 Dna Polymerase Triple Mutant(L561aS565GY567A) TERNARY
COMPLEX With Dupnpp And A Deoxy-Terminated Primer In The
Presence Of Ca2+
pdb|3SI6|A Chain A, Rb69 Dna Polymerase Triple Mutant (L561aS565GY567A)
TERNARY COMPLEX With Dupnpp And A Deoxy-Terminated
Primer In The Presence Of Mg2+
pdb|3SJJ|A Chain A, Rb69 Dna Polymerase Triple Mutant (L561aS565GY567A)
TERNARY COMPLEX With Dupnpp And A Deoxy-Terminated
Primer In The Presence Of Mn2+
pdb|3SNN|A Chain A, Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPLEX WITH
DCTP Opposite Dg In The Presence Of Mg2+
Length = 903
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 502 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 557
>pdb|3NE6|A Chain A, Rb69 Dna Polymerase (S565gY567A) TERNARY COMPLEX WITH DCTP
OPPOSITE Dg
pdb|3NHG|A Chain A, Rb69 Dna Polymerase (S565gY567A) TERNARY COMPLEX WITH DTTP
OPPOSITE Dg
Length = 903
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 502 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 557
>pdb|3LDS|A Chain A, Crystal Structure Of Rb69 Gp43 With Dna And Datp Opposite
8-
Length = 903
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 502 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 557
>pdb|3CFO|A Chain A, Triple Mutant Apo Structure
pdb|3CFP|A Chain A, Structure Of The Replicating Complex Of A Pol Alpha Family
Dna Polymerase, Ternary Complex 1
pdb|3CFR|A Chain A, Structure Of The Replicating Complex Of A Pol Alpha Family
Dna Polymerase, Ternary Complex 2
Length = 909
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 502 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 557
>pdb|3SPY|A Chain A, Rb69 Dna Polymerase(L415aL561AS565GY567A) TERNARY COMPLEX
WITH Dupcpp Opposite Da
Length = 901
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 502 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 557
>pdb|3LZI|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Datp
Opposite 7,8- Dihydro-8-Oxoguanine
pdb|3LZJ|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Dctp
Opposite 7,8- Dihydro-8-Oxoguanine
pdb|3NAE|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Datp
Opposite Guanidinohydantoin
pdb|3NDK|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Dctp
Opposite Dg
pdb|3NGI|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Dttp
Opposite Dg
pdb|3SUP|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Dctp
Opposite 2ap (Gc Rich Sequence)
Length = 903
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 502 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 557
>pdb|3CQ8|A Chain A, Ternary Complex Of The L415f Mutant Rb69 Exo(-)polymerase
Length = 903
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 502 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 557
>pdb|1Q9Y|A Chain A, Crystal Structure Of Enterobacteria Phage Rb69 Gp43 Dna
Polymerase Complexed With 8-Oxoguanosine Containing Dna
Length = 906
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 505 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 560
>pdb|1PKQ|E Chain E, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
pdb|1PKQ|J Chain J, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
Length = 139
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 37 RDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+DQ R E + SI + K+ L I+ + D G Y C ++ + E+++ L
Sbjct: 59 KDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 117
>pdb|4DTJ|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dttp Opposite An
Abasic Site And DdtDA AS THE PENULTIMATE BASE-Pair
pdb|4DTM|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dctp Opposite An
Abasic Site And DdgDC AS THE PENULTIMATE BASE-Pair
Length = 901
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 502 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 557
>pdb|3SUQ|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Dctp
Opposite 2ap (At Rich Sequence)
Length = 897
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 502 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 557
>pdb|3QEP|A Chain A, Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPLEX WITH
DTTP Opposite Difluorotoluene Nucleoside
pdb|3S9H|A Chain A, Rb69 Dna Polymerase Triple Mutant(L561aS565GY567A) TERNARY
COMPLEX With Dupnpp And A Dideoxy-Terminated Primer In
The Presence Of Ca2+
pdb|3SQ0|A Chain A, Dna Polymerase(L561aS565GY567A) TERNARY COMPLEX WITH
DUPNPP OPPOSITE Da (Mn2+)
pdb|3QEI|A Chain A, Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPLEX WITH
DCTP Opposite Difluorotoluene Nucleoside
pdb|3QER|A Chain A, Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPLEX WITH
DATP Opposite Difluorotoluene Nucleoside
pdb|3QES|A Chain A, Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPLEX WITH
DGTP Opposite Difluorotoluene Nucleoside
pdb|3QET|A Chain A, Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPLEX WITH
DTTP Opposite Dt
pdb|3QEV|A Chain A, Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPLEX WITH
DCTP Opposite Dt
pdb|3QEW|A Chain A, Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPLEX WITH
DDTP Opposite Dt
pdb|3QEX|A Chain A, Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPLEX WITH
DGTP Opposite Dt
pdb|4E3S|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dqtp Opposite Dt
pdb|4DTN|A Chain A, Rb69 Dna Polymerase Ternary Complex With Datp Opposite An
Abasic Site And DdaDT AS THE PENULTIMATE BASE-Pair
pdb|4DTO|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dctp Opposite An
Abasic Site And DdaDT AS THE PENULTIMATE BASE-Pair
pdb|4DTP|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dgtp Opposite An
Abasic Site And DdaDT AS THE PENULTIMATE BASE-Pair
pdb|4DTR|A Chain A, Rb69 Dna Polymerase Ternary Complex With Datp Opposite An
Abasic Site And DdcDG AS THE PENULTIMATE BASE-Pair
pdb|4DTS|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dctp Opposite An
Abasic Site And DdcDG AS THE PENULTIMATE BASE-Pair
pdb|4DTU|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dgtp Opposite An
Abasic Site And DdcDG AS THE PENULTIMATE BASE-Pair
pdb|4DTX|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dttp Opposite An
Abasic Site And DdcDG AS THE PENULTIMATE BASE-Pair
pdb|4FJM|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dctp/da
Length = 903
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 502 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 557
>pdb|3RWU|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Datp
Opposite Difluorotoluene Nucleoside
pdb|3QNN|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Dgt
Opposite 3tco
pdb|3QNO|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Datp
Opposite 3tco
Length = 901
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 502 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 557
>pdb|3L8B|A Chain A, Crystal Structure Of A Replicative Dna Polymerase Bound To
The Oxidized Guanine Lesion Guanidinohydantoin
pdb|3L8B|B Chain B, Crystal Structure Of A Replicative Dna Polymerase Bound To
The Oxidized Guanine Lesion Guanidinohydantoin
pdb|3RMA|A Chain A, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMA|B Chain B, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMA|C Chain C, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMA|D Chain D, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMB|A Chain A, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMB|B Chain B, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMB|C Chain C, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMB|D Chain D, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMC|A Chain A, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMC|B Chain B, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMC|C Chain C, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMC|D Chain D, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMD|A Chain A, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMD|B Chain B, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMD|C Chain C, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3RMD|D Chain D, Crystal Structure Of A Replicative Dna Polymerase Bound To
Dna Containing Thymine Glycol
pdb|3TAB|A Chain A, 5-Hydroxycytosine Paired With Dgmp In Rb69 Gp43
pdb|3TAB|B Chain B, 5-Hydroxycytosine Paired With Dgmp In Rb69 Gp43
pdb|3TAB|C Chain C, 5-Hydroxycytosine Paired With Dgmp In Rb69 Gp43
pdb|3TAB|D Chain D, 5-Hydroxycytosine Paired With Dgmp In Rb69 Gp43
pdb|3TAE|A Chain A, 5-Hydroxycytosine Paired With Damp In Rb69 Gp43
pdb|3TAE|B Chain B, 5-Hydroxycytosine Paired With Damp In Rb69 Gp43
pdb|3TAE|C Chain C, 5-Hydroxycytosine Paired With Damp In Rb69 Gp43
pdb|3TAE|D Chain D, 5-Hydroxycytosine Paired With Damp In Rb69 Gp43
pdb|3TAF|A Chain A, 5-Fluorocytosine Paired With Ddgmp In Rb69 Gp43
pdb|3TAF|B Chain B, 5-Fluorocytosine Paired With Ddgmp In Rb69 Gp43
pdb|3TAF|C Chain C, 5-Fluorocytosine Paired With Ddgmp In Rb69 Gp43
pdb|3TAF|D Chain D, 5-Fluorocytosine Paired With Ddgmp In Rb69 Gp43
pdb|3TAG|A Chain A, 5-Fluorocytosine Paired With Damp In Rb69 Gp43
pdb|3TAG|B Chain B, 5-Fluorocytosine Paired With Damp In Rb69 Gp43
pdb|3TAG|C Chain C, 5-Fluorocytosine Paired With Damp In Rb69 Gp43
pdb|3TAG|D Chain D, 5-Fluorocytosine Paired With Damp In Rb69 Gp43
Length = 906
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 502 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 557
>pdb|3SUO|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Dttp
Opposite 2ap (Gc Rich Sequence)
Length = 900
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 502 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 557
>pdb|3SQ1|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dupcpp Opposite
Da
Length = 901
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+H PN V P+D D + E K + +M+ ++R EV ++ I
Sbjct: 502 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQI 557
>pdb|2Y3T|A Chain A, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2Y3T|B Chain B, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2Y3T|C Chain C, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2Y3T|D Chain D, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
Length = 1033
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 32 INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
+NY V D ++ Y++ + R ++ K T K +K + G Y
Sbjct: 258 VNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGY 304
>pdb|2W74|B Chain B, Mutant (K220r) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2W74|D Chain D, Mutant (K220r) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
Length = 875
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 32 INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
+NY V D ++ Y++ + R ++ K T K +K + G Y
Sbjct: 247 VNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGY 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,664,156
Number of Sequences: 62578
Number of extensions: 90349
Number of successful extensions: 561
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 393
Number of HSP's gapped (non-prelim): 173
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)