Query psy4613
Match_columns 96
No_of_seqs 105 out of 1943
Neff 12.5
Searched_HMMs 46136
Date Fri Aug 16 21:23:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05747 Ig5_Titin_like M5, fif 99.8 3.1E-18 6.8E-23 78.4 11.7 89 1-95 3-91 (92)
2 cd05851 Ig3_Contactin-1 Third 99.8 1.2E-18 2.5E-23 79.2 9.3 86 1-96 1-86 (88)
3 cd05762 Ig8_MLCK Eighth immuno 99.8 5.7E-18 1.2E-22 78.3 11.3 88 2-95 1-88 (98)
4 cd05894 Ig_C5_MyBP-C C5 immuno 99.8 2.8E-17 6E-22 74.4 11.5 82 9-95 3-84 (86)
5 PF07679 I-set: Immunoglobulin 99.8 1.3E-16 2.9E-21 72.7 11.7 88 2-95 1-88 (90)
6 cd05869 Ig5_NCAM-1 Fifth immun 99.8 1.4E-16 3.1E-21 73.6 11.8 90 1-95 2-95 (97)
7 cd05730 Ig3_NCAM-1_like Third 99.8 4.1E-17 8.9E-22 75.1 9.6 88 1-95 1-90 (95)
8 cd04968 Ig3_Contactin_like Thi 99.8 1.2E-16 2.7E-21 72.6 10.4 85 1-95 1-85 (88)
9 cd05737 Ig_Myomesin_like_C C-t 99.7 3.6E-16 7.9E-21 71.6 11.5 85 6-95 6-90 (92)
10 cd05892 Ig_Myotilin_C C-termin 99.7 1.5E-16 3.3E-21 70.2 9.5 73 19-95 1-73 (75)
11 cd04972 Ig_TrkABC_d4 Fourth do 99.7 5.6E-16 1.2E-20 70.7 11.6 84 6-95 5-88 (90)
12 cd05867 Ig4_L1-CAM_like Fourth 99.7 1.3E-16 2.7E-21 70.8 8.8 73 16-95 1-73 (76)
13 cd05870 Ig5_NCAM-2 Fifth immun 99.7 1.1E-15 2.3E-20 70.8 11.5 89 1-95 2-96 (98)
14 cd05745 Ig3_Peroxidasin Third 99.7 7.8E-17 1.7E-21 71.1 7.4 72 15-95 1-72 (74)
15 cd05852 Ig5_Contactin-1 Fifth 99.7 1.3E-16 2.9E-21 70.1 8.1 71 16-95 1-71 (73)
16 cd04975 Ig4_SCFR_like Fourth i 99.7 9.2E-16 2E-20 71.2 11.2 86 9-95 11-97 (101)
17 cd05866 Ig1_NCAM-2 First immun 99.7 1.2E-15 2.5E-20 69.8 11.3 80 5-90 4-83 (92)
18 cd05728 Ig4_Contactin-2-like F 99.7 2.7E-16 5.8E-21 71.1 9.1 80 6-95 4-83 (85)
19 cd05865 Ig1_NCAM-1 First immun 99.7 1.7E-15 3.6E-20 69.8 11.3 87 5-95 4-93 (96)
20 cd05735 Ig8_DSCAM Eight immuno 99.7 1.2E-15 2.6E-20 69.3 10.6 79 16-95 1-79 (88)
21 cd05732 Ig5_NCAM-1_like Fifth 99.7 1.2E-15 2.5E-20 70.4 10.7 89 1-95 2-94 (96)
22 cd05859 Ig4_PDGFR-alpha Fourth 99.7 5.1E-16 1.1E-20 72.1 9.2 85 10-95 12-97 (101)
23 cd05893 Ig_Palladin_C C-termin 99.7 6E-16 1.3E-20 68.3 9.0 73 19-95 1-73 (75)
24 cd05773 Ig8_hNephrin_like Eigh 99.7 1.6E-15 3.5E-20 71.4 10.8 94 1-95 4-102 (109)
25 cd05744 Ig_Myotilin_C_like Imm 99.7 1.1E-15 2.4E-20 67.5 9.7 73 19-95 1-73 (75)
26 cd05868 Ig4_NrCAM Fourth immun 99.7 7E-16 1.5E-20 68.3 8.8 73 16-95 1-73 (76)
27 cd05758 Ig5_KIRREL3-like Fifth 99.7 4.6E-15 9.9E-20 68.7 11.8 93 1-95 2-97 (98)
28 cd05857 Ig2_FGFR Second immuno 99.7 1.8E-15 3.9E-20 68.3 9.9 80 11-95 4-83 (85)
29 cd05891 Ig_M-protein_C C-termi 99.7 2.8E-15 6E-20 68.6 10.3 85 6-95 6-90 (92)
30 cd05748 Ig_Titin_like Immunogl 99.7 4.1E-15 8.8E-20 65.6 10.2 71 19-95 2-72 (74)
31 cd05723 Ig4_Neogenin Fourth im 99.7 2E-15 4.4E-20 66.0 9.1 69 18-95 1-69 (71)
32 cd05740 Ig_CEACAM_D4 Fourth im 99.7 1.8E-15 4E-20 69.1 8.9 81 1-91 1-83 (91)
33 cd04978 Ig4_L1-NrCAM_like Four 99.7 1.5E-15 3.1E-20 67.3 8.2 73 16-95 1-73 (76)
34 cd05856 Ig2_FGFRL1-like Second 99.7 2.8E-15 6E-20 67.2 9.1 78 10-95 3-80 (82)
35 cd04969 Ig5_Contactin_like Fif 99.7 1.8E-15 3.8E-20 66.6 8.2 71 16-95 1-71 (73)
36 cd05743 Ig_Perlecan_D2_like Im 99.7 4.2E-15 9E-20 66.2 8.8 72 16-93 1-72 (78)
37 cd05746 Ig4_Peroxidasin Fourth 99.7 1.5E-15 3.3E-20 66.1 7.2 68 19-95 1-68 (69)
38 cd05849 Ig1_Contactin-1 First 99.7 5E-15 1.1E-19 67.9 9.2 82 1-91 1-86 (93)
39 cd05855 Ig_TrkB_d5 Fifth domai 99.7 7.4E-15 1.6E-19 65.2 9.3 75 20-95 2-76 (79)
40 cd07693 Ig1_Robo First immunog 99.7 1.4E-14 3E-19 67.1 10.7 91 1-94 1-96 (100)
41 cd05863 Ig2_VEGFR-3 Second imm 99.7 2.8E-15 6.1E-20 64.7 7.4 61 19-93 1-61 (67)
42 cd05760 Ig2_PTK7 Second immuno 99.7 2.8E-15 6.1E-20 66.6 7.4 65 19-90 1-65 (77)
43 cd05764 Ig_2 Subgroup of the i 99.6 7.6E-15 1.6E-19 64.7 8.6 72 16-95 1-72 (74)
44 cd05876 Ig3_L1-CAM Third immun 99.6 2.4E-15 5.1E-20 65.8 6.7 68 19-95 1-68 (71)
45 cd05848 Ig1_Contactin-5 First 99.6 3.6E-14 7.7E-19 65.2 10.5 82 2-91 2-87 (94)
46 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 1.6E-14 3.5E-19 62.8 8.7 68 16-95 1-68 (69)
47 cd05726 Ig4_Robo Fhird immunog 99.6 7E-15 1.5E-19 67.1 7.9 72 16-95 1-79 (90)
48 cd04977 Ig1_NCAM-1_like First 99.6 1.1E-13 2.3E-18 63.4 11.7 86 5-95 4-90 (92)
49 cd05850 Ig1_Contactin-2 First 99.6 7.9E-14 1.7E-18 64.1 11.2 81 2-91 2-87 (94)
50 cd05763 Ig_1 Subgroup of the i 99.6 6.6E-15 1.4E-19 65.1 7.2 70 19-95 1-72 (75)
51 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 4.5E-14 9.9E-19 63.2 9.8 75 20-95 2-78 (81)
52 cd04973 Ig1_FGFR First immunog 99.6 2.7E-14 5.8E-19 63.7 9.0 76 9-95 2-77 (79)
53 cd05725 Ig3_Robo Third immunog 99.6 1.4E-14 3E-19 63.0 7.9 67 19-95 1-67 (69)
54 cd05724 Ig2_Robo Second immuno 99.6 1.9E-14 4.1E-19 65.1 8.6 75 8-90 3-78 (86)
55 cd05898 Ig5_KIRREL3 Fifth immu 99.6 1.7E-13 3.6E-18 63.2 11.4 93 1-95 2-97 (98)
56 cd05731 Ig3_L1-CAM_like Third 99.6 6.6E-15 1.4E-19 64.3 6.5 68 19-95 1-68 (71)
57 cd04976 Ig2_VEGFR Second immun 99.6 1.2E-14 2.7E-19 63.5 7.1 65 19-93 1-65 (71)
58 cd05754 Ig3_Perlecan_like Thir 99.6 2.6E-14 5.6E-19 64.6 8.4 79 6-96 6-85 (85)
59 cd05756 Ig1_IL1R_like First im 99.6 4.4E-14 9.5E-19 64.9 8.0 79 10-95 8-92 (94)
60 cd05864 Ig2_VEGFR-2 Second imm 99.6 2.2E-14 4.9E-19 62.5 6.6 62 19-91 1-62 (70)
61 cd05854 Ig6_Contactin-2 Sixth 99.6 2.5E-13 5.5E-18 61.3 10.1 75 17-95 1-79 (85)
62 cd04974 Ig3_FGFR Third immunog 99.6 8.2E-14 1.8E-18 63.6 8.5 80 16-95 1-87 (90)
63 cd05858 Ig3_FGFR-2 Third immun 99.6 1.2E-13 2.6E-18 63.0 9.1 80 16-95 1-87 (90)
64 cd05765 Ig_3 Subgroup of the i 99.6 1.6E-13 3.6E-18 61.3 8.6 76 16-95 1-79 (81)
65 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 8.4E-14 1.8E-18 61.4 7.4 63 19-89 1-64 (74)
66 cd05729 Ig2_FGFR_like Second i 99.6 5.1E-13 1.1E-17 60.1 10.2 80 11-95 4-83 (85)
67 cd04970 Ig6_Contactin_like Six 99.6 1.8E-13 3.9E-18 61.8 8.4 75 17-95 1-79 (85)
68 cd05742 Ig1_VEGFR_like First i 99.6 3.9E-13 8.4E-18 60.6 9.4 79 16-95 1-81 (84)
69 cd05750 Ig_Pro_neuregulin Immu 99.5 3.8E-13 8.3E-18 59.3 8.7 73 19-94 1-74 (75)
70 cd07702 Ig2_VEGFR-1 Second imm 99.5 1.1E-13 2.5E-18 60.5 6.6 62 20-90 2-63 (72)
71 cd05749 Ig2_Tyro3_like Second 99.5 3.4E-13 7.4E-18 60.3 8.1 71 7-91 4-75 (81)
72 cd05736 Ig2_Follistatin_like S 99.5 2.5E-13 5.5E-18 60.1 7.5 71 19-95 1-71 (76)
73 cd05722 Ig1_Neogenin First imm 99.5 9.9E-13 2.1E-17 60.5 9.4 76 7-90 5-87 (95)
74 cd04967 Ig1_Contactin First Ig 99.5 1.8E-12 3.9E-17 59.2 10.1 81 2-91 2-87 (91)
75 cd05734 Ig7_DSCAM Seventh immu 99.5 1.1E-12 2.3E-17 58.5 7.7 63 19-89 1-70 (79)
76 cd05861 Ig1_PDGFR-alphabeta Fr 99.5 1.3E-11 2.9E-16 55.6 11.0 69 16-87 1-70 (84)
77 cd05874 Ig6_NrCAM Sixth immuno 99.5 1.2E-12 2.6E-17 58.1 7.1 66 19-91 1-71 (77)
78 cd05875 Ig6_hNeurofascin_like 99.5 2.1E-12 4.6E-17 57.3 7.9 67 19-92 1-72 (77)
79 cd05752 Ig1_FcgammaR_like Frst 99.5 2.9E-12 6.3E-17 56.9 8.3 67 2-85 1-68 (78)
80 cd05873 Ig_Sema4D_like Immunog 99.5 2.3E-12 5E-17 58.2 7.9 68 8-85 3-70 (87)
81 cd05853 Ig6_Contactin-4 Sixth 99.5 2.5E-12 5.5E-17 57.9 8.0 75 17-95 1-79 (85)
82 cd05895 Ig_Pro_neuregulin-1 Im 99.5 4.2E-12 9.1E-17 56.2 8.5 71 19-94 1-75 (76)
83 cd05882 Ig1_Necl-1 First (N-te 99.4 2.4E-11 5.1E-16 55.9 10.8 72 9-84 5-83 (95)
84 cd05733 Ig6_L1-CAM_like Sixth 99.4 1.6E-12 3.5E-17 57.7 6.6 66 19-91 1-71 (77)
85 cd04979 Ig_Semaphorin_C Immuno 99.4 2.9E-12 6.3E-17 58.3 7.5 80 8-95 3-84 (89)
86 cd07701 Ig1_Necl-3 First (N-te 99.4 8.1E-11 1.8E-15 54.2 11.0 73 9-85 5-84 (95)
87 cd05862 Ig1_VEGFR First immuno 99.4 2.1E-11 4.6E-16 55.2 7.9 78 16-95 1-82 (86)
88 cd05845 Ig2_L1-CAM_like Second 99.4 6.6E-12 1.4E-16 57.5 6.0 72 9-88 11-84 (95)
89 KOG3513|consensus 99.3 1.5E-11 3.3E-16 74.7 8.7 84 2-95 332-418 (1051)
90 cd07690 Ig1_CD4 First immunogl 99.3 2.4E-11 5.3E-16 55.7 7.4 77 11-89 2-91 (94)
91 cd05757 Ig2_IL1R_like Second i 99.3 1.6E-11 3.4E-16 56.2 6.7 73 10-92 4-81 (92)
92 cd05717 Ig1_Necl-1-3_like Firs 99.3 3.5E-10 7.5E-15 52.1 10.8 74 9-86 5-85 (95)
93 smart00408 IGc2 Immunoglobulin 99.3 3.2E-11 6.9E-16 51.0 6.9 63 15-87 1-63 (63)
94 smart00410 IG_like Immunoglobu 99.3 5E-10 1.1E-14 49.9 10.9 80 10-95 3-83 (86)
95 smart00409 IG Immunoglobulin. 99.3 5E-10 1.1E-14 49.9 10.9 80 10-95 3-83 (86)
96 cd05860 Ig4_SCFR Fourth immuno 99.3 6.3E-10 1.4E-14 51.4 11.0 86 9-95 11-97 (101)
97 cd05871 Ig_Semaphorin_classIII 99.3 1.7E-10 3.8E-15 52.7 8.8 75 10-94 5-85 (91)
98 KOG3513|consensus 99.3 3.1E-11 6.6E-16 73.5 7.4 77 10-95 435-511 (1051)
99 cd05727 Ig2_Contactin-2-like S 99.3 2.8E-11 6.2E-16 55.5 5.7 72 9-87 11-84 (96)
100 PF00047 ig: Immunoglobulin do 99.3 7.6E-11 1.6E-15 50.4 6.7 63 16-82 1-64 (64)
101 cd05881 Ig1_Necl-2 First (N-te 99.3 2.2E-09 4.8E-14 49.3 11.1 74 8-85 4-84 (95)
102 PF13927 Ig_3: Immunoglobulin 99.2 2.9E-10 6.3E-15 49.8 7.8 74 1-84 1-75 (75)
103 cd05753 Ig2_FcgammaR_like Seco 99.2 2E-10 4.3E-15 51.7 6.9 64 11-88 9-73 (83)
104 cd04983 IgV_TCR_alpha_like Imm 99.2 1.2E-09 2.6E-14 51.4 9.4 79 5-86 2-93 (109)
105 PHA02785 IL-beta-binding prote 99.2 1.4E-09 3E-14 60.1 10.8 82 9-90 228-319 (326)
106 PF13895 Ig_2: Immunoglobulin 99.2 1.8E-09 3.9E-14 47.8 8.6 69 1-87 1-69 (80)
107 KOG4194|consensus 99.1 2.3E-10 4.9E-15 66.9 6.2 87 2-95 613-701 (873)
108 PHA02826 IL-1 receptor-like pr 99.1 1.3E-09 2.9E-14 57.4 8.3 68 10-85 138-210 (227)
109 cd05899 IgV_TCR_beta Immunoglo 99.1 1.9E-09 4.2E-14 50.8 8.2 76 5-85 2-94 (110)
110 cd04980 IgV_L_kappa Immunoglob 99.1 3.2E-09 7E-14 49.8 8.1 77 4-85 3-93 (106)
111 cd05896 Ig1_IL1RAPL-1_like Fir 99.1 5.7E-09 1.2E-13 48.4 7.9 80 9-95 8-102 (104)
112 cd05897 Ig2_IL1R2_like Second 99.1 1.1E-09 2.4E-14 50.3 5.4 71 11-88 5-80 (95)
113 cd05751 Ig1_LILRB1_like First 99.0 5.5E-09 1.2E-13 47.7 7.4 74 1-85 2-75 (91)
114 cd05714 Ig_CSPGs_LP Immunoglob 99.0 2.3E-08 5E-13 46.9 9.4 81 15-95 1-100 (106)
115 cd04982 IgV_TCR_gamma Immunogl 99.0 9.6E-09 2.1E-13 48.9 8.1 76 6-84 3-98 (116)
116 KOG4221|consensus 99.0 6E-09 1.3E-13 64.7 8.5 70 8-85 244-313 (1381)
117 cd05872 Ig_Sema4B_like Immunog 99.0 2.6E-09 5.5E-14 48.1 4.8 65 9-84 4-68 (85)
118 cd04984 IgV_L_lambda Immunoglo 99.0 1.7E-08 3.7E-13 46.7 7.3 69 12-85 2-85 (98)
119 cd05900 Ig_Aggrecan Immunoglob 98.9 8.4E-08 1.8E-12 45.5 9.1 77 15-93 1-104 (112)
120 cd05713 Ig_MOG_like Immunoglob 98.9 1.2E-07 2.5E-12 44.0 9.2 34 62-95 64-97 (100)
121 cd05877 Ig_LP_like Immunoglobu 98.9 1.6E-07 3.4E-12 44.0 9.6 77 15-95 1-100 (106)
122 cd07706 IgV_TCR_delta Immunogl 98.9 7.2E-08 1.6E-12 45.9 8.4 78 4-84 2-93 (116)
123 cd05878 Ig_Aggrecan_like Immun 98.9 1.8E-07 3.9E-12 44.2 9.6 80 15-94 1-103 (110)
124 PHA02826 IL-1 receptor-like pr 98.9 2.2E-08 4.8E-13 52.9 7.1 86 9-94 30-129 (227)
125 PF07686 V-set: Immunoglobulin 98.9 2.4E-07 5.2E-12 43.6 9.8 79 4-85 4-101 (114)
126 cd05759 Ig2_KIRREL3-like Secon 98.9 1.6E-07 3.4E-12 42.0 8.7 66 19-86 2-69 (82)
127 cd00099 IgV Immunoglobulin var 98.8 1.1E-07 2.4E-12 44.3 8.1 73 12-87 2-91 (105)
128 cd05879 Ig_P0 Immunoglobulin ( 98.8 1.9E-07 4.2E-12 44.5 8.8 77 8-87 5-104 (116)
129 cd05741 Ig_CEACAM_D1_like Firs 98.8 7.8E-08 1.7E-12 43.9 7.3 80 16-95 1-90 (92)
130 cd05715 Ig_P0-like Immunoglobu 98.8 3.3E-07 7.1E-12 43.7 9.6 80 8-87 5-104 (116)
131 cd05880 Ig_EVA1 Immunoglobulin 98.8 1.5E-07 3.2E-12 44.9 8.3 80 8-87 5-103 (115)
132 cd05885 Ig2_Necl-4 Second immu 98.8 6.3E-08 1.4E-12 43.2 6.4 66 19-88 2-68 (80)
133 cd05775 Ig_SLAM-CD84_like_N N- 98.8 1.4E-07 2.9E-12 43.7 7.4 80 14-93 2-92 (97)
134 PHA02785 IL-beta-binding prote 98.8 7.4E-08 1.6E-12 53.4 7.5 71 12-93 37-112 (326)
135 cd05716 Ig_pIgR Immunoglobulin 98.8 4.2E-07 9.1E-12 42.0 8.5 73 11-86 2-87 (98)
136 cd05711 Ig_FcalphaRI Immunoglo 98.7 7.6E-07 1.6E-11 41.0 8.8 75 1-83 1-75 (94)
137 cd05718 Ig1_PVR_like First imm 98.7 9.8E-07 2.1E-11 40.7 9.3 77 17-95 1-95 (98)
138 KOG4194|consensus 98.7 4.7E-08 1E-12 57.6 5.8 83 2-92 707-790 (873)
139 cd05712 Ig_Siglec_N Immunoglob 98.7 1.3E-06 2.8E-11 41.9 9.1 76 7-85 5-102 (119)
140 cd07700 IgV_CD8_beta Immunoglo 98.7 5.8E-07 1.3E-11 42.3 7.8 71 12-85 2-94 (107)
141 cd05902 Ig_Neurocan Immunoglob 98.7 1.9E-06 4.1E-11 40.8 9.4 33 62-94 71-103 (110)
142 cd05901 Ig_Versican Immunoglob 98.7 2.5E-06 5.5E-11 40.7 9.6 34 62-95 78-111 (117)
143 cd00098 IgC Immunoglobulin Con 98.7 4.9E-07 1.1E-11 41.4 7.1 74 14-87 11-86 (95)
144 cd05846 Ig1_MRC-OX-2_like Firs 98.7 1.1E-06 2.3E-11 40.6 8.1 78 16-93 1-92 (97)
145 cd05720 Ig_CD8_alpha Immunoglo 98.7 6.2E-07 1.3E-11 42.0 7.3 72 13-84 3-90 (104)
146 cd05774 Ig_CEACAM_D1 First imm 98.6 1.3E-06 2.7E-11 41.0 7.7 75 12-86 9-93 (105)
147 cd05888 Ig1_Nectin-4_like Frst 98.6 3.2E-06 6.9E-11 39.3 9.0 34 62-95 63-97 (100)
148 cd05761 Ig2_Necl-1-4_like Seco 98.6 1.8E-06 3.9E-11 38.7 7.3 68 19-88 2-70 (82)
149 PF08205 C2-set_2: CD80-like C 98.6 4.4E-06 9.6E-11 37.9 10.2 85 2-88 1-86 (89)
150 cd04981 IgV_H Immunoglobulin ( 98.6 3.1E-06 6.8E-11 40.5 8.3 73 9-84 5-97 (117)
151 cd05771 IgC_Tapasin_R Tapasin- 98.6 5.3E-06 1.1E-10 40.8 9.3 85 2-86 39-131 (139)
152 KOG4222|consensus 98.5 3.3E-07 7.1E-12 57.2 5.4 74 9-90 139-214 (1281)
153 cd07694 Ig2_CD4 Second immunog 98.5 3.9E-06 8.5E-11 37.9 7.5 62 12-85 10-73 (88)
154 cd07698 IgC_MHC_I_alpha3 Class 98.5 7.7E-06 1.7E-10 37.5 9.0 68 16-86 14-83 (93)
155 cd00096 Ig Immunoglobulin doma 98.5 5.3E-06 1.1E-10 35.1 7.8 66 19-86 1-66 (74)
156 cd05883 Ig2_Necl-2 Second immu 98.5 5.6E-06 1.2E-10 37.1 7.5 66 19-87 2-68 (82)
157 PHA02987 Ig domain OX-2-like p 98.5 9.8E-06 2.1E-10 41.5 8.9 72 9-84 23-106 (189)
158 KOG4222|consensus 98.5 2.5E-07 5.4E-12 57.6 3.7 81 2-91 226-306 (1281)
159 cd07705 Ig2_Necl-1 Second immu 98.4 1.5E-05 3.3E-10 35.8 8.3 67 19-87 2-70 (83)
160 KOG4221|consensus 98.4 1.2E-07 2.6E-12 59.3 1.2 83 2-93 329-411 (1381)
161 cd05755 Ig2_ICAM-1_like Second 98.4 2E-05 4.4E-10 36.7 8.7 79 6-88 6-87 (100)
162 cd05884 Ig2_Necl-3 Second immu 98.4 1.4E-05 3.1E-10 35.9 7.4 67 19-86 2-69 (83)
163 cd05887 Ig1_Nectin-3_like Firs 98.3 3.2E-05 7E-10 35.8 9.3 34 62-95 59-93 (96)
164 smart00407 IGc1 Immunoglobulin 98.3 2.8E-05 6E-10 34.3 7.7 67 19-85 2-70 (75)
165 cd05886 Ig1_Nectin-1_like Firs 98.3 3.8E-05 8.2E-10 35.7 9.6 33 63-95 63-96 (99)
166 cd05889 Ig1_DNAM-1_like First 98.2 4.7E-05 1E-09 35.2 8.2 34 62-95 59-93 (96)
167 cd05847 IgC_CH2_IgE CH2 domain 98.2 5.3E-05 1.1E-09 34.9 7.7 74 15-88 13-88 (94)
168 cd07699 IgC_L Immunoglobulin C 98.2 2.5E-05 5.5E-10 36.4 6.6 85 2-86 2-89 (100)
169 PHA03376 BARF1; Provisional 98.2 0.00011 2.4E-09 37.9 8.8 78 10-87 20-111 (221)
170 smart00406 IGv Immunoglobulin 98.1 4.3E-05 9.4E-10 33.7 6.0 20 62-81 61-80 (81)
171 cd05767 IgC_MHC_II_alpha Class 98.0 0.00017 3.7E-09 33.2 9.0 70 14-86 13-84 (94)
172 cd05769 IgC_TCR_beta T cell re 98.0 0.00026 5.6E-09 33.9 7.6 82 7-88 9-94 (115)
173 cd05770 IgC_beta2m Class I maj 98.0 0.00023 4.9E-09 32.8 8.8 68 14-85 13-82 (93)
174 cd07696 IgC_CH3 CH3 domain (th 97.9 0.00029 6.4E-09 32.6 7.7 80 7-87 5-87 (96)
175 cd05768 IgC_CH4 CH4 domain (fo 97.8 0.00031 6.8E-09 32.9 6.3 74 13-86 13-91 (102)
176 cd05719 Ig2_PVR_like Second im 97.7 0.00068 1.5E-08 31.3 8.6 68 15-86 14-82 (95)
177 cd07697 IgC_TCR_gamma T cell r 97.7 0.00069 1.5E-08 31.4 8.4 69 14-85 14-84 (96)
178 PF07654 C1-set: Immunoglobuli 97.7 0.00066 1.4E-08 30.4 8.7 71 14-87 6-78 (83)
179 cd05772 IgC_SIRP Signal-regula 97.7 0.0011 2.4E-08 31.6 9.1 72 13-86 18-92 (111)
180 cd05771 IgC_Tapasin_R Tapasin- 97.6 0.00022 4.7E-09 35.1 4.1 32 64-95 2-33 (139)
181 PHA02633 hypothetical protein; 97.5 0.0005 1.1E-08 29.1 4.2 30 63-92 18-47 (63)
182 cd04985 IgC_CH1 CH1 domain (fi 97.5 0.0018 3.9E-08 29.9 7.8 70 15-86 15-87 (95)
183 cd05721 IgV_CTLA-4 Immunoglobu 97.4 0.0028 6E-08 30.4 8.1 71 10-83 7-94 (115)
184 cd05766 IgC_MHC_II_beta Class 97.4 0.0027 5.8E-08 29.3 9.7 70 14-86 12-83 (94)
185 cd04986 IgC_CH2 CH2 domain (se 97.4 0.0032 6.9E-08 29.4 6.1 77 7-86 10-89 (99)
186 cd07703 Ig2_Nectin-2_like Seco 97.3 0.0032 6.8E-08 29.2 7.9 68 15-86 14-82 (95)
187 cd07691 Ig_CD3_gamma_delta Imm 96.9 0.0089 1.9E-07 25.9 4.9 49 16-84 6-54 (69)
188 PF07354 Sp38: Zona-pellucida- 96.5 0.0075 1.6E-07 32.9 3.9 49 29-85 11-59 (271)
189 KOG3515|consensus 96.5 0.0026 5.6E-08 39.4 2.4 65 12-87 18-83 (741)
190 cd07692 Ig_CD3_epsilon Immunog 96.1 0.028 6.1E-07 24.2 3.8 53 13-85 4-56 (65)
191 PF08204 V-set_CD47: CD47 immu 95.7 0.036 7.8E-07 27.3 3.8 82 12-94 23-116 (130)
192 PHA02982 hypothetical protein; 95.7 0.14 3E-06 27.5 6.2 77 11-87 34-124 (251)
193 PHA03052 Hypothetical protein; 95.5 0.053 1.1E-06 23.5 3.5 34 9-42 5-41 (69)
194 cd07704 Ig2_Nectin-3-4_like Se 95.3 0.12 2.7E-06 24.1 8.7 73 9-85 9-83 (97)
195 PF11465 Receptor_2B4: Natural 94.8 0.19 4E-06 23.9 4.5 29 62-90 70-98 (108)
196 KOG4597|consensus 94.4 0.1 2.2E-06 31.2 3.7 79 11-93 206-287 (560)
197 KOG1480|consensus 93.2 0.021 4.6E-07 35.8 -0.3 70 11-89 139-209 (909)
198 cd07689 Ig2_VCAM-1 Second immu 93.0 0.49 1.1E-05 22.3 6.2 27 13-39 12-41 (99)
199 PHA02914 Immunoglobulin-like d 92.3 1.5 3.2E-05 26.2 6.1 76 9-85 272-368 (500)
200 KOG3515|consensus 92.0 0.97 2.1E-05 29.0 5.5 73 12-84 108-184 (741)
201 PHA03042 CD47-like protein; Pr 90.7 1.9 4.1E-05 24.3 7.6 63 13-88 28-95 (286)
202 PF06328 Lep_receptor_Ig: Ig-l 89.6 1.2 2.7E-05 20.5 7.3 65 10-82 12-81 (89)
203 PHA02865 MHC-like TNF binding 89.5 2.8 6.1E-05 24.4 7.5 21 18-38 216-238 (338)
204 PF05790 C2-set: Immunoglobuli 79.4 4.6 9.9E-05 18.2 7.6 23 64-86 44-67 (80)
205 PHA03269 envelope glycoprotein 79.4 13 0.00027 23.2 7.3 73 12-84 338-415 (566)
206 PHA03273 envelope glycoprotein 72.3 21 0.00044 22.2 7.9 73 12-84 246-323 (486)
207 PHA03270 envelope glycoprotein 71.2 21 0.00046 21.9 7.7 73 12-84 230-306 (466)
208 PHA03240 envelope glycoprotein 67.7 7.9 0.00017 21.2 2.3 30 58-87 100-129 (258)
209 PF10572 UPF0556: Uncharacteri 64.4 19 0.00041 18.7 4.0 22 72-93 69-90 (158)
210 cd05890 Ig2_Nectin-1_like Seco 63.1 16 0.00034 17.4 5.9 71 19-94 23-95 (98)
211 PF01688 Herpes_gI: Alphaherpe 60.3 22 0.00048 18.6 3.1 23 62-84 123-145 (161)
212 PF13220 DUF4028: Protein of u 56.7 14 0.00031 15.3 1.7 15 73-87 8-22 (65)
213 PHA03112 IL-18 binding protein 52.6 32 0.00069 17.6 4.1 77 13-89 35-122 (141)
214 PF15096 G6B: G6B family 46.8 23 0.00049 19.1 1.9 17 11-27 6-22 (224)
215 PHA03282 envelope glycoprotein 42.4 59 0.0013 20.5 3.3 23 61-83 122-144 (540)
216 PHA03290 envelope glycoprotein 38.5 68 0.0015 19.2 3.0 23 62-84 128-150 (357)
217 PHA03286 envelope glycoprotein 36.0 1.1E+02 0.0025 19.3 4.2 31 63-93 127-157 (492)
218 PHA03289 envelope glycoprotein 35.4 82 0.0018 18.8 3.0 23 62-84 121-143 (352)
219 PF03921 ICAM_N: Intercellular 34.9 56 0.0012 15.3 8.8 23 4-26 6-28 (91)
220 PHA03292 envelope glycoprotein 33.4 88 0.0019 19.2 3.0 23 62-84 127-149 (413)
221 PF01034 Syndecan: Syndecan do 29.9 15 0.00033 15.9 -0.2 17 64-80 30-46 (64)
222 PF06832 BiPBP_C: Penicillin-B 28.9 68 0.0015 14.5 9.0 24 18-42 31-54 (89)
223 PF02440 Adeno_E3_CR1: Adenovi 27.3 67 0.0015 13.9 2.4 20 14-37 3-22 (63)
224 PF06214 SLAM: Signaling lymph 26.7 94 0.002 15.4 2.2 21 63-83 103-123 (126)
225 PHA03271 envelope glycoprotein 26.2 1.8E+02 0.0038 18.4 8.3 74 12-85 256-334 (490)
226 COG5475 Uncharacterized small 25.9 69 0.0015 13.6 1.8 15 76-90 29-43 (60)
227 PHA03283 envelope glycoprotein 25.6 2E+02 0.0043 18.7 4.3 25 63-87 134-158 (542)
228 PHA03189 UL14 tegument protein 24.2 1.7E+02 0.0037 17.5 8.2 20 8-27 59-78 (348)
229 PF11327 DUF3129: Protein of u 23.7 1.3E+02 0.0029 16.2 3.3 24 62-85 92-115 (184)
230 PF11781 RRN7: RNA polymerase 20.5 55 0.0012 12.2 0.6 8 74-81 22-29 (36)
231 PF02480 Herpes_gE: Alphaherpe 20.5 1.4E+02 0.003 18.7 2.4 21 64-84 270-290 (439)
No 1
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.82 E-value=3.1e-18 Score=78.44 Aligned_cols=89 Identities=25% Similarity=0.416 Sum_probs=71.3
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+. ...++.+.... ....|.|.+++..|.|.|.|
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~-~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C 76 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIV-SSQRHQITSTE-----YKSTFEISKVQMSDEGNYTV 76 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECC-CCCcEEEEEcC-----CeeEEEECCCCcccCEeEEE
Confidence 4677777788899999999999999999999999999865442 33344433211 23689999999999999999
Q ss_pred EEecCCCceEEEEEe
Q psy4613 81 IAKNSLGEVESSIRL 95 (96)
Q Consensus 81 ~~~~~~g~~~~~~~l 95 (96)
.+.|..|.....+.|
T Consensus 77 ~a~N~~G~~~~~~~l 91 (92)
T cd05747 77 VVENSEGKQEAQFTL 91 (92)
T ss_pred EEEcCCCCEeEEEEe
Confidence 999999998888766
No 2
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.81 E-value=1.2e-18 Score=79.22 Aligned_cols=86 Identities=27% Similarity=0.344 Sum_probs=69.2
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+. ...+. .. ....|.|.++...|.|.|.|
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~-~~~~~--~~-------~~~~L~I~~v~~~D~G~Y~C 70 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMP-ATAEI--SM-------SGAVLKIFNIQPEDEGTYEC 70 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCC-CCCEE--ec-------CCCEEEECcCChhhCEEEEE
Confidence 5778888888889999999999999999999999999865432 11111 11 12468999999999999999
Q ss_pred EEecCCCceEEEEEeC
Q psy4613 81 IAKNSLGEVESSIRLY 96 (96)
Q Consensus 81 ~~~~~~g~~~~~~~l~ 96 (96)
.+.|..|.......|+
T Consensus 71 ~A~N~~G~~~~~~~l~ 86 (88)
T cd05851 71 EAENIKGKDKHQARVY 86 (88)
T ss_pred EEEcCCCceEEEEEEE
Confidence 9999999988887763
No 3
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.81 E-value=5.7e-18 Score=78.32 Aligned_cols=88 Identities=20% Similarity=0.274 Sum_probs=70.9
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+..+.+..|+.+.|.|.+.|.|.+.+.|++++..+. ...++.+.... ..+.|.|..+...|.|.|.|.
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~-~~~~~~~~~~~-----~~s~L~I~~~~~~D~G~Ytc~ 74 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQ-EGEGIKIENTE-----NSSKLTITEGQQEHCGCYTLE 74 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEec-CCCcEEEEecC-----CeeEEEECCCChhhCEEEEEE
Confidence 556677788889999999999999999999999999876553 33444433211 246799999999999999999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.|..|...+.+.|
T Consensus 75 a~N~~G~~~~~~~l 88 (98)
T cd05762 75 VENKLGSRQAQVNL 88 (98)
T ss_pred EEcCCCceeEEEEE
Confidence 99999998877765
No 4
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.79 E-value=2.8e-17 Score=74.39 Aligned_cols=82 Identities=20% Similarity=0.271 Sum_probs=64.6
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
..+.+..|+.+.|.|.+.|.|.|.+.|++++..+.....++...... ....|.|..+...|+|.|.|.+.|..|.
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~-----~~~~L~I~~~~~~D~G~Y~c~a~N~~G~ 77 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYK-----DLSSFVIEGAEREDEGVYTITVTNPVGE 77 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcC-----CeEEEEECCCccCcCEEEEEEEEeCCCc
Confidence 35678899999999999999999999999876553222344333211 2467999999999999999999999999
Q ss_pred eEEEEEe
Q psy4613 89 VESSIRL 95 (96)
Q Consensus 89 ~~~~~~l 95 (96)
....+.|
T Consensus 78 ~~~~~~l 84 (86)
T cd05894 78 DHASLFV 84 (86)
T ss_pred EEEEEEE
Confidence 8877765
No 5
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.77 E-value=1.3e-16 Score=72.69 Aligned_cols=88 Identities=38% Similarity=0.576 Sum_probs=72.7
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++...... ....|.|.++...|.|.|.|.
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~ 74 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLT-SSQRYQIESDG-----GSSSLTIKNVTREDAGTYTCV 74 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEE-SSSSEEEEEET-----TEEEEEESSESGGGSEEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCccccccccccee-eeeeeeeeccc-----ceeEEccCCCChhhCEEEEEE
Confidence 667777888999999999999999999999999999965554 34555544322 457899999999999999999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.+..|.....+.|
T Consensus 75 ~~n~~g~~~~~~~l 88 (90)
T PF07679_consen 75 ASNSSGEATASVNL 88 (90)
T ss_dssp EEETTEEEEEEEEE
T ss_pred EEECCCEEEEEEEE
Confidence 99999988877765
No 6
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.77 E-value=1.4e-16 Score=73.58 Aligned_cols=90 Identities=24% Similarity=0.369 Sum_probs=66.9
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecc----cceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS----ERYEVESISRSIFDFKMRLTIKKITKYDLG 76 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g 76 (96)
+|.|...+....+..|+.+.|.|.+.|.|.|.+.|++++..+.... .++.... ....+.|.|.+++..|.|
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~-----~~~~~~L~I~~v~~~D~G 76 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRS-----HARVSSLTLKYIQYTDAG 76 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEc-----CccEEEEEEecCccCcCE
Confidence 4777776666666678999999999999999999998754432110 1111111 012367999999999999
Q ss_pred eEEEEEecCCCceEEEEEe
Q psy4613 77 SYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 77 ~y~c~~~~~~g~~~~~~~l 95 (96)
.|.|.+.|..|.....+.|
T Consensus 77 ~Y~C~A~N~~G~~~~~~~l 95 (97)
T cd05869 77 EYLCTASNTIGQDSQSMYL 95 (97)
T ss_pred EEEEEEecCCCCeeEEEEE
Confidence 9999999999998888776
No 7
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.76 E-value=4.1e-17 Score=75.14 Aligned_cols=88 Identities=30% Similarity=0.523 Sum_probs=65.4
Q ss_pred CCeEEecC--ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613 1 HPVIHVPN--QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78 (96)
Q Consensus 1 ~p~~~~~~--~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 78 (96)
+|.+.... ....+..|+.+.|.|.+.|.|.|.+.|++++..+.....++.... ....|.|.++...|.|.|
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y 73 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNE-------DGSEMTILDVDKLDEAEY 73 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeC-------CCCEEEECCCChhhCEEE
Confidence 45555544 334678999999999999999999999998655432212222211 225699999999999999
Q ss_pred EEEEecCCCceEEEEEe
Q psy4613 79 KCIAKNSLGEVESSIRL 95 (96)
Q Consensus 79 ~c~~~~~~g~~~~~~~l 95 (96)
.|.+.|..|.....+.|
T Consensus 74 ~C~a~N~~G~~~~~~~L 90 (95)
T cd05730 74 TCIAENKAGEQEAEIHL 90 (95)
T ss_pred EEEEEcCCCeEEEEEEE
Confidence 99999999988777655
No 8
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.76 E-value=1.2e-16 Score=72.60 Aligned_cols=85 Identities=29% Similarity=0.343 Sum_probs=66.2
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++.... ...... . ....|.|.+++..|.|.|.|
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~-~~~~~~--~-------~~~~L~i~~v~~~D~G~Y~C 70 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMP-SSAEIS--M-------SGAVLKIPNIQFEDEGTYEC 70 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCC-CccEEE--E-------eCCEEEECCCCcccCEEEEE
Confidence 3555666677778899999999999999999999999765432 111111 1 23679999999999999999
Q ss_pred EEecCCCceEEEEEe
Q psy4613 81 IAKNSLGEVESSIRL 95 (96)
Q Consensus 81 ~~~~~~g~~~~~~~l 95 (96)
.+.|..|.......|
T Consensus 71 ~a~N~~G~~~~~~~l 85 (88)
T cd04968 71 EAENIKGKDTHQGRI 85 (88)
T ss_pred EEEECCCcEEEEEEE
Confidence 999999988777665
No 9
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.75 E-value=3.6e-16 Score=71.59 Aligned_cols=85 Identities=22% Similarity=0.320 Sum_probs=65.5
Q ss_pred ecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 6 VPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 6 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
..+..+.+..|+.+.|.|.+.+.|.|.+.|++++..+. ...++...... . ....|.|.++...|+|.|.|.+.|.
T Consensus 6 ~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~-~~~~~~~~~~~--~--~~~~L~I~~v~~~D~G~Y~C~a~N~ 80 (92)
T cd05737 6 GLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALA-LSDHYNVKVEQ--G--KYASLTIKGVSSEDSGKYGIVVKNK 80 (92)
T ss_pred cCCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECc-cCCCEEEEEcC--C--CEEEEEEccCChhhCEEEEEEEEEC
Confidence 34556778999999999999999999999999865543 33344332210 0 1357999999999999999999999
Q ss_pred CCceEEEEEe
Q psy4613 86 LGEVESSIRL 95 (96)
Q Consensus 86 ~g~~~~~~~l 95 (96)
.|.....+.|
T Consensus 81 ~G~~~~~~~v 90 (92)
T cd05737 81 YGGETVDVTV 90 (92)
T ss_pred CCcceEEEEE
Confidence 9988877765
No 10
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.74 E-value=1.5e-16 Score=70.19 Aligned_cols=73 Identities=29% Similarity=0.441 Sum_probs=56.2
Q ss_pred EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
+.|.|.+.|.|.|.+.|++++..+.....++.+.... . ...+|.|.++...|.|.|.|.+.|..|.......|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~--~--g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L 73 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDN--S--GRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARL 73 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcC--C--CcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEE
Confidence 4689999999999999999876554333444433211 0 12479999999999999999999999998887766
No 11
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.74 E-value=5.6e-16 Score=70.71 Aligned_cols=84 Identities=17% Similarity=0.199 Sum_probs=64.2
Q ss_pred ecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 6 VPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 6 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.++....+..|+.+.|.|.+.|.|.|.+.|++++..+.. ........ ......|.|..++..|.|.|.|.+.|.
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~-~~~~~~~~-----~~~~~~L~I~~v~~~D~g~Y~C~A~N~ 78 (90)
T cd04972 5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQ-TRTDTLET-----TVDIYNLQLSNITSETQTTVTCTAENP 78 (90)
T ss_pred cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccC-CccEEEEe-----cCCEEEEEEecCCcccCEEEEEEEECC
Confidence 345566689999999999999999999999998765431 11111111 013467999999999999999999999
Q ss_pred CCceEEEEEe
Q psy4613 86 LGEVESSIRL 95 (96)
Q Consensus 86 ~g~~~~~~~l 95 (96)
.|.......|
T Consensus 79 ~G~~~~~~~L 88 (90)
T cd04972 79 VGQANVSVQV 88 (90)
T ss_pred CCceeEEEEE
Confidence 9998887765
No 12
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.74 E-value=1.3e-16 Score=70.75 Aligned_cols=73 Identities=18% Similarity=0.303 Sum_probs=56.0
Q ss_pred CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
|+.+.|.|.+.+.|.|.+.|++++..+........... ....|.|.+++..|.|.|.|.+.|..|.....+.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV-------SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHV 73 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe-------eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEE
Confidence 67899999999999999999998655432111111111 23579999999999999999999999998877765
No 13
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.73 E-value=1.1e-15 Score=70.81 Aligned_cols=89 Identities=26% Similarity=0.334 Sum_probs=64.7
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc--eeEe----cccceEEEEeccccceEEEEEEEccCCCCC
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--DMVI----SSERYEVESISRSIFDFKMRLTIKKITKYD 74 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 74 (96)
+|.+..+ ....+..|+.+.|.|.+.+.|.|.+.|++... .+.. ...++.+... .....|.|.+++..|
T Consensus 2 ~p~i~~~-~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~-----~~~~~L~I~~v~~~D 75 (98)
T cd05870 2 QPHIIQL-KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQ-----HGESSLHIKDVKLSD 75 (98)
T ss_pred CCEEEee-ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeec-----CCeeEEEEeeCCcCC
Confidence 4666553 45678899999999999999999999998532 2210 0122222110 023579999999999
Q ss_pred CeeEEEEEecCCCceEEEEEe
Q psy4613 75 LGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 75 ~g~y~c~~~~~~g~~~~~~~l 95 (96)
.|.|.|.+.|..|....++.|
T Consensus 76 ~G~Y~C~A~N~~G~~~~~~~l 96 (98)
T cd05870 76 SGRYDCEAASRIGGHQKSMYL 96 (98)
T ss_pred CEEEEEEEeccCCcceeEEEE
Confidence 999999999999988877765
No 14
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.73 E-value=7.8e-17 Score=71.07 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=57.4
Q ss_pred CCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEE
Q psy4613 15 IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIR 94 (96)
Q Consensus 15 ~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~ 94 (96)
+|..+.|.|.+.+.|.|.+.|++++..+. ...+.... ....|.|.+++..|.|.|.|.+.|..|.....+.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~-~~~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 71 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLS-VDRRHLVL--------SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQ 71 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECC-CCCCeEEc--------cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEE
Confidence 47899999999999999999999865543 22222221 1357999999999999999999999999888776
Q ss_pred e
Q psy4613 95 L 95 (96)
Q Consensus 95 l 95 (96)
|
T Consensus 72 L 72 (74)
T cd05745 72 L 72 (74)
T ss_pred E
Confidence 6
No 15
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.73 E-value=1.3e-16 Score=70.06 Aligned_cols=71 Identities=34% Similarity=0.490 Sum_probs=57.2
Q ss_pred CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
|+.+.|.|.+.+.|.|.+.|++++..+. ...++.+.. ...|.|.+++..|.|.|.|.+.|..|.......|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~-~~~r~~~~~--------~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 71 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLV-NNSRISIWD--------DGSLEILNITKLDEGSYTCFAENNRGKANSTGVL 71 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecc-cCCCEEEcC--------CCEEEECcCChhHCEEEEEEEECCCCceeEEEEE
Confidence 6789999999999999999999865432 344544321 2579999999999999999999999998877765
No 16
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.73 E-value=9.2e-16 Score=71.20 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=63.8
Q ss_pred ceeeecCCCcEEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 9 QLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
..+.+..|+++.|.|.+.+ .|.|.+.|++++..+. ......+.............|.|..++..|+|.|.|.+.|..|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLT-NKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCC-CCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 4577899999999999999 8999999999876553 2222211111000111347899999999999999999999999
Q ss_pred ceEEEEEe
Q psy4613 88 EVESSIRL 95 (96)
Q Consensus 88 ~~~~~~~l 95 (96)
.....+.|
T Consensus 90 ~~~~t~~L 97 (101)
T cd04975 90 SKSLTFEL 97 (101)
T ss_pred cEEEEEEE
Confidence 88877765
No 17
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.73 E-value=1.2e-15 Score=69.77 Aligned_cols=80 Identities=25% Similarity=0.420 Sum_probs=60.6
Q ss_pred EecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
..++....+..|+.+.|.|.+.|.|. .+.|++.+........++...... ....|.|..+...|.|.|.|.+.|
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g-----~~~~L~I~~v~~~D~G~Y~C~A~N 77 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEG-----VRSRLTIYNANIEDAGIYRCQATD 77 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCC-----CeeEEEEecCChHHCEEEEEEEEc
Confidence 44556677899999999999999887 899998644443344454433211 235799999999999999999999
Q ss_pred CCCceE
Q psy4613 85 SLGEVE 90 (96)
Q Consensus 85 ~~g~~~ 90 (96)
..|...
T Consensus 78 ~~G~~~ 83 (92)
T cd05866 78 AKGQTQ 83 (92)
T ss_pred CCCcEE
Confidence 998753
No 18
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.73 E-value=2.7e-16 Score=71.05 Aligned_cols=80 Identities=28% Similarity=0.446 Sum_probs=63.9
Q ss_pred ecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 6 VPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 6 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
..+....+..|+.+.|.|.+.+.|.|.+.|++++..+. ...+... ....|.|.++...|.|.|.|.+.|.
T Consensus 4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~-~~~~~~~---------~~~~L~i~~~~~~D~G~Y~C~a~N~ 73 (85)
T cd05728 4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLA-SENRIEV---------EAGDLRITKLSLSDSGMYQCVAENK 73 (85)
T ss_pred ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECC-CCCeEEE---------eCCEEEEeeCCHHHCEEEEEEEECC
Confidence 34556778899999999999999999999999866543 2223322 2356899999999999999999999
Q ss_pred CCceEEEEEe
Q psy4613 86 LGEVESSIRL 95 (96)
Q Consensus 86 ~g~~~~~~~l 95 (96)
.|.....+.|
T Consensus 74 ~G~~~~~~~l 83 (85)
T cd05728 74 HGTIYASAEL 83 (85)
T ss_pred CCeEEEEEEE
Confidence 9998877765
No 19
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.72 E-value=1.7e-15 Score=69.79 Aligned_cols=87 Identities=21% Similarity=0.307 Sum_probs=61.5
Q ss_pred EecCceeeecCCCcEEEEEEeeeccc-ceeEEee-ccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVR-DQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA 82 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 82 (96)
...+....+..|+.+.|.|.+.+.|. |.+.|++ ++..+.....++...... . ..++|.|..++..|.|.|.|.+
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~--~--~~~~L~I~~v~~~D~G~YtC~A 79 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRND--D--YSSTLTIYNANIDDAGIYKCVV 79 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCC--C--CceEEEEeccChhhCEEEEEEE
Confidence 34455556889999999999999985 6999998 443332212233222110 0 2368999999999999999999
Q ss_pred ecCC-CceEEEEEe
Q psy4613 83 KNSL-GEVESSIRL 95 (96)
Q Consensus 83 ~~~~-g~~~~~~~l 95 (96)
.|.. |...+++.|
T Consensus 80 ~N~~~g~~~~s~~l 93 (96)
T cd05865 80 SNEDEGESEATVNV 93 (96)
T ss_pred EcCCCCcEEEEEEE
Confidence 9996 777766554
No 20
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.72 E-value=1.2e-15 Score=69.31 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=59.2
Q ss_pred CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
|+.+.|.|.+.+.|.+.+.|.+++..+.....++.+.... ......+.|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~-~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKE-VGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEec-CCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence 6789999999999999999999865442222344433211 111245789999999999999999999999998877765
No 21
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.71 E-value=1.2e-15 Score=70.39 Aligned_cols=89 Identities=27% Similarity=0.340 Sum_probs=65.2
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEec----ccceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS----SERYEVESISRSIFDFKMRLTIKKITKYDLG 76 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g 76 (96)
+|.+.... ...+..|+.+.|.|.+.+.|.|.+.|++.+..+... ..++.... ......|.|.++...|.|
T Consensus 2 ~P~i~~~~-~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G 75 (96)
T cd05732 2 QPKITYLE-NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRG-----HARVSSLTLKDVQLTDAG 75 (96)
T ss_pred CccceecC-ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeC-----CccEEEEEECcCCcCcCE
Confidence 46665433 456788999999999999999999999876333211 11121111 012468999999999999
Q ss_pred eEEEEEecCCCceEEEEEe
Q psy4613 77 SYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 77 ~y~c~~~~~~g~~~~~~~l 95 (96)
.|.|.+.|..|....++.|
T Consensus 76 ~Y~C~a~N~~G~~~~s~~l 94 (96)
T cd05732 76 RYDCEASNRIGGDQQSMYL 94 (96)
T ss_pred EeEEEEEeCCCCcEEEEEE
Confidence 9999999999998887766
No 22
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.71 E-value=5.1e-16 Score=72.11 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=62.3
Q ss_pred eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEE-EeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVE-SISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
...+..+..+.|.|.+.+.|.|.+.|++++..+. ...+.... ..........+.|.|..++..|+|.|.|.+.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~-~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLI-ENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECc-CCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 4567889999999999999999999999976654 22211111 000001112468999999999999999999999998
Q ss_pred eEEEEEe
Q psy4613 89 VESSIRL 95 (96)
Q Consensus 89 ~~~~~~l 95 (96)
...++.|
T Consensus 91 ~~~t~~l 97 (101)
T cd05859 91 KSYTFAL 97 (101)
T ss_pred EEEEEEE
Confidence 8777665
No 23
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.71 E-value=6e-16 Score=68.32 Aligned_cols=73 Identities=30% Similarity=0.459 Sum_probs=55.4
Q ss_pred EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
+.|.|.+.|.|.|.+.|++++..+.....++...... . ....|.|..++..|.|.|.|.+.|..|....+..|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~-~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L 73 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDN-C---GYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARL 73 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcC-C---CEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEE
Confidence 4689999999999999999876554323344332211 0 12368999999999999999999999998887765
No 24
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.71 E-value=1.6e-15 Score=71.36 Aligned_cols=94 Identities=26% Similarity=0.379 Sum_probs=64.6
Q ss_pred CCeEEecCc--eeee--cCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCC-CCCC
Q psy4613 1 HPVIHVPNQ--LVGA--PIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKIT-KYDL 75 (96)
Q Consensus 1 ~p~~~~~~~--~~~~--~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~ 75 (96)
+|.+..++. .+.. ..|..+.|.|.+.+.|.+.+.|++++..+.....++...... ......+.|.|.++. ..|.
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~-~~~~~~s~L~I~~v~~~~D~ 82 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEH-TGTVHTSILTIINVSAALDY 82 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeec-cCccceeEEEECcCCccCCC
Confidence 466655554 2222 356889999999999999999999875543223344322211 111124679999987 5899
Q ss_pred eeEEEEEecCCCceEEEEEe
Q psy4613 76 GSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 76 g~y~c~~~~~~g~~~~~~~l 95 (96)
|.|.|.+.|..|.....+.|
T Consensus 83 G~Y~C~A~N~~G~~~~~i~L 102 (109)
T cd05773 83 ALFTCTAHNSLGEDSLDIQL 102 (109)
T ss_pred EEEEEEEEeCCccCcEEEEE
Confidence 99999999999988777655
No 25
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.71 E-value=1.1e-15 Score=67.51 Aligned_cols=73 Identities=29% Similarity=0.441 Sum_probs=55.4
Q ss_pred EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
+.|.|.+.|.|.|.+.|++++..+.....++...... . ....|.|..++..|.|.|.|.+.|..|.......|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~-~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDN-C---GRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARL 73 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcC-C---CeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEE
Confidence 4689999999999999999875553223344332211 0 12469999999999999999999999998888766
No 26
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.70 E-value=7e-16 Score=68.32 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=55.4
Q ss_pred CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
|+.+.|.|.+.|.|.|.+.|++++..+........... ....+.|..++..|.|.|.|.+.|..|.....+.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~-------~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 73 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV-------DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFV 73 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe-------cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEE
Confidence 67899999999999999999998755432111111111 12468889999999999999999999998887765
No 27
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.70 E-value=4.6e-15 Score=68.67 Aligned_cols=93 Identities=27% Similarity=0.383 Sum_probs=67.6
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCC-Cee
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYD-LGS 77 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~g~ 77 (96)
||.+.. +....+..|..+.|.|.+.+.|.| .+.|.+++..+... ..++.+...... ....+.|.|..++..| .|.
T Consensus 2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~-~~~~s~L~I~~v~~~d~~G~ 79 (98)
T cd05758 2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSP-GGVLSTLTISNTQESDFQTS 79 (98)
T ss_pred CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCC-CceEEEEEECCcccccccee
Confidence 455644 445668999999999999999999 59999886554322 234544432111 2234679999999855 899
Q ss_pred EEEEEecCCCceEEEEEe
Q psy4613 78 YKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 78 y~c~~~~~~g~~~~~~~l 95 (96)
|.|.+.|..|.....+.|
T Consensus 80 Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 80 YNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEEcCCCcccEEEEe
Confidence 999999999998887766
No 28
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.70 E-value=1.8e-15 Score=68.33 Aligned_cols=80 Identities=18% Similarity=0.433 Sum_probs=60.1
Q ss_pred eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
+.+..|+.+.|.|.+.+.|.|.+.|++++..+.. ..+....... .....|.|..+...|.|.|.|.+.|..|...
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~-~~~~~~~~~~----~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~ 78 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQ-EHRIGGYKVR----NQHWSLIMESVVPSDKGNYTCVVENEYGSIN 78 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCC-CCceeeeEEe----CCceEEEEccCCcccCEEEEEEEEeCCCEEE
Confidence 4578899999999999999999999998765532 1111100000 0235688999999999999999999999988
Q ss_pred EEEEe
Q psy4613 91 SSIRL 95 (96)
Q Consensus 91 ~~~~l 95 (96)
..+.|
T Consensus 79 ~~~~l 83 (85)
T cd05857 79 HTYHL 83 (85)
T ss_pred EEEEE
Confidence 87765
No 29
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.69 E-value=2.8e-15 Score=68.65 Aligned_cols=85 Identities=26% Similarity=0.316 Sum_probs=65.1
Q ss_pred ecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 6 VPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 6 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
..+..+.+..|+.+.|.|.+.+.|.|.+.|++++..+. ...++...... . ....|.|..++..|+|.|.|.+.|.
T Consensus 6 ~~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~-~~~~~~~~~~~--~--~~~~L~I~~~~~~D~G~Y~C~a~N~ 80 (92)
T cd05891 6 GLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIE-LSEHYSVKLEQ--G--KYASLTIKGVTSEDSGKYSINVKNK 80 (92)
T ss_pred cCCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECC-CCCCEEEEEcC--C--CEEEEEECCCChhhCEEEEEEEEeC
Confidence 45567788999999999999999999999999876543 22333322111 1 1246999999999999999999999
Q ss_pred CCceEEEEEe
Q psy4613 86 LGEVESSIRL 95 (96)
Q Consensus 86 ~g~~~~~~~l 95 (96)
.|.....+.|
T Consensus 81 ~G~~~~~~~v 90 (92)
T cd05891 81 YGGETVDVTV 90 (92)
T ss_pred CCceeeEEEE
Confidence 9998877654
No 30
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.69 E-value=4.1e-15 Score=65.56 Aligned_cols=71 Identities=28% Similarity=0.429 Sum_probs=56.0
Q ss_pred EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
+.|.|.+.|.|.|.+.|++++..+. ...+..+.... ....|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus 2 ~~l~c~~~G~P~p~v~W~k~g~~l~-~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSKDGKPLK-LSGRVQIETTA-----SSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINV 72 (74)
T ss_pred EEEEeeEeeeCCCeEEEEECCEEcC-CCCeEEEEECC-----CeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEE
Confidence 6789999999999999999876542 23343332211 24789999999999999999999999998887765
No 31
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.69 E-value=2e-15 Score=66.03 Aligned_cols=69 Identities=32% Similarity=0.629 Sum_probs=54.1
Q ss_pred cEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 18 ~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
.+.|.|.+.|.|.|.+.|++++..+. ...++.... ...+.|.+++..|.|.|.|.+.|..|.......|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~-~~~~~~~~~--------~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 69 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVI-PSDYFKIVK--------EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQL 69 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECC-CCCCEEEEe--------cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEE
Confidence 37899999999999999999876543 233333322 2357788999999999999999999998888766
No 32
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.68 E-value=1.8e-15 Score=69.08 Aligned_cols=81 Identities=27% Similarity=0.445 Sum_probs=61.2
Q ss_pred CCeEE--ecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613 1 HPVIH--VPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78 (96)
Q Consensus 1 ~p~~~--~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 78 (96)
+|.+. ..+..+.+..|+.+.|.|.+.+. .|.+.|++++..+. ..+..... ....|.|.+++..|.|.|
T Consensus 1 ~p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~--~~~~~~~~-------~~~~L~I~~v~~~D~G~Y 70 (91)
T cd05740 1 KPVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLV--PPRLQLSN-------DNRTLTFNNVTRSDTGHY 70 (91)
T ss_pred CCEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECC--CCCEEEeC-------CCCEEEECcCChhhCEEE
Confidence 36663 23455678899999999999998 99999999865543 23332221 225799999999999999
Q ss_pred EEEEecCCCceEE
Q psy4613 79 KCIAKNSLGEVES 91 (96)
Q Consensus 79 ~c~~~~~~g~~~~ 91 (96)
.|.+.|..|....
T Consensus 71 ~C~a~N~~G~~~S 83 (91)
T cd05740 71 QCEASNEVSNMTS 83 (91)
T ss_pred EEEEEcCCCCEEe
Confidence 9999999997544
No 33
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.68 E-value=1.5e-15 Score=67.29 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=55.8
Q ss_pred CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
|+.+.|.|.+.+.|.|.+.|++++..+........... ....|.|.+++..|.|.|.|.+.|..|...+.+.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 73 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRV-------DGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFV 73 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEc-------cCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEE
Confidence 67899999999999999999988655432211111111 23678999999999999999999999988877765
No 34
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.68 E-value=2.8e-15 Score=67.21 Aligned_cols=78 Identities=24% Similarity=0.525 Sum_probs=60.0
Q ss_pred eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~ 89 (96)
.+.+..|+.+.|.|.+.+.|.|.+.|++++..+... ....... ....|.|.++...|.|.|.|.+.|..|..
T Consensus 3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~-~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 74 (82)
T cd05856 3 VIARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPT-EIGESRK-------KKWTLSLKNLKPEDSGKYTCHVSNRAGEI 74 (82)
T ss_pred ceeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCC-ccceecC-------ceEEEEEccCChhhCEEEEEEEEcCCccE
Confidence 345778999999999999999999999986554321 1111110 23679999999999999999999999988
Q ss_pred EEEEEe
Q psy4613 90 ESSIRL 95 (96)
Q Consensus 90 ~~~~~l 95 (96)
...+.|
T Consensus 75 ~~~~~v 80 (82)
T cd05856 75 NATYKV 80 (82)
T ss_pred EEEEEE
Confidence 877765
No 35
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.68 E-value=1.8e-15 Score=66.58 Aligned_cols=71 Identities=32% Similarity=0.465 Sum_probs=57.0
Q ss_pred CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
|+.+.|.|.+.+.|.|.+.|++++..+. ...++... ....|.|.++...|.|.|.|.+.|..|....++.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~-~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 71 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLT-NSSRICIW--------PDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSL 71 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcc-cCCCEEEC--------CCCeEEEccCChhHCEEEEEEEECCCCceEEEEEE
Confidence 6789999999999999999999865543 33344322 12469999999999999999999999998887765
No 36
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.66 E-value=4.2e-15 Score=66.16 Aligned_cols=72 Identities=28% Similarity=0.394 Sum_probs=54.5
Q ss_pred CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEE
Q psy4613 16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSI 93 (96)
Q Consensus 16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~ 93 (96)
|+.+.|.|.+.+.|.|.+.|++++..+. ...++...... ....|.|.+++..|.|.|.|.+.|..|......
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 72 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVP-DSARVSITSEG-----GYGTLTIRDVKESDQGAYTCEAINTRGMVFGIP 72 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECC-CCCCEEEEECC-----CEEEEEECCCChHHCEEEEEEEEecCCEEEecc
Confidence 6789999999999999999998765442 22333322211 246799999999999999999999999765543
No 37
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.66 E-value=1.5e-15 Score=66.08 Aligned_cols=68 Identities=25% Similarity=0.528 Sum_probs=53.7
Q ss_pred EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
+.|.|.+.+.|.|.+.|++++..+. ...++... ....|.|.++...|.|.|.|.+.|..|....++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~-~~~~~~~~--------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVT-ESGKFHIS--------PEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECC-CCCCEEEC--------CCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 4689999999999999999865442 23333322 13579999999999999999999999998887765
No 38
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.66 E-value=5e-15 Score=67.89 Aligned_cols=82 Identities=28% Similarity=0.458 Sum_probs=58.1
Q ss_pred CCeEEecCceeeecC---CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCC-CCCCe
Q psy4613 1 HPVIHVPNQLVGAPI---DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKIT-KYDLG 76 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~---g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g 76 (96)
+|.+...+....... +..+.|.|.+.|.|.|.+.|++++..+.....++.. ....|.|..+. ..|.|
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~---------~~g~L~I~~~~~~~D~G 71 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM---------VGGNLVINNPDKYKDAG 71 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE---------ECCEEEECcCCcCCCCE
Confidence 355655555554444 347999999999999999999987654322233322 12568888875 68999
Q ss_pred eEEEEEecCCCceEE
Q psy4613 77 SYKCIAKNSLGEVES 91 (96)
Q Consensus 77 ~y~c~~~~~~g~~~~ 91 (96)
.|.|.+.|..|....
T Consensus 72 ~Y~C~A~N~~G~~~s 86 (93)
T cd05849 72 RYVCIVSNIYGKVRS 86 (93)
T ss_pred EEEEEEEeCcceEEE
Confidence 999999999997644
No 39
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.66 E-value=7.4e-15 Score=65.22 Aligned_cols=75 Identities=21% Similarity=0.272 Sum_probs=53.3
Q ss_pred EEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 20 TLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 20 ~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
.|.|.+.|.|.|.+.|++++..+. ...+................|.|..+...|.|.|.|.+.|..|.....+.+
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~ 76 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILN-ESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSA 76 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECC-CCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEe
Confidence 367899999999999999976653 222211110000000124679999999999999999999999998877765
No 40
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.66 E-value=1.4e-14 Score=67.09 Aligned_cols=91 Identities=24% Similarity=0.322 Sum_probs=60.9
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecc--cceEEEEeccccceEEEEEEE--ccCCCCCCe
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS--ERYEVESISRSIFDFKMRLTI--KKITKYDLG 76 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i--~~~~~~d~g 76 (96)
+|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+.... ......... +. ....+.+ ..+...|.|
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~-~~--~~~~~~i~~~~~~~~D~G 77 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLP-SG--SLFFLRVVHGRKGRSDEG 77 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEec-CC--cEEEEEeeccCCCcCcCE
Confidence 5788888888889999999999999999999999999875543210 011110000 01 1112222 234689999
Q ss_pred eEEEEEecCCCc-eEEEEE
Q psy4613 77 SYKCIAKNSLGE-VESSIR 94 (96)
Q Consensus 77 ~y~c~~~~~~g~-~~~~~~ 94 (96)
.|.|.+.|..|. ......
T Consensus 78 ~Y~C~a~N~~G~~~s~~~~ 96 (100)
T cd07693 78 VYVCVAHNSLGEAVSRNAS 96 (100)
T ss_pred EEEEEEEccccceecceEE
Confidence 999999999997 444433
No 41
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.66 E-value=2.8e-15 Score=64.69 Aligned_cols=61 Identities=30% Similarity=0.383 Sum_probs=48.9
Q ss_pred EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEE
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSI 93 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~ 93 (96)
+.|.|.+.+.|.|.+.|++++..+.. +. ....|.|.++...|.|.|.|.+.|..|......
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~---~~-----------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~ 61 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISG---KH-----------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRI 61 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcc---cC-----------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEE
Confidence 36899999999999999998755421 10 235799999999999999999999999655444
No 42
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.65 E-value=2.8e-15 Score=66.55 Aligned_cols=65 Identities=32% Similarity=0.547 Sum_probs=49.3
Q ss_pred EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
+.|.|.+.+.|.|.+.|++++..+.....++.... ....|.|.++...|.|.|.|.+.|..|...
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 65 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS-------KERTLTLRSAGPDDSGLYYCCAHNAFGSVC 65 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC-------CCCEEEEeeCCcccCEEEEEEEEeCCCeEe
Confidence 47899999999999999998765432222222221 225789999999999999999999999653
No 43
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.65 E-value=7.6e-15 Score=64.69 Aligned_cols=72 Identities=31% Similarity=0.483 Sum_probs=55.2
Q ss_pred CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
|+.+.|.|.+.+.|.|.+.|.+.+........+.... ....|.|..+...|.|.|.|.+.|..|.....+.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~--------~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVY--------DNGTLDILITTVKDTGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEe--------cCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence 6789999999999999999997544443332332221 12568889999999999999999999988877765
No 44
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.64 E-value=2.4e-15 Score=65.83 Aligned_cols=68 Identities=26% Similarity=0.439 Sum_probs=52.6
Q ss_pred EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
+.|.|.+.|.|.|.+.|++++..+.. .+..... ....|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~--~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSP--NRTKKLN-------NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTV 68 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCC--CceeEEc-------CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEE
Confidence 46899999999999999998654431 1111111 23679999999999999999999999998877665
No 45
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.64 E-value=3.6e-14 Score=65.22 Aligned_cols=82 Identities=26% Similarity=0.431 Sum_probs=57.4
Q ss_pred CeEEecCceeeec---CCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCC-CCCCee
Q psy4613 2 PVIHVPNQLVGAP---IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKIT-KYDLGS 77 (96)
Q Consensus 2 p~~~~~~~~~~~~---~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~ 77 (96)
|.+...+..+.+. .|+.+.|.|.+.|.|.|.+.|++++..+.. ........ ....|.|..+. ..|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~-~~~~~~~~-------~~g~L~i~~~~~~~D~G~ 73 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDT-ESDYRYSL-------IDGNLIISNPSEVKDSGR 73 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECcc-CCCceEEe-------eCCeEEEccCCccCcCEE
Confidence 5555555554443 468999999999999999999998765532 12222211 12467788774 689999
Q ss_pred EEEEEecCCCceEE
Q psy4613 78 YKCIAKNSLGEVES 91 (96)
Q Consensus 78 y~c~~~~~~g~~~~ 91 (96)
|.|.+.|..|....
T Consensus 74 Y~C~A~N~~G~~~S 87 (94)
T cd05848 74 YQCLATNSIGSILS 87 (94)
T ss_pred EEEEEEcCCCeEEe
Confidence 99999999997643
No 46
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.63 E-value=1.6e-14 Score=62.83 Aligned_cols=68 Identities=22% Similarity=0.469 Sum_probs=51.3
Q ss_pred CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
|+.+.|.|.+.|.|.|.+.|++++..+. ...+... ....|.|.++. |.|.|.|.+.|..|....+..|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~-~~~~~~~---------~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELT-KEDEMPV---------GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECC-Cccceec---------CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 5789999999999999999999875542 2222211 12457777764 7899999999999998877765
No 47
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.63 E-value=7e-15 Score=67.09 Aligned_cols=72 Identities=26% Similarity=0.524 Sum_probs=55.0
Q ss_pred CCcEEEEEEeeecccceeEEeeccceeEe-------cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 16 DTDVTLECYVEAYPKSINYWVRDQGDMVI-------SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
|+.+.|.|.+.+.|.|.+.|++++..... ...++... ....|.|.+++..|+|.|.|.+.|..|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 72 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS--------QTGDLTITNVQRSDVGYYICQTLNVAGS 72 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC--------CCCeEEEeeCChhhCEEEEEEEEcCCCc
Confidence 67899999999999999999988654321 11222221 1246999999999999999999999998
Q ss_pred eEEEEEe
Q psy4613 89 VESSIRL 95 (96)
Q Consensus 89 ~~~~~~l 95 (96)
....+.|
T Consensus 73 ~~~~~~l 79 (90)
T cd05726 73 ILTKAYL 79 (90)
T ss_pred eEEEEEE
Confidence 8777655
No 48
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.63 E-value=1.1e-13 Score=63.39 Aligned_cols=86 Identities=22% Similarity=0.364 Sum_probs=59.7
Q ss_pred EecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
...+....+..|+.+.|.|.+.+.| +.+.|++.+........+...... ......|.|.+++..|.|.|.|.+.|
T Consensus 4 ~v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~A~N 78 (92)
T cd04977 4 DIVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQN----DDVRSTLTIYNANIEDAGIYKCVATD 78 (92)
T ss_pred EEecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeC----CCCEEEEEEecCCcccCEEEEEEEEc
Confidence 4445557789999999999999986 489999743433322233322211 01346899999999999999999999
Q ss_pred CCCc-eEEEEEe
Q psy4613 85 SLGE-VESSIRL 95 (96)
Q Consensus 85 ~~g~-~~~~~~l 95 (96)
..|. ...+..|
T Consensus 79 ~~g~~~~~sv~l 90 (92)
T cd04977 79 AKGTESEATVNL 90 (92)
T ss_pred CCCCcceeEEEE
Confidence 8654 4555544
No 49
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.63 E-value=7.9e-14 Score=64.08 Aligned_cols=81 Identities=30% Similarity=0.466 Sum_probs=58.5
Q ss_pred CeEEecCceeeecCC---CcEEEEEEeeecccceeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCC-CCCCe
Q psy4613 2 PVIHVPNQLVGAPID---TDVTLECYVEAYPKSINYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKIT-KYDLG 76 (96)
Q Consensus 2 p~~~~~~~~~~~~~g---~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g 76 (96)
|.+...+.......| ..+.|.|.+.+.|.|.+.|++++..+... ..++.. ....|.|.++. ..|.|
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~---------~~g~L~I~~~~~~~D~G 72 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL---------VAGNLVINNPQKARDAG 72 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE---------ECCeEEEccCCccCcCE
Confidence 566666666655555 57999999999999999999987655322 122222 12467787755 58999
Q ss_pred eEEEEEecCCCceEE
Q psy4613 77 SYKCIAKNSLGEVES 91 (96)
Q Consensus 77 ~y~c~~~~~~g~~~~ 91 (96)
.|.|.+.|..|....
T Consensus 73 ~Y~C~A~N~~G~~~s 87 (94)
T cd05850 73 SYQCLAINRCGTVVS 87 (94)
T ss_pred EEEEEEEcCcCcEEE
Confidence 999999999997654
No 50
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.63 E-value=6.6e-15 Score=65.05 Aligned_cols=70 Identities=26% Similarity=0.416 Sum_probs=51.5
Q ss_pred EEEEEEeeecccceeEEeeccceeEe--cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMVI--SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
+.|.|.+.|.|.|.+.|++++..... ...++.... ....|.|.+++..|.|.|.|.+.|..|.......|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l 72 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMP-------EDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATL 72 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEec-------CCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEE
Confidence 36899999999999999998653211 112222211 12468899999999999999999999987776654
No 51
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.62 E-value=4.5e-14 Score=63.17 Aligned_cols=75 Identities=20% Similarity=0.269 Sum_probs=53.5
Q ss_pred EEEEEeeecccceeEEeeccceeEecccceEEEEecc--ccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 20 TLECYVEAYPKSINYWVRDQGDMVISSERYEVESISR--SIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 20 ~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
.|.|.+.|.|.|.+.|++++..+. ...+........ ........|.|.++...|.|.|.|.+.|..|.....+.+
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~-~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~ 78 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLN-ESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISA 78 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECc-CCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEe
Confidence 368999999999999999876654 222221111000 011134679999999999999999999999998877765
No 52
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.62 E-value=2.7e-14 Score=63.70 Aligned_cols=76 Identities=17% Similarity=0.290 Sum_probs=57.8
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
....+..|+.+.|.|.+.+. .+.+.|++++..+. ...++.+. ...|.|..+...|+|.|.|.+.|..|.
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~-~~~~~~~~---------~~~L~I~~~~~~DsG~Y~C~a~n~~g~ 70 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLG-ENNRTRIT---------GEEVQIKDAVPRDSGLYACVTSSPSGS 70 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCC-CCceEEEe---------CCEEEECCCChhhCEEEEEEEeCCCCc
Confidence 34567899999999999885 56899999875553 22333332 246899999999999999999999887
Q ss_pred eEEEEEe
Q psy4613 89 VESSIRL 95 (96)
Q Consensus 89 ~~~~~~l 95 (96)
....+.|
T Consensus 71 ~~~~~~v 77 (79)
T cd04973 71 DTTYFSV 77 (79)
T ss_pred ccEEEEE
Confidence 6665543
No 53
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.62 E-value=1.4e-14 Score=63.04 Aligned_cols=67 Identities=33% Similarity=0.584 Sum_probs=52.8
Q ss_pred EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
+.|.|.+.+.|.|.+.|++++..+. ..++... ....|.|.+++..|.|.|.|.+.|..|.......|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~--~~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 67 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELP--KGRAEIL--------DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASL 67 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCC--CCcEEEe--------eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEE
Confidence 4689999999999999999865442 2333332 12569999999999999999999999988877665
No 54
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.62 E-value=1.9e-14 Score=65.09 Aligned_cols=75 Identities=28% Similarity=0.462 Sum_probs=57.5
Q ss_pred CceeeecCCCcEEEEEEe-eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 8 NQLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
+....+..|+.+.|.|.+ .+.|.|.+.|++++..+.....+..... ...|.|.++...|.|.|.|.+.|..
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~--------~~~L~I~~~~~~D~G~Y~C~a~N~~ 74 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD--------DGNLLIAEARKSDEGTYKCVATNMV 74 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc--------CCEEEEeECCcccCEEEEEEEEecc
Confidence 445677899999999997 6888999999998655432223332211 2569999999999999999999998
Q ss_pred CceE
Q psy4613 87 GEVE 90 (96)
Q Consensus 87 g~~~ 90 (96)
|...
T Consensus 75 G~~~ 78 (86)
T cd05724 75 GERE 78 (86)
T ss_pred Ccee
Confidence 8754
No 55
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.62 E-value=1.7e-13 Score=63.16 Aligned_cols=93 Identities=29% Similarity=0.406 Sum_probs=67.2
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCC-Cee
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYD-LGS 77 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~g~ 77 (96)
||.+ .......+..|+.+.|.|.+.+.|.| .+.|...+..+... ..++.+.... ...+..+.|.|.++...| .|.
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~-~~~g~~S~L~I~~~~~~d~~g~ 79 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTS-TGSGVLSTLTINNIMEADFQTH 79 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEc-cCCCcEEEEEECCCccccCCcE
Confidence 4555 56667778899999999999888887 56787664433221 3455554421 222356889999998767 689
Q ss_pred EEEEEecCCCceEEEEEe
Q psy4613 78 YKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 78 y~c~~~~~~g~~~~~~~l 95 (96)
|.|.+.|.+|.....+.|
T Consensus 80 Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 80 YNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEeCCccceEEEEe
Confidence 999999999998887776
No 56
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.61 E-value=6.6e-15 Score=64.34 Aligned_cols=68 Identities=32% Similarity=0.667 Sum_probs=52.1
Q ss_pred EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
+.|.|.+.+.|.|.+.|++++..+. ..+..... ....|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~--~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELP--ADRTKFEN-------FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISV 68 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECC--CCceeEec-------CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence 4689999999999999999865432 11211111 23579999999999999999999999988777765
No 57
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.61 E-value=1.2e-14 Score=63.54 Aligned_cols=65 Identities=28% Similarity=0.433 Sum_probs=49.9
Q ss_pred EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEE
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSI 93 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~ 93 (96)
+.|.|.+.+.|.|.+.|++++..+. ...+.. . ....|.|.++...|+|.|.|.+.|..|.....+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~-~~~~~~--~-------~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~ 65 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLIS-EKNRTK--K-------SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRL 65 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECC-CCCEEE--c-------CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEE
Confidence 3689999999999999999865543 222221 1 235799999999999999999999998765544
No 58
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.61 E-value=2.6e-14 Score=64.56 Aligned_cols=79 Identities=28% Similarity=0.429 Sum_probs=62.6
Q ss_pred ecCceeeecCCCcEEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 6 VPNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 6 ~~~~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
.++....+..|+.++|.|.+.+ .+.+.+.|++++..+. . +. .. ....|.|.+++..|.|.|.|.+.|
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~-~--~~--~~-------~~~~L~I~~v~~~DsG~Y~C~a~n 73 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLP-S--RA--MD-------FNGILTIRNVQLSDAGTYVCTGSN 73 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCC-C--cc--cc-------cCCEEEECCCCHHHCEEEEEEEec
Confidence 4556677899999999999875 6778999998864421 1 11 11 235799999999999999999999
Q ss_pred CCCceEEEEEeC
Q psy4613 85 SLGEVESSIRLY 96 (96)
Q Consensus 85 ~~g~~~~~~~l~ 96 (96)
..|.......||
T Consensus 74 ~~g~~~~~~~l~ 85 (85)
T cd05754 74 MLDTDEATATLY 85 (85)
T ss_pred cCCeEeEEEEEC
Confidence 999999999887
No 59
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.59 E-value=4.4e-14 Score=64.87 Aligned_cols=79 Identities=24% Similarity=0.261 Sum_probs=59.1
Q ss_pred eeeecCCCcEEEEEEeee-----cccceeEEeeccceeEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613 10 LVGAPIDTDVTLECYVEA-----YPKSINYWVRDQGDMVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK 83 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~-----~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 83 (96)
...+..|+.+.|.|.+.+ .|.+.+.|++++....... ...+... ....|.|..+...|+|.|.|.+.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-------~~~~L~I~~~~~~DsG~Y~C~~~ 80 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-------QKDLLWFLPAALEDSGLYTCVVR 80 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee-------cCCeEEEccCCcccCeEEEEEEc
Confidence 455778999999999988 6888999999875432111 1111111 12578999999999999999999
Q ss_pred cCCCceEEEEEe
Q psy4613 84 NSLGEVESSIRL 95 (96)
Q Consensus 84 ~~~g~~~~~~~l 95 (96)
|..|.....+.|
T Consensus 81 N~~g~~~~~~~L 92 (94)
T cd05756 81 NSTYCMKVSISL 92 (94)
T ss_pred CCCccEEEEEEE
Confidence 999988877655
No 60
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.58 E-value=2.2e-14 Score=62.46 Aligned_cols=62 Identities=23% Similarity=0.372 Sum_probs=48.0
Q ss_pred EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEE
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~ 91 (96)
+.|.|.+.|.|.|.+.|++++..+. ... ... ....|.|.++...|.|.|.|.+.|..|....
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~-~~~--~~~--------~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~ 62 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIV-LNH--TFK--------RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQ 62 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECC-CCC--EEc--------cCCEEEECcCCHHHCEEEEEEEEECCCceee
Confidence 3688999999999999999876553 211 111 1246899999999999999999999985543
No 61
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.58 E-value=2.5e-13 Score=61.32 Aligned_cols=75 Identities=20% Similarity=0.338 Sum_probs=54.0
Q ss_pred CcEEEEEEeeecccc--eeEEeeccceeEec--ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEE
Q psy4613 17 TDVTLECYVEAYPKS--INYWVRDQGDMVIS--SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92 (96)
Q Consensus 17 ~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~ 92 (96)
+.+.|.|.+.+.|.| .+.|++++..+... ..++..... . ...+.|.|.+++..|.|.|.|.+.|..|.....
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~--~--~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~ 76 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEV--K--ETIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS 76 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEe--c--ceEeEEEEccCChhhCeEEEEEEecCCCCEEEE
Confidence 368899999999887 57899986554321 112211110 0 023689999999999999999999999998887
Q ss_pred EEe
Q psy4613 93 IRL 95 (96)
Q Consensus 93 ~~l 95 (96)
+.|
T Consensus 77 ~~L 79 (85)
T cd05854 77 ATL 79 (85)
T ss_pred EEE
Confidence 765
No 62
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.58 E-value=8.2e-14 Score=63.56 Aligned_cols=80 Identities=21% Similarity=0.333 Sum_probs=53.5
Q ss_pred CCcEEEEEEeeecccceeEEeecc----ceeEecc-cceEEEEe-c-cccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 16 DTDVTLECYVEAYPKSINYWVRDQ----GDMVISS-ERYEVESI-S-RSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 16 g~~~~l~c~~~~~~~~~~~w~~~~----~~~~~~~-~~~~~~~~-~-~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
|+.+.|.|.+.+.|.|.+.|++.+ ..+.... ........ . .........|.|.+++..|.|.|.|.+.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 578999999999999999999853 1111111 11111110 0 000012346899999999999999999999998
Q ss_pred eEEEEEe
Q psy4613 89 VESSIRL 95 (96)
Q Consensus 89 ~~~~~~l 95 (96)
...+..|
T Consensus 81 ~~~sa~L 87 (90)
T cd04974 81 SHHSAWL 87 (90)
T ss_pred ccCCEEE
Confidence 8776655
No 63
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.58 E-value=1.2e-13 Score=62.99 Aligned_cols=80 Identities=21% Similarity=0.274 Sum_probs=53.7
Q ss_pred CCcEEEEEEeeecccceeEEeecc----ceeEecc-cceEEEEec--cccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 16 DTDVTLECYVEAYPKSINYWVRDQ----GDMVISS-ERYEVESIS--RSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 16 g~~~~l~c~~~~~~~~~~~w~~~~----~~~~~~~-~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
|..+.|.|.+.+.|.|.+.|++.. ..+.... ......... .........|.|.+++..|+|.|.|.+.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 678999999999999999999842 1111110 111111000 000001357999999999999999999999998
Q ss_pred eEEEEEe
Q psy4613 89 VESSIRL 95 (96)
Q Consensus 89 ~~~~~~l 95 (96)
......|
T Consensus 81 ~~~~a~L 87 (90)
T cd05858 81 SHHSAWL 87 (90)
T ss_pred ccceEEE
Confidence 8777665
No 64
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.56 E-value=1.6e-13 Score=61.33 Aligned_cols=76 Identities=20% Similarity=0.357 Sum_probs=53.7
Q ss_pred CCcEEEEEEeeecccceeEEeeccc---eeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEE
Q psy4613 16 DTDVTLECYVEAYPKSINYWVRDQG---DMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92 (96)
Q Consensus 16 g~~~~l~c~~~~~~~~~~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~ 92 (96)
|+.+.|.|.+.+.|.|.+.|++... ............ .. ......|.|.+++..|.|.|.|.+.|..|.....
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~-~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 76 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGN-VV---VTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN 76 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCC-EE---EccccEEEEccCCcccCEEEEEEEecCCceEEEE
Confidence 6789999999999999999998632 111111110000 00 0012579999999999999999999999998887
Q ss_pred EEe
Q psy4613 93 IRL 95 (96)
Q Consensus 93 ~~l 95 (96)
+.|
T Consensus 77 ~~l 79 (81)
T cd05765 77 FPL 79 (81)
T ss_pred EEE
Confidence 765
No 65
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.56 E-value=8.4e-14 Score=61.37 Aligned_cols=63 Identities=27% Similarity=0.388 Sum_probs=48.0
Q ss_pred EEEEEEeeecccceeEEeeccceeEe-cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~ 89 (96)
+.|.|.+.|.|.|.+.|++++..+.. ...++... ....|.|.+++..|.|.|.|.+.|..|..
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~--------~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~ 64 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL--------RSGALQIENSEESDQGKYECVATNSAGTR 64 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc--------CCcEEEECCCChhhCEEEEEEEECCCCce
Confidence 46899999999999999998654431 12233221 12468999999999999999999999974
No 66
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.56 E-value=5.1e-13 Score=60.13 Aligned_cols=80 Identities=21% Similarity=0.451 Sum_probs=59.3
Q ss_pred eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
+.+..|..+.|.|.+.+.|.+.+.|++++..+. .......... ......|.|..+...|.|.|.|.+.+..|...
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~-~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~ 78 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFK-KEHRIGGYKV----RKKKWTLILESVVPSDSGKYTCIVENKYGSIN 78 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECc-ccCceeEEEc----cCcEEEEEEeECCcccCEEEEEEEEECCceEE
Confidence 457789999999999998999999998865443 1111111110 01235688999999999999999999999888
Q ss_pred EEEEe
Q psy4613 91 SSIRL 95 (96)
Q Consensus 91 ~~~~l 95 (96)
.++.|
T Consensus 79 ~~~~l 83 (85)
T cd05729 79 HTYKV 83 (85)
T ss_pred EEEEE
Confidence 77765
No 67
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.55 E-value=1.8e-13 Score=61.79 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=53.1
Q ss_pred CcEEEEEEeeecccc--eeEEeeccceeEeccc--ceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEE
Q psy4613 17 TDVTLECYVEAYPKS--INYWVRDQGDMVISSE--RYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92 (96)
Q Consensus 17 ~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~ 92 (96)
+++.|.|.+.+.|.| .+.|++++..+..... ++...... ...+.|.|.+++..|+|.|.|.+.|..|.....
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 76 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGK----DSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSAS 76 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecc----cccceEEEccCCHHhCeeeEEEEecCCCcEEEE
Confidence 368899999998877 5689988655532221 11111000 023679999999999999999999999987777
Q ss_pred EEe
Q psy4613 93 IRL 95 (96)
Q Consensus 93 ~~l 95 (96)
..|
T Consensus 77 ~~l 79 (85)
T cd04970 77 ADL 79 (85)
T ss_pred EEE
Confidence 655
No 68
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.55 E-value=3.9e-13 Score=60.59 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=53.3
Q ss_pred CCcEEEEEEeeec--ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEE
Q psy4613 16 DTDVTLECYVEAY--PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSI 93 (96)
Q Consensus 16 g~~~~l~c~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~ 93 (96)
|+.+.|.|.+.+. |.+.+.|...+...... ................+.|.|.+++..|+|.|.|.+.|..|....+.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRG-KSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCc-eEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence 6789999999998 78899998765433110 00000000001112457899999999999999999999988766655
Q ss_pred Ee
Q psy4613 94 RL 95 (96)
Q Consensus 94 ~l 95 (96)
.+
T Consensus 80 ~v 81 (84)
T cd05742 80 KV 81 (84)
T ss_pred EE
Confidence 43
No 69
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.54 E-value=3.8e-13 Score=59.30 Aligned_cols=73 Identities=23% Similarity=0.403 Sum_probs=51.9
Q ss_pred EEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEE
Q psy4613 19 VTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIR 94 (96)
Q Consensus 19 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~ 94 (96)
+.|.|.+.+ .|.|.+.|++++..+... .+........ ......|.|..++..|.|.|.|.+.|..|.....+.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~-~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRK-NKPRNIKIRN--KKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeecccc-CCcceEEEEe--cCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 368999999 899999999986554321 2211100000 013467999999999999999999999998776654
No 70
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.53 E-value=1.1e-13 Score=60.46 Aligned_cols=62 Identities=24% Similarity=0.296 Sum_probs=46.3
Q ss_pred EEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 20 TLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 20 ~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
.|.|.+.|.|.|.+.|++++..+.....++. . ....|.|.++...|+|.|.|.+.+......
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~--~-------~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~ 63 (72)
T cd07702 2 RLTPKVKAFPAPEVIWLKDGLPAAEKCSRYH--V-------DGYSLVIKDVTEEDAGIYTILLGIKQYNLF 63 (72)
T ss_pred eEEeeEEEcCCCeEEEEECCEECCCCCcEEE--e-------CCCEEEECcCCHHHCEEEEEEEEccccceE
Confidence 5889999999999999999755432112221 1 124699999999999999999999755443
No 71
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.53 E-value=3.4e-13 Score=60.30 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=53.4
Q ss_pred cCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.+..+.+..|+.+.|.|.+.|.|.| .+.|++++..+.. .... ..+.|.|..+ .|.|.|.|.+.|.
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~---~~~~---------~~s~L~i~~~--~d~g~Y~C~A~N~ 69 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD---PPAP---------SPSVLNVPGL--NETSKFSCEAHNA 69 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC---CCCC---------CCCEEEEccc--cCCeEEEEEEEec
Confidence 3456778999999999999999999 7999998765421 1110 1246777766 4679999999999
Q ss_pred CCceEE
Q psy4613 86 LGEVES 91 (96)
Q Consensus 86 ~g~~~~ 91 (96)
.|....
T Consensus 70 ~G~~~s 75 (81)
T cd05749 70 KGVTTS 75 (81)
T ss_pred cCcEEe
Confidence 996553
No 72
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.53 E-value=2.5e-13 Score=60.09 Aligned_cols=71 Identities=28% Similarity=0.439 Sum_probs=52.2
Q ss_pred EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
+.|.|.+.+.|.|.+.|++++..+. ...+....... ....|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~-~~~~~~~~~~~-----~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 71 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDIT-PKLSKQLTLIA-----NGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSL 71 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECC-CCCCccEEEeC-----CCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEE
Confidence 3688999999999999999865543 22111111111 12468999999999999999999999988777765
No 73
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.52 E-value=9.9e-13 Score=60.54 Aligned_cols=76 Identities=28% Similarity=0.385 Sum_probs=52.6
Q ss_pred cCceeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc-ceEEEEeccccceEEEEEEEccC-----CCCCCeeEEE
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE-RYEVESISRSIFDFKMRLTIKKI-----TKYDLGSYKC 80 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~y~c 80 (96)
.+....+..|+.+.|.|.+.+.|.|.+.|++++..+..... +..... ...+.+..+ ...|.|.|.|
T Consensus 5 ~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~--------~~~l~i~~v~~~~~~~~D~G~Y~C 76 (95)
T cd05722 5 EPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLP--------NGSLLITSVVHSKHNKPDEGFYQC 76 (95)
T ss_pred CCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEcc--------CCeEEEeeeeccCCCCCcCEEEEE
Confidence 34455677899999999999999999999998665432211 111111 123444443 5789999999
Q ss_pred EEecC-CCceE
Q psy4613 81 IAKNS-LGEVE 90 (96)
Q Consensus 81 ~~~~~-~g~~~ 90 (96)
.+.|. .|...
T Consensus 77 ~a~N~~~G~~~ 87 (95)
T cd05722 77 VAQNDSLGSIV 87 (95)
T ss_pred EEECCccCcEE
Confidence 99999 88753
No 74
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.52 E-value=1.8e-12 Score=59.23 Aligned_cols=81 Identities=26% Similarity=0.439 Sum_probs=55.5
Q ss_pred CeEEecCceeeec---CCCcEEEEEEeeecccceeEEeeccceeEe-cccceEEEEeccccceEEEEEEEccCC-CCCCe
Q psy4613 2 PVIHVPNQLVGAP---IDTDVTLECYVEAYPKSINYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTIKKIT-KYDLG 76 (96)
Q Consensus 2 p~~~~~~~~~~~~---~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g 76 (96)
|.+...+...... .++.+.|.|.+.+.|.|.+.|++++..+.. ...++.. ....|.|.++. ..|.|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~---------~~~~L~i~~~~~~~d~G 72 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL---------VGGNLVISNPSKAKDAG 72 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE---------ECCEEEEecCCccCCCE
Confidence 4555555444433 346799999999999999999998654421 1222221 12467787776 48999
Q ss_pred eEEEEEecCCCceEE
Q psy4613 77 SYKCIAKNSLGEVES 91 (96)
Q Consensus 77 ~y~c~~~~~~g~~~~ 91 (96)
.|.|.+.|..|....
T Consensus 73 ~Y~C~a~N~~G~~~S 87 (91)
T cd04967 73 RYQCLASNIVGTVLS 87 (91)
T ss_pred EEEEEEEcCCCEEEe
Confidence 999999999997553
No 75
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.48 E-value=1.1e-12 Score=58.50 Aligned_cols=63 Identities=30% Similarity=0.472 Sum_probs=46.3
Q ss_pred EEEEEEeeecccceeEEeeccceeEe-------cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMVI-------SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~ 89 (96)
+.|.|.+.|.|.|.+.|++.+..... ...+.... ....|.|..+...|.|.|.|.+.|..|..
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 70 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL--------SNGSLLIKHVLEEDSGYYLCKVSNDVGAD 70 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe--------cCCeEEECcCCcccCEEEEEEEEeCCCCC
Confidence 47899999999999999986432110 11122211 23578999999999999999999998865
No 76
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.47 E-value=1.3e-11 Score=55.57 Aligned_cols=69 Identities=23% Similarity=0.312 Sum_probs=47.8
Q ss_pred CCcEEEEEEeeecccceeEEeeccceeEecccc-eEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSER-YEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
|+++.|.|.+.+.+.+.+.|...+......... .... .......+.|.|.+++..|+|.|.|.+.+..+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~ 70 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVK---VPATTLRSTLTFPHATVEDSGTYECAAHESTQ 70 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEe---cCCcEEEEEEEECCCCcCCCEEEEEEEEECcc
Confidence 678999999999889999998764322100000 0000 01112457899999999999999999998755
No 77
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.46 E-value=1.2e-12 Score=58.09 Aligned_cols=66 Identities=21% Similarity=0.392 Sum_probs=45.3
Q ss_pred EEEEEEeeecccceeEEeeccceeEe-cccceEEEEeccccceEEEEEEEccCCC----CCCeeEEEEEecCCCceEE
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTIKKITK----YDLGSYKCIAKNSLGEVES 91 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~c~~~~~~g~~~~ 91 (96)
+.|.|.+.|.|.|.+.|++++..+.. ...+..... ..+.|.|..+.. .|.|.|.|.+.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~-------~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKP-------NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeC-------CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 46899999999999999998765421 122222211 124566666553 3789999999999997654
No 78
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.46 E-value=2.1e-12 Score=57.27 Aligned_cols=67 Identities=24% Similarity=0.376 Sum_probs=46.5
Q ss_pred EEEEEEeeecccceeEEeeccceeE-ecccceEEEEeccccceEEEEEEEccCC----CCCCeeEEEEEecCCCceEEE
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMV-ISSERYEVESISRSIFDFKMRLTIKKIT----KYDLGSYKCIAKNSLGEVESS 92 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~g~y~c~~~~~~g~~~~~ 92 (96)
+.|.|.+.|.|.|.+.|++++..+. ....++.... ....|.|..+. ..|.|.|.|.+.|..|.....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR-------RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeC-------CCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 4689999999999999999875432 1223332211 23567777653 246899999999999976543
No 79
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.46 E-value=2.9e-12 Score=56.94 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=53.0
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeeccc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
|.+...+....+..|+.++|.|.+.+.|. +.+.|++++..+.. ....+.|.++ ..|+|.|.|
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------------~~~~l~i~~~-~~dsG~Y~C 63 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------------TTNSYRIRAA-NNDSGEYRC 63 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------------cCCeEEEeec-ccCCEEeEE
Confidence 56777888888999999999999988775 46899998654411 1245778888 899999999
Q ss_pred EEecC
Q psy4613 81 IAKNS 85 (96)
Q Consensus 81 ~~~~~ 85 (96)
.+.+.
T Consensus 64 ~a~~~ 68 (78)
T cd05752 64 QTQGS 68 (78)
T ss_pred ECCCC
Confidence 99875
No 80
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.46 E-value=2.3e-12 Score=58.24 Aligned_cols=68 Identities=18% Similarity=0.340 Sum_probs=51.9
Q ss_pred CceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
+....+..|+++.|.|.+.+ +.+.+.|.+++..+.....++.. ....|.|.+++..|+|.|.|.+.+.
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~---------~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL---------YRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE---------ECCcEEEeCCCHHHCEEEEEEEEec
Confidence 45567889999999999765 67789999997665432233332 2256899999999999999999875
No 81
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.46 E-value=2.5e-12 Score=57.88 Aligned_cols=75 Identities=19% Similarity=0.321 Sum_probs=53.0
Q ss_pred CcEEEEEEeee--cccceeEEeeccceeEe--cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEE
Q psy4613 17 TDVTLECYVEA--YPKSINYWVRDQGDMVI--SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92 (96)
Q Consensus 17 ~~~~l~c~~~~--~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~ 92 (96)
+++.|.|.+.+ .+.+.+.|++++..+.. ...++...... ...+.|.|.+++..|.|.|.|.+.+..+....+
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~----~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~ 76 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQ----DSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAA 76 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccC----CCCCcEEEecCCHHHCEEEEEEEEcccCceEEE
Confidence 36789999877 44668899999766642 12232221100 012479999999999999999999999988777
Q ss_pred EEe
Q psy4613 93 IRL 95 (96)
Q Consensus 93 ~~l 95 (96)
..|
T Consensus 77 a~L 79 (85)
T cd05853 77 ADL 79 (85)
T ss_pred EEE
Confidence 655
No 82
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.45 E-value=4.2e-12 Score=56.17 Aligned_cols=71 Identities=21% Similarity=0.428 Sum_probs=49.9
Q ss_pred EEEEEEeee-cccceeEEeeccceeEecc-c--ceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEE
Q psy4613 19 VTLECYVEA-YPKSINYWVRDQGDMVISS-E--RYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIR 94 (96)
Q Consensus 19 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~ 94 (96)
+.|.|.+.+ .|.+.+.|++++..+.... . ++..... .....|.|.++...|+|.|.|.+.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~-----~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKK-----KKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeC-----CcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 368999875 5778999999866553211 1 1121110 12367999999999999999999999998776654
No 83
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.44 E-value=2.4e-11 Score=55.92 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=52.7
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-------cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-------SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
....+..|+++.|.|.+.+.+.+.+.|.+.+..+.. ...++...... .....|.|.++...|.|.|.|.
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~~L~I~nV~~~D~G~YtC~ 80 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKST----PTELIISISNVQLSDEGEYTCS 80 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCC----CceEEEEECCCCcccCEEEEEE
Confidence 456788999999999999999999999987654321 11222221110 0236899999999999999999
Q ss_pred Eec
Q psy4613 82 AKN 84 (96)
Q Consensus 82 ~~~ 84 (96)
+..
T Consensus 81 ~~t 83 (95)
T cd05882 81 IFT 83 (95)
T ss_pred EEe
Confidence 876
No 84
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.44 E-value=1.6e-12 Score=57.68 Aligned_cols=66 Identities=23% Similarity=0.399 Sum_probs=45.9
Q ss_pred EEEEEEeeecccceeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCC----CCCeeEEEEEecCCCceEE
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITK----YDLGSYKCIAKNSLGEVES 91 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~c~~~~~~g~~~~ 91 (96)
+.|.|.+.|.|.|.+.|++++..+... ..+..... ....|.|..+.. .|.|.|.|.+.|..|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~-------~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKP-------DSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeC-------CCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 468999999999999999986554321 12222111 135677777643 6899999999999997543
No 85
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.43 E-value=2.9e-12 Score=58.32 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=54.7
Q ss_pred CceeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc-ceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE-RYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
+..+.+..|+.+.|.|.+.+ +.+.+.|++++..+..... ...... ....|.|.+++..|.|.|.|.+.+..
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~~~~ 74 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV-------TEDGLLIRSVSPADAGVYTCQSVEHG 74 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE-------cCCCEEEccCCHHHCEEEEEEEecCc
Confidence 45567889999999999877 7789999998655432110 111111 12458899999999999999998654
Q ss_pred C-ceEEEEEe
Q psy4613 87 G-EVESSIRL 95 (96)
Q Consensus 87 g-~~~~~~~l 95 (96)
+ ....+..|
T Consensus 75 ~~~~~~~~~l 84 (89)
T cd04979 75 FKQTLATYSL 84 (89)
T ss_pred cceeEeEEEE
Confidence 3 34444433
No 86
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.40 E-value=8.1e-11 Score=54.19 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=52.4
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-------cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-------SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
+.+.+..|+++.|.|.+.+.+.+.+.|++.+...+. ...++...... .....|.|.+++.+|+|.|.|.
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~----~~~~sL~I~~v~~~DsG~Y~C~ 80 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRAS----WHELSISISDVSLSDEGQYTCS 80 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECC----CCcEEEEECcCCcccCEEEEEE
Confidence 457789999999999999999999999864332221 12233221110 1236799999999999999999
Q ss_pred EecC
Q psy4613 82 AKNS 85 (96)
Q Consensus 82 ~~~~ 85 (96)
+...
T Consensus 81 ~~t~ 84 (95)
T cd07701 81 LFTM 84 (95)
T ss_pred eEee
Confidence 8864
No 87
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.36 E-value=2.1e-11 Score=55.16 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=51.1
Q ss_pred CCcEEEEEEeeeccc--ceeEEeeccceeEe--cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEE
Q psy4613 16 DTDVTLECYVEAYPK--SINYWVRDQGDMVI--SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91 (96)
Q Consensus 16 g~~~~l~c~~~~~~~--~~~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~ 91 (96)
|+.+.|.|.+.+.+. ..+.|...+..... ....... .........+.|.|.+++..|.|.|.|.+.|..|....
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~--~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~ 78 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRR--SLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN 78 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccc--cccccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence 678999999987654 46789776543211 0010000 00011124578999999999999999999998887666
Q ss_pred EEEe
Q psy4613 92 SIRL 95 (96)
Q Consensus 92 ~~~l 95 (96)
.+.|
T Consensus 79 ~t~~ 82 (86)
T cd05862 79 STIV 82 (86)
T ss_pred cEEE
Confidence 5544
No 88
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.36 E-value=6.6e-12 Score=57.51 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=55.4
Q ss_pred ceeeecCCCcEEEEEE-eeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCe-eEEEEEecCC
Q psy4613 9 QLVGAPIDTDVTLECY-VEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG-SYKCIAKNSL 86 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~c~~~~~~ 86 (96)
+.+.+.+|+.+.|.|. ..+.|.|.+.|..+....+....+.... ..+.|.|.++...|.| .|.|.+.+..
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~--------~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG--------QNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC--------CCceEEEEEEehhhCCCCeEEEEEccc
Confidence 5677889999999997 6899999999997754443333333222 2378999999999999 8999999875
Q ss_pred Cc
Q psy4613 87 GE 88 (96)
Q Consensus 87 g~ 88 (96)
..
T Consensus 83 ~~ 84 (95)
T cd05845 83 LR 84 (95)
T ss_pred cc
Confidence 43
No 89
>KOG3513|consensus
Probab=99.35 E-value=1.5e-11 Score=74.75 Aligned_cols=84 Identities=29% Similarity=0.498 Sum_probs=68.9
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccc---eEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSER---YEVESISRSIFDFKMRLTIKKITKYDLGSY 78 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 78 (96)
|.+....+...+..|+.+.+.|.+.+.|.|.+.|.+++..+. ...+ ..+ ...+|.|.++...|+|.|
T Consensus 332 P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~-~~~r~~~~~i---------~~g~L~is~v~~~dsg~Y 401 (1051)
T KOG3513|consen 332 PYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLE-PAERDPRYKI---------DDGTLIISNVQESDSGVY 401 (1051)
T ss_pred chhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecC-ccCCCcceEE---------eCCEEEEEecccccCeEE
Confidence 555566778889999999999999999999999999976654 2222 333 347899999999999999
Q ss_pred EEEEecCCCceEEEEEe
Q psy4613 79 KCIAKNSLGEVESSIRL 95 (96)
Q Consensus 79 ~c~~~~~~g~~~~~~~l 95 (96)
+|.+.|..|...+...|
T Consensus 402 QC~A~Nk~G~i~anA~L 418 (1051)
T KOG3513|consen 402 QCIAENKYGTIYANAEL 418 (1051)
T ss_pred EeeeecccceEeeeeEE
Confidence 99999999988777655
No 90
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.34 E-value=2.4e-11 Score=55.72 Aligned_cols=77 Identities=17% Similarity=0.130 Sum_probs=51.6
Q ss_pred eeecCCCcEEEEEEeeecccceeEEeecccee-Eeccc------------ceEEEEeccccceEEEEEEEccCCCCCCee
Q psy4613 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDM-VISSE------------RYEVESISRSIFDFKMRLTIKKITKYDLGS 77 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~-~~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 77 (96)
+.+..|++++|.|.+.+.+.+.+.|++.+... ....+ +...... ........|.|.+++.+|+|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~--~~~~g~~~L~I~~l~~sDsgt 79 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRN--LWDQGSFPLIIKNLKIEDSDT 79 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecc--cCCCCeEEEEECCCCHHHCEE
Confidence 35788999999999998888999998654222 11111 1111110 000123569999999999999
Q ss_pred EEEEEecCCCce
Q psy4613 78 YKCIAKNSLGEV 89 (96)
Q Consensus 78 y~c~~~~~~g~~ 89 (96)
|.|.+.+..+..
T Consensus 80 Y~C~v~~~~~~~ 91 (94)
T cd07690 80 YICEVEDKKEEV 91 (94)
T ss_pred EEEEECCccceE
Confidence 999998876543
No 91
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.34 E-value=1.6e-11 Score=56.20 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=53.4
Q ss_pred eeeecCCCcEEEEEEeeec-----ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 10 LVGAPIDTDVTLECYVEAY-----PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
...+..|+...|.|...+. +.|.+.|++++..+.. .+.... ....|.|..+..+|+|.|.|.+.+
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~--~~~~~~--------~~~~L~I~~v~~~DsG~YtC~~~n 73 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG--DRKRFV--------KGSKLLIQNVTEEDAGNYTCKLTF 73 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC--CccEEe--------cCCEEEEeeCChhhCEEEEEEEEe
Confidence 3457889999999986532 4679999999765432 222211 236799999999999999999999
Q ss_pred CCCceEEE
Q psy4613 85 SLGEVESS 92 (96)
Q Consensus 85 ~~g~~~~~ 92 (96)
..+.....
T Consensus 74 ~~~~~~~~ 81 (92)
T cd05757 74 THNGKQYN 81 (92)
T ss_pred cCCCEEEE
Confidence 87765444
No 92
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.33 E-value=3.5e-10 Score=52.05 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=51.7
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-------cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-------SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
+.+.+..|+++.|.|.+.+.+.+.+.|++.+...+. ...++..... . .....|.|.+++..|.|.|.|.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~--~--~~~~~L~I~~v~~~DsG~Y~C~ 80 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNF--S--ANELSISISNVSLSDEGRYTCS 80 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcC--C--CCeeEEEEccCCcccCEEEEEE
Confidence 456788999999999998878889999864332221 1123322110 0 1235799999999999999999
Q ss_pred EecCC
Q psy4613 82 AKNSL 86 (96)
Q Consensus 82 ~~~~~ 86 (96)
+....
T Consensus 81 ~~~~~ 85 (95)
T cd05717 81 LYTMP 85 (95)
T ss_pred EecCC
Confidence 98754
No 93
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.32 E-value=3.2e-11 Score=50.98 Aligned_cols=63 Identities=33% Similarity=0.521 Sum_probs=46.8
Q ss_pred CCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 15 IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 15 ~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
.|..+.|.|.+.+.+.+.+.|++++..+. ....... ....|.|.++...|.|.|.|.+.+..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~---~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP---ESNRLSA-------SGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC---CCCEEec-------CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 37789999998888888999998765443 1111111 235789999999999999999988654
No 94
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.32 E-value=5e-10 Score=49.91 Aligned_cols=80 Identities=31% Similarity=0.443 Sum_probs=56.9
Q ss_pred eeeecCCCcEEEEEEeeecccceeEEeec-cceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKSINYWVRD-QGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
.+.+..|+.+.|.|.+.+.+.+.+.|++. +..+. ...+....... ....|.|.+++..|.|.|.|.+.+..+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~-~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA-ESGRFSVSRSG-----SNSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC-CCCcEEEEEcC-----CeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 45578899999999999887889999887 33322 22333322211 1367999999999999999999987776
Q ss_pred eEEEEEe
Q psy4613 89 VESSIRL 95 (96)
Q Consensus 89 ~~~~~~l 95 (96)
....+.|
T Consensus 77 ~~~~~~l 83 (86)
T smart00410 77 ASSTTTL 83 (86)
T ss_pred EEEEEEE
Confidence 6555443
No 95
>smart00409 IG Immunoglobulin.
Probab=99.32 E-value=5e-10 Score=49.91 Aligned_cols=80 Identities=31% Similarity=0.443 Sum_probs=56.9
Q ss_pred eeeecCCCcEEEEEEeeecccceeEEeec-cceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKSINYWVRD-QGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
.+.+..|+.+.|.|.+.+.+.+.+.|++. +..+. ...+....... ....|.|.+++..|.|.|.|.+.+..+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~-~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA-ESGRFSVSRSG-----SNSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC-CCCcEEEEEcC-----CeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 45578899999999999887889999887 33322 22333322211 1367999999999999999999987776
Q ss_pred eEEEEEe
Q psy4613 89 VESSIRL 95 (96)
Q Consensus 89 ~~~~~~l 95 (96)
....+.|
T Consensus 77 ~~~~~~l 83 (86)
T smart00409 77 ASSTTTL 83 (86)
T ss_pred EEEEEEE
Confidence 6555443
No 96
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.31 E-value=6.3e-10 Score=51.37 Aligned_cols=86 Identities=20% Similarity=0.316 Sum_probs=63.9
Q ss_pred ceeeecCCCcEEEEEEeeecccce-eEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSI-NYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
..+.+..|.++.|.|.+...|.|. +.|.+.+..+....... ..........-.+.|.+..++..|.|.|.|.+.|...
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~-~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHY-VKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccce-eEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence 456789999999999999999997 99998765543222221 1111111222458899999999999999999999988
Q ss_pred ceEEEEEe
Q psy4613 88 EVESSIRL 95 (96)
Q Consensus 88 ~~~~~~~l 95 (96)
....++.|
T Consensus 90 ~~s~tF~l 97 (101)
T cd05860 90 SASVTFNV 97 (101)
T ss_pred eEEEEEEE
Confidence 88877765
No 97
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.30 E-value=1.7e-10 Score=52.68 Aligned_cols=75 Identities=21% Similarity=0.356 Sum_probs=50.6
Q ss_pred eeeecCCCcEEEEEEeeecccceeEEeeccce--eEe---cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGD--MVI---SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
.+.+..|+++.|.|.. +.|.+.+.|++.... ... ...++.. ....|.|..+...|+|.|.|.+.+
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~---------~~~~L~I~~~~~~DsG~Y~C~a~~ 74 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH---------TERGLLLRSLQRSDAGVYTCTAVE 74 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE---------ecCeEEEeeCChhHCEEEEEEEEc
Confidence 4557889999999996 468889999974321 110 1122221 225689999999999999999974
Q ss_pred -CCCceEEEEE
Q psy4613 85 -SLGEVESSIR 94 (96)
Q Consensus 85 -~~g~~~~~~~ 94 (96)
..+.......
T Consensus 75 ~~~~~~~~~~~ 85 (91)
T cd05871 75 HSFSQTLAKYT 85 (91)
T ss_pred cCCeEEEEEEE
Confidence 5554444433
No 98
>KOG3513|consensus
Probab=99.28 E-value=3.1e-11 Score=73.53 Aligned_cols=77 Identities=32% Similarity=0.516 Sum_probs=64.5
Q ss_pred eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~ 89 (96)
.+.+..|..+.|.|.+.+.|.+.+.|.+.+. ......++.+.. ..+|.|.+++..|+|.|.|.+.|.+|..
T Consensus 435 ~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~-~~~~~~r~~i~e--------dGtL~I~n~t~~DaG~YtC~A~N~~G~a 505 (1051)
T KOG3513|consen 435 KVMAVVGGTVTIDCKPFASPKPKVSWLKGGE-KLLQSGRIRILE--------DGTLEISNVTRSDAGKYTCVAENKLGKA 505 (1051)
T ss_pred EEEEEeCCeEEEeeccCCCCcceEEEEcCCc-ccccCceEEECC--------CCcEEecccCcccCcEEEEEEEcccCcc
Confidence 3567889999999999999999999999866 444667776653 4789999999999999999999999987
Q ss_pred EEEEEe
Q psy4613 90 ESSIRL 95 (96)
Q Consensus 90 ~~~~~l 95 (96)
.....|
T Consensus 506 ~~~~~L 511 (1051)
T KOG3513|consen 506 ESTGNL 511 (1051)
T ss_pred ceEEEE
Confidence 766544
No 99
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.28 E-value=2.8e-11 Score=55.54 Aligned_cols=72 Identities=24% Similarity=0.295 Sum_probs=52.8
Q ss_pred ceeeecCCCcEEEEEE-eeecccceeEEeeccceeEe-cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 9 QLVGAPIDTDVTLECY-VEAYPKSINYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~-~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
....+..|..+.|.|. ..+.|.+.+.|++++..... ...+..... ..+.|.+.+++..|.|.|.|.+.+..
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~-------~~G~L~fs~v~~~D~g~Y~C~A~n~~ 83 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ-------TNGNLYIAKVEASDRGNYSCFVSSPS 83 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC-------CCCcEEEeecCHhhCceeEEEEEecc
Confidence 4456788999999997 46778899999998654321 222222211 23679999999999999999999865
Q ss_pred C
Q psy4613 87 G 87 (96)
Q Consensus 87 g 87 (96)
.
T Consensus 84 ~ 84 (96)
T cd05727 84 S 84 (96)
T ss_pred c
Confidence 4
No 100
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.27 E-value=7.6e-11 Score=50.39 Aligned_cols=63 Identities=27% Similarity=0.475 Sum_probs=42.2
Q ss_pred CCcEEEEEEe-eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613 16 DTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA 82 (96)
Q Consensus 16 g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 82 (96)
|+++.|.|.+ ...+...+.|++++....... ...... ........|.|.+++..|+|.|.|.+
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGS-TTNRST---NSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEE-EEEEEE---TTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcc-eeEeec---ccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6789999999 666777999999865543211 111110 01101224999999999999999975
No 101
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.25 E-value=2.2e-09 Score=49.33 Aligned_cols=74 Identities=15% Similarity=0.297 Sum_probs=53.9
Q ss_pred CceeeecCCCcEEEEEEeeecccceeEEeeccceeE-------ecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMV-------ISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
.+.+.+..|+++.|.|.........+.|++.+...+ ...+|+...... ....+|.|..++..|+|.|.|
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~----~~~~tL~I~~vq~~D~G~Y~C 79 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFS----SNELRVSLSNVSLSDEGRYFC 79 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCC----CCEEEEEECcCCcccCEEEEE
Confidence 355778999999999999987777888987664443 123344433211 134679999999999999999
Q ss_pred EEecC
Q psy4613 81 IAKNS 85 (96)
Q Consensus 81 ~~~~~ 85 (96)
-+...
T Consensus 80 qv~t~ 84 (95)
T cd05881 80 QLYTD 84 (95)
T ss_pred EEEcc
Confidence 98753
No 102
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=99.24 E-value=2.9e-10 Score=49.76 Aligned_cols=74 Identities=34% Similarity=0.452 Sum_probs=49.5
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecc-cceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
+|.+...+.......+. +.|.|.+.+.+ .+.+.|+.. .......... . ......|.+..+...|.|.|.
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~-~~~~~~~~~~-~-------~~~~~~L~i~~v~~~~~g~y~ 70 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDS-NPSFNSNSRG-S-------SSSNSTLTISNVTRSDNGTYT 70 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETE-EEEEEEEEEE-E-------EEEEEEEEESSCCGGGTEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEec-CCceeeeeee-c-------cceeeEEEEccCCHHhCcEEE
Confidence 47777666665554444 99999998877 778999811 1111110111 1 114578999999999999999
Q ss_pred EEEec
Q psy4613 80 CIAKN 84 (96)
Q Consensus 80 c~~~~ 84 (96)
|.+.|
T Consensus 71 C~a~N 75 (75)
T PF13927_consen 71 CIASN 75 (75)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99875
No 103
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.22 E-value=2e-10 Score=51.67 Aligned_cols=64 Identities=22% Similarity=0.138 Sum_probs=48.7
Q ss_pred eeecCCCcEEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 11 VGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
..+..|+.++|.|.... .+...+.|++++..+... . ....+.|..++..|+|.|.|.+.+..+.
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~-------~-------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~ 73 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS-------H-------SNSNLSIPQATLSDSGSYHCSGIIGSYD 73 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc-------C-------CCceEEECccCHHHCEEEEEEEEeCCce
Confidence 35789999999999754 455679999986433210 0 1256899999999999999999988764
No 104
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.21 E-value=1.2e-09 Score=51.38 Aligned_cols=79 Identities=18% Similarity=0.181 Sum_probs=54.1
Q ss_pred EecCceeeecCCCcEEEEEEeeecccceeEEeeccce--e--E-e--------cccceEEEEeccccceEEEEEEEccCC
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGD--M--V-I--------SSERYEVESISRSIFDFKMRLTIKKIT 71 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~--~--~-~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~ 71 (96)
..++..+.+..|+++.|.|.+...+...+.|++.... . + . ...++.+.... ......|.|.+++
T Consensus 2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~~~ 78 (109)
T cd04983 2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDK---SRKSSSLHISAAQ 78 (109)
T ss_pred eecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcc---cCCEEEEEECCCC
Confidence 3456677899999999999988777778999875321 1 0 0 11222221110 1134679999999
Q ss_pred CCCCeeEEEEEecCC
Q psy4613 72 KYDLGSYKCIAKNSL 86 (96)
Q Consensus 72 ~~d~g~y~c~~~~~~ 86 (96)
.+|+|.|.|.+.+..
T Consensus 79 ~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 79 LSDSAVYFCALSESG 93 (109)
T ss_pred HHHCEEEEEEEecCC
Confidence 999999999998654
No 105
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.20 E-value=1.4e-09 Score=60.13 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=54.9
Q ss_pred ceeeecCCCcEEEEEEeeeccc---ceeEEeeccceeEecc--cceEEEEecc-----ccceEEEEEEEccCCCCCCeeE
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPK---SINYWVRDQGDMVISS--ERYEVESISR-----SIFDFKMRLTIKKITKYDLGSY 78 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~---~~~~w~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~g~y 78 (96)
....+..|+.+.|.|.+.+.|. +.+.|.+++..+.... ...++..... ........|.|.+++.+|.|.|
T Consensus 228 ~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y 307 (326)
T PHA02785 228 EGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTF 307 (326)
T ss_pred CcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeee
Confidence 4556678999999999998776 4789999865542111 1111111000 0011346799999999999999
Q ss_pred EEEEecCCCceE
Q psy4613 79 KCIAKNSLGEVE 90 (96)
Q Consensus 79 ~c~~~~~~g~~~ 90 (96)
.|.+.+..+...
T Consensus 308 ~C~A~n~~~~~~ 319 (326)
T PHA02785 308 TCMAFTIPSISK 319 (326)
T ss_pred EEEEEeccCceE
Confidence 999999876544
No 106
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.17 E-value=1.8e-09 Score=47.84 Aligned_cols=69 Identities=29% Similarity=0.476 Sum_probs=50.4
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+..++ ..+..|+.+.|.|.+.+.+...+.|++++..+. ... ..+.+..+...|.|.|.|
T Consensus 1 kP~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~-~~~---------------~~~~~~~~~~~~~g~y~C 62 (80)
T PF13895_consen 1 KPVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPIN-SSQ---------------NGLFIPNVSPEDSGNYTC 62 (80)
T ss_dssp --EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEE-EES---------------SEEEESSEEGGGTEEEEE
T ss_pred CcEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeee-eee---------------eeeeeeeeccccCEEEEE
Confidence 47777666 346889999999999988888999998754332 100 115567788899999999
Q ss_pred EEecCCC
Q psy4613 81 IAKNSLG 87 (96)
Q Consensus 81 ~~~~~~g 87 (96)
.+.+..+
T Consensus 63 ~~~~~~~ 69 (80)
T PF13895_consen 63 RASNGSG 69 (80)
T ss_dssp EEEETTE
T ss_pred EEEeCCC
Confidence 9998654
No 107
>KOG4194|consensus
Probab=99.14 E-value=2.3e-10 Score=66.87 Aligned_cols=87 Identities=22% Similarity=0.359 Sum_probs=66.0
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccce-eEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGD-MVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
|.+...|..+....|+.+.+.|.+.|.|.|.+.|.+.++. .+... .+.+.... ...+.|.+++.+|.|.|.
T Consensus 613 PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpe-------dd~f~Itnvk~eD~GiYt 685 (873)
T KOG4194|consen 613 PSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPE-------DDVFFITNVKIEDQGIYT 685 (873)
T ss_pred CccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCC-------CCEEEEecccccccceeE
Confidence 4455556667788899999999999999999999988655 33222 23444332 245789999999999999
Q ss_pred EEEecCCCceEEEEEe
Q psy4613 80 CIAKNSLGEVESSIRL 95 (96)
Q Consensus 80 c~~~~~~g~~~~~~~l 95 (96)
|.+.|.+|...+...|
T Consensus 686 C~A~n~AG~isanAtL 701 (873)
T KOG4194|consen 686 CTAQNVAGQISANATL 701 (873)
T ss_pred EeeeccccceeeceEE
Confidence 9999999987665543
No 108
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.13 E-value=1.3e-09 Score=57.38 Aligned_cols=68 Identities=21% Similarity=0.344 Sum_probs=50.6
Q ss_pred eeeecCCCcEEEEEEeee-----cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 10 LVGAPIDTDVTLECYVEA-----YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~-----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
...+..|+.+.|.|.+.+ .|.|.+.|++++..+. ...+..... ....|.|.+++.+|+|.|.|.+..
T Consensus 138 ~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~-~~~r~~~~~-------~~~~L~I~~V~~~DsG~YtC~a~~ 209 (227)
T PHA02826 138 NYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL-YTDRIQLRN-------NNSTLVIKSATHDDSGIYTCNLRF 209 (227)
T ss_pred cceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECC-CCCCEEEeC-------CCCEEEECcCCHHhCEEEEEEEEE
Confidence 345678999999999753 3568999999976653 334443322 235799999999999999999987
Q ss_pred C
Q psy4613 85 S 85 (96)
Q Consensus 85 ~ 85 (96)
.
T Consensus 210 ~ 210 (227)
T PHA02826 210 N 210 (227)
T ss_pred e
Confidence 5
No 109
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.13 E-value=1.9e-09 Score=50.84 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=51.9
Q ss_pred EecCceeeecCCCcEEEEEEeeecccceeEEeeccc--e--eEe--c-----------ccceEEEEeccccceEEEEEEE
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--D--MVI--S-----------SERYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~--~~~--~-----------~~~~~~~~~~~~~~~~~~~l~i 67 (96)
...+..+.+..|++++|.|...+ +.+.+.|++... . .+. . .+++..... . .....|.|
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~--~--~~~~~L~I 76 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP--S--LTRSSLTI 76 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc--C--CCccEEEE
Confidence 34566788999999999999887 677899998532 1 111 0 011111110 0 02467999
Q ss_pred ccCCCCCCeeEEEEEecC
Q psy4613 68 KKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~ 85 (96)
.+++.+|+|.|.|.+...
T Consensus 77 ~~~~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 77 KSAEPEDSAVYLCASSLG 94 (110)
T ss_pred CCCChhhCEEEEEEeeCC
Confidence 999999999999998864
No 110
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=99.10 E-value=3.2e-09 Score=49.78 Aligned_cols=77 Identities=14% Similarity=0.294 Sum_probs=52.0
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc-cceeEEeeccc----eeEe-cc--------cceEEEEeccccceEEEEEEEcc
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRDQG----DMVI-SS--------ERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~----~~~~-~~--------~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
+...+..+.+..|+++.|.|.+.+.. ...+.|++... ..+. .. .++.... ......|.|.+
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~ 77 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG-----SGTDFTLTISR 77 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec-----cCCEEEEEECC
Confidence 45667778899999999999987655 56799987531 1111 00 1121110 11235699999
Q ss_pred CCCCCCeeEEEEEecC
Q psy4613 70 ITKYDLGSYKCIAKNS 85 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~ 85 (96)
++..|+|.|.|.+.+.
T Consensus 78 ~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 78 VEPEDAAVYYCQQYGT 93 (106)
T ss_pred CChHHCEEEEEEEeCC
Confidence 9999999999998754
No 111
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.06 E-value=5.7e-09 Score=48.44 Aligned_cols=80 Identities=16% Similarity=0.205 Sum_probs=53.8
Q ss_pred ceeeecCCCcEEEEEEe-e----------ecccceeEEeeccceeEecc----cceEEEEeccccceEEEEEEEccCCCC
Q psy4613 9 QLVGAPIDTDVTLECYV-E----------AYPKSINYWVRDQGDMVISS----ERYEVESISRSIFDFKMRLTIKKITKY 73 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~-~----------~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~i~~~~~~ 73 (96)
..+.+..|+.+.|.|.. . ......+.|++++....... ...++.. ....|.|..+..+
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~-------~~~~Lwf~Pa~~e 80 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSK-------EEDSIWFRPAELQ 80 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEE-------eCCEEEEEeCChh
Confidence 34668899999999985 1 11233789999853332211 1012222 3467999999999
Q ss_pred CCeeEEEEEecCCCceEEEEEe
Q psy4613 74 DLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 74 d~g~y~c~~~~~~g~~~~~~~l 95 (96)
|+|.|.|.+.|........+.|
T Consensus 81 DSG~Y~C~~rN~t~C~~~~i~l 102 (104)
T cd05896 81 DSGLYTCVLRNSTYCMKVSMSL 102 (104)
T ss_pred hCeEEEEEECCCCcceEEEEEE
Confidence 9999999999987666655543
No 112
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.06 E-value=1.1e-09 Score=50.29 Aligned_cols=71 Identities=17% Similarity=0.113 Sum_probs=49.2
Q ss_pred eeecCCCcEEEEEEe-e----ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 11 VGAPIDTDVTLECYV-E----AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~-~----~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
..+..|.+..|.|.- . ..+.+.+.|++++..+.....++.... ....|.|..+...|.|.|.|.+.+.
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~YtC~~~~~ 77 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK-------GSTYLHIIDVSLNDSGYYTCKLQFT 77 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC-------CCCEEEEEEcChhhCEEEEEEEEEe
Confidence 346788999999973 2 235668999999755432222222111 1246999999999999999999997
Q ss_pred CCc
Q psy4613 86 LGE 88 (96)
Q Consensus 86 ~g~ 88 (96)
.+.
T Consensus 78 ~~g 80 (95)
T cd05897 78 HEG 80 (95)
T ss_pred eCC
Confidence 654
No 113
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=99.04 E-value=5.5e-09 Score=47.74 Aligned_cols=74 Identities=18% Similarity=0.311 Sum_probs=50.7
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+. ..+..|.+++|.|... .+...+.|++++......... .......+.|.+++..|+|.|.|
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~---------~~~~~~~f~i~~v~~~~~G~Y~C 70 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPP---------EPQNKAKFFIPSMKREHAGRYRC 70 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccC---------CCceeEEEEccCCChhHCEEEEE
Confidence 366666554 3578999999999875 455677888876432211000 00134678999999999999999
Q ss_pred EEecC
Q psy4613 81 IAKNS 85 (96)
Q Consensus 81 ~~~~~ 85 (96)
...+.
T Consensus 71 ~~~~~ 75 (91)
T cd05751 71 YYRSG 75 (91)
T ss_pred EEECC
Confidence 98775
No 114
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=99.03 E-value=2.3e-08 Score=46.87 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=49.3
Q ss_pred CCCcEEEEEEeeecc------cceeEEeecc-----ceeE-e-cccceEE------EEeccccceEEEEEEEccCCCCCC
Q psy4613 15 IDTDVTLECYVEAYP------KSINYWVRDQ-----GDMV-I-SSERYEV------ESISRSIFDFKMRLTIKKITKYDL 75 (96)
Q Consensus 15 ~g~~~~l~c~~~~~~------~~~~~w~~~~-----~~~~-~-~~~~~~~------~~~~~~~~~~~~~l~i~~~~~~d~ 75 (96)
.|++++|.|.+...+ ...+.|++.. .... . ....... .............|.|.+++..|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 488999999987643 4588998862 1111 1 1111110 000000011347799999999999
Q ss_pred eeEEEEEecCCCceEEEEEe
Q psy4613 76 GSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 76 g~y~c~~~~~~g~~~~~~~l 95 (96)
|.|.|.+.+..+.....+.|
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L 100 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVEL 100 (106)
T ss_pred EEEEEEEEcCCCceEEEEEE
Confidence 99999999876655555443
No 115
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=99.02 E-value=9.6e-09 Score=48.89 Aligned_cols=76 Identities=21% Similarity=0.370 Sum_probs=50.8
Q ss_pred ecCceeeecCCCcEEEEEEeee--cccceeEEeeccc----eeEe--c------------ccceEEEEeccccceEEEEE
Q psy4613 6 VPNQLVGAPIDTDVTLECYVEA--YPKSINYWVRDQG----DMVI--S------------SERYEVESISRSIFDFKMRL 65 (96)
Q Consensus 6 ~~~~~~~~~~g~~~~l~c~~~~--~~~~~~~w~~~~~----~~~~--~------------~~~~~~~~~~~~~~~~~~~l 65 (96)
..+..+.+..|+++.|.|...+ .+.+.+.|++... ..+. . ..++...... ......|
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L 79 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDV---GKSTSTL 79 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEEC---CCCEEEE
Confidence 4556778899999999999877 5677899998521 1110 0 1122211100 0024679
Q ss_pred EEccCCCCCCeeEEEEEec
Q psy4613 66 TIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 66 ~i~~~~~~d~g~y~c~~~~ 84 (96)
.|.+++..|+|.|.|....
T Consensus 80 ~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 80 TIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred EEEECCHHHCEEEEEEEec
Confidence 9999999999999999875
No 116
>KOG4221|consensus
Probab=99.01 E-value=6e-09 Score=64.68 Aligned_cols=70 Identities=30% Similarity=0.456 Sum_probs=55.6
Q ss_pred CceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
+....+..|+.+.|.|.+.+.+.|.+.|.+++..+...+ +++... ....|.|.+++..|+|.|.|.+.|.
T Consensus 244 p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds--~rivl~------g~~slliS~a~~~dSg~YtC~Atn~ 313 (1381)
T KOG4221|consen 244 PSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS--YRIVLV------GGSSLLISNATDDDSGKYTCRATNT 313 (1381)
T ss_pred CCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc--eEEEEe------cccceEEeccccccCceEEEEecCC
Confidence 344567889999999999999999999999876665443 332221 2467899999999999999999984
No 117
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.98 E-value=2.6e-09 Score=48.14 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=49.0
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
+...+..|.++.|.|...+. .+.+.|++++..+. ...++... ...+.|..+...|+|.|.|.+..
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~-~~~r~~~~---------~~GLlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLN-AQFSYRVG---------TDGLLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccC-CCcceEEe---------CCCCEEEECCHhhCEEEEEEEec
Confidence 45678899999999998884 66999999876543 22333322 24577999999999999999764
No 118
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.95 E-value=1.7e-08 Score=46.69 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=45.8
Q ss_pred eecCCCcEEEEEEeeec--ccceeEEeeccc--ee--Ee-c--------ccceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613 12 GAPIDTDVTLECYVEAY--PKSINYWVRDQG--DM--VI-S--------SERYEVESISRSIFDFKMRLTIKKITKYDLG 76 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~--~~--~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g 76 (96)
.+..|+++.|.|..... ....+.|++... .+ +. . .+++.... ......|.|.+++..|+|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~-----~~~~~~L~I~~~~~~Dsg 76 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK-----SGNTASLTISGAQTEDEA 76 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc-----cCCEEEEEECCCChhhCE
Confidence 46789999999998764 456799987532 11 11 0 01222111 113466999999999999
Q ss_pred eEEEEEecC
Q psy4613 77 SYKCIAKNS 85 (96)
Q Consensus 77 ~y~c~~~~~ 85 (96)
.|.|.+.+.
T Consensus 77 ~Y~C~~~~~ 85 (98)
T cd04984 77 DYYCQVWDS 85 (98)
T ss_pred EEEEEEccC
Confidence 999998753
No 119
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.92 E-value=8.4e-08 Score=45.46 Aligned_cols=77 Identities=13% Similarity=0.325 Sum_probs=47.4
Q ss_pred CCCcEEEEEEeeecc------------cceeEEeeccc----eeEe-ccc----------ceEEEEeccccceEEEEEEE
Q psy4613 15 IDTDVTLECYVEAYP------------KSINYWVRDQG----DMVI-SSE----------RYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 15 ~g~~~~l~c~~~~~~------------~~~~~w~~~~~----~~~~-~~~----------~~~~~~~~~~~~~~~~~l~i 67 (96)
.|++++|.|.+.... .+.+.|++... .+.. ... |..+... ........|.|
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~--~~~~~~asL~I 78 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNY--PAIPSDATLEI 78 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEeccc--CCCCCCcEEEE
Confidence 488999999987532 35899997521 1111 111 1111100 00113467999
Q ss_pred ccCCCCCCeeEEEEEecCCCceEEEE
Q psy4613 68 KKITKYDLGSYKCIAKNSLGEVESSI 93 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~~g~~~~~~ 93 (96)
.+++..|+|.|.|.+...........
T Consensus 79 ~nl~~sDsG~Y~C~V~~g~~~~~~~v 104 (112)
T cd05900 79 TELRSNDSGTYRCEVMHGIEDNYDTV 104 (112)
T ss_pred eecccccCEEEEEEEecCCCCceeEE
Confidence 99999999999999987766554443
No 120
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.91 E-value=1.2e-07 Score=44.03 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=27.4
Q ss_pred EEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 62 ~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
..+|.|.+++..|.|.|.|.+.+..+.....+.|
T Consensus 64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l 97 (100)
T cd05713 64 SVALRIHNVRASDEGLYTCFFQSDGFYEEATVEL 97 (100)
T ss_pred cEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEE
Confidence 3679999999999999999999876665555543
No 121
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.90 E-value=1.6e-07 Score=44.02 Aligned_cols=77 Identities=23% Similarity=0.381 Sum_probs=49.1
Q ss_pred CCCcEEEEEEeeecc------cceeEEeeccce-----e-Eecc-----------cceEEEEeccccceEEEEEEEccCC
Q psy4613 15 IDTDVTLECYVEAYP------KSINYWVRDQGD-----M-VISS-----------ERYEVESISRSIFDFKMRLTIKKIT 71 (96)
Q Consensus 15 ~g~~~~l~c~~~~~~------~~~~~w~~~~~~-----~-~~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~ 71 (96)
.|++++|.|.+...+ ...+.|++.... . .... .+..+.. .. .....|.|.+++
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~-~~~~sL~I~~v~ 76 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRR---AH-DLDASLVITDLR 76 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecC---CC-CCcEEEEEccCC
Confidence 378999999987642 346899985311 1 0010 0111100 00 123579999999
Q ss_pred CCCCeeEEEEEecCCCceEEEEEe
Q psy4613 72 KYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 72 ~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
..|+|.|.|.+.+..+.....+.|
T Consensus 77 ~~DsG~Y~C~v~~~~~~~~~~~~l 100 (106)
T cd05877 77 LEDYGRYRCEVIDGLEDESVVVAL 100 (106)
T ss_pred hHHCEEEEEEEEecccceEEEEEE
Confidence 999999999999988876666544
No 122
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.89 E-value=7.2e-08 Score=45.91 Aligned_cols=78 Identities=22% Similarity=0.371 Sum_probs=51.2
Q ss_pred EEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccc--e--eEec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQG--D--MVIS---------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~--~--~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
+...+..+.+..|+++.|.|..... ....+.|++... . .+.. .+++..... .......|.|.+
T Consensus 2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~~ 78 (116)
T cd07706 2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQ---KAQKSISLTISA 78 (116)
T ss_pred cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEe---ccCCEEEEEECC
Confidence 3456677889999999999997754 456789987521 1 1110 122222110 011246799999
Q ss_pred CCCCCCeeEEEEEec
Q psy4613 70 ITKYDLGSYKCIAKN 84 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~ 84 (96)
++..|.|.|.|.+..
T Consensus 79 ~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 79 LQLEDSAKYFCALST 93 (116)
T ss_pred CCHHHCEEEEEEEEC
Confidence 999999999999985
No 123
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.89 E-value=1.8e-07 Score=44.24 Aligned_cols=80 Identities=19% Similarity=0.387 Sum_probs=46.6
Q ss_pred CCCcEEEEEEeeecc----------cceeEEeeccc--ee--E-ecccc------e--EEEEeccccceEEEEEEEccCC
Q psy4613 15 IDTDVTLECYVEAYP----------KSINYWVRDQG--DM--V-ISSER------Y--EVESISRSIFDFKMRLTIKKIT 71 (96)
Q Consensus 15 ~g~~~~l~c~~~~~~----------~~~~~w~~~~~--~~--~-~~~~~------~--~~~~~~~~~~~~~~~l~i~~~~ 71 (96)
.|++++|.|.....+ ...+.|++... .. . ..... + ++.-...........|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 488999999987543 25689998521 11 1 01111 0 0000000001123669999999
Q ss_pred CCCCeeEEEEEecCCCceEEEEE
Q psy4613 72 KYDLGSYKCIAKNSLGEVESSIR 94 (96)
Q Consensus 72 ~~d~g~y~c~~~~~~g~~~~~~~ 94 (96)
..|+|.|.|.+..........+.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~ 103 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVP 103 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEE
Confidence 99999999999876544444443
No 124
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.89 E-value=2.2e-08 Score=52.86 Aligned_cols=86 Identities=23% Similarity=0.263 Sum_probs=54.9
Q ss_pred ceeeecCCCcEEEEEEeeecc-----------cceeEEeeccceeEe--cccceEEEEecccc-ceEEEEEEEccCCCCC
Q psy4613 9 QLVGAPIDTDVTLECYVEAYP-----------KSINYWVRDQGDMVI--SSERYEVESISRSI-FDFKMRLTIKKITKYD 74 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~-----------~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d 74 (96)
..+.+.+|+.+.|.|.+.+.+ .+.+.|++.+..... ...+.......... ......|.|.+++..|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 456788999999999976533 448899987543211 11110000000000 0023579999999999
Q ss_pred CeeEEEEEecCCCceEEEEE
Q psy4613 75 LGSYKCIAKNSLGEVESSIR 94 (96)
Q Consensus 75 ~g~y~c~~~~~~g~~~~~~~ 94 (96)
+|.|.|.+.|..+.....+.
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~ 129 (227)
T PHA02826 110 EGIYICTISSGNICEESTIR 129 (227)
T ss_pred CEEEEEEEEECCcceEEEEE
Confidence 99999999998877655544
No 125
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.87 E-value=2.4e-07 Score=43.58 Aligned_cols=79 Identities=27% Similarity=0.426 Sum_probs=52.5
Q ss_pred EEecCceeeecCCCcEEEEEEee-ecccceeEEeeccc----eeEe-c-c------------cceEEEEeccccceEEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQG----DMVI-S-S------------ERYEVESISRSIFDFKMR 64 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~----~~~~-~-~------------~~~~~~~~~~~~~~~~~~ 64 (96)
+..++..+.+..|+++.|.|... ......+.|++... ..+. . . .+..+.... ......
T Consensus 4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~s 80 (114)
T PF07686_consen 4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNG---SQNNFS 80 (114)
T ss_dssp EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEET---TTTEEE
T ss_pred EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecc---cCCeEE
Confidence 44557778899999999999998 44556889988432 1111 0 0 011111100 012467
Q ss_pred EEEccCCCCCCeeEEEEEecC
Q psy4613 65 LTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 65 l~i~~~~~~d~g~y~c~~~~~ 85 (96)
|.|.+++..|+|.|.|.+...
T Consensus 81 L~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 81 LTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp EEESSESGGGEEEEEEEEEES
T ss_pred EEECCCCcCcCEEEEEEEEEC
Confidence 999999999999999998876
No 126
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.87 E-value=1.6e-07 Score=42.04 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=41.6
Q ss_pred EEEEEEeee-cccceeEEeeccceeEecccceEEEEecc-ccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 19 VTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISR-SIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 19 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
+.|.|.+.+ .|.+.+.|++++..+. . .......... ..+...+.|.+......|.+.|.|.+.+..
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~-~-~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~ 69 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLD-G-ATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEA 69 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEcc-C-ceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCcc
Confidence 578999987 5778999999865442 1 1111111111 112234567777777778889999998854
No 127
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.85 E-value=1.1e-07 Score=44.32 Aligned_cols=73 Identities=22% Similarity=0.330 Sum_probs=48.3
Q ss_pred eecCCCcEEEEEEeeec-ccceeEEeeccc----eeEe------------cccceEEEEeccccceEEEEEEEccCCCCC
Q psy4613 12 GAPIDTDVTLECYVEAY-PKSINYWVRDQG----DMVI------------SSERYEVESISRSIFDFKMRLTIKKITKYD 74 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 74 (96)
.+..|+++.|.|.+... ....+.|++... ..+. ...+...... .......|.|.+++..|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~sL~I~~v~~~D 78 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRD---SSKSSFTLTISSLQPED 78 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEe---ccCCEEEEEECCCCHHH
Confidence 46789999999998875 566899988532 1110 0112221111 00024579999999999
Q ss_pred CeeEEEEEecCCC
Q psy4613 75 LGSYKCIAKNSLG 87 (96)
Q Consensus 75 ~g~y~c~~~~~~g 87 (96)
.|.|.|.+.+..+
T Consensus 79 ~G~Y~C~v~~~~~ 91 (105)
T cd00099 79 SAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEEEecCCC
Confidence 9999999987654
No 128
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.85 E-value=1.9e-07 Score=44.51 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=48.2
Q ss_pred CceeeecCCCcEEEEEEeeecc----cceeEEeeccc------eeE-ecc------------cceEEEEeccccceEEEE
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYP----KSINYWVRDQG------DMV-ISS------------ERYEVESISRSIFDFKMR 64 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~~------~~~-~~~------------~~~~~~~~~~~~~~~~~~ 64 (96)
+..+.+..|+.+.|.|.+.... ...+.|.+... ... ... .|..+.. +......+
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g---~~~~~daS 81 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVG---NPSRKDGS 81 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeC---CCCcCeeE
Confidence 3456788999999999987632 34788943211 011 000 1111111 11113467
Q ss_pred EEEccCCCCCCeeEEEEEecCCC
Q psy4613 65 LTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 65 l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
+.|.+++..|.|.|.|.+.+..+
T Consensus 82 I~I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 82 IVIHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred EEEccCCcccCEEEEEEEEcCCC
Confidence 99999999999999999998654
No 129
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.84 E-value=7.8e-08 Score=43.86 Aligned_cols=80 Identities=20% Similarity=0.147 Sum_probs=47.7
Q ss_pred CCcEEEEEEeeecccceeEEeeccceeEecc------cceEEEE---eccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 16 DTDVTLECYVEAYPKSINYWVRDQGDMVISS------ERYEVES---ISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~------~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
|++++|.|.........+.|++......... ....... ..+........|.|.+++..|+|.|.|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 6789999988775666899988643211000 0000000 000000123679999999999999999998875
Q ss_pred Cc-eEEEEEe
Q psy4613 87 GE-VESSIRL 95 (96)
Q Consensus 87 g~-~~~~~~l 95 (96)
+. ....+.|
T Consensus 81 ~~~~~~~~~l 90 (92)
T cd05741 81 GVTENAKFFL 90 (92)
T ss_pred CcEEEEEEEE
Confidence 43 3444443
No 130
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.84 E-value=3.3e-07 Score=43.71 Aligned_cols=80 Identities=19% Similarity=0.232 Sum_probs=48.1
Q ss_pred CceeeecCCCcEEEEEEeeecc----cceeEEeeccc-----e-eEe-c--------ccceEEEE-eccccceEEEEEEE
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYP----KSINYWVRDQG-----D-MVI-S--------SERYEVES-ISRSIFDFKMRLTI 67 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~~-----~-~~~-~--------~~~~~~~~-~~~~~~~~~~~l~i 67 (96)
+..+.+..|+.++|.|.+.... ...+.|++... . +.. . ..++.... ...+.......|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4556788999999999986532 24688976321 1 110 0 00110000 00001112367999
Q ss_pred ccCCCCCCeeEEEEEecCCC
Q psy4613 68 KKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~~g 87 (96)
.+++..|.|.|.|.+.+...
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeCCcccCEEEEEEEEeCCC
Confidence 99999999999999997544
No 131
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.84 E-value=1.5e-07 Score=44.87 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=48.3
Q ss_pred CceeeecCCCcEEEEEEeeecc----cceeEEeecc---ce--eE-ec--------ccceEEEE-eccccceEEEEEEEc
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYP----KSINYWVRDQ---GD--MV-IS--------SERYEVES-ISRSIFDFKMRLTIK 68 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~---~~--~~-~~--------~~~~~~~~-~~~~~~~~~~~l~i~ 68 (96)
+..+.+..|+++.|.|.+...+ ...+.|++.. .. .. .. ..++.... +..+.......|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4567789999999999986533 2368997521 11 11 00 00110000 000111124569999
Q ss_pred cCCCCCCeeEEEEEecCCC
Q psy4613 69 KITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~~~g 87 (96)
+++..|+|.|.|.+.+..+
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eCChhhCEEEEEEEEeCCC
Confidence 9999999999999997544
No 132
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.82 E-value=6.3e-08 Score=43.16 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=45.5
Q ss_pred EEEEEEee-ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 19 VTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 19 ~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
+.|.|... +.|.+.+.||+++..+... .. .......+...+.|.+......|.+.|.|.+.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~-~~---~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGV-IS---QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCC-cc---cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 67899965 5678899999997766321 10 0011111224567888888888999999999998764
No 133
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.80 E-value=1.4e-07 Score=43.66 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=48.7
Q ss_pred cCCCcEEEEEEeee-cccceeEEeeccceeEecccc---eEEEEecc-----c-cceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613 14 PIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSER---YEVESISR-----S-IFDFKMRLTIKKITKYDLGSYKCIAK 83 (96)
Q Consensus 14 ~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~---~~~~~~~~-----~-~~~~~~~l~i~~~~~~d~g~y~c~~~ 83 (96)
..|++++|.|.... .....+.|++........... ........ . .......|.|.+++..|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 36899999998755 445578899864333221110 00000000 0 00123679999999999999999998
Q ss_pred cCCCce-EEEE
Q psy4613 84 NSLGEV-ESSI 93 (96)
Q Consensus 84 ~~~g~~-~~~~ 93 (96)
...|.. ...+
T Consensus 82 ~~~~~~~~~~f 92 (97)
T cd05775 82 TKNGVTITKEF 92 (97)
T ss_pred cCCCCeEEEEE
Confidence 776643 3344
No 134
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.80 E-value=7.4e-08 Score=53.44 Aligned_cols=71 Identities=24% Similarity=0.186 Sum_probs=50.9
Q ss_pred eecCCCcEEEEEEe-----eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 12 GAPIDTDVTLECYV-----EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 12 ~~~~g~~~~l~c~~-----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
.+..|+.+.+.|.+ .+.|.+.+.|++++.... +..... ....+.|..+...|+|.|.|.+.|..
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~----~~~~~~-------~g~~l~i~~~~~~DsG~Y~C~a~N~~ 105 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADND----RIIPID-------NGSNMLILNPTQSDSGIYICITKNET 105 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCccc----eEEEcc-------CCceEEEcccCcccCeEEEEEEECCC
Confidence 45679999999996 577888999999864211 111111 01246688899999999999999998
Q ss_pred CceEEEE
Q psy4613 87 GEVESSI 93 (96)
Q Consensus 87 g~~~~~~ 93 (96)
|....++
T Consensus 106 g~~~~s~ 112 (326)
T PHA02785 106 YCDMMSL 112 (326)
T ss_pred cceEEEE
Confidence 8665554
No 135
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.77 E-value=4.2e-07 Score=41.99 Aligned_cols=73 Identities=18% Similarity=0.268 Sum_probs=47.2
Q ss_pred eeecCCCcEEEEEEeee-cccceeEEeeccce----eEe--------cccceEEEEeccccceEEEEEEEccCCCCCCee
Q psy4613 11 VGAPIDTDVTLECYVEA-YPKSINYWVRDQGD----MVI--------SSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~----~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 77 (96)
+.+..|++++|.|.... .....+.|++.... .+. ...++.+... .......|.|.+++.+|+|.
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~ 78 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDD---PDNGVFTVTLNQLRKEDAGW 78 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEec---CCCCEEEEEEcCCCHHHCEE
Confidence 35778999999998765 34567899876421 110 0122222110 01134679999999999999
Q ss_pred EEEEEecCC
Q psy4613 78 YKCIAKNSL 86 (96)
Q Consensus 78 y~c~~~~~~ 86 (96)
|.|.+....
T Consensus 79 Y~C~~~~~~ 87 (98)
T cd05716 79 YWCGVGDDG 87 (98)
T ss_pred EEEEcccCC
Confidence 999987653
No 136
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.74 E-value=7.6e-07 Score=40.96 Aligned_cols=75 Identities=15% Similarity=0.255 Sum_probs=49.2
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+. ..+..|++++|.|.... ....+.|++++...... ...... .......+.|..++..|+|.|.|
T Consensus 1 kP~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~----~~~~~~--~~~~~a~f~I~~~~~~~~G~Y~C 72 (94)
T cd05711 1 KPFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL----HLYEKH--HGGFQASFPLGPVTPAHAGTYRC 72 (94)
T ss_pred CCEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce----eccccc--CCeEEEEEEecCCCcccCEEEEE
Confidence 467776664 44789999999997655 44578899886442110 000000 00123578999999999999999
Q ss_pred EEe
Q psy4613 81 IAK 83 (96)
Q Consensus 81 ~~~ 83 (96)
...
T Consensus 73 ~~~ 75 (94)
T cd05711 73 YGS 75 (94)
T ss_pred EEE
Confidence 864
No 137
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.74 E-value=9.8e-07 Score=40.69 Aligned_cols=77 Identities=21% Similarity=0.297 Sum_probs=45.9
Q ss_pred CcEEEEEEeeecc---cceeEEeeccce---eEe---cc------c--ceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613 17 TDVTLECYVEAYP---KSINYWVRDQGD---MVI---SS------E--RYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 17 ~~~~l~c~~~~~~---~~~~~w~~~~~~---~~~---~~------~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
+++.|.|...... ...+.|++.... .+. .. + +.+.. ...... ....|.|.+++..|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~-~~~~~~-~~~sL~I~~v~~~D~G~Y~ 78 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVS-FLNSSL-EDATISISNLRLEDEGNYI 78 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEE-EeCCCC-CceEEEEccCCcccCEEEE
Confidence 3688999987644 347899986431 110 00 0 00110 000000 2467999999999999999
Q ss_pred EEEec-CCCceEEEEEe
Q psy4613 80 CIAKN-SLGEVESSIRL 95 (96)
Q Consensus 80 c~~~~-~~g~~~~~~~l 95 (96)
|.+.. +.|.....+.|
T Consensus 79 C~v~~~~~g~~~~~~~l 95 (98)
T cd05718 79 CEFATFPQGNRQKVTTL 95 (98)
T ss_pred EEEEeCCCCcEEEEEEE
Confidence 99864 56666655543
No 138
>KOG4194|consensus
Probab=98.74 E-value=4.7e-08 Score=57.65 Aligned_cols=83 Identities=22% Similarity=0.361 Sum_probs=61.0
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeeccc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
|....|-....+..|..+.+.|.+.+.+. |.+.|+++++.+. ..++..+.. ....+.+......|.|.|.|
T Consensus 707 p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil-~t~rh~f~d-------~dQllvv~~~~~~daG~yTc 778 (873)
T KOG4194|consen 707 PSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPIL-ITERHTFPD-------GDQLLVVKENLVEDAGIYTC 778 (873)
T ss_pred CcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceE-EeecccCCC-------CCeEEEEEehhhhhcceEEE
Confidence 44445556677889999999999998776 8999999876654 233333332 23456777778899999999
Q ss_pred EEecCCCceEEE
Q psy4613 81 IAKNSLGEVESS 92 (96)
Q Consensus 81 ~~~~~~g~~~~~ 92 (96)
.+++..|.....
T Consensus 779 em~~~~~~~~~~ 790 (873)
T KOG4194|consen 779 EMSNTLGTERIH 790 (873)
T ss_pred EEEeeccceeeE
Confidence 999988765443
No 139
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.70 E-value=1.3e-06 Score=41.87 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=48.1
Q ss_pred cCceeeecCCCcEEEEEEeeecc------cceeEEeeccce-----eEe--cc---------cceEEEEeccccceEEEE
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAYP------KSINYWVRDQGD-----MVI--SS---------ERYEVESISRSIFDFKMR 64 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~~------~~~~~w~~~~~~-----~~~--~~---------~~~~~~~~~~~~~~~~~~ 64 (96)
.+..+.+..|+.++|.|...... ...+.|++.... +.. .. .|+.... +.......
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~---~~~~~~~s 81 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLG---DLGKKNCS 81 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEec---CCCCCEEE
Confidence 35567899999999999876322 346889976321 110 00 1111100 11113467
Q ss_pred EEEccCCCCCCeeEEEEEecC
Q psy4613 65 LTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 65 l~i~~~~~~d~g~y~c~~~~~ 85 (96)
|.|.+++..|+|.|.|.++..
T Consensus 82 L~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 82 LLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EEEccCChhhCeEEEEEEEcC
Confidence 999999999999999998764
No 140
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.69 E-value=5.8e-07 Score=42.25 Aligned_cols=71 Identities=24% Similarity=0.449 Sum_probs=44.6
Q ss_pred eecCCCcEEEEEEeeec-ccceeEEeeccce-----e---E-ec------------ccceEEEEeccccceEEEEEEEcc
Q psy4613 12 GAPIDTDVTLECYVEAY-PKSINYWVRDQGD-----M---V-IS------------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~-----~---~-~~------------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
.+..|++++|.|..... ....+.|++.... + . .. .+++.+.... ......|.|.+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~---~~~~~~L~I~~ 78 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTS---DSSRYRLHINR 78 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEEC---CCCEEEEEECC
Confidence 47889999999998753 3457999975321 0 0 00 0111111000 00235699999
Q ss_pred CCCCCCeeEEEEEecC
Q psy4613 70 ITKYDLGSYKCIAKNS 85 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~ 85 (96)
++.+|+|.|.|.....
T Consensus 79 ~~~~Dsg~YyCa~~~~ 94 (107)
T cd07700 79 VKPEDSGTYFCMTVGS 94 (107)
T ss_pred CCHHHCEEEEEeEcCC
Confidence 9999999999998643
No 141
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.69 E-value=1.9e-06 Score=40.77 Aligned_cols=33 Identities=15% Similarity=0.443 Sum_probs=26.1
Q ss_pred EEEEEEccCCCCCCeeEEEEEecCCCceEEEEE
Q psy4613 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIR 94 (96)
Q Consensus 62 ~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~ 94 (96)
..+|.|.+++..|.|.|.|.+..........+.
T Consensus 71 ~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~ 103 (110)
T cd05902 71 NASLVLSRLRYSDSGTYRCEVVLGINDEQDTVP 103 (110)
T ss_pred eEEEEECCCCHHHCEEEEEEEEECCcccEEEEE
Confidence 468999999999999999999886554444443
No 142
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.67 E-value=2.5e-06 Score=40.71 Aligned_cols=34 Identities=26% Similarity=0.549 Sum_probs=28.0
Q ss_pred EEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 62 ~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
..+|.|.+++..|.|.|.|.+..........+.|
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L 111 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSL 111 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEE
Confidence 4779999999999999999999877766655543
No 143
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.67 E-value=4.9e-07 Score=41.44 Aligned_cols=74 Identities=15% Similarity=0.298 Sum_probs=47.1
Q ss_pred cCCCcEEEEEEeeec-cc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 14 PIDTDVTLECYVEAY-PK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 14 ~~g~~~~l~c~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
..|+.+.|.|.+.+. |. ..+.|++++...................+...+.|.+......+.+.|.|.+.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 468899999999997 43 479999986554321110112222222333456676666666688899999988654
No 144
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.66 E-value=1.1e-06 Score=40.64 Aligned_cols=78 Identities=24% Similarity=0.295 Sum_probs=44.4
Q ss_pred CCcEEEEEEeeeccc-ceeEEeeccce---eEe-c----c----cceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613 16 DTDVTLECYVEAYPK-SINYWVRDQGD---MVI-S----S----ERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA 82 (96)
Q Consensus 16 g~~~~l~c~~~~~~~-~~~~w~~~~~~---~~~-~----~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 82 (96)
|++++|.|....... ..+.|++.... .+. . . ..+.-.............|.|.+++..|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 678999998665433 36889875321 110 0 0 011000000000012467999999999999999997
Q ss_pred ec-CCCceEEEE
Q psy4613 83 KN-SLGEVESSI 93 (96)
Q Consensus 83 ~~-~~g~~~~~~ 93 (96)
.. +.|.....+
T Consensus 81 ~~~p~g~~~~~~ 92 (97)
T cd05846 81 NTFPDGSKSGTM 92 (97)
T ss_pred EeCCCCCeeeEE
Confidence 74 556554444
No 145
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.66 E-value=6.2e-07 Score=41.99 Aligned_cols=72 Identities=22% Similarity=0.277 Sum_probs=44.0
Q ss_pred ecCCCcEEEEEEeeecccceeEEeeccce----e--Ee-c-c-cceE-EE------EeccccceEEEEEEEccCCCCCCe
Q psy4613 13 APIDTDVTLECYVEAYPKSINYWVRDQGD----M--VI-S-S-ERYE-VE------SISRSIFDFKMRLTIKKITKYDLG 76 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~~~~~~~w~~~~~~----~--~~-~-~-~~~~-~~------~~~~~~~~~~~~l~i~~~~~~d~g 76 (96)
+..|++++|.|.........+.|++.... + +. . . .... .. ............|.|.+++.+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 57899999999876555567899986422 1 11 0 0 0000 00 000000013456999999999999
Q ss_pred eEEEEEec
Q psy4613 77 SYKCIAKN 84 (96)
Q Consensus 77 ~y~c~~~~ 84 (96)
.|.|....
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99999874
No 146
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.62 E-value=1.3e-06 Score=41.05 Aligned_cols=75 Identities=15% Similarity=0.055 Sum_probs=45.3
Q ss_pred eecCCCcEEEEEEeeecccceeEEeeccce-----eEe--cccceEE---EEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 12 GAPIDTDVTLECYVEAYPKSINYWVRDQGD-----MVI--SSERYEV---ESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~-----~~~--~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
.+..|+++.|.|.........+.|++.... +.. ....... ....+.....+.+|.|.+++..|.|.|.|.
T Consensus 9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~ 88 (105)
T cd05774 9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQ 88 (105)
T ss_pred cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEE
Confidence 467899999999754444448899985211 110 0000000 000000001246799999999999999999
Q ss_pred EecCC
Q psy4613 82 AKNSL 86 (96)
Q Consensus 82 ~~~~~ 86 (96)
+.+..
T Consensus 89 v~~~~ 93 (105)
T cd05774 89 TITTN 93 (105)
T ss_pred EEeCC
Confidence 98865
No 147
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.62 E-value=3.2e-06 Score=39.32 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=26.7
Q ss_pred EEEEEEccCCCCCCeeEEEEEec-CCCceEEEEEe
Q psy4613 62 KMRLTIKKITKYDLGSYKCIAKN-SLGEVESSIRL 95 (96)
Q Consensus 62 ~~~l~i~~~~~~d~g~y~c~~~~-~~g~~~~~~~l 95 (96)
...|.|.+++..|+|.|.|.+.+ +.|.....+.|
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L 97 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNFEAELVL 97 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCeeeEEEE
Confidence 45699999999999999999986 66665544443
No 148
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.58 E-value=1.8e-06 Score=38.71 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=40.7
Q ss_pred EEEEEEeeec-ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 19 VTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 19 ~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
+.|.|.+.+. |.+.+.|++++..+.. .. ..........+...+.+.+......+...|.|.+.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~-~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKG-VK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccC-ce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 5789998764 7789999998765431 11 1111111112334455666555555566999999986443
No 149
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.56 E-value=4.4e-06 Score=37.87 Aligned_cols=85 Identities=24% Similarity=0.346 Sum_probs=49.1
Q ss_pred CeEEecCceeeecCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
|.|......+... ++.+.+.|.+. +.|.+.+.|+.++...... ............+...+.|.+......+...+.|
T Consensus 1 p~I~~~~~~~~~~-~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C 78 (89)
T PF08205_consen 1 PEITPNPSLLEGE-GEEVTLTCSSSGGYPPPQITWYLDGGPVVAS-NTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTC 78 (89)
T ss_dssp EEEEEECSEEESS-TEEEEEEEEEEEEBS-EEEEEEETTCEECEE-EEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEE
T ss_pred CEeeCCCeeEccc-ceEEEEEEEeCCeECCeEEEEEECCCceeee-eeeeeeccCCCcceEEEEEEEEcChHHCCeEEEE
Confidence 4455554334333 78999999754 6788899999887655111 0111111111222244667776555555668999
Q ss_pred EEecCCCc
Q psy4613 81 IAKNSLGE 88 (96)
Q Consensus 81 ~~~~~~g~ 88 (96)
.+.+..-.
T Consensus 79 ~~~~~~~~ 86 (89)
T PF08205_consen 79 RASHPALS 86 (89)
T ss_dssp EEEETTCC
T ss_pred EEECCccC
Confidence 99886543
No 150
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.56 E-value=3.1e-06 Score=40.46 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=45.9
Q ss_pred ceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEe---c-----------ccceEEEEeccccceEEEEEEEc
Q psy4613 9 QLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVI---S-----------SERYEVESISRSIFDFKMRLTIK 68 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~---~-----------~~~~~~~~~~~~~~~~~~~l~i~ 68 (96)
..+.+..|++++|.|...... ...+.|++... .++. . .+++..... .......|.|.
T Consensus 5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~---~~~~~~~L~I~ 81 (117)
T cd04981 5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRD---TSKSTVYLQLN 81 (117)
T ss_pred CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEE---ccCCEEEEEEC
Confidence 456688999999999876533 45789997532 1110 0 011111100 00012469999
Q ss_pred cCCCCCCeeEEEEEec
Q psy4613 69 KITKYDLGSYKCIAKN 84 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~ 84 (96)
+++.+|+|.|.|....
T Consensus 82 ~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 82 SLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCHHHCEEEEEEEEc
Confidence 9999999999999875
No 151
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.56 E-value=5.3e-06 Score=40.78 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=47.3
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeec-cc-ceeEEeeccceeEe---cccce---EEEEeccccceEEEEEEEccCCCC
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAY-PK-SINYWVRDQGDMVI---SSERY---EVESISRSIFDFKMRLTIKKITKY 73 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~-~~~~w~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~ 73 (96)
|.+...+.......|+.+.|.|.+.+. |. ..+.|++++..... ..... ......+..+...+.|.+......
T Consensus 39 P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~ 118 (139)
T cd05771 39 PRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTED 118 (139)
T ss_pred CceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccC
Confidence 344333333333467889999999985 43 37899998643110 00011 111122233445566776655544
Q ss_pred CCeeEEEEEecCC
Q psy4613 74 DLGSYKCIAKNSL 86 (96)
Q Consensus 74 d~g~y~c~~~~~~ 86 (96)
+...|.|.+....
T Consensus 119 ~g~~ytC~V~H~~ 131 (139)
T cd05771 119 AGATYTCRVSHVS 131 (139)
T ss_pred CCCEEEEEEEcCC
Confidence 5569999998753
No 152
>KOG4222|consensus
Probab=98.53 E-value=3.3e-07 Score=57.16 Aligned_cols=74 Identities=28% Similarity=0.425 Sum_probs=56.4
Q ss_pred ceeeecCCCcEEEEEE-eeecccceeEEeeccceeEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 9 QLVGAPIDTDVTLECY-VEAYPKSINYWVRDQGDMVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~-~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
..+.+..|+.+.+.|. ..+.+.+.+.|.+++..+.... +...+. ....|.|.++++.|.|.|.|.+.|..
T Consensus 139 rd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~li--------sgG~LlIsnvrksD~GtY~CVatNmv 210 (1281)
T KOG4222|consen 139 RDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALI--------SGGNLLISNVRKSDEGTYACVATNMV 210 (1281)
T ss_pred ccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEe--------cCCcEEEeccccCCCceeeeeecccc
Confidence 4466778999999998 4678899999999987765322 222222 23668999999999999999999988
Q ss_pred CceE
Q psy4613 87 GEVE 90 (96)
Q Consensus 87 g~~~ 90 (96)
|.+.
T Consensus 211 G~Re 214 (1281)
T KOG4222|consen 211 GERE 214 (1281)
T ss_pred cccc
Confidence 8643
No 153
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.52 E-value=3.9e-06 Score=37.87 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=44.8
Q ss_pred eecCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 12 GAPIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
....|++++|.|.....+.| .+.|...+.....+.. . ...+|.+..+...|+|.+.|.+...
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~-----~-------~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN-----Q-------DKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc-----C-------CccEEEeceeCcccCCEEEEEEEEC
Confidence 46789999999998665555 8999876543321100 0 2367888999999999999999754
No 154
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.50 E-value=7.7e-06 Score=37.52 Aligned_cols=68 Identities=25% Similarity=0.430 Sum_probs=39.3
Q ss_pred CCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 16 DTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 16 g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
++.+.|.|.+.+. |.. .+.|.+++...................+...+.|.+... +...|.|.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~---~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPE---DKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCC---CCCEEEEEEEeCC
Confidence 6789999999995 443 789999864222111111112222223333445555443 5679999998754
No 155
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.49 E-value=5.3e-06 Score=35.07 Aligned_cols=66 Identities=30% Similarity=0.411 Sum_probs=42.4
Q ss_pred EEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 19 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
+.+.|.+.+.+...+.|++.+......... ..............+.+..++..|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccE--EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 367899888677789999875443211100 000111112245778899999999999999988765
No 156
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.48 E-value=5.6e-06 Score=37.12 Aligned_cols=66 Identities=18% Similarity=0.301 Sum_probs=42.4
Q ss_pred EEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 19 VTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 19 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
+.|.|...+ .|.+.+.|++++..+... .. ........+...+.|.+..-...|...|.|.+.+..-
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~--~~-~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l 68 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGK--ST-VEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV 68 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCc--cc-ceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence 678999765 577799999987665421 11 0111112233557787766666666799999988653
No 157
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.47 E-value=9.8e-06 Score=41.48 Aligned_cols=72 Identities=18% Similarity=0.356 Sum_probs=48.0
Q ss_pred ceeeecCCCcEEEEEEee-ecccceeEEeeccceeEec-----------ccceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613 9 QLVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVIS-----------SERYEVESISRSIFDFKMRLTIKKITKYDLG 76 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g 76 (96)
..+.+.+|+++.|.|... +...+.+.|.+........ ..|..+. ..+. ....+.|.+++.+|+|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~m--S~s~--~~StItIknVt~sDeG 98 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYL--SKSF--NESTILIKNVSLKDNG 98 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEe--ccCC--CcceEEEEeCChhhCe
Confidence 356789999999999975 5567789998864322110 0111110 0000 2477999999999999
Q ss_pred eEEEEEec
Q psy4613 77 SYKCIAKN 84 (96)
Q Consensus 77 ~y~c~~~~ 84 (96)
.|.|...-
T Consensus 99 cY~C~F~t 106 (189)
T PHA02987 99 CYTCIFNT 106 (189)
T ss_pred EEEEEEEe
Confidence 99999764
No 158
>KOG4222|consensus
Probab=98.46 E-value=2.5e-07 Score=57.64 Aligned_cols=81 Identities=23% Similarity=0.461 Sum_probs=62.5
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+..++....+..|..+.+.|.+.+.|.|.+.|.+.+..+ ...++.+.. ...++.|.++...|.|.|.|.
T Consensus 226 P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~--P~~ry~i~~-------d~qtl~i~r~tp~deg~y~C~ 296 (1281)
T KOG4222|consen 226 PWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSL--PRSRYSILD-------DTQTLRIDRVTPTDEGTYVCP 296 (1281)
T ss_pred CccccccccceeecccccccccccCCCCCCceeeeccCCCC--Cccceeeee-------ccccccccccCCCcccceeee
Confidence 33444556677888999999999999999999998865544 345555544 336789999999999999999
Q ss_pred EecCCCceEE
Q psy4613 82 AKNSLGEVES 91 (96)
Q Consensus 82 ~~~~~g~~~~ 91 (96)
+.|..|....
T Consensus 297 a~n~vG~l~a 306 (1281)
T KOG4222|consen 297 AENLVGGLEA 306 (1281)
T ss_pred cccccccccc
Confidence 9998876543
No 159
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.39 E-value=1.5e-05 Score=35.81 Aligned_cols=67 Identities=12% Similarity=0.161 Sum_probs=41.8
Q ss_pred EEEEEEeeec-ccceeEEeeccceeEecccceEEEEecc-ccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 19 VTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISR-SIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 19 ~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
+.|.|.+.+. |.+.+.|++++..+... ......... ..+...+.+.+......+...|.|.+.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~--~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGA--PTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCc--ceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 6789998874 77899999987554311 111211111 1333456666655566666799999998654
No 160
>KOG4221|consensus
Probab=98.39 E-value=1.2e-07 Score=59.28 Aligned_cols=83 Identities=24% Similarity=0.427 Sum_probs=62.0
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+..+.+-.+..+.+.|...+.|.+.+.|++++...+. .+.+.+.. ...+.|..+-..|.|.|+|.
T Consensus 329 P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ip-sdy~ki~~--------~~~lrIlgi~~sdeg~yQcv 399 (1381)
T KOG4221|consen 329 PGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIP-SDYFKIVG--------GGNLRILGIVKSDEGFYQCV 399 (1381)
T ss_pred CCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCc-ccceEecC--------CCCcEEEEEecccchhhhhh
Confidence 4444445556677799999999999999999999999766653 44444332 12277888888999999999
Q ss_pred EecCCCceEEEE
Q psy4613 82 AKNSLGEVESSI 93 (96)
Q Consensus 82 ~~~~~g~~~~~~ 93 (96)
+.|..|......
T Consensus 400 aen~~G~a~a~a 411 (1381)
T KOG4221|consen 400 AENDAGSAQAAA 411 (1381)
T ss_pred hccCcccccchh
Confidence 999988766543
No 161
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.38 E-value=2e-05 Score=36.67 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=47.0
Q ss_pred ecCceeeecCCCcEEEEEEeee-cccce--eEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613 6 VPNQLVGAPIDTDVTLECYVEA-YPKSI--NYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA 82 (96)
Q Consensus 6 ~~~~~~~~~~g~~~~l~c~~~~-~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 82 (96)
..+....+.+|+.++|.|.+.+ .|.+. +.|++.+..+... .... ..........++.+...+..|...|.|.+
T Consensus 6 l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~--~~~~--~~~~~~~~~stlt~~~~r~D~g~~~sC~A 81 (100)
T cd05755 6 LSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQ--PFGD--NTKSPVNAPATITITVDREDHGANFSCET 81 (100)
T ss_pred EecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccc--eecc--ccCCCceeEEEEEEecchhhCCcEEEEEE
Confidence 3334445689999999999876 45555 6999986555321 1110 00011113456666655444455999999
Q ss_pred ecCCCc
Q psy4613 83 KNSLGE 88 (96)
Q Consensus 83 ~~~~g~ 88 (96)
....+.
T Consensus 82 ~l~l~~ 87 (100)
T cd05755 82 ELDLRP 87 (100)
T ss_pred EeccCc
Confidence 976543
No 162
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.37 E-value=1.4e-05 Score=35.91 Aligned_cols=67 Identities=15% Similarity=0.259 Sum_probs=40.1
Q ss_pred EEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 19 VTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 19 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
+.|.|.+.+ .|...+.|++++..+. ..............+...+.+.+......+...|.|.+.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~-~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIK-DVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECc-CceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 578999887 5566889999876642 111111111111233345667766555555669999998754
No 163
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.30 E-value=3.2e-05 Score=35.76 Aligned_cols=34 Identities=26% Similarity=0.473 Sum_probs=28.3
Q ss_pred EEEEEEccCCCCCCeeEEEEEe-cCCCceEEEEEe
Q psy4613 62 KMRLTIKKITKYDLGSYKCIAK-NSLGEVESSIRL 95 (96)
Q Consensus 62 ~~~l~i~~~~~~d~g~y~c~~~-~~~g~~~~~~~l 95 (96)
..++.|.+++..|.|.|.|.+. .+.|...++..|
T Consensus 59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l 93 (96)
T cd05887 59 DATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTV 93 (96)
T ss_pred ccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEE
Confidence 4679999999999999999975 578887777654
No 164
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.29 E-value=2.8e-05 Score=34.25 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=39.3
Q ss_pred EEEEEEeeec-cc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 19 VTLECYVEAY-PK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 19 ~~l~c~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
++|.|.+.+. |. ..+.|++++...................+...+.|.+......+...|.|.+...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 5789999985 43 4789999865432111111111122234445566777665555666999998764
No 165
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.28 E-value=3.8e-05 Score=35.73 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=27.4
Q ss_pred EEEEEccCCCCCCeeEEEEEec-CCCceEEEEEe
Q psy4613 63 MRLTIKKITKYDLGSYKCIAKN-SLGEVESSIRL 95 (96)
Q Consensus 63 ~~l~i~~~~~~d~g~y~c~~~~-~~g~~~~~~~l 95 (96)
.++.|.+++..|.|.|.|.+.+ +.|.....+.|
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L 96 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNL 96 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEE
Confidence 6799999999999999999998 67766555544
No 166
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.24 E-value=4.7e-05 Score=35.23 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=27.6
Q ss_pred EEEEEEccCCCCCCeeEEEEEec-CCCceEEEEEe
Q psy4613 62 KMRLTIKKITKYDLGSYKCIAKN-SLGEVESSIRL 95 (96)
Q Consensus 62 ~~~l~i~~~~~~d~g~y~c~~~~-~~g~~~~~~~l 95 (96)
..++.|.+++..|.|.|.|.+.. +.|...+.+.+
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 46789999999999999999864 67777766543
No 167
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.22 E-value=5.3e-05 Score=34.91 Aligned_cols=74 Identities=14% Similarity=0.212 Sum_probs=41.5
Q ss_pred CCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 15 IDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 15 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
....+.|.|.+.+.-++ .+.|.+++...................+...+.|.+..-.-.+...|.|.+......
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 45668999999985443 678998865532111111111112224445566666544333445899999875443
No 168
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.21 E-value=2.5e-05 Score=36.36 Aligned_cols=85 Identities=16% Similarity=0.248 Sum_probs=46.6
Q ss_pred CeEE-ecCceeeecCCCcEEEEEEeeeccc--ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613 2 PVIH-VPNQLVGAPIDTDVTLECYVEAYPK--SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78 (96)
Q Consensus 2 p~~~-~~~~~~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 78 (96)
|.+. .++.......++.++|.|.+.+..+ -.+.|++++................+..|...+.|.+..-.-.+...|
T Consensus 2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~ 81 (100)
T cd07699 2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY 81 (100)
T ss_pred CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence 4443 3333333445778999999988443 368899987554211110111111123444455665554443345589
Q ss_pred EEEEecCC
Q psy4613 79 KCIAKNSL 86 (96)
Q Consensus 79 ~c~~~~~~ 86 (96)
.|.+....
T Consensus 82 sC~V~H~~ 89 (100)
T cd07699 82 TCEVTHEG 89 (100)
T ss_pred EEEEEecC
Confidence 99998654
No 169
>PHA03376 BARF1; Provisional
Probab=98.17 E-value=0.00011 Score=37.95 Aligned_cols=78 Identities=17% Similarity=0.069 Sum_probs=47.0
Q ss_pred eeeecCCCcEEEEEEeee---cccceeEEeecc----ceeEe-cccceEEEEe-----ccc-cceEEEEEEEccCCCCCC
Q psy4613 10 LVGAPIDTDVTLECYVEA---YPKSINYWVRDQ----GDMVI-SSERYEVESI-----SRS-IFDFKMRLTIKKITKYDL 75 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~---~~~~~~~w~~~~----~~~~~-~~~~~~~~~~-----~~~-~~~~~~~l~i~~~~~~d~ 75 (96)
.+.+.+|+.+.|.|.... ...-.++|++.+ ..... ........+. ... ....+.+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 456788999999998763 233478899842 22221 1111000000 000 001357899999999999
Q ss_pred eeEEEEEecCCC
Q psy4613 76 GSYKCIAKNSLG 87 (96)
Q Consensus 76 g~y~c~~~~~~g 87 (96)
|.|.|.+.....
T Consensus 100 GtY~C~fQkge~ 111 (221)
T PHA03376 100 GNYLCRMKLGET 111 (221)
T ss_pred ceEEEEEEcCCC
Confidence 999999887543
No 170
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.10 E-value=4.3e-05 Score=33.69 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=18.1
Q ss_pred EEEEEEccCCCCCCeeEEEE
Q psy4613 62 KMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 62 ~~~l~i~~~~~~d~g~y~c~ 81 (96)
...|.|.+++..|.|.|.|.
T Consensus 61 ~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 61 DVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred EEEEEEcCCCHHHCEEEEEc
Confidence 46799999999999999996
No 171
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.02 E-value=0.00017 Score=33.23 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=40.6
Q ss_pred cCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 14 PIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 14 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
..+...+|.|.+.+.-+. .+.|.+++................+..|...+.|.+.. .+...|.|.+....
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~ 84 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWG 84 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCC
Confidence 345668999999995443 67899886553211111112222333454556666654 23448999998753
No 172
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.98 E-value=0.00026 Score=33.87 Aligned_cols=82 Identities=13% Similarity=0.219 Sum_probs=44.5
Q ss_pred cCceeeecCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEecc-ccceEEEEEEEccCCCCC-CeeEEEEE
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISR-SIFDFKMRLTIKKITKYD-LGSYKCIA 82 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d-~g~y~c~~ 82 (96)
++.......+..++|.|.+.+.-+. .+.|.+++..+.............. ..|...+.|.+....-.+ ...|.|.+
T Consensus 9 ~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V 88 (115)
T cd05769 9 PPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIV 88 (115)
T ss_pred CcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEE
Confidence 3333333346678999999985444 7789988655431111000111111 234455667666544333 34899998
Q ss_pred ecCCCc
Q psy4613 83 KNSLGE 88 (96)
Q Consensus 83 ~~~~g~ 88 (96)
......
T Consensus 89 ~H~g~~ 94 (115)
T cd05769 89 QFYGGT 94 (115)
T ss_pred EEeCCc
Confidence 765433
No 173
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.96 E-value=0.00023 Score=32.78 Aligned_cols=68 Identities=12% Similarity=0.184 Sum_probs=41.1
Q ss_pred cCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 14 PIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 14 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
..|....|.|.+.+.-++ .+.|.+++.... ...........+..|+..+.|.+.. .+...|.|.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~---~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTP---TKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECC---CCCCeEEEEEEEC
Confidence 446667899999985444 678999876543 2211222233333454555555553 3445799999874
No 174
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.92 E-value=0.00029 Score=32.60 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=44.2
Q ss_pred cCceeeecCCCcEEEEEEeeec-ccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAY-PKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK 83 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~-~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 83 (96)
++.......++.++|.|.+.+. -++ .+.|.+++......... ......+..+...+.+.+..-.-.+...|.|.+.
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~-~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~ 83 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQ-PPESHNNATLSVTSTLNVSTDDWISGDTFQCKVT 83 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEec-ccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEE
Confidence 4444445568899999999998 333 67899975433211111 1111222234445555555432222337999998
Q ss_pred cCCC
Q psy4613 84 NSLG 87 (96)
Q Consensus 84 ~~~g 87 (96)
...-
T Consensus 84 H~~l 87 (96)
T cd07696 84 HPDL 87 (96)
T ss_pred CCCC
Confidence 7643
No 175
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.82 E-value=0.00031 Score=32.85 Aligned_cols=74 Identities=12% Similarity=0.234 Sum_probs=40.6
Q ss_pred ecCCCcEEEEEEeeecccc--eeEEeeccceeEeccc-ceEEEEec--cccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 13 APIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSE-RYEVESIS--RSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
...+..++|.|.+.+..++ .+.|.+++........ ........ +..|...+.|.+..-.-.+...|.|.+....
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 4457889999999985544 5689988654321100 00000100 1233345556554332233457999998754
No 176
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.74 E-value=0.00068 Score=31.34 Aligned_cols=68 Identities=7% Similarity=0.139 Sum_probs=38.9
Q ss_pred CCCcEEEEEEe-eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 15 IDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 15 ~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
........|.+ .+.|.+.+.|+++..... ........+..+...+.|.+......+...|.|.+.+..
T Consensus 14 ~~~~~va~C~s~~gkP~a~ItW~~~~~~~~----~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~ 82 (95)
T cd05719 14 GEPVTVATCVSANGKPPATISWETTLGGEA----ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPT 82 (95)
T ss_pred CCccEEEEEECCCCcCCCEEEEEeCCCCcc----eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcc
Confidence 34456778987 467888999998611110 111111111122244566665555555559999998865
No 177
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.74 E-value=0.00069 Score=31.39 Aligned_cols=69 Identities=16% Similarity=0.293 Sum_probs=38.7
Q ss_pred cCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 14 PIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 14 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
..+...+|.|.+.+.-++ .+.|.+++................ +.|...+.|.+..-.. ...|.|.+...
T Consensus 14 ~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~-dty~~~S~L~vt~~~~--~~~ysC~V~H~ 84 (96)
T cd07697 14 EKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDN-DVYSTTSWLTVTKDSL--GKKFRCIYKHE 84 (96)
T ss_pred ccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCC-CEEEEEEEEEECchhC--CCeEEEEEEEC
Confidence 345678999999985444 678998865532111111111111 2444556666554322 23599999873
No 178
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.71 E-value=0.00066 Score=30.39 Aligned_cols=71 Identities=17% Similarity=0.280 Sum_probs=41.3
Q ss_pred cCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 14 PIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 14 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
..++.+.|.|.+.+..+. .+.|.+++..+.............+..+...+.+.+. ..+...|.|.+.....
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 348899999999985433 6889887654421111111111233344455666666 2333489999986543
No 179
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.66 E-value=0.0011 Score=31.55 Aligned_cols=72 Identities=8% Similarity=0.230 Sum_probs=42.2
Q ss_pred ecCCCcEEEEEEeeeccc--ceeEEeeccceeEecccceEEEEecc-ccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 13 APIDTDVTLECYVEAYPK--SINYWVRDQGDMVISSERYEVESISR-SIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
...|+.++|.|.+.+.-+ -.+.|++++..+... ......... ..|...+.|.+......+...|.|.+....
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~--~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAE--QPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRT 92 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccc--ccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCC
Confidence 346778999999988544 378999987654311 111111111 234455666666533332336999988753
No 180
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.58 E-value=0.00022 Score=35.09 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=25.6
Q ss_pred EEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
.|.|.+++..|.|.|.|.+.+..+.....+.|
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l 33 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQL 33 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEE
Confidence 47899999999999999998876665554443
No 181
>PHA02633 hypothetical protein; Provisional
Probab=97.55 E-value=0.0005 Score=29.07 Aligned_cols=30 Identities=30% Similarity=0.308 Sum_probs=23.4
Q ss_pred EEEEEccCCCCCCeeEEEEEecCCCceEEE
Q psy4613 63 MRLTIKKITKYDLGSYKCIAKNSLGEVESS 92 (96)
Q Consensus 63 ~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~ 92 (96)
..|.|.++...|+|.|.|...|..-....+
T Consensus 18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~s 47 (63)
T PHA02633 18 NNMLILNPTQSDSGIYMCITKNETYSDMMK 47 (63)
T ss_pred ccEEEeccccccCcEEEEEEcCCCeeEEEE
Confidence 458889999999999999998765444333
No 182
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.50 E-value=0.0018 Score=29.94 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=38.5
Q ss_pred CCCcEEEEEEeeecccc--eeEEeeccceeEecccce-EEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 15 IDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERY-EVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 15 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
..+.++|.|.+.+.-+. .+.|.+++.. . ..... .........|...+.|.+..-.-.....|.|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~-~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-T-SGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-C-CCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 45678999999985444 6789988654 2 11110 0011112344445556555432112347999988754
No 183
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.43 E-value=0.0028 Score=30.36 Aligned_cols=71 Identities=10% Similarity=0.141 Sum_probs=43.3
Q ss_pred eeeecCCCcEEEEEEeeeccc---ceeEEeecccee---Ee---c--------ccceEEEEeccccceEEEEEEEccCCC
Q psy4613 10 LVGAPIDTDVTLECYVEAYPK---SINYWVRDQGDM---VI---S--------SERYEVESISRSIFDFKMRLTIKKITK 72 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~---~~~~w~~~~~~~---~~---~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~ 72 (96)
...+..+..+.|.|.+.+... -.+.|++..... .. . ..++.... +.......|.|.+++.
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~---~~s~ntv~L~l~~L~a 83 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDG---TLGNEQVNFTLQNLRA 83 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeE---eCCCCEEEEEEcCCCH
Confidence 345677888999999876443 357788753221 10 0 01111111 1111246799999999
Q ss_pred CCCeeEEEEEe
Q psy4613 73 YDLGSYKCIAK 83 (96)
Q Consensus 73 ~d~g~y~c~~~ 83 (96)
.|.+.|.|...
T Consensus 84 ~DTa~Y~Ca~e 94 (115)
T cd05721 84 NQTDIYFCKIE 94 (115)
T ss_pred HHCeEEEEEee
Confidence 99999999653
No 184
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.39 E-value=0.0027 Score=29.28 Aligned_cols=70 Identities=13% Similarity=0.202 Sum_probs=40.0
Q ss_pred cCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 14 PIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 14 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
..++..+|.|.+.+.-++ .+.|.+++...................+...+.|.+.. .+...|.|.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCC
Confidence 357889999999985444 67899986553211011111112222343445555543 34448999998753
No 185
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.35 E-value=0.0032 Score=29.40 Aligned_cols=77 Identities=12% Similarity=0.178 Sum_probs=41.3
Q ss_pred cCceeeecCCCcEEEEEEeeecc-c--ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAYP-K--SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK 83 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~~-~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 83 (96)
++.......+..+.+.|.+.+.. + -.+.|..++..-.... ......+..|...+.|.+..-.=.....|.|.+.
T Consensus 10 pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t---~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~ 86 (99)
T cd04986 10 RPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQT---SAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVT 86 (99)
T ss_pred CcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEc---CcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEE
Confidence 33333344678899999999854 2 3688988764311000 0111122334445666655321122237999988
Q ss_pred cCC
Q psy4613 84 NSL 86 (96)
Q Consensus 84 ~~~ 86 (96)
...
T Consensus 87 H~~ 89 (99)
T cd04986 87 HPE 89 (99)
T ss_pred CCC
Confidence 753
No 186
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.34 E-value=0.0032 Score=29.17 Aligned_cols=68 Identities=7% Similarity=0.092 Sum_probs=38.6
Q ss_pred CCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 15 IDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 15 ~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
.-....+.|.+. +.|.+.+.|+.+..... ...........+...+.|.+......|...+.|.+.+..
T Consensus 14 ~~~~~va~C~s~~gkPaa~IsW~~~~~g~~----~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~a 82 (95)
T cd07703 14 TIPVPVAKCVSANGRPPARISWSSTLGGNA----NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHET 82 (95)
T ss_pred CCccEEEEEEcCCCCCCcEEEEEcCCCCCe----eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcc
Confidence 344577889865 67888999997621111 011111111112234566665555555569999999865
No 187
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.88 E-value=0.0089 Score=25.95 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=33.0
Q ss_pred CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
..++.|.|.. ...+.|++ +...... ...++.+-.....-.|.|.|...+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~---------------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEV---------------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccccccc---------------cccEEeccCcccCCCcceEecCcc
Confidence 4568899965 24589998 4443211 125677777777778999998766
No 188
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.52 E-value=0.0075 Score=32.92 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=35.4
Q ss_pred ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 29 PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 29 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
..|...|...++..+....+..+.. .+.|.+.+-...++|.|.|...-.
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~--------TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITE--------TGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEcc--------CceEEeeccccccCCceEEEEEEE
Confidence 5678899887666554433444332 466999999999999999997753
No 189
>KOG3515|consensus
Probab=96.50 E-value=0.0026 Score=39.44 Aligned_cols=65 Identities=25% Similarity=0.355 Sum_probs=43.1
Q ss_pred eecCCCcEEEEEEeeeccc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 12 GAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
.+..|+.+.|.|.+.+.|+ ..+.|++++.... .+.... ...++......+...+.|.|.+.|+.+
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~---~~~~~~--------~~~~~~~~~~~~~~~~~~~c~a~ns~~ 83 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH---GRYATI--------ADPTLVTTGDVRDTVAELNCRAFNSVG 83 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccc---cccccc--------cCCceeeecchhhhhhhhhhhhccccc
Confidence 6788999999999987654 5899998854432 222111 234555555555555678888877644
No 190
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.06 E-value=0.028 Score=24.17 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=30.8
Q ss_pred ecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
...|.+++|.|+.... .+.|.+++........ .+.+.+-. ++.|-|.|...+.
T Consensus 4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~----------------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE----------------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EEeccEEEEECCCCCC---CceEEeCCccCCCCCc----------------eEEeeccC-CCCceEEEEeCCC
Confidence 3458899999975532 2889988633321111 11111222 6688999988643
No 191
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.74 E-value=0.036 Score=27.26 Aligned_cols=82 Identities=18% Similarity=0.312 Sum_probs=38.8
Q ss_pred eecCCCcEEEEEEeee-----cccceeEEeeccceeEe-cccceEEEE--ec----cccceEEEEEEEccCCCCCCeeEE
Q psy4613 12 GAPIDTDVTLECYVEA-----YPKSINYWVRDQGDMVI-SSERYEVES--IS----RSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~-----~~~~~~~w~~~~~~~~~-~~~~~~~~~--~~----~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
.....+.+.|+|.+.. ...-.+.|...+..+.. ......... +. .........|.+...+.- .|.|.
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence 3466888999999854 22336889887655432 221111110 00 000011234555553322 69999
Q ss_pred EEEecCCCceEEEEE
Q psy4613 80 CIAKNSLGEVESSIR 94 (96)
Q Consensus 80 c~~~~~~g~~~~~~~ 94 (96)
|.+..........+.
T Consensus 102 CeVt~~~~ege~~i~ 116 (130)
T PF08204_consen 102 CEVTELSREGETTIE 116 (130)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EEEEecCCCceEEEE
Confidence 999876665554443
No 192
>PHA02982 hypothetical protein; Provisional
Probab=95.70 E-value=0.14 Score=27.47 Aligned_cols=77 Identities=27% Similarity=0.431 Sum_probs=45.1
Q ss_pred eeecCCCcEEEEEEeeecc-cceeEEeeccceeEec--ccceEEEE----------ecc-ccceEEEEEEEccCCCCCCe
Q psy4613 11 VGAPIDTDVTLECYVEAYP-KSINYWVRDQGDMVIS--SERYEVES----------ISR-SIFDFKMRLTIKKITKYDLG 76 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~--~~~~~~~~----------~~~-~~~~~~~~l~i~~~~~~d~g 76 (96)
+.+-+++.+.|.|...... ..+..|.......... .....+.. ... ......++|+|.++.....|
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 3455689999999855433 3366787654322210 00000000 000 00114689999999999999
Q ss_pred eEEEEEecCCC
Q psy4613 77 SYKCIAKNSLG 87 (96)
Q Consensus 77 ~y~c~~~~~~g 87 (96)
.|.|.+....+
T Consensus 114 CYtc~~ks~~~ 124 (251)
T PHA02982 114 CFTCEAKDAEG 124 (251)
T ss_pred ceEEEEecCCC
Confidence 99999987554
No 193
>PHA03052 Hypothetical protein; Provisional
Probab=95.54 E-value=0.053 Score=23.45 Aligned_cols=34 Identities=15% Similarity=0.411 Sum_probs=25.0
Q ss_pred ceeeecCCCcEEEEEEeeecc---cceeEEeecccee
Q psy4613 9 QLVGAPIDTDVTLECYVEAYP---KSINYWVRDQGDM 42 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~~~ 42 (96)
..+.+..|+.+++.|.+.-.+ .+.+.|..++...
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 667889999999999976333 4577787765444
No 194
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=95.26 E-value=0.12 Score=24.12 Aligned_cols=73 Identities=10% Similarity=0.082 Sum_probs=42.2
Q ss_pred ceeeecCCCcEEE-EEEe-eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 9 QLVGAPIDTDVTL-ECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 9 ~~~~~~~g~~~~l-~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
....+..|..+.+ .|.+ .+.|.+.+.|+.+..... ........+......+.+.+...+..|...+.|.+...
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~----~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS----ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHP 83 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc----ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCc
Confidence 4455677888777 7775 567788999996522111 01111111112223455666555555666999999875
No 195
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.83 E-value=0.19 Score=23.95 Aligned_cols=29 Identities=31% Similarity=0.319 Sum_probs=23.8
Q ss_pred EEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 62 ~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
..+|.|..++..|+|.|...+.+..|...
T Consensus 70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~ 98 (108)
T PF11465_consen 70 NLALLIKAAQPQDSGLYCLEVTNESGKVC 98 (108)
T ss_dssp TTEEEESS-SGGG-EEEEEEEEETTSCEE
T ss_pred CceEEEeecCcccCceEEEEEEcCCCcEE
Confidence 36799999999999999999999888764
No 196
>KOG4597|consensus
Probab=94.37 E-value=0.1 Score=31.22 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=50.6
Q ss_pred eeecCCCcEEEEEEeeecccceeEEeec---cceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 11 VGAPIDTDVTLECYVEAYPKSINYWVRD---QGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
-.+-++.+..+.|...|.+.+.+.|-+. .......... ... +.... ....|.|-+....|.|.|.|.+.+..|
T Consensus 206 w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq-~~e-~p~vt--stcql~ic~ewq~~a~w~tCs~rcg~g 281 (560)
T KOG4597|consen 206 WFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQ-TVE-NPVVT--STCQLVICNEWQADAGWYTCSARCGAG 281 (560)
T ss_pred hhcccchhhcccccccCCcCceeeeehhhccccceeecCcc-ccC-Cccee--eeeeEEEcchhhcCCCceeeccccccc
Confidence 3456788899999999999999999643 1122211111 000 00000 124477888888999999999999888
Q ss_pred ceEEEE
Q psy4613 88 EVESSI 93 (96)
Q Consensus 88 ~~~~~~ 93 (96)
.....+
T Consensus 282 ~~~rdv 287 (560)
T KOG4597|consen 282 FLRRDV 287 (560)
T ss_pred eeeccc
Confidence 765544
No 197
>KOG1480|consensus
Probab=93.18 E-value=0.021 Score=35.84 Aligned_cols=70 Identities=21% Similarity=0.346 Sum_probs=46.7
Q ss_pred eeecCCCcEEEEEE-eeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613 11 VGAPIDTDVTLECY-VEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 11 ~~~~~g~~~~l~c~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~ 89 (96)
..+..+....+.|. ..+.+...+.|++++.... +... .... .-..+.+..+...|.|.|.|.+.|.++..
T Consensus 139 q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~-pd~n-~~~~-------~d~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 139 QEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVID-PDAN-VIRA-------SDHNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred heecccccccccccCcccchhhhhhccccCCCCC-cccc-chhh-------hcCCccccchhhhhcccceeeeehhhccc
Confidence 44666777777776 4566777889998854432 2111 1111 12457788888999999999999977654
No 198
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=93.00 E-value=0.49 Score=22.29 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=19.9
Q ss_pred ecCCCcEEEEEEeeec-cc--ceeEEeecc
Q psy4613 13 APIDTDVTLECYVEAY-PK--SINYWVRDQ 39 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~-~~--~~~~w~~~~ 39 (96)
..+|..+++.|.+.+. |. ..+.|++..
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~ 41 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGE 41 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCc
Confidence 4789999999998753 33 367887754
No 199
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=92.33 E-value=1.5 Score=26.19 Aligned_cols=76 Identities=20% Similarity=0.306 Sum_probs=45.6
Q ss_pred ceeeecCCCcEEEEEEeee---cccceeEEeecc---ceeE-------------ecccceEEEEe--ccccceEEEEEEE
Q psy4613 9 QLVGAPIDTDVTLECYVEA---YPKSINYWVRDQ---GDMV-------------ISSERYEVESI--SRSIFDFKMRLTI 67 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~---~~~~~~~w~~~~---~~~~-------------~~~~~~~~~~~--~~~~~~~~~~l~i 67 (96)
..+.+++|+++.+.|.+.. .......|..-+ +++. .....+.+... -+... ..++|+|
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dl-k~STLTI 350 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDL-KNSTLTI 350 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccch-hhceEEe
Confidence 3456778999999999875 334466786432 1111 01112222111 00110 4688999
Q ss_pred ccCCCCCCeeEEEEEecC
Q psy4613 68 KKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~ 85 (96)
.++.....|.|.|.+...
T Consensus 351 kka~I~N~GCY~~~a~~g 368 (500)
T PHA02914 351 KKAHINNAGCYEAQAFMG 368 (500)
T ss_pred eeEEEEcCCceEEEEecC
Confidence 999999999999998754
No 200
>KOG3515|consensus
Probab=92.05 E-value=0.97 Score=29.00 Aligned_cols=73 Identities=19% Similarity=0.124 Sum_probs=43.4
Q ss_pred eecCCCcEEEEEEee--ecccceeEEeeccceeEeccc-ceEEEEeccccc-eEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 12 GAPIDTDVTLECYVE--AYPKSINYWVRDQGDMVISSE-RYEVESISRSIF-DFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~--~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
....+..+.+.|... +.|.+.+.|..++........ ........-... ...+.+.+...+..+.|.|.|.+.+
T Consensus 108 ~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~n 184 (741)
T KOG3515|consen 108 FQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANN 184 (741)
T ss_pred hhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEccccc
Confidence 355678888999654 456668889887654432211 111110000010 1245577777888899999999987
No 201
>PHA03042 CD47-like protein; Provisional
Probab=90.70 E-value=1.9 Score=24.30 Aligned_cols=63 Identities=13% Similarity=0.244 Sum_probs=36.4
Q ss_pred ecCCCcEEEEEEeeec-----ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 13 APIDTDVTLECYVEAY-----PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
....+++.++|..... ..-.+.|..++......... . ...+.+...+ .-.|+|+|.+.+...
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-n-----------~aSL~~~f~~-~l~GNYTCEv~~l~n 94 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-N-----------TSSLKFNFSK-NLSGNYTCEAINKFN 94 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-c-----------ceEEEEeccc-cCCCceeEEEeeccc
Confidence 3457889999987642 34468898886554322111 0 1233333322 226899999887544
Q ss_pred c
Q psy4613 88 E 88 (96)
Q Consensus 88 ~ 88 (96)
.
T Consensus 95 ~ 95 (286)
T PHA03042 95 K 95 (286)
T ss_pred C
Confidence 3
No 202
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=89.62 E-value=1.2 Score=20.46 Aligned_cols=65 Identities=14% Similarity=0.221 Sum_probs=36.7
Q ss_pred eeeecCCCcEEEEEEeeec-----ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613 10 LVGAPIDTDVTLECYVEAY-----PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA 82 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 82 (96)
...+..|+.++..|..... ....+.|..++..+ +.++++.... ..+..++........-.|.|..
T Consensus 12 ~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i--P~~qy~~in~------~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 12 SPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI--PGSQYRVIND------TVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp SSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES--TCGCEEEEST------TEEEEEESS--SSEEEEEEEEE
T ss_pred CCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC--ChhHcceeCC------eEEEEEEccCCCCCceEEEEEE
Confidence 3457899999999997632 34478898875532 4455544332 2356666666555444555653
No 203
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=89.49 E-value=2.8 Score=24.44 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=16.6
Q ss_pred cEEEEEEeeecccc--eeEEeec
Q psy4613 18 DVTLECYVEAYPKS--INYWVRD 38 (96)
Q Consensus 18 ~~~l~c~~~~~~~~--~~~w~~~ 38 (96)
.+.|.|.+.|.-+. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999996554 5679887
No 204
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=79.44 E-value=4.6 Score=18.21 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=16.8
Q ss_pred EEEEccCCCCCCeeEEEEE-ecCC
Q psy4613 64 RLTIKKITKYDLGSYKCIA-KNSL 86 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~-~~~~ 86 (96)
..........|.|.+.|.+ .+..
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~ 67 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEP 67 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTT
T ss_pred EEEEecCCCCCCEEEEEEEcCCce
Confidence 3455666778999999999 4443
No 205
>PHA03269 envelope glycoprotein C; Provisional
Probab=79.41 E-value=13 Score=23.25 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=41.1
Q ss_pred eecCCCcEEEEEEeeecccc---eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCC--eeEEEEEec
Q psy4613 12 GAPIDTDVTLECYVEAYPKS---INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDL--GSYKCIAKN 84 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~--g~y~c~~~~ 84 (96)
.+..|+...-.|.+..+-++ .+.|+.++.......-........+..+...+++.+......|. -...|.+..
T Consensus 338 PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W 415 (566)
T PHA03269 338 PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLW 415 (566)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEE
Confidence 46779999999998775433 68899986665421111112222222233456666644333332 357787654
No 206
>PHA03273 envelope glycoprotein C; Provisional
Probab=72.26 E-value=21 Score=22.17 Aligned_cols=73 Identities=11% Similarity=0.105 Sum_probs=41.6
Q ss_pred eecCCCcEEEEEEeeecccc---eeEEeeccceeE-ecccceEEEEeccccceEEEEEEEccCCCCCC-eeEEEEEec
Q psy4613 12 GAPIDTDVTLECYVEAYPKS---INYWVRDQGDMV-ISSERYEVESISRSIFDFKMRLTIKKITKYDL-GSYKCIAKN 84 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~-g~y~c~~~~ 84 (96)
.+..|+...-.|.+...-++ .+.|+.++.... ....+.......+......+++.+......+. -...|.+..
T Consensus 246 PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W 323 (486)
T PHA03273 246 PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEW 323 (486)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEE
Confidence 46779999999998774433 688999876554 11111112212222223456676666544443 367887654
No 207
>PHA03270 envelope glycoprotein C; Provisional
Probab=71.19 E-value=21 Score=21.92 Aligned_cols=73 Identities=11% Similarity=0.092 Sum_probs=40.7
Q ss_pred eecCCCcEEEEEEeeecccc---eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCC-eeEEEEEec
Q psy4613 12 GAPIDTDVTLECYVEAYPKS---INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDL-GSYKCIAKN 84 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~-g~y~c~~~~ 84 (96)
.+..|+...-.|.+..+-++ .+.|+.++.................+.+...+++++........ -...|.+..
T Consensus 230 PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W 306 (466)
T PHA03270 230 AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTW 306 (466)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEE
Confidence 35678999999998775433 68899987655321111111112222333556676666543322 267787654
No 208
>PHA03240 envelope glycoprotein M; Provisional
Probab=67.73 E-value=7.9 Score=21.21 Aligned_cols=30 Identities=20% Similarity=0.113 Sum_probs=21.0
Q ss_pred cceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 58 IFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 58 ~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
..+.+++|.|..+...|.|.|.-......|
T Consensus 100 y~C~NstL~i~~vn~sd~~nYcr~k~~~~g 129 (258)
T PHA03240 100 YECHNSTLIIAHLNLSDAGEYCRKKCPPKG 129 (258)
T ss_pred EEeccceEEEEEEeecCcchhhhccCCCCC
Confidence 334678899999999999988544333333
No 209
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=64.45 E-value=19 Score=18.74 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=15.5
Q ss_pred CCCCeeEEEEEecCCCceEEEE
Q psy4613 72 KYDLGSYKCIAKNSLGEVESSI 93 (96)
Q Consensus 72 ~~d~g~y~c~~~~~~g~~~~~~ 93 (96)
..|.+.|.|.++.+.|...-.+
T Consensus 69 s~d~~~~sC~I~RPqgkSYL~F 90 (158)
T PF10572_consen 69 SDDNGHYSCIIWRPQGKSYLFF 90 (158)
T ss_pred cCCCCceEEEEECCCCCcEEEE
Confidence 3466789999999887655433
No 210
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=63.12 E-value=16 Score=17.38 Aligned_cols=71 Identities=13% Similarity=0.228 Sum_probs=36.5
Q ss_pred EEEEEE-eeecccceeEEeecc-ceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEE
Q psy4613 19 VTLECY-VEAYPKSINYWVRDQ-GDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIR 94 (96)
Q Consensus 19 ~~l~c~-~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~ 94 (96)
+.-.|. +.|.|.+.+.|.-+- +... .+.....+......+.+.+-.....|.....|.+......+.-.+.
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~e-----tq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~ 95 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAE-----FQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVT 95 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCcee-----eeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEE
Confidence 444687 567788899996431 1111 0111111111113344555555556666899998876444443333
No 211
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=60.28 E-value=22 Score=18.61 Aligned_cols=23 Identities=22% Similarity=0.094 Sum_probs=19.5
Q ss_pred EEEEEEccCCCCCCeeEEEEEec
Q psy4613 62 KMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 62 ~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
...|.|.+.+..|+|.|...++-
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l 145 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWL 145 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEE
Confidence 35589999999999999988774
No 212
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=56.65 E-value=14 Score=15.26 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=10.3
Q ss_pred CCCeeEEEEEecCCC
Q psy4613 73 YDLGSYKCIAKNSLG 87 (96)
Q Consensus 73 ~d~g~y~c~~~~~~g 87 (96)
..+..|.|.+.|.-|
T Consensus 8 dssnsflctvqnkng 22 (65)
T PF13220_consen 8 DSSNSFLCTVQNKNG 22 (65)
T ss_pred cCCCceEEEEecccH
Confidence 345578888887655
No 213
>PHA03112 IL-18 binding protein; Provisional
Probab=52.61 E-value=32 Score=17.63 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=39.2
Q ss_pred ecCCCcEEEEEEeeec-c-cceeEEeecc-ceeE----ec--ccceEEEEecc-ccceEEEEEEEccCCCC-CCeeEEEE
Q psy4613 13 APIDTDVTLECYVEAY-P-KSINYWVRDQ-GDMV----IS--SERYEVESISR-SIFDFKMRLTIKKITKY-DLGSYKCI 81 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~-~-~~~~~w~~~~-~~~~----~~--~~~~~~~~~~~-~~~~~~~~l~i~~~~~~-d~g~y~c~ 81 (96)
...++.+.+.|.+.+. | ...++|...+ .... .+ .++........ ........+.+..+... +.-.+.|.
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCV 114 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCV 114 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEE
Confidence 4558889999998754 4 3678898554 2111 00 11111000000 01113455666666643 22378898
Q ss_pred EecCCCce
Q psy4613 82 AKNSLGEV 89 (96)
Q Consensus 82 ~~~~~g~~ 89 (96)
.....+..
T Consensus 115 L~D~~~~~ 122 (141)
T PHA03112 115 LMDLDGPI 122 (141)
T ss_pred EecCCchh
Confidence 87665543
No 214
>PF15096 G6B: G6B family
Probab=46.80 E-value=23 Score=19.10 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=12.2
Q ss_pred eeecCCCcEEEEEEeee
Q psy4613 11 VGAPIDTDVTLECYVEA 27 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~ 27 (96)
+.-..|+.+++.|.-.+
T Consensus 6 LeGrPGDRVnlSCvGVs 22 (224)
T PF15096_consen 6 LEGRPGDRVNLSCVGVS 22 (224)
T ss_pred ccCCCCCeeeeeeccCC
Confidence 34567899999997443
No 215
>PHA03282 envelope glycoprotein E; Provisional
Probab=42.39 E-value=59 Score=20.51 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=19.6
Q ss_pred EEEEEEEccCCCCCCeeEEEEEe
Q psy4613 61 FKMRLTIKKITKYDLGSYKCIAK 83 (96)
Q Consensus 61 ~~~~l~i~~~~~~d~g~y~c~~~ 83 (96)
.+.++.|.+++..|+|.|...+.
T Consensus 122 ~n~tl~l~~a~~~DsG~Y~L~~~ 144 (540)
T PHA03282 122 VNGTLVLREARETDSGMYVLSVS 144 (540)
T ss_pred ecceEEEeeccccCCceEEEEec
Confidence 35779999999999999998763
No 216
>PHA03290 envelope glycoprotein I; Provisional
Probab=38.45 E-value=68 Score=19.20 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=19.6
Q ss_pred EEEEEEccCCCCCCeeEEEEEec
Q psy4613 62 KMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 62 ~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
...|.|.+.+..|+|.|...++-
T Consensus 128 ~vLL~I~~P~~~DSGiY~LRV~L 150 (357)
T PHA03290 128 EIIFKINKPGIEDAGIYLLLVQL 150 (357)
T ss_pred ceEEEeCCCCcccCeeEEEEEEe
Confidence 45688999999999999988774
No 217
>PHA03286 envelope glycoprotein E; Provisional
Probab=36.05 E-value=1.1e+02 Score=19.26 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=24.8
Q ss_pred EEEEEccCCCCCCeeEEEEEecCCCceEEEE
Q psy4613 63 MRLTIKKITKYDLGSYKCIAKNSLGEVESSI 93 (96)
Q Consensus 63 ~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~ 93 (96)
+.|.|.+.+..++|.|.....+..|......
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~v 157 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDV 157 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEE
Confidence 5688999999999999999888766554443
No 218
>PHA03289 envelope glycoprotein I; Provisional
Probab=35.39 E-value=82 Score=18.79 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=19.4
Q ss_pred EEEEEEccCCCCCCeeEEEEEec
Q psy4613 62 KMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 62 ~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
...|.|.+.+..|+|.|...++-
T Consensus 121 gvLL~I~~Pr~~DSGiYyLRV~L 143 (352)
T PHA03289 121 GLLLTIIEPRMSDTGIYYIRVSL 143 (352)
T ss_pred ceEEEeCCCCcccCeeEEEEEEe
Confidence 35688999999999999988774
No 219
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=34.91 E-value=56 Score=15.33 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=19.0
Q ss_pred EEecCceeeecCCCcEEEEEEee
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVE 26 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~ 26 (96)
+...+....++.|+++.+.|+..
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCSts 28 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTS 28 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEES
T ss_pred EEEECCccEECCCCCEEEEEcCC
Confidence 45667778899999999999964
No 220
>PHA03292 envelope glycoprotein I; Provisional
Probab=33.38 E-value=88 Score=19.18 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=19.5
Q ss_pred EEEEEEccCCCCCCeeEEEEEec
Q psy4613 62 KMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 62 ~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
...|.|.+.+..|+|.|...++-
T Consensus 127 ~vLL~I~~P~~~DSGiY~LRV~L 149 (413)
T PHA03292 127 NVLLNITGPQPADSGAYILRVKL 149 (413)
T ss_pred ceEEEeCCCCcccceeEEEEEEe
Confidence 35688999999999999988774
No 221
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=29.94 E-value=15 Score=15.92 Aligned_cols=17 Identities=35% Similarity=0.471 Sum_probs=2.2
Q ss_pred EEEEccCCCCCCeeEEE
Q psy4613 64 RLTIKKITKYDLGSYKC 80 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c 80 (96)
.+.+..++..|.|.|..
T Consensus 30 lf~iyR~rkkdEGSY~l 46 (64)
T PF01034_consen 30 LFLIYRMRKKDEGSYDL 46 (64)
T ss_dssp -------S------SS-
T ss_pred HHHHHHHHhcCCCCccC
Confidence 35566778888888754
No 222
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=28.93 E-value=68 Score=14.48 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=16.9
Q ss_pred cEEEEEEeeecccceeEEeecccee
Q psy4613 18 DVTLECYVEAYPKSINYWVRDQGDM 42 (96)
Q Consensus 18 ~~~l~c~~~~~~~~~~~w~~~~~~~ 42 (96)
...|...+.+. ...++|+.++..+
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~ 54 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPL 54 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEc
Confidence 56666677665 5589999986554
No 223
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=27.31 E-value=67 Score=13.91 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=12.2
Q ss_pred cCCCcEEEEEEeeecccceeEEee
Q psy4613 14 PIDTDVTLECYVEAYPKSINYWVR 37 (96)
Q Consensus 14 ~~g~~~~l~c~~~~~~~~~~~w~~ 37 (96)
..|..++|. |.+...+.|++
T Consensus 3 ~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 3 TVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred eEcCcEEEe----CCCCCceEEEE
Confidence 456666654 54545788983
No 224
>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins. Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.
Probab=26.72 E-value=94 Score=15.37 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=14.0
Q ss_pred EEEEEccCCCCCCeeEEEEEe
Q psy4613 63 MRLTIKKITKYDLGSYKCIAK 83 (96)
Q Consensus 63 ~~l~i~~~~~~d~g~y~c~~~ 83 (96)
..|.|..-+.+|.|.|.-...
T Consensus 103 LsL~Il~SrkE~EGWYfmtlE 123 (126)
T PF06214_consen 103 LSLEILESRKEDEGWYFMTLE 123 (126)
T ss_dssp TEEEETT--GGG-EEEEEEEE
T ss_pred ceeehhccccccCceEEEEee
Confidence 568888889999998876543
No 225
>PHA03271 envelope glycoprotein C; Provisional
Probab=26.23 E-value=1.8e+02 Score=18.38 Aligned_cols=74 Identities=9% Similarity=0.028 Sum_probs=38.5
Q ss_pred eecCCCcEEEEEEeeecccc---eeEEeeccceeEecccc-eEE-EEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 12 GAPIDTDVTLECYVEAYPKS---INYWVRDQGDMVISSER-YEV-ESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.+..|+...-.|.+...-++ .+.|+.++........+ ... ...........+++.+.......--...|.+..-
T Consensus 256 PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~ 334 (490)
T PHA03271 256 PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWK 334 (490)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEc
Confidence 35679999999998875433 68899886554322111 111 1111112223455555443222223678876543
No 226
>COG5475 Uncharacterized small protein [Function unknown]
Probab=25.94 E-value=69 Score=13.57 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=11.5
Q ss_pred eeEEEEEecCCCceE
Q psy4613 76 GSYKCIAKNSLGEVE 90 (96)
Q Consensus 76 g~y~c~~~~~~g~~~ 90 (96)
|.|.|...+..|...
T Consensus 29 Gmy~C~Wf~g~g~~~ 43 (60)
T COG5475 29 GMYECRWFDGYGVKR 43 (60)
T ss_pred CeEEEEEecCCCccc
Confidence 789999888777433
No 227
>PHA03283 envelope glycoprotein E; Provisional
Probab=25.58 E-value=2e+02 Score=18.70 Aligned_cols=25 Identities=20% Similarity=0.096 Sum_probs=21.2
Q ss_pred EEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 63 MRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 63 ~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
..+.|.++...++|.|.....+..+
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~ 158 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGM 158 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCc
Confidence 5688999999999999998877554
No 228
>PHA03189 UL14 tegument protein; Provisional
Probab=24.18 E-value=1.7e+02 Score=17.51 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=15.5
Q ss_pred CceeeecCCCcEEEEEEeee
Q psy4613 8 NQLVGAPIDTDVTLECYVEA 27 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~ 27 (96)
+..+.++.|+.+++.|.+..
T Consensus 59 pAP~l~pyGdrvtVpC~fp~ 78 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPT 78 (348)
T ss_pred CCccccCCCceeeeeeeecC
Confidence 34456788999999999754
No 229
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=23.73 E-value=1.3e+02 Score=16.17 Aligned_cols=24 Identities=17% Similarity=0.488 Sum_probs=18.4
Q ss_pred EEEEEEccCCCCCCeeEEEEEecC
Q psy4613 62 KMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 62 ~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
...+++..+...-.|.|.|..+..
T Consensus 92 ~i~mt~hQVN~DGaGP~~C~iD~t 115 (184)
T PF11327_consen 92 SISMTIHQVNADGAGPFTCDIDET 115 (184)
T ss_pred EEEEEEEEecCCCCcCeEEEECCC
Confidence 355677778877789999998754
No 230
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=20.53 E-value=55 Score=12.24 Aligned_cols=8 Identities=50% Similarity=0.746 Sum_probs=5.2
Q ss_pred CCeeEEEE
Q psy4613 74 DLGSYKCI 81 (96)
Q Consensus 74 d~g~y~c~ 81 (96)
+.|.|+|.
T Consensus 22 ~dG~~yC~ 29 (36)
T PF11781_consen 22 DDGFYYCD 29 (36)
T ss_pred cCCEEEhh
Confidence 45777773
No 231
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=20.45 E-value=1.4e+02 Score=18.70 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=14.7
Q ss_pred EEEEccCCCCCCeeEEEEEec
Q psy4613 64 RLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~ 84 (96)
.|.+.+....++|.|.|.+.-
T Consensus 270 ~l~f~~a~~~~sGLYv~V~~~ 290 (439)
T PF02480_consen 270 DLQFTNAPESASGLYVFVVYY 290 (439)
T ss_dssp SEEESS--GGG-EEEEEEEEE
T ss_pred ceEecCCCcccCceEEEEEEE
Confidence 477888899999999998764
Done!